Query 008005
Match_columns 581
No_of_seqs 1102 out of 2943
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.6E-89 5.6E-94 624.8 39.0 512 48-562 2-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 3.7E-66 7.9E-71 459.2 29.5 482 61-558 5-507 (508)
3 KOG0271 Notchless-like WD40 re 100.0 2.2E-51 4.7E-56 372.8 30.4 326 247-580 90-464 (480)
4 KOG0273 Beta-transducin family 100.0 1.3E-46 2.9E-51 350.6 30.4 318 258-580 165-506 (524)
5 KOG0271 Notchless-like WD40 re 100.0 6.4E-47 1.4E-51 343.7 26.8 306 238-558 130-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-45 1.8E-49 334.4 23.5 281 270-558 173-458 (459)
7 KOG0286 G-protein beta subunit 100.0 3.6E-42 7.8E-47 302.7 33.9 292 260-558 43-343 (343)
8 KOG0282 mRNA splicing factor [ 100.0 3.7E-42 8E-47 322.3 21.6 299 256-558 198-503 (503)
9 KOG0279 G protein beta subunit 100.0 5.6E-39 1.2E-43 281.0 31.8 291 264-561 7-314 (315)
10 KOG0265 U5 snRNP-specific prot 100.0 5.2E-39 1.1E-43 283.9 28.8 291 263-558 38-336 (338)
11 KOG0315 G-protein beta subunit 100.0 9.3E-38 2E-42 268.7 29.4 276 285-569 11-297 (311)
12 KOG0645 WD40 repeat protein [G 100.0 4E-37 8.7E-42 268.2 32.6 287 264-560 6-311 (312)
13 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-39 5.9E-44 298.1 18.9 246 263-515 208-458 (459)
14 KOG0316 Conserved WD40 repeat- 100.0 1.5E-37 3.2E-42 265.3 26.8 292 259-559 4-298 (307)
15 KOG0291 WD40-repeat-containing 100.0 1.5E-36 3.3E-41 298.3 34.9 348 228-580 100-533 (893)
16 KOG0263 Transcription initiati 100.0 3.6E-36 7.9E-41 298.7 35.9 280 258-541 364-697 (707)
17 KOG0284 Polyadenylation factor 100.0 5.5E-38 1.2E-42 288.1 20.2 284 271-562 95-382 (464)
18 KOG0318 WD40 repeat stress pro 100.0 6.5E-36 1.4E-40 282.8 34.8 309 240-560 165-602 (603)
19 KOG0285 Pleiotropic regulator 100.0 5.4E-37 1.2E-41 276.9 26.2 299 257-565 136-444 (460)
20 KOG0266 WD40 repeat-containing 100.0 3.1E-36 6.8E-41 308.1 33.6 293 265-560 151-454 (456)
21 KOG0295 WD40 repeat-containing 100.0 8E-37 1.7E-41 276.7 25.2 290 262-559 98-405 (406)
22 KOG0315 G-protein beta subunit 100.0 1.3E-35 2.8E-40 255.5 29.4 288 238-538 13-309 (311)
23 cd00200 WD40 WD40 domain, foun 100.0 5.6E-35 1.2E-39 283.4 37.9 286 265-558 2-289 (289)
24 KOG0273 Beta-transducin family 100.0 2.1E-35 4.6E-40 275.9 31.1 278 272-560 235-523 (524)
25 KOG0279 G protein beta subunit 100.0 2.3E-35 5.1E-40 258.3 28.8 271 238-517 31-313 (315)
26 KOG0296 Angio-associated migra 100.0 3.3E-35 7.1E-40 266.5 28.3 310 264-580 56-381 (399)
27 KOG0291 WD40-repeat-containing 100.0 6.9E-34 1.5E-38 279.7 34.5 325 237-569 271-621 (893)
28 KOG0640 mRNA cleavage stimulat 100.0 6.9E-34 1.5E-38 252.2 28.3 348 210-560 39-426 (430)
29 KOG0286 G-protein beta subunit 100.0 1.1E-33 2.5E-38 249.2 28.8 267 237-515 69-343 (343)
30 PLN00181 protein SPA1-RELATED; 100.0 4.6E-33 9.9E-38 306.2 39.7 285 268-559 479-792 (793)
31 KOG0319 WD40-repeat-containing 100.0 4.6E-34 1E-38 280.7 27.5 297 263-567 95-584 (775)
32 KOG0263 Transcription initiati 100.0 1.7E-34 3.7E-39 286.8 24.0 249 312-565 373-654 (707)
33 KOG0278 Serine/threonine kinas 100.0 1.2E-34 2.6E-39 249.6 19.0 289 266-565 8-302 (334)
34 KOG0288 WD40 repeat protein Ti 100.0 6.9E-35 1.5E-39 268.2 17.0 299 253-558 156-459 (459)
35 KOG0318 WD40 repeat stress pro 100.0 3.4E-32 7.3E-37 257.7 35.2 323 237-565 22-355 (603)
36 KOG0295 WD40 repeat-containing 100.0 4.8E-34 1E-38 258.7 20.2 252 259-516 137-405 (406)
37 KOG0296 Angio-associated migra 100.0 2.5E-32 5.4E-37 247.8 30.5 287 264-560 98-398 (399)
38 KOG0281 Beta-TrCP (transducin 100.0 1.5E-34 3.3E-39 260.0 14.6 273 271-565 196-482 (499)
39 KOG0643 Translation initiation 100.0 3.2E-32 7E-37 237.0 27.8 285 267-561 5-318 (327)
40 KOG1407 WD40 repeat protein [F 100.0 5.1E-32 1.1E-36 235.1 27.5 286 266-560 14-311 (313)
41 KOG0276 Vesicle coat complex C 100.0 4.7E-32 1E-36 261.4 28.7 305 265-578 6-317 (794)
42 KOG0283 WD40 repeat-containing 100.0 1.5E-32 3.3E-37 275.4 25.5 249 264-517 258-576 (712)
43 KOG0306 WD40-repeat-containing 100.0 1.9E-31 4.1E-36 262.5 32.3 321 243-580 85-647 (888)
44 KOG0284 Polyadenylation factor 100.0 7.4E-34 1.6E-38 261.0 14.5 271 232-516 104-379 (464)
45 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.6E-37 247.9 22.2 255 306-567 140-396 (460)
46 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-30 2.7E-35 233.4 33.8 292 263-564 5-307 (311)
47 KOG0313 Microtubule binding pr 100.0 2.3E-31 5.1E-36 242.6 25.6 287 261-560 95-418 (423)
48 KOG0306 WD40-repeat-containing 100.0 2.1E-31 4.5E-36 262.2 26.8 287 266-563 367-667 (888)
49 KOG0772 Uncharacterized conser 100.0 2.4E-31 5.1E-36 251.2 24.8 300 257-558 152-485 (641)
50 KOG0292 Vesicle coat complex C 100.0 3.2E-31 7E-36 264.9 26.9 290 267-564 4-325 (1202)
51 KOG0319 WD40-repeat-containing 100.0 2.7E-31 5.8E-36 261.4 25.7 308 239-562 297-621 (775)
52 KOG0276 Vesicle coat complex C 100.0 1.7E-31 3.6E-36 257.7 23.1 254 311-567 7-264 (794)
53 KOG0289 mRNA splicing factor [ 100.0 8.7E-30 1.9E-34 236.0 31.1 280 273-559 220-505 (506)
54 KOG0316 Conserved WD40 repeat- 100.0 1.1E-30 2.4E-35 223.4 22.8 252 309-569 9-266 (307)
55 KOG0266 WD40 repeat-containing 100.0 1.8E-29 3.8E-34 258.4 31.4 257 311-569 152-418 (456)
56 cd00200 WD40 WD40 domain, foun 100.0 4E-29 8.6E-34 242.3 32.0 265 311-580 3-274 (289)
57 KOG0281 Beta-TrCP (transducin 100.0 1.7E-31 3.8E-36 240.4 13.5 233 316-565 196-433 (499)
58 KOG0265 U5 snRNP-specific prot 100.0 2E-29 4.4E-34 223.3 24.5 266 308-578 38-319 (338)
59 KOG0277 Peroxisomal targeting 100.0 1.4E-29 3.1E-34 219.1 22.2 280 276-559 12-308 (311)
60 KOG0645 WD40 repeat protein [G 100.0 8.6E-29 1.9E-33 216.3 27.0 268 238-517 30-311 (312)
61 KOG0274 Cdc4 and related F-box 100.0 5.9E-29 1.3E-33 253.3 30.2 281 270-567 206-489 (537)
62 KOG0973 Histone transcription 100.0 2.6E-29 5.7E-34 258.4 26.9 293 271-565 12-360 (942)
63 KOG0292 Vesicle coat complex C 100.0 7.5E-29 1.6E-33 248.0 28.7 305 241-560 27-397 (1202)
64 KOG0647 mRNA export protein (c 100.0 2E-28 4.4E-33 217.2 27.3 278 268-551 23-315 (347)
65 PLN00181 protein SPA1-RELATED; 100.0 3.6E-28 7.8E-33 267.5 36.1 264 293-562 457-740 (793)
66 KOG0299 U3 snoRNP-associated p 100.0 8.1E-29 1.8E-33 231.6 26.2 293 265-560 135-456 (479)
67 KOG0282 mRNA splicing factor [ 100.0 2.8E-30 6E-35 242.8 15.9 265 308-577 205-484 (503)
68 PTZ00421 coronin; Provisional 100.0 1E-27 2.2E-32 244.2 33.7 269 271-541 19-315 (493)
69 KOG0268 Sof1-like rRNA process 100.0 7.3E-30 1.6E-34 231.4 15.8 287 264-563 58-348 (433)
70 KOG0300 WD40 repeat-containing 100.0 1E-28 2.2E-33 220.0 22.2 294 261-563 137-479 (481)
71 KOG0294 WD40 repeat-containing 100.0 6.3E-28 1.4E-32 215.2 26.8 266 287-562 4-283 (362)
72 KOG0641 WD40 repeat protein [G 100.0 2.5E-26 5.5E-31 195.4 33.7 295 259-560 20-349 (350)
73 KOG0305 Anaphase promoting com 100.0 6.8E-28 1.5E-32 236.2 27.7 273 277-562 182-463 (484)
74 KOG0313 Microtubule binding pr 100.0 4.8E-28 1E-32 221.0 24.2 266 237-516 117-417 (423)
75 KOG0283 WD40 repeat-containing 100.0 3.4E-28 7.3E-33 244.3 25.0 247 311-563 260-579 (712)
76 KOG0294 WD40 repeat-containing 100.0 2.4E-27 5.1E-32 211.6 26.9 267 260-537 31-305 (362)
77 KOG0310 Conserved WD40 repeat- 100.0 8.4E-28 1.8E-32 226.5 25.0 280 271-560 25-309 (487)
78 KOG0293 WD40 repeat-containing 100.0 2.8E-28 6.1E-33 224.5 20.9 264 309-577 216-492 (519)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-26 3.7E-31 207.0 30.6 261 308-569 5-271 (311)
80 PTZ00420 coronin; Provisional 100.0 2.5E-26 5.5E-31 234.8 35.2 246 290-541 50-318 (568)
81 KOG0301 Phospholipase A2-activ 100.0 4.1E-27 8.8E-32 230.5 25.9 284 263-562 5-290 (745)
82 KOG0277 Peroxisomal targeting 100.0 6.7E-28 1.5E-32 208.7 17.9 241 271-516 59-308 (311)
83 KOG1407 WD40 repeat protein [F 100.0 3E-27 6.4E-32 205.6 22.0 263 311-579 14-284 (313)
84 KOG1408 WD40 repeat protein [F 100.0 2.8E-27 6.1E-32 231.6 24.3 323 236-561 329-714 (1080)
85 PTZ00421 coronin; Provisional 100.0 7.4E-26 1.6E-30 230.6 34.2 214 266-480 69-298 (493)
86 KOG0278 Serine/threonine kinas 100.0 4.9E-28 1.1E-32 209.0 14.7 252 261-522 48-302 (334)
87 KOG0274 Cdc4 and related F-box 100.0 4.2E-26 9.2E-31 232.5 29.7 267 240-529 223-494 (537)
88 KOG0308 Conserved WD40 repeat- 100.0 2.4E-27 5.3E-32 230.3 18.5 277 282-563 35-330 (735)
89 KOG1539 WD repeat protein [Gen 100.0 2.5E-25 5.3E-30 222.2 32.6 313 261-581 191-631 (910)
90 KOG1273 WD40 repeat protein [G 100.0 4.3E-26 9.2E-31 203.4 24.0 296 259-563 12-325 (405)
91 KOG1036 Mitotic spindle checkp 100.0 3.8E-25 8.3E-30 197.3 30.0 270 271-550 12-294 (323)
92 KOG0305 Anaphase promoting com 100.0 4.7E-26 1E-30 223.3 26.6 278 225-519 178-463 (484)
93 PTZ00420 coronin; Provisional 99.9 7E-25 1.5E-29 224.3 34.9 242 335-578 50-317 (568)
94 KOG0264 Nucleosome remodeling 99.9 3.4E-26 7.4E-31 214.2 21.9 252 270-563 122-407 (422)
95 KOG0275 Conserved WD40 repeat- 99.9 8.9E-27 1.9E-31 208.2 17.1 261 315-578 211-490 (508)
96 KOG2096 WD40 repeat protein [G 99.9 2E-25 4.4E-30 199.4 25.6 289 265-559 79-401 (420)
97 KOG0643 Translation initiation 99.9 4.2E-25 9.1E-30 192.8 26.9 264 312-580 5-300 (327)
98 KOG0647 mRNA export protein (c 99.9 1.5E-25 3.3E-30 198.9 22.8 261 314-580 24-306 (347)
99 KOG0321 WD40 repeat-containing 99.9 7.8E-26 1.7E-30 219.4 22.5 284 278-563 55-394 (720)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-24 1E-28 209.2 35.7 276 284-569 1-288 (300)
101 KOG0289 mRNA splicing factor [ 99.9 3.2E-25 6.9E-30 205.9 25.4 251 260-516 249-505 (506)
102 KOG0639 Transducin-like enhanc 99.9 8.4E-26 1.8E-30 213.1 21.9 282 270-559 417-703 (705)
103 KOG0310 Conserved WD40 repeat- 99.9 8.3E-26 1.8E-30 213.1 21.7 245 264-517 60-309 (487)
104 KOG1332 Vesicle coat complex C 99.9 4.5E-26 9.6E-31 196.4 18.1 247 267-516 6-285 (299)
105 KOG2055 WD40 repeat protein [G 99.9 3E-25 6.5E-30 207.7 23.8 283 272-560 213-512 (514)
106 KOG0973 Histone transcription 99.9 2.7E-25 5.8E-30 229.1 25.5 255 262-519 59-357 (942)
107 KOG0299 U3 snoRNP-associated p 99.9 2.8E-25 6.2E-30 208.0 22.7 263 311-580 136-438 (479)
108 KOG0288 WD40 repeat protein Ti 99.9 3.7E-26 8E-31 210.9 16.2 243 263-514 210-458 (459)
109 KOG0650 WD40 repeat nucleolar 99.9 9.8E-25 2.1E-29 210.2 26.5 291 258-558 386-733 (733)
110 KOG0308 Conserved WD40 repeat- 99.9 1.3E-25 2.8E-30 218.4 20.5 326 234-566 36-399 (735)
111 KOG0640 mRNA cleavage stimulat 99.9 4.4E-25 9.6E-30 196.4 19.5 266 311-579 106-408 (430)
112 KOG4283 Transcription-coupled 99.9 2.9E-24 6.3E-29 190.0 23.7 286 268-559 39-364 (397)
113 KOG0772 Uncharacterized conser 99.9 8.3E-25 1.8E-29 207.2 21.2 272 238-515 182-485 (641)
114 KOG1274 WD40 repeat protein [G 99.9 8.9E-24 1.9E-28 213.6 29.6 275 269-554 10-294 (933)
115 KOG1036 Mitotic spindle checkp 99.9 5.4E-24 1.2E-28 190.0 24.8 257 316-580 12-287 (323)
116 KOG2106 Uncharacterized conser 99.9 1.9E-22 4.2E-27 190.8 33.7 284 264-559 237-625 (626)
117 KOG1063 RNA polymerase II elon 99.9 1.9E-23 4E-28 204.9 27.6 328 242-578 166-625 (764)
118 KOG0641 WD40 repeat protein [G 99.9 7.2E-23 1.6E-27 174.5 27.4 252 262-517 79-349 (350)
119 KOG1445 Tumor-specific antigen 99.9 3E-24 6.5E-29 207.9 21.2 157 422-581 602-778 (1012)
120 KOG0268 Sof1-like rRNA process 99.9 4.5E-25 9.7E-30 200.5 14.6 260 309-580 58-328 (433)
121 KOG2445 Nuclear pore complex c 99.9 3.8E-23 8.2E-28 184.3 25.9 265 269-563 10-321 (361)
122 KOG0269 WD40 repeat-containing 99.9 4.1E-24 8.9E-29 212.0 19.6 288 274-565 41-345 (839)
123 KOG0300 WD40 repeat-containing 99.9 8.5E-24 1.9E-28 188.8 19.6 254 261-519 179-478 (481)
124 KOG4328 WD40 protein [Function 99.9 3E-23 6.5E-28 194.2 23.3 297 264-561 178-496 (498)
125 KOG1408 WD40 repeat protein [F 99.9 5.2E-23 1.1E-27 201.9 25.9 302 275-578 327-694 (1080)
126 KOG2106 Uncharacterized conser 99.9 1.8E-21 3.9E-26 184.3 35.0 289 265-563 193-524 (626)
127 KOG2048 WD40 repeat protein [G 99.9 3.4E-22 7.4E-27 195.9 31.0 281 271-562 24-321 (691)
128 KOG1274 WD40 repeat protein [G 99.9 6.8E-23 1.5E-27 207.2 26.6 263 314-580 10-283 (933)
129 KOG0646 WD40 repeat protein [G 99.9 2.3E-23 5E-28 195.6 21.5 272 285-560 51-350 (476)
130 KOG1539 WD repeat protein [Gen 99.9 1.4E-22 3E-27 202.7 28.1 290 263-560 235-648 (910)
131 KOG0646 WD40 repeat protein [G 99.9 3.5E-23 7.7E-28 194.4 22.1 268 290-567 13-314 (476)
132 KOG0269 WD40 repeat-containing 99.9 3.2E-24 7E-29 212.7 15.8 243 275-519 90-342 (839)
133 KOG1063 RNA polymerase II elon 99.9 7.8E-23 1.7E-27 200.6 25.2 332 229-560 272-699 (764)
134 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.6E-27 199.3 24.8 263 233-517 23-288 (745)
135 KOG1332 Vesicle coat complex C 99.9 6E-23 1.3E-27 177.2 19.8 232 237-473 25-288 (299)
136 KOG1009 Chromatin assembly com 99.9 4.2E-22 9.1E-27 184.1 25.0 292 272-565 13-377 (434)
137 KOG0639 Transducin-like enhanc 99.9 3.4E-23 7.3E-28 195.6 17.7 239 271-516 464-703 (705)
138 KOG0321 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 196.8 21.9 299 239-541 68-429 (720)
139 KOG0264 Nucleosome remodeling 99.9 1.9E-22 4.1E-27 189.2 20.2 236 237-472 139-405 (422)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 183.6 35.3 280 240-539 6-300 (300)
141 KOG2055 WD40 repeat protein [G 99.9 4.7E-22 1E-26 186.4 22.2 261 316-580 212-495 (514)
142 KOG2919 Guanine nucleotide-bin 99.9 1.7E-21 3.6E-26 174.9 22.6 273 277-552 54-362 (406)
143 KOG4227 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 179.0 22.3 293 265-560 49-387 (609)
144 KOG0267 Microtubule severing p 99.9 1.7E-23 3.7E-28 206.1 10.0 254 284-551 4-259 (825)
145 KOG1034 Transcriptional repres 99.9 3E-21 6.4E-26 173.7 22.5 291 265-560 31-383 (385)
146 KOG2048 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 184.1 28.7 245 316-564 24-279 (691)
147 KOG0270 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 182.8 19.4 240 283-564 191-453 (463)
148 KOG0267 Microtubule severing p 99.9 5.7E-23 1.2E-27 202.3 10.2 237 266-509 22-260 (825)
149 KOG0307 Vesicle coat complex C 99.9 2.4E-22 5.2E-27 208.3 13.8 284 277-563 11-330 (1049)
150 KOG1538 Uncharacterized conser 99.9 1.5E-20 3.2E-25 183.5 22.9 273 274-562 14-295 (1081)
151 KOG0302 Ribosome Assembly prot 99.9 1.9E-20 4E-25 171.5 21.5 205 268-472 147-379 (440)
152 KOG2096 WD40 repeat protein [G 99.9 4.5E-20 9.8E-25 165.4 23.4 265 311-581 80-387 (420)
153 KOG1334 WD40 repeat protein [G 99.9 2E-21 4.4E-26 183.4 14.8 296 265-563 135-469 (559)
154 KOG0644 Uncharacterized conser 99.9 1.4E-21 3.1E-26 195.2 14.4 296 263-573 181-481 (1113)
155 KOG1538 Uncharacterized conser 99.9 5.6E-20 1.2E-24 179.5 24.3 242 262-516 43-292 (1081)
156 KOG0322 G-protein beta subunit 99.9 6.8E-21 1.5E-25 166.4 15.1 287 261-559 3-322 (323)
157 KOG4283 Transcription-coupled 99.9 8.5E-20 1.8E-24 161.9 21.9 273 235-516 56-364 (397)
158 KOG4378 Nuclear protein COP1 [ 99.9 3.6E-20 7.9E-25 175.1 20.2 261 274-541 36-305 (673)
159 KOG4378 Nuclear protein COP1 [ 99.9 2.3E-20 5E-25 176.4 17.9 257 229-494 39-303 (673)
160 KOG0650 WD40 repeat nucleolar 99.9 5E-20 1.1E-24 178.0 20.2 244 308-558 391-678 (733)
161 KOG1273 WD40 repeat protein [G 99.9 6.4E-20 1.4E-24 164.2 18.8 243 320-566 26-286 (405)
162 KOG0303 Actin-binding protein 99.8 1.5E-19 3.3E-24 166.5 21.0 211 267-478 76-301 (472)
163 KOG4328 WD40 protein [Function 99.8 1.6E-19 3.4E-24 169.5 20.3 253 309-566 178-456 (498)
164 KOG1188 WD40 repeat protein [G 99.8 1.9E-19 4.2E-24 163.1 19.3 270 285-560 41-346 (376)
165 KOG1310 WD40 repeat protein [G 99.8 1.8E-19 4E-24 172.4 20.1 206 265-472 43-304 (758)
166 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-20 9.3E-25 177.8 15.9 266 265-567 287-568 (577)
167 KOG1007 WD repeat protein TSSC 99.8 5.6E-19 1.2E-23 156.3 21.4 265 292-560 38-361 (370)
168 KOG0302 Ribosome Assembly prot 99.8 5.2E-19 1.1E-23 162.1 21.3 241 311-553 145-432 (440)
169 COG2319 FOG: WD40 repeat [Gene 99.8 4E-17 8.8E-22 167.7 38.3 291 266-563 59-362 (466)
170 KOG1034 Transcriptional repres 99.8 5.5E-20 1.2E-24 165.6 14.5 243 270-517 87-383 (385)
171 KOG1963 WD40 repeat protein [G 99.8 5.7E-18 1.2E-22 171.7 30.5 289 270-562 203-540 (792)
172 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 3E-21 163.7 39.7 288 262-561 145-443 (466)
173 KOG0307 Vesicle coat complex C 99.8 1.1E-19 2.4E-24 188.8 14.7 245 273-520 65-330 (1049)
174 PRK11028 6-phosphogluconolacto 99.8 6.7E-17 1.5E-21 160.3 33.1 269 287-560 5-304 (330)
175 KOG1517 Guanine nucleotide bin 99.8 3.5E-18 7.5E-23 175.4 23.1 292 270-564 1062-1385(1387)
176 KOG1009 Chromatin assembly com 99.8 4.9E-18 1.1E-22 157.4 21.3 281 238-522 29-377 (434)
177 KOG2919 Guanine nucleotide-bin 99.8 1E-17 2.2E-22 150.7 22.5 252 320-577 52-350 (406)
178 KOG1523 Actin-related protein 99.8 2E-17 4.2E-22 148.9 23.5 207 268-474 6-239 (361)
179 KOG1240 Protein kinase contain 99.8 2E-17 4.3E-22 172.5 27.0 298 259-558 1035-1431(1431)
180 KOG0270 WD40 repeat-containing 99.8 3.9E-18 8.4E-23 159.8 19.6 202 320-564 176-408 (463)
181 KOG0303 Actin-binding protein 99.8 1.2E-17 2.5E-22 154.2 22.0 208 311-521 75-298 (472)
182 KOG0290 Conserved WD40 repeat- 99.8 8.1E-18 1.8E-22 149.2 19.9 250 274-564 46-322 (364)
183 KOG0649 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 136.2 25.0 270 273-557 11-313 (325)
184 KOG1587 Cytoplasmic dynein int 99.8 1.6E-16 3.6E-21 161.1 27.5 262 294-562 222-518 (555)
185 KOG2445 Nuclear pore complex c 99.8 1.1E-16 2.3E-21 143.3 22.0 210 313-561 9-257 (361)
186 PRK11028 6-phosphogluconolacto 99.8 1.8E-15 3.8E-20 150.2 32.4 272 238-517 5-304 (330)
187 KOG0644 Uncharacterized conser 99.8 1.3E-18 2.9E-23 174.2 8.7 246 308-566 181-432 (1113)
188 KOG4227 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 147.4 19.0 250 309-561 48-323 (609)
189 PRK01742 tolB translocation pr 99.7 3.5E-16 7.6E-21 160.0 23.1 233 293-540 183-426 (429)
190 KOG1963 WD40 repeat protein [G 99.7 4.8E-15 1E-19 150.7 30.5 295 265-563 154-490 (792)
191 KOG1007 WD repeat protein TSSC 99.7 3.7E-16 8.1E-21 138.6 19.1 249 265-517 56-361 (370)
192 KOG4497 Uncharacterized conser 99.7 1E-15 2.2E-20 138.2 21.3 280 277-564 13-395 (447)
193 KOG0771 Prolactin regulatory e 99.7 7.5E-17 1.6E-21 150.8 14.4 192 276-472 148-355 (398)
194 KOG1524 WD40 repeat-containing 99.7 3.9E-16 8.4E-21 149.5 19.1 261 270-556 12-282 (737)
195 KOG1587 Cytoplasmic dynein int 99.7 8.1E-16 1.7E-20 156.1 22.6 245 271-518 241-517 (555)
196 KOG1445 Tumor-specific antigen 99.7 1.9E-16 4.1E-21 154.3 17.1 259 280-541 587-871 (1012)
197 PF02239 Cytochrom_D1: Cytochr 99.7 2.8E-14 6E-19 141.2 32.8 278 287-569 9-356 (369)
198 KOG1188 WD40 repeat protein [G 99.7 4E-16 8.6E-21 141.8 17.3 268 238-516 43-345 (376)
199 KOG0649 WD40 repeat protein [G 99.7 2.2E-14 4.7E-19 124.5 25.8 228 237-472 24-275 (325)
200 KOG1240 Protein kinase contain 99.7 6.1E-15 1.3E-19 154.3 25.7 256 308-565 1039-1339(1431)
201 KOG0290 Conserved WD40 repeat- 99.7 1.8E-15 4E-20 134.4 18.6 244 270-556 94-361 (364)
202 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-16 7.7E-21 151.0 14.5 241 237-481 308-570 (577)
203 PRK03629 tolB translocation pr 99.7 3.3E-14 7.1E-19 145.1 29.1 233 294-539 179-427 (429)
204 KOG2139 WD40 repeat protein [G 99.7 3.2E-14 7E-19 130.3 25.2 272 234-516 109-430 (445)
205 KOG2394 WD40 protein DMR-N9 [G 99.7 4.3E-15 9.3E-20 142.6 20.1 276 274-567 125-459 (636)
206 KOG0771 Prolactin regulatory e 99.7 1.3E-14 2.7E-19 136.0 22.3 196 363-561 148-355 (398)
207 PRK01742 tolB translocation pr 99.7 1.1E-14 2.3E-19 149.1 24.0 228 338-577 183-425 (429)
208 KOG2110 Uncharacterized conser 99.7 1.1E-12 2.4E-17 121.0 34.2 236 271-518 4-249 (391)
209 KOG1524 WD40 repeat-containing 99.7 2.6E-15 5.7E-20 143.9 16.8 249 315-580 12-269 (737)
210 KOG2110 Uncharacterized conser 99.7 8E-14 1.7E-18 128.4 25.3 236 317-564 5-252 (391)
211 KOG2139 WD40 repeat protein [G 99.7 1.9E-14 4.2E-19 131.8 21.2 191 274-471 100-309 (445)
212 KOG2321 WD40 repeat protein [G 99.7 3.7E-14 8E-19 137.3 24.1 279 271-561 50-344 (703)
213 KOG3881 Uncharacterized conser 99.6 1.6E-14 3.5E-19 133.7 19.7 244 316-567 54-327 (412)
214 KOG1310 WD40 repeat protein [G 99.6 2.4E-15 5.3E-20 144.5 14.5 217 309-525 42-311 (758)
215 KOG1517 Guanine nucleotide bin 99.6 2.9E-14 6.4E-19 147.0 22.0 245 318-565 1065-1338(1387)
216 KOG1272 WD40-repeat-containing 99.6 2.4E-15 5.3E-20 141.9 13.0 264 274-552 131-401 (545)
217 PRK04922 tolB translocation pr 99.6 1.7E-13 3.6E-18 140.7 27.0 233 294-539 184-432 (433)
218 PRK02889 tolB translocation pr 99.6 3.5E-13 7.7E-18 137.7 27.7 234 294-540 176-425 (427)
219 KOG1523 Actin-related protein 99.6 1.2E-13 2.6E-18 124.8 20.5 232 315-551 8-269 (361)
220 PRK03629 tolB translocation pr 99.6 3.5E-13 7.5E-18 137.6 26.6 213 266-486 192-419 (429)
221 PRK05137 tolB translocation pr 99.6 9.2E-13 2E-17 135.4 29.1 233 294-540 182-433 (435)
222 KOG1272 WD40-repeat-containing 99.6 4.3E-15 9.3E-20 140.2 10.3 229 319-559 131-361 (545)
223 KOG1354 Serine/threonine prote 99.6 4.9E-13 1.1E-17 121.9 22.7 247 271-519 24-361 (433)
224 PRK05137 tolB translocation pr 99.6 4.4E-13 9.5E-18 137.7 25.6 205 263-473 192-414 (435)
225 PRK04922 tolB translocation pr 99.6 7.7E-13 1.7E-17 135.8 24.7 202 265-472 196-412 (433)
226 KOG1409 Uncharacterized conser 99.6 3.1E-13 6.7E-18 123.3 18.7 249 262-518 14-271 (404)
227 KOG1334 WD40 repeat protein [G 99.6 3.9E-14 8.4E-19 134.6 12.9 260 308-568 133-432 (559)
228 PRK02889 tolB translocation pr 99.6 1.2E-12 2.5E-17 134.0 24.8 201 265-471 188-403 (427)
229 KOG3881 Uncharacterized conser 99.6 7.8E-13 1.7E-17 122.8 20.6 262 271-540 54-342 (412)
230 KOG2315 Predicted translation 99.5 6.6E-12 1.4E-16 122.0 27.5 274 273-564 35-394 (566)
231 KOG0322 G-protein beta subunit 99.5 2.7E-13 5.9E-18 119.2 15.3 270 229-516 19-322 (323)
232 PF10282 Lactonase: Lactonase, 99.5 2.1E-10 4.5E-15 113.9 36.8 263 272-537 36-345 (345)
233 KOG2041 WD40 repeat protein [G 99.5 1.7E-12 3.7E-17 128.8 21.3 279 272-559 14-336 (1189)
234 PF10282 Lactonase: Lactonase, 99.5 3.5E-10 7.6E-15 112.3 37.8 277 287-566 2-330 (345)
235 KOG4497 Uncharacterized conser 99.5 1.2E-11 2.5E-16 112.4 24.1 304 236-553 13-425 (447)
236 KOG2111 Uncharacterized conser 99.5 1.3E-11 2.8E-16 111.8 24.2 235 320-565 8-261 (346)
237 KOG2314 Translation initiation 99.5 6.3E-12 1.4E-16 121.6 23.5 276 275-564 213-577 (698)
238 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-13 4.5E-18 131.3 13.2 140 272-411 219-384 (636)
239 PF08662 eIF2A: Eukaryotic tra 99.5 4.7E-12 1E-16 113.9 21.1 149 321-472 9-180 (194)
240 KOG2321 WD40 repeat protein [G 99.5 5.4E-12 1.2E-16 122.6 22.0 259 315-580 49-326 (703)
241 PF08662 eIF2A: Eukaryotic tra 99.5 4.7E-12 1E-16 113.9 20.4 152 276-434 9-182 (194)
242 TIGR02800 propeller_TolB tol-p 99.5 2.6E-11 5.5E-16 124.7 28.0 233 293-538 169-417 (417)
243 PRK04792 tolB translocation pr 99.5 2.6E-11 5.5E-16 124.5 27.4 232 295-539 199-446 (448)
244 PF02239 Cytochrom_D1: Cytochr 99.5 1.3E-10 2.9E-15 115.1 31.3 258 262-526 26-356 (369)
245 PRK00178 tolB translocation pr 99.5 4.7E-11 1E-15 122.9 28.3 233 295-540 180-428 (430)
246 KOG2111 Uncharacterized conser 99.5 3.6E-10 7.8E-15 102.6 30.0 235 274-518 7-257 (346)
247 KOG1832 HIV-1 Vpr-binding prot 99.5 5.7E-14 1.2E-18 142.2 5.7 296 220-580 1013-1314(1516)
248 TIGR02800 propeller_TolB tol-p 99.5 2.2E-11 4.7E-16 125.3 24.8 201 265-471 182-397 (417)
249 PRK00178 tolB translocation pr 99.4 8.6E-11 1.9E-15 121.0 26.6 202 265-472 191-407 (430)
250 COG5354 Uncharacterized protei 99.4 2.7E-10 5.9E-15 109.6 26.8 278 273-565 72-400 (561)
251 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.7E-09 5.8E-14 103.3 32.6 265 294-568 27-338 (352)
252 PRK04792 tolB translocation pr 99.4 1.3E-10 2.8E-15 119.3 24.6 209 266-482 211-434 (448)
253 KOG0974 WD-repeat protein WDR6 99.4 5.2E-11 1.1E-15 123.9 21.1 152 278-434 139-291 (967)
254 COG2706 3-carboxymuconate cycl 99.4 3.9E-09 8.5E-14 98.2 31.0 267 293-561 15-322 (346)
255 KOG0974 WD-repeat protein WDR6 99.3 6.8E-11 1.5E-15 123.0 19.8 277 272-565 7-293 (967)
256 COG2706 3-carboxymuconate cycl 99.3 8.7E-09 1.9E-13 95.9 31.6 270 269-538 36-345 (346)
257 KOG1354 Serine/threonine prote 99.3 3E-11 6.5E-16 110.4 15.1 245 317-564 25-363 (433)
258 KOG0280 Uncharacterized conser 99.3 6.3E-10 1.4E-14 99.9 22.9 267 293-563 45-336 (339)
259 KOG4547 WD40 repeat-containing 99.3 5E-10 1.1E-14 110.0 24.0 190 281-472 2-221 (541)
260 PF04762 IKI3: IKI3 family; I 99.3 2.5E-09 5.4E-14 117.6 31.0 284 270-562 73-458 (928)
261 KOG1064 RAVE (regulator of V-A 99.3 2.9E-11 6.3E-16 131.5 15.0 243 287-553 2183-2439(2439)
262 PRK01029 tolB translocation pr 99.3 2.3E-09 4.9E-14 109.3 28.3 236 295-541 166-426 (428)
263 COG5354 Uncharacterized protei 99.3 1.1E-09 2.3E-14 105.6 23.7 298 268-581 28-373 (561)
264 COG4946 Uncharacterized protei 99.3 7.9E-09 1.7E-13 98.7 28.6 175 280-461 327-508 (668)
265 PRK01029 tolB translocation pr 99.3 1.3E-09 2.8E-14 111.0 24.5 202 267-473 179-405 (428)
266 KOG1409 Uncharacterized conser 99.3 2.2E-10 4.8E-15 104.9 16.1 251 308-564 15-274 (404)
267 KOG1912 WD40 repeat protein [G 99.2 3.1E-09 6.7E-14 107.2 24.5 303 258-565 41-511 (1062)
268 TIGR03300 assembly_YfgL outer 99.2 1E-08 2.2E-13 103.8 29.0 258 283-557 104-376 (377)
269 KOG4190 Uncharacterized conser 99.2 7.1E-11 1.5E-15 114.3 10.7 281 265-556 728-1032(1034)
270 TIGR03300 assembly_YfgL outer 99.2 1.9E-08 4.1E-13 101.8 29.1 267 283-569 64-347 (377)
271 KOG1064 RAVE (regulator of V-A 99.2 9.1E-11 2E-15 127.8 12.2 199 267-481 2203-2407(2439)
272 KOG4547 WD40 repeat-containing 99.2 9.1E-10 2E-14 108.2 17.9 207 327-561 3-221 (541)
273 PLN02919 haloacid dehalogenase 99.2 2.2E-08 4.7E-13 112.4 31.0 242 321-564 571-892 (1057)
274 KOG2659 LisH motif-containing 99.2 1.4E-10 2.9E-15 102.0 10.6 118 61-178 24-148 (228)
275 PF08450 SGL: SMP-30/Gluconola 99.2 1.6E-07 3.5E-12 88.8 31.5 222 322-548 4-244 (246)
276 KOG0280 Uncharacterized conser 99.2 5E-09 1.1E-13 94.2 19.2 202 272-473 69-286 (339)
277 KOG2041 WD40 repeat protein [G 99.2 6E-10 1.3E-14 111.2 14.3 233 316-551 13-279 (1189)
278 PLN02919 haloacid dehalogenase 99.2 5.5E-08 1.2E-12 109.2 31.7 238 277-521 572-892 (1057)
279 KOG1912 WD40 repeat protein [G 99.1 4.5E-09 9.7E-14 106.1 20.3 285 275-566 18-370 (1062)
280 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.5E-07 3.3E-12 91.3 30.1 235 280-526 53-339 (352)
281 KOG0309 Conserved WD40 repeat- 99.1 6.6E-10 1.4E-14 111.3 13.5 284 272-562 24-341 (1081)
282 KOG2315 Predicted translation 99.1 6.9E-08 1.5E-12 94.6 26.6 274 295-581 12-368 (566)
283 PF04762 IKI3: IKI3 family; I 99.1 2E-07 4.4E-12 102.8 33.1 303 274-580 23-402 (928)
284 PRK04043 tolB translocation pr 99.1 7.7E-08 1.7E-12 97.4 27.4 191 274-472 189-401 (419)
285 COG5170 CDC55 Serine/threonine 99.1 5.9E-09 1.3E-13 94.4 16.7 244 271-516 25-366 (460)
286 PF15492 Nbas_N: Neuroblastoma 99.1 1.3E-07 2.7E-12 85.7 24.7 240 277-567 2-266 (282)
287 PRK04043 tolB translocation pr 99.1 1.9E-07 4.1E-12 94.6 29.0 207 319-535 189-417 (419)
288 COG4946 Uncharacterized protei 99.1 1.1E-07 2.5E-12 91.0 24.5 188 281-473 275-479 (668)
289 KOG4532 WD40-like repeat conta 99.0 6.2E-08 1.3E-12 86.2 20.7 257 292-561 50-332 (344)
290 KOG0882 Cyclophilin-related pe 99.0 5.3E-09 1.1E-13 99.3 14.3 250 271-525 8-313 (558)
291 KOG4190 Uncharacterized conser 99.0 7.3E-10 1.6E-14 107.4 8.7 237 310-557 728-985 (1034)
292 KOG2314 Translation initiation 98.9 1.3E-07 2.8E-12 92.4 20.5 254 320-581 213-506 (698)
293 KOG2695 WD40 repeat protein [G 98.9 3.3E-09 7.1E-14 97.4 9.1 170 364-538 216-401 (425)
294 PF13360 PQQ_2: PQQ-like domai 98.9 5.1E-07 1.1E-11 85.0 24.2 220 338-566 2-236 (238)
295 KOG4532 WD40-like repeat conta 98.9 3.6E-07 7.9E-12 81.4 21.0 191 283-475 83-286 (344)
296 PRK11138 outer membrane biogen 98.9 7.1E-07 1.5E-11 90.7 26.4 258 284-559 120-393 (394)
297 KOG0309 Conserved WD40 repeat- 98.9 1.5E-08 3.3E-13 101.8 12.8 244 275-518 70-340 (1081)
298 PF08450 SGL: SMP-30/Gluconola 98.9 9.2E-06 2E-10 76.8 31.2 215 277-505 4-243 (246)
299 KOG1645 RING-finger-containing 98.8 4E-07 8.7E-12 85.7 19.2 257 296-560 175-461 (463)
300 PF13360 PQQ_2: PQQ-like domai 98.8 2.6E-06 5.7E-11 80.1 24.4 219 293-523 2-236 (238)
301 PRK11138 outer membrane biogen 98.8 3.2E-06 6.8E-11 86.0 26.0 270 284-569 69-362 (394)
302 KOG4714 Nucleoporin [Nuclear s 98.8 7.6E-08 1.6E-12 85.3 11.9 196 320-518 39-255 (319)
303 COG5170 CDC55 Serine/threonine 98.8 7E-08 1.5E-12 87.5 11.3 240 317-559 26-366 (460)
304 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.3E-12 89.6 13.0 157 275-434 65-226 (390)
305 KOG3914 WD repeat protein WDR4 98.8 1.3E-07 2.8E-12 89.1 13.3 162 403-569 64-232 (390)
306 KOG4649 PQQ (pyrrolo-quinoline 98.7 2.5E-05 5.3E-10 69.8 26.0 264 283-562 62-353 (354)
307 PF15492 Nbas_N: Neuroblastoma 98.7 3E-06 6.5E-11 77.0 20.6 198 274-485 45-272 (282)
308 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.5E-05 3.1E-10 79.7 27.7 264 281-551 1-349 (353)
309 KOG2695 WD40 repeat protein [G 98.7 5E-08 1.1E-12 89.8 9.1 152 417-572 228-388 (425)
310 PF00400 WD40: WD domain, G-be 98.7 3.9E-08 8.5E-13 62.9 5.8 38 263-300 2-39 (39)
311 PF07433 DUF1513: Protein of u 98.7 1.9E-05 4.2E-10 74.0 25.7 201 277-481 9-256 (305)
312 KOG1920 IkappaB kinase complex 98.7 5.3E-06 1.1E-10 88.9 23.1 198 271-473 67-324 (1265)
313 PF00400 WD40: WD domain, G-be 98.7 7E-08 1.5E-12 61.7 5.9 39 519-558 1-39 (39)
314 KOG1920 IkappaB kinase complex 98.6 3.1E-05 6.7E-10 83.3 27.5 239 317-559 68-364 (1265)
315 KOG4714 Nucleoporin [Nuclear s 98.6 3.9E-07 8.5E-12 80.9 11.4 164 267-432 84-255 (319)
316 KOG2114 Vacuolar assembly/sort 98.6 1E-05 2.2E-10 83.8 22.6 208 319-534 27-261 (933)
317 PF00930 DPPIV_N: Dipeptidyl p 98.6 9.5E-06 2.1E-10 81.0 21.1 252 326-580 1-340 (353)
318 PF14583 Pectate_lyase22: Olig 98.5 0.00032 6.9E-09 68.1 29.5 271 279-560 42-381 (386)
319 PF07433 DUF1513: Protein of u 98.5 4.1E-05 8.8E-10 71.9 22.7 193 263-466 47-280 (305)
320 KOG2114 Vacuolar assembly/sort 98.5 1.3E-05 2.8E-10 83.0 20.9 204 274-485 27-257 (933)
321 KOG1645 RING-finger-containing 98.5 2.5E-05 5.4E-10 74.0 21.0 245 262-517 183-461 (463)
322 PF14583 Pectate_lyase22: Olig 98.5 0.00015 3.3E-09 70.3 25.6 253 324-580 42-363 (386)
323 KOG1832 HIV-1 Vpr-binding prot 98.5 1.1E-07 2.4E-12 97.7 4.5 277 262-563 1091-1401(1516)
324 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00055 1.2E-08 61.4 26.6 260 285-559 24-299 (354)
325 KOG3617 WD40 and TPR repeat-co 98.5 4.5E-06 9.8E-11 85.8 15.2 109 276-389 19-131 (1416)
326 KOG1275 PAB-dependent poly(A) 98.4 5.9E-06 1.3E-10 85.8 15.8 180 283-470 146-341 (1118)
327 PRK02888 nitrous-oxide reducta 98.4 0.00014 3E-09 74.8 25.1 227 287-518 69-405 (635)
328 KOG1275 PAB-dependent poly(A) 98.4 5.1E-06 1.1E-10 86.2 14.9 183 328-515 146-340 (1118)
329 PF11768 DUF3312: Protein of u 98.4 0.00052 1.1E-08 69.0 27.9 120 361-480 207-338 (545)
330 PF08513 LisH: LisH; InterPro 98.4 4.3E-07 9.4E-12 51.6 3.8 27 64-90 1-27 (27)
331 KOG0882 Cyclophilin-related pe 98.4 2.9E-06 6.2E-11 81.2 11.3 248 315-565 7-310 (558)
332 PF06433 Me-amine-dh_H: Methyl 98.4 0.00071 1.5E-08 64.5 26.8 243 277-527 40-330 (342)
333 cd00216 PQQ_DH Dehydrogenases 98.4 0.00036 7.7E-09 72.9 27.3 268 284-569 61-433 (488)
334 KOG2066 Vacuolar assembly/sort 98.3 3.2E-05 6.9E-10 79.6 17.0 182 360-561 40-234 (846)
335 KOG3621 WD40 repeat-containing 98.3 0.00011 2.5E-09 74.7 20.5 118 271-390 32-155 (726)
336 KOG1008 Uncharacterized conser 98.3 6.4E-07 1.4E-11 89.3 3.7 242 318-561 57-336 (783)
337 KOG2066 Vacuolar assembly/sort 98.3 2.6E-05 5.6E-10 80.3 15.1 182 317-517 39-233 (846)
338 KOG0396 Uncharacterized conser 98.2 1.5E-05 3.2E-10 74.8 12.0 121 62-182 114-240 (389)
339 KOG1008 Uncharacterized conser 98.2 4.3E-07 9.4E-12 90.5 1.9 198 272-472 56-276 (783)
340 smart00667 LisH Lissencephaly 98.2 2.9E-06 6.2E-11 52.2 4.2 32 62-93 2-33 (34)
341 PF11768 DUF3312: Protein of u 98.2 4.4E-05 9.5E-10 76.5 14.4 116 275-393 208-333 (545)
342 PF06433 Me-amine-dh_H: Methyl 98.1 0.0031 6.6E-08 60.3 25.6 266 294-569 17-329 (342)
343 COG3391 Uncharacterized conser 98.1 0.0069 1.5E-07 61.1 29.9 258 274-540 32-309 (381)
344 PF04053 Coatomer_WDAD: Coatom 98.1 0.00045 9.8E-09 70.0 21.3 224 266-517 26-262 (443)
345 COG0823 TolB Periplasmic compo 98.1 0.00047 1E-08 69.7 21.3 195 340-542 174-382 (425)
346 PRK02888 nitrous-oxide reducta 98.1 0.00069 1.5E-08 69.9 22.4 216 280-506 200-450 (635)
347 cd00216 PQQ_DH Dehydrogenases 98.1 0.0022 4.8E-08 67.0 27.1 238 285-527 111-434 (488)
348 PF02897 Peptidase_S9_N: Proly 98.1 0.0064 1.4E-07 62.4 30.1 241 320-565 126-409 (414)
349 PF10607 CLTH: CTLH/CRA C-term 98.1 7.7E-06 1.7E-10 70.1 6.2 134 98-231 4-139 (145)
350 PF00780 CNH: CNH domain; Int 98.1 0.0043 9.3E-08 59.7 25.9 235 328-579 6-274 (275)
351 KOG3617 WD40 and TPR repeat-co 98.1 0.00024 5.3E-09 73.5 17.3 254 239-507 35-375 (1416)
352 PF04841 Vps16_N: Vps16, N-ter 98.0 0.017 3.7E-07 58.6 30.8 260 278-568 34-322 (410)
353 COG0823 TolB Periplasmic compo 98.0 0.00048 1E-08 69.6 19.3 191 265-461 185-389 (425)
354 smart00668 CTLH C-terminal to 98.0 3.1E-06 6.8E-11 59.5 2.5 53 98-150 4-56 (58)
355 PF04053 Coatomer_WDAD: Coatom 98.0 0.0036 7.8E-08 63.6 25.0 226 314-563 29-265 (443)
356 PF06977 SdiA-regulated: SdiA- 98.0 0.0065 1.4E-07 56.5 24.6 201 354-557 16-247 (248)
357 PF08596 Lgl_C: Lethal giant l 98.0 0.0012 2.6E-08 66.1 21.1 258 274-550 3-326 (395)
358 PF06977 SdiA-regulated: SdiA- 98.0 0.0028 6.1E-08 58.9 21.6 199 266-468 15-247 (248)
359 KOG3621 WD40 repeat-containing 98.0 0.0006 1.3E-08 69.6 18.3 135 316-450 32-179 (726)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.022 4.8E-07 59.9 30.0 279 284-569 69-499 (527)
361 PF08596 Lgl_C: Lethal giant l 97.9 0.0018 4E-08 64.8 21.0 238 319-566 3-296 (395)
362 PF00780 CNH: CNH domain; Int 97.9 0.015 3.4E-07 55.8 27.1 226 282-528 5-266 (275)
363 PF04841 Vps16_N: Vps16, N-ter 97.9 0.019 4.1E-07 58.3 28.6 207 340-563 62-290 (410)
364 PF08553 VID27: VID27 cytoplas 97.9 0.017 3.7E-07 62.2 28.6 194 271-470 429-646 (794)
365 COG3391 Uncharacterized conser 97.9 0.007 1.5E-07 61.0 24.9 201 275-481 76-292 (381)
366 PF03178 CPSF_A: CPSF A subuni 97.9 0.0083 1.8E-07 59.1 24.9 213 339-557 2-262 (321)
367 KOG1897 Damage-specific DNA bi 97.9 0.059 1.3E-06 57.9 30.9 282 272-561 530-899 (1096)
368 PF02897 Peptidase_S9_N: Proly 97.8 0.052 1.1E-06 55.7 31.4 240 274-522 125-409 (414)
369 KOG4441 Proteins containing BT 97.8 0.03 6.5E-07 59.3 29.0 228 282-519 283-548 (571)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.035 7.7E-07 55.5 27.4 85 442-527 308-408 (415)
371 COG3386 Gluconolactonase [Carb 97.7 0.023 4.9E-07 54.9 24.0 220 324-551 31-277 (307)
372 PF03178 CPSF_A: CPSF A subuni 97.7 0.018 3.8E-07 56.8 22.9 179 284-468 42-262 (321)
373 KOG2444 WD40 repeat protein [G 97.6 6.5E-05 1.4E-09 66.3 4.7 141 416-563 33-180 (238)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.098 2.1E-06 55.0 29.0 236 285-528 121-501 (527)
375 smart00320 WD40 WD40 repeats. 97.6 0.00017 3.6E-09 45.0 4.8 38 263-300 3-40 (40)
376 KOG4640 Anaphase-promoting com 97.6 0.00045 9.7E-09 69.6 9.7 94 271-368 19-114 (665)
377 COG3386 Gluconolactonase [Carb 97.5 0.03 6.6E-07 54.0 21.9 217 279-507 31-275 (307)
378 smart00320 WD40 WD40 repeats. 97.5 0.00033 7.1E-09 43.6 5.6 39 519-558 2-40 (40)
379 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0099 2.1E-07 46.8 13.9 100 320-426 2-109 (111)
380 KOG4640 Anaphase-promoting com 97.4 0.00071 1.5E-08 68.2 9.3 93 317-410 20-114 (665)
381 KOG4441 Proteins containing BT 97.4 0.017 3.7E-07 61.2 20.2 229 329-565 285-551 (571)
382 PHA02713 hypothetical protein; 97.4 0.015 3.2E-07 61.7 19.6 224 295-529 273-545 (557)
383 PRK13616 lipoprotein LpqB; Pro 97.4 0.019 4E-07 60.9 19.6 182 273-465 350-562 (591)
384 KOG4499 Ca2+-binding protein R 97.3 0.061 1.3E-06 48.0 19.0 213 331-550 29-275 (310)
385 COG3204 Uncharacterized protei 97.3 0.06 1.3E-06 50.0 19.6 161 313-473 81-265 (316)
386 KOG2079 Vacuolar assembly/sort 97.3 0.0074 1.6E-07 64.9 15.7 102 283-388 98-202 (1206)
387 PRK13616 lipoprotein LpqB; Pro 97.3 0.022 4.7E-07 60.4 19.2 148 316-471 348-525 (591)
388 PF14727 PHTB1_N: PTHB1 N-term 97.3 0.26 5.6E-06 49.6 31.1 273 283-561 36-361 (418)
389 PHA02713 hypothetical protein; 97.3 0.021 4.5E-07 60.6 18.7 187 370-565 303-538 (557)
390 KOG2395 Protein involved in va 97.1 0.0099 2.2E-07 59.1 13.5 141 328-471 344-500 (644)
391 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.052 1.1E-06 42.8 14.8 100 275-384 2-109 (111)
392 PF14870 PSII_BNR: Photosynthe 97.1 0.27 6E-06 47.2 29.4 273 272-557 16-301 (302)
393 PF08553 VID27: VID27 cytoplas 97.1 0.0074 1.6E-07 64.9 12.8 137 421-560 502-647 (794)
394 COG3204 Uncharacterized protei 97.0 0.28 6.1E-06 45.7 20.3 168 357-525 83-270 (316)
395 PRK10115 protease 2; Provision 96.9 0.91 2E-05 49.6 32.7 239 273-520 127-397 (686)
396 COG3490 Uncharacterized protei 96.9 0.032 7E-07 51.3 13.6 199 262-470 109-347 (366)
397 KOG2395 Protein involved in va 96.8 0.011 2.3E-07 58.9 10.8 138 420-559 353-499 (644)
398 KOG2817 Predicted E3 ubiquitin 96.8 0.0091 2E-07 57.4 9.9 101 65-167 118-229 (394)
399 PRK10115 protease 2; Provision 96.8 1.2 2.6E-05 48.7 30.1 237 319-563 128-397 (686)
400 PF05096 Glu_cyclase_2: Glutam 96.7 0.49 1.1E-05 44.0 24.4 193 351-548 35-249 (264)
401 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.54 1.2E-05 44.2 24.9 229 320-550 25-323 (336)
402 PF14870 PSII_BNR: Photosynthe 96.7 0.62 1.3E-05 44.8 27.4 229 274-514 63-301 (302)
403 COG5276 Uncharacterized conser 96.7 0.57 1.2E-05 43.6 26.3 273 272-560 86-369 (370)
404 COG3490 Uncharacterized protei 96.5 0.66 1.4E-05 43.0 20.6 232 322-559 72-347 (366)
405 TIGR03074 PQQ_membr_DH membran 96.5 0.79 1.7E-05 50.3 23.1 195 329-525 194-485 (764)
406 PF05694 SBP56: 56kDa selenium 96.5 1.1 2.4E-05 44.7 23.3 196 283-478 86-349 (461)
407 PF07995 GSDH: Glucose / Sorbo 96.4 1.1 2.4E-05 44.2 27.5 57 498-555 270-330 (331)
408 PHA03098 kelch-like protein; P 96.4 0.13 2.9E-06 54.7 16.5 186 282-473 293-513 (534)
409 PHA03098 kelch-like protein; P 96.3 0.14 3E-06 54.5 16.6 186 328-520 294-514 (534)
410 PF05694 SBP56: 56kDa selenium 96.3 0.8 1.7E-05 45.6 19.8 178 280-460 137-392 (461)
411 PF15390 DUF4613: Domain of un 96.3 0.23 5E-06 50.6 16.4 134 318-452 57-213 (671)
412 KOG1916 Nuclear protein, conta 96.2 0.00062 1.3E-08 71.2 -1.9 130 266-429 126-263 (1283)
413 KOG2444 WD40 repeat protein [G 96.2 0.0042 9.2E-08 55.1 3.2 138 289-431 35-177 (238)
414 PRK13684 Ycf48-like protein; P 96.2 1.6 3.4E-05 43.2 28.3 275 272-560 45-331 (334)
415 PF12894 Apc4_WD40: Anaphase-p 96.1 0.019 4.1E-07 37.7 5.3 34 317-351 11-44 (47)
416 KOG2079 Vacuolar assembly/sort 96.1 0.021 4.6E-07 61.6 8.5 98 412-510 98-198 (1206)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1 2.2E-05 45.4 19.6 107 322-430 6-145 (415)
418 TIGR02604 Piru_Ver_Nterm putat 95.9 0.25 5.3E-06 49.7 14.9 144 274-420 15-202 (367)
419 PF12894 Apc4_WD40: Anaphase-p 95.9 0.029 6.3E-07 36.8 5.4 31 272-302 11-41 (47)
420 PF10168 Nup88: Nuclear pore c 95.9 3.5 7.6E-05 45.0 25.1 94 318-433 85-181 (717)
421 KOG1897 Damage-specific DNA bi 95.8 3.7 8E-05 44.9 33.4 240 273-521 354-619 (1096)
422 COG4257 Vgb Streptogramin lyas 95.8 1.7 3.6E-05 40.3 20.9 233 320-564 64-309 (353)
423 PF15390 DUF4613: Domain of un 95.7 0.43 9.3E-06 48.8 15.2 155 403-563 21-189 (671)
424 TIGR02604 Piru_Ver_Nterm putat 95.6 2.8 6.1E-05 42.1 24.1 140 319-460 15-202 (367)
425 COG5276 Uncharacterized conser 95.6 2 4.3E-05 40.2 22.6 151 317-473 86-243 (370)
426 PHA02790 Kelch-like protein; P 95.6 0.9 2E-05 47.5 18.0 141 328-473 271-425 (480)
427 PHA02790 Kelch-like protein; P 95.6 0.75 1.6E-05 48.1 17.4 146 283-434 271-426 (480)
428 PF10647 Gmad1: Lipoprotein Lp 95.5 2.2 4.8E-05 40.2 21.0 144 274-423 25-187 (253)
429 KOG4499 Ca2+-binding protein R 95.4 1.9 4.1E-05 38.9 18.6 213 286-506 29-273 (310)
430 PF06588 Muskelin_N: Muskelin 95.4 0.018 4E-07 49.9 4.0 36 62-97 164-199 (199)
431 KOG2377 Uncharacterized conser 95.3 2.9 6.4E-05 41.5 18.5 125 293-420 42-172 (657)
432 PF10647 Gmad1: Lipoprotein Lp 95.1 3.1 6.6E-05 39.3 21.2 143 319-464 25-188 (253)
433 PLN02153 epithiospecifier prot 94.5 5.5 0.00012 39.5 21.2 65 370-434 85-170 (341)
434 KOG3630 Nuclear pore complex, 94.5 0.32 6.9E-06 53.3 10.9 146 274-419 102-261 (1405)
435 KOG2247 WD40 repeat-containing 94.5 0.013 2.9E-07 57.7 0.7 240 321-565 38-285 (615)
436 PF10168 Nup88: Nuclear pore c 94.4 3.2 6.9E-05 45.3 18.4 30 271-301 83-112 (717)
437 TIGR03074 PQQ_membr_DH membran 94.4 10 0.00022 42.0 22.5 154 413-567 260-484 (764)
438 KOG2247 WD40 repeat-containing 94.4 0.0053 1.2E-07 60.4 -2.2 148 404-557 37-185 (615)
439 PF12234 Rav1p_C: RAVE protein 94.4 2.3 5.1E-05 45.1 16.7 110 319-430 31-155 (631)
440 KOG3630 Nuclear pore complex, 94.3 0.42 9.1E-06 52.5 11.2 141 319-459 102-261 (1405)
441 KOG2280 Vacuolar assembly/sort 94.0 5.3 0.00012 42.4 18.0 172 294-473 64-248 (829)
442 KOG2280 Vacuolar assembly/sort 94.0 6.1 0.00013 42.0 18.4 196 339-541 64-271 (829)
443 PF14727 PHTB1_N: PTHB1 N-term 93.8 8.4 0.00018 39.0 25.6 144 328-471 36-204 (418)
444 PF05096 Glu_cyclase_2: Glutam 93.8 5.8 0.00013 37.1 22.7 181 274-461 46-250 (264)
445 PLN02153 epithiospecifier prot 93.8 7.8 0.00017 38.5 22.6 149 283-434 32-228 (341)
446 TIGR03548 mutarot_permut cycli 93.7 7.6 0.00016 38.2 21.3 106 328-434 72-197 (323)
447 KOG2377 Uncharacterized conser 93.7 1.1 2.5E-05 44.2 11.9 102 439-542 64-166 (657)
448 PF12234 Rav1p_C: RAVE protein 93.5 2.2 4.8E-05 45.2 14.7 112 273-388 30-155 (631)
449 PLN02193 nitrile-specifier pro 93.4 8.2 0.00018 40.2 18.9 189 328-521 175-414 (470)
450 TIGR03118 PEPCTERM_chp_1 conse 93.3 7.5 0.00016 36.9 22.6 211 274-485 24-292 (336)
451 TIGR03548 mutarot_permut cycli 93.2 9.3 0.0002 37.5 20.0 104 370-473 72-196 (323)
452 COG3823 Glutamine cyclotransfe 93.1 6 0.00013 35.2 15.2 175 370-549 55-248 (262)
453 COG5167 VID27 Protein involved 93.1 0.93 2E-05 45.5 10.4 137 419-560 486-632 (776)
454 TIGR03547 muta_rot_YjhT mutatr 92.8 11 0.00024 37.4 20.7 53 370-422 63-128 (346)
455 COG4257 Vgb Streptogramin lyas 92.4 9.4 0.0002 35.6 24.0 237 274-518 63-306 (353)
456 PLN02193 nitrile-specifier pro 92.1 17 0.00037 37.9 20.0 106 328-434 228-354 (470)
457 PF10313 DUF2415: Uncharacteri 91.9 0.79 1.7E-05 29.2 5.5 31 318-348 1-34 (43)
458 PF08728 CRT10: CRT10; InterP 91.9 8.7 0.00019 41.4 16.4 145 284-430 49-245 (717)
459 PF10313 DUF2415: Uncharacteri 91.7 0.66 1.4E-05 29.5 5.0 31 273-303 1-34 (43)
460 COG5167 VID27 Protein involved 91.7 4.3 9.2E-05 41.0 12.9 140 328-471 478-632 (776)
461 PRK14131 N-acetylneuraminic ac 91.5 17 0.00036 36.7 20.8 53 370-422 84-149 (376)
462 PF07250 Glyoxal_oxid_N: Glyox 91.1 4 8.7E-05 37.9 11.7 143 383-527 48-207 (243)
463 PF08801 Nucleoporin_N: Nup133 90.8 9.8 0.00021 39.1 15.7 32 442-473 190-221 (422)
464 PF07569 Hira: TUP1-like enhan 90.7 1.5 3.2E-05 40.3 8.5 65 496-562 19-97 (219)
465 PF09398 FOP_dimer: FOP N term 90.3 0.41 8.8E-06 35.5 3.6 31 65-95 20-50 (81)
466 PRK14131 N-acetylneuraminic ac 90.1 22 0.00049 35.8 23.4 96 283-380 38-149 (376)
467 PF07569 Hira: TUP1-like enhan 90.1 2.5 5.5E-05 38.7 9.5 64 408-472 17-96 (219)
468 KOG1916 Nuclear protein, conta 90.0 0.19 4.1E-06 53.6 2.3 71 488-560 184-265 (1283)
469 PF02333 Phytase: Phytase; In 90.0 22 0.00048 35.4 21.6 187 368-562 65-292 (381)
470 KOG1898 Splicing factor 3b, su 89.8 38 0.00082 37.9 27.4 101 286-386 551-668 (1205)
471 PRK13684 Ycf48-like protein; P 89.8 22 0.00048 35.1 22.8 150 359-515 172-329 (334)
472 KOG1983 Tomosyn and related SN 89.7 10 0.00022 43.3 15.6 29 274-302 37-65 (993)
473 COG5290 IkappaB kinase complex 89.0 16 0.00036 39.2 15.0 68 404-472 249-325 (1243)
474 COG1506 DAP2 Dipeptidyl aminop 89.0 38 0.00083 36.8 28.1 282 268-565 55-389 (620)
475 KOG1898 Splicing factor 3b, su 88.8 45 0.00097 37.3 19.1 172 340-516 854-1047(1205)
476 PF13449 Phytase-like: Esteras 88.8 26 0.00056 34.5 21.4 102 360-461 20-166 (326)
477 KOG1983 Tomosyn and related SN 88.7 15 0.00033 41.9 16.0 111 317-433 35-146 (993)
478 KOG4460 Nuclear pore complex, 88.7 8.2 0.00018 39.2 12.2 27 319-345 105-131 (741)
479 TIGR03547 muta_rot_YjhT mutatr 88.7 27 0.00058 34.7 21.7 41 381-421 168-209 (346)
480 COG5290 IkappaB kinase complex 88.5 29 0.00063 37.4 16.4 31 358-388 111-141 (1243)
481 PF14781 BBS2_N: Ciliary BBSom 88.4 13 0.00028 30.7 12.1 105 366-472 5-126 (136)
482 PF08728 CRT10: CRT10; InterP 88.0 6.1 0.00013 42.5 11.6 113 275-388 103-245 (717)
483 PF10395 Utp8: Utp8 family; I 87.8 43 0.00092 36.0 24.1 159 401-567 129-312 (670)
484 PF11715 Nup160: Nucleoporin N 87.8 2.8 6.2E-05 44.7 9.5 76 282-357 156-258 (547)
485 PF14761 HPS3_N: Hermansky-Pud 87.8 19 0.00041 32.5 12.8 102 285-389 29-163 (215)
486 PF13449 Phytase-like: Esteras 87.2 32 0.00069 33.9 18.0 108 271-379 18-166 (326)
487 KOG1900 Nuclear pore complex, 86.9 9.4 0.0002 43.4 12.5 166 258-432 65-273 (1311)
488 KOG4659 Uncharacterized conser 86.3 70 0.0015 36.9 19.2 36 267-302 342-384 (1899)
489 PF10214 Rrn6: RNA polymerase 85.5 53 0.0012 36.7 18.0 192 238-430 111-328 (765)
490 PF12768 Rax2: Cortical protei 85.5 17 0.00038 34.6 12.2 93 339-431 16-123 (281)
491 PF14781 BBS2_N: Ciliary BBSom 85.3 20 0.00043 29.6 13.5 110 408-521 5-129 (136)
492 COG4590 ABC-type uncharacteriz 85.2 5.5 0.00012 39.6 8.8 166 265-434 213-389 (733)
493 PF12768 Rax2: Cortical protei 84.8 34 0.00075 32.7 13.9 91 380-470 15-122 (281)
494 KOG1900 Nuclear pore complex, 84.5 10 0.00022 43.1 11.4 137 336-473 96-274 (1311)
495 COG4590 ABC-type uncharacteriz 84.5 31 0.00068 34.6 13.4 158 401-565 220-391 (733)
496 KOG4460 Nuclear pore complex, 84.3 26 0.00057 35.9 13.0 25 361-385 105-129 (741)
497 PF07995 GSDH: Glucose / Sorbo 84.2 35 0.00076 33.6 14.4 106 403-509 3-135 (331)
498 KOG2063 Vacuolar assembly/sort 83.7 80 0.0017 35.3 18.2 71 280-351 22-100 (877)
499 PF07676 PD40: WD40-like Beta 83.1 6.1 0.00013 24.4 5.7 33 525-557 4-38 (39)
500 PLN00033 photosystem II stabil 82.9 57 0.0012 33.1 30.8 146 405-557 242-396 (398)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-89 Score=624.81 Aligned_cols=512 Identities=50% Similarity=0.870 Sum_probs=481.0
Q ss_pred CCCccccccCcCCccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHHHHHHHHHcCChHHHHHHhhcCCCCChh
Q 008005 48 SQGDEEKIGSKGVIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDET 127 (581)
Q Consensus 48 ~~~~~~~~~~~~~~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~ 127 (581)
+.|.-+.+|+||.|.+.|++||++|+|+.+||.+|+.+||.|+|+.+++...+.|.+++++|+|+.++..+..++++++.
T Consensus 2 ~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~ 81 (519)
T KOG0293|consen 2 QNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDER 81 (519)
T ss_pred CCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchh
Confidence 45666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcccccccChhhHHHhhhccccCCcccccCCCCCCccchHHHHHHHHHH
Q 008005 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKL 207 (581)
Q Consensus 128 ~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 207 (581)
..+.+.|++.||+|||++..+....|+..||++..++.++.+++++|+..+..++.....+. .........|.++++++
T Consensus 82 ~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~el 160 (519)
T KOG0293|consen 82 NRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDEL 160 (519)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987766533222111 11344567899999999
Q ss_pred HhcCCCCCCCCcchHHHHHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEE
Q 008005 208 QKLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL 287 (581)
Q Consensus 208 ~~~~~~~~~~p~~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~l 287 (581)
++++|+.+++|++||++|++||+.+|.+.|+||+..+ .++++.||.|.+..+|.+..+++..|+++||.+.||++|+||
T Consensus 161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsld-svsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyL 239 (519)
T KOG0293|consen 161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLD-SVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYL 239 (519)
T ss_pred HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccc-hhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeE
Confidence 9999999999999999999999999999999999887 599999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC-CCeEEEEE
Q 008005 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCG 366 (581)
Q Consensus 288 asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~ 366 (581)
||++.|.+..||.+.....++..+++.+|..+|..+.||||+++|++|+.|..+++||+.+|.+...+... ...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 99999999999999888888999999999999999999999999999999999999999999998887644 67899999
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceE
Q 008005 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVIT 445 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~ 445 (581)
|.|||..+++|+.|++|..||+++.....|.......|.++++++||+++++.+.|..|++|+..+.. ........+|+
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred EccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 99999999999999999999999999999998888889999999999999999999999999999888 44788889999
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
++++|.+++++++.-.+..+++||+... ..+..+.||....+.|++||...+..++++||+|+.|+||+..+|+++..+
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 9999999999999999999999999966 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 526 AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.||...|++++|+|..+.++||||+||+||||.....
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999998755
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-66 Score=459.18 Aligned_cols=482 Identities=21% Similarity=0.334 Sum_probs=409.0
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCC-HHHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 008005 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHS-SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQ 139 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~-~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~q 139 (581)
|.+.+|+|||.|||+|+.+.+++++||+|+++++|+ ..++.|.+.|.+|+||.++..++++++|++.+.. +|||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~d-----LYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLID-----LYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHH-----HHHH
Confidence 456699999999999999999999999999999998 7899999999999999999999999999977766 9999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcc---cccccChhhHHHhhhccccCCcccccCCCCCCcc-chHHHHHHHHHHHhcCCCCC
Q 008005 140 KFLELLRRDKVSAALNSLRSEI---VPLQINMSRVHELASCIISPSKSLTLGDSGQDTE-DEKSRSKFLAKLQKLLPASV 215 (581)
Q Consensus 140 ~~lell~~~~~~~a~~~l~~~l---~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~r~~l~~~l~~~~~~~~ 215 (581)
..+||+|.++...|+.+||+.- ...+.+++|+.+|+.++..+..+ ....+.+. .++.|..+.+.+.. ..-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFD---p~EaY~dssKEkrRa~IAQ~ls~---EV~ 153 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFD---PREAYGDSSKEKRRAVIAQALSG---EVH 153 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccC---hhhhcCcchHHHHHHHHHHHhcC---ceE
Confidence 9999999999999999999752 22245889999999998876433 22223333 34455555555554 335
Q ss_pred CCCcchHHHHHHHHHHHccccceeccCCCCCceeeccCCC----Ccccccccceeecc-cccCcEEEEEEcCCCCEEEEE
Q 008005 216 VIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQC----GRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASS 290 (581)
Q Consensus 216 ~~p~~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g~~lasg 290 (581)
++||+||..|+.|+++||.+..++++.. .+.+|..... ....+|.+..+.++ +.+..+-|..|||||+||++|
T Consensus 154 VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsg 231 (508)
T KOG0275|consen 154 VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSG 231 (508)
T ss_pred EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeec
Confidence 8899999999999999999999986543 5677765433 23456777766665 677889999999999999999
Q ss_pred eCCCeEEEEEcccCC-----eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe-cCCCeEEE
Q 008005 291 SKDQSAIIWEVKEDG-----QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLIS 364 (581)
Q Consensus 291 s~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~ 364 (581)
+.||.|.+||..++. ++.....+..+..+|.|+.|+.|...+++|+.||.|+||.+++|.|++.|. .|...|+|
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~ 311 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTC 311 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeE
Confidence 999999999987653 123334566789999999999999999999999999999999999999997 88999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeEEec
Q 008005 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEE 440 (581)
Q Consensus 365 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 440 (581)
+.|+.|+..+++++.|.++++.-+.+++.......|...|+...|++||..+++++.||+|++|+.++.. .+....
T Consensus 312 l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 312 LSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 9999999999999999999999999988887778888899999999999999999999999999999876 223345
Q ss_pred CCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 441 EEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 441 ~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
.-+|.++..-| +...++++...+++++.++.. +.++.+.......-..-.+..+|.|.++++.++|+.++.|.+.+|
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 66788887777 556899999999999999987 678887755443333334555999999999999999999999999
Q ss_pred ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 520 ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 520 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++..++..|+..|.+++.+|.. +++++-+.||.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCccc-chhhhhcccchhhhcC
Confidence 9999999999999999999998 7999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-51 Score=372.77 Aligned_cols=326 Identities=21% Similarity=0.355 Sum_probs=293.1
Q ss_pred ceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC
Q 008005 247 FSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326 (581)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s 326 (581)
..+|......+.+.-.+|...+.||.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+
T Consensus 90 ~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 90 TLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred eEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEEC
Confidence 3456666667777778899999999999999999999999999999999999999876 5678899999999999999
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCcEE-EEEecCCCeEEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCeEEeeccCc
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLISCGWFL-----DGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 400 (581)
|||+.||+|+.||+|++||..+|+++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+........|
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 99999999999999999999998765 57889999999999986 5678999999999999999999998889999
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEEC-----------CCCC-------------
Q 008005 401 TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS-----------KDNK------------- 454 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s-----------p~~~------------- 454 (581)
..+|+|+.|-.+| ++++++.|++|++|+...+. ..+..|...|+.++.+ |.++
T Consensus 247 T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 247 TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 9999999998766 89999999999999999877 6677888889888876 2233
Q ss_pred ------------EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 455 ------------YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 455 ------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
.|++|+.|.++.+|+-....+++.++.+|...+. ...++|++++||+++.|..|++||..+|+.+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn---~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN---HVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee---eEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 4999999999999998887789999999998743 3444999999999999999999999999999
Q ss_pred EEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecCCC
Q 008005 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 523 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
.+|++|-+.|+.++|+.|. ++|++||.|.++++|++++.++... +....+-|+|||+
T Consensus 403 asfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 9999999999999999999 7999999999999999999987754 4478899999996
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-46 Score=350.58 Aligned_cols=318 Identities=22% Similarity=0.354 Sum_probs=270.9
Q ss_pred ccccccceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCe-ee----EEEE------ecCCCCCEEEEEe
Q 008005 258 NRIPSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQ-VS----LKHR------LSGHRKPVFTVSW 325 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~-~~----~~~~------~~~h~~~V~~l~~ 325 (581)
..+|......+. |+.+|.+++|+|-.. .+++|+.|-+.++|++..... .. +.+. -......|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 346777788888 999999999999766 899999999999999874110 00 0011 1112357999999
Q ss_pred CCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEE
Q 008005 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 326 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 405 (581)
+.+|..||+|+.||.+++|+. +|..+.++..|.++|.++.|+..|++|++++.|+++.+||..++........+..+-.
T Consensus 244 n~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 999999999999999999995 5788899999999999999999999999999999999999999999888888876667
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
++.|-.+ ..+++.+.|+.|+++.+.... ..+..|.+.|.++.|+|.+.+|++++.|++++||.+... .....+.+|
T Consensus 323 DVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~H 400 (524)
T KOG0273|consen 323 DVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAH 400 (524)
T ss_pred ceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhh
Confidence 8888755 478899999999999887655 788889999999999999999999999999999998776 778888999
Q ss_pred ccceeEEEeeecCC------CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 484 KRARFVIRSCFGGF------EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 484 ~~~~~~i~~~~~~~------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
...++.+.+....| .+..+++++.|++|++||+..+.++..|..|..+|.+++|+|+| .++|+|+.||.|.||
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIW 479 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEec
Confidence 98866665533211 45679999999999999999999999999999999999999999 799999999999999
Q ss_pred cCCccccccccCCCc----eEEecCCC
Q 008005 558 GLDQINMKHRDQSNG----IVHHCNGR 580 (581)
Q Consensus 558 ~~~~~~~~~~~~~~~----~~~~~~G~ 580 (581)
+..++++.+....++ +.|+++|.
T Consensus 480 s~~~~~l~~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 480 STKTGKLVKSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred cccchheeEeecCCCeEEEEEEcCCCC
Confidence 999999988777544 45666663
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-47 Score=343.70 Aligned_cols=306 Identities=25% Similarity=0.495 Sum_probs=275.1
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
+...+.|..+.+|+-. ...++.+.++|...|.|++|+|||+.||+|+.||+|++||..++++ .-..+.+|.
T Consensus 130 l~tGsGD~TvR~WD~~-------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH~ 200 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLD-------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGHK 200 (480)
T ss_pred EEecCCCceEEeeccC-------CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--ccccccCcc
Confidence 4456677777787543 3346889999999999999999999999999999999999988763 457899999
Q ss_pred CCEEEEEeCC-----CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008005 318 KPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 318 ~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 392 (581)
..|++++|.| ..++||+++.||.|+|||+..++++..+.+|..+|+|+.|--+ .++++|+.|++|++|+...+.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchh
Confidence 9999999987 5679999999999999999999999999999999999999754 489999999999999998888
Q ss_pred EEeeccCccccEEEEEEee-----------CC-------------------------CEEEEEEcCCeEEEEECCCCe--
Q 008005 393 LESWKGQKTLRISDMAITD-----------DG-------------------------KRIISICREAAILLLDREANF-- 434 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~-----------~~-------------------------~~l~~~~~dg~i~i~d~~~~~-- 434 (581)
+......|...|+.++.+. .+ ..+++|+.|.++.+|+.....
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 8888888888999998872 22 359999999999999986654
Q ss_pred -eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEE
Q 008005 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 435 -~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
.+...|...|+.+.||||++++++++.|..|++||.+++ +.+..|.+|-..++.+.+ +.|.++|++|+.|.++++
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvaw---saDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAW---SADSRLLVSGSKDSTLKV 435 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEe---ccCccEEEEcCCCceEEE
Confidence 677899999999999999999999999999999999999 899999999998777654 779999999999999999
Q ss_pred EeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 514 WHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 514 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|++++.++...+.+|...|.++.|+||| ..+++|+.|..+++|.
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEeec
Confidence 9999999999999999999999999999 7999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-45 Score=334.37 Aligned_cols=281 Identities=21% Similarity=0.278 Sum_probs=263.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC--CCeEEEeeCCCcEEEEEcC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~ 347 (581)
|-+.+|..+.||+|++.|||||-+|.++||+..+. ....++.+|...|.++.|+|. +..+|||+.||++++|+++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56788999999999999999999999999999765 677899999999999999996 5689999999999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+...+..+.+|...|..++|+|+|++|.|++.|.+-++||++++........|...|.+++|.+||..+++|+.|..-++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999999998888888888889999999999999999999999999
Q ss_pred EECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC-CCcEEEE
Q 008005 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIAS 504 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s 504 (581)
||++++. ..+.+|..+|.+++|+|+|..|++|+.|++++|||++.. ..+.++.+|...+..++. +| .|.+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~---~p~~g~fL~T 405 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKY---SPQEGYFLVT 405 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEe---cccCCeEEEE
Confidence 9999998 455689999999999999999999999999999999998 668889999987655443 54 8999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++.|++++||...++.++..+.||++.|.+++.+|++ ..++|++.|.++++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999 7999999999999996
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-42 Score=302.68 Aligned_cols=292 Identities=21% Similarity=0.336 Sum_probs=265.6
Q ss_pred ccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
+..+..++|+||.+.|.++.|++|++.|+++|.||.+.|||..+.++ .+.+.-....|..++|+|.|+++|+|+.|+
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK---~haipl~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK---VHAIPLPSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc---eeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence 34455689999999999999999999999999999999999987643 355666788999999999999999999999
Q ss_pred cEEEEEcCCC------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-C
Q 008005 340 AIRRWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-D 412 (581)
Q Consensus 340 ~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~ 412 (581)
...||++.+. ...+.+.+|.+.+.|+.|.+ ..+|+|++.|.+..+||+++++.......|.+.|.++.++| +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999999865 35567889999999999986 66899999999999999999999999999999999999999 9
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008005 413 GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
++.+++|+.|+..++||++.+. ..+..|+..|+++.|.|+|.-+++|+.|++.++||++.. +.+..|. +......+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys-~~~~~~gi 276 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYS-HDSIICGI 276 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeec-cCcccCCc
Confidence 9999999999999999999987 778899999999999999999999999999999999997 6666666 45555667
Q ss_pred EeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
..+.++..|++|++|..|..+.+||.-.++.+..+.+|++.|.++..+||| ..++|||.|.++|||.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 777779999999999999999999999999999999999999999999999 6999999999999994
No 8
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.7e-42 Score=322.27 Aligned_cols=299 Identities=22% Similarity=0.383 Sum_probs=273.2
Q ss_pred CcccccccceeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE
Q 008005 256 GRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (581)
Q Consensus 256 ~~~~~~~~~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s 334 (581)
....+|.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++...+ .+++++.+|..+|..++|+++|..+++
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeee
Confidence 455679999999999999999999999 89999999999999999998633 688999999999999999999999999
Q ss_pred eeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC
Q 008005 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
++.|+.|++||+++|+++..+... ..++|+.|.|++ +.+++|+.|+.|+.||++++++......|-+.|..+.|-++|
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred eecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence 999999999999999999988654 478899999988 889999999999999999999998888998999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC--ceeEEEecccccee
Q 008005 414 KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--KLVSRYKGHKRARF 488 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 488 (581)
+++++.+.|+++++|+.+... ...........++..+|+++++++-+.|+.|.+|.+.... ...+.|.+|....+
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 999999999999999998877 2233445567889999999999999999999999975432 34567899999999
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+.+-| +|+|.+|++|+.||.+++||.++.+.+..+++|++++..+.|+|..+..+||||.||.|++|+
T Consensus 435 s~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 998888 999999999999999999999999999999999999999999999989999999999999996
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-39 Score=280.98 Aligned_cols=291 Identities=20% Similarity=0.317 Sum_probs=249.9
Q ss_pred ceeecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccCCe--eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...++++|++.|+.++..+. ...+++++.|.++.+|++..... -...+.+.||...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 35688999999999999986 55899999999999999875422 1357889999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-cccEEEEEEeeC--CCEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDD--GKRII 417 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~i~~~~~--~~~l~ 417 (581)
+++||+.+++..+.|.+|...|.+++|++|++.+++|+.|.+|++|++-+.......... ...|+|+.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999887777666554 679999999998 67999
Q ss_pred EEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
+++.|++|++||+++.+ ..+..|.+.++.+++||||...++|+.||.+.+||++.+ +.+..+... . .+.++.+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~-~---~v~sl~f 241 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAF-D---IVNSLCF 241 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccCC-C---eEeeEEe
Confidence 99999999999999987 677889999999999999999999999999999999987 444444332 2 2555666
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEecc----C-----CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAG----H-----SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----h-----~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+|+.-.|+.+. +..|+|||+.++.++..+.. . .-...+++|+++| ..|+++-.|+.|++|.+..
T Consensus 242 spnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 242 SPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEeec
Confidence 88876666554 44599999999988776642 1 2345678999999 7999999999999998753
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=283.93 Aligned_cols=291 Identities=25% Similarity=0.446 Sum_probs=254.6
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++... .+-...+++|.++|..+.|.+|++.+++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 356678899999999999999999999999999999997633 244567789999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
.||+++|++++.++.|..-|..+.-..-| ..+.+|+.|+++++||++.+.......... +++++.|..++..+++|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccc
Confidence 99999999999999999999988844333 356678899999999999877666554443 8999999999999999999
Q ss_pred CCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC---CceeEEEeccccc--eeEEEeee
Q 008005 422 EAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKRA--RFVIRSCF 494 (581)
Q Consensus 422 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~--~~~i~~~~ 494 (581)
|+.|++||++... ....+|...|+.+..+|+|.++++.+.|.++++||++.. ...+..+.+|... ...+ .|.
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL-~cs 273 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL-KCS 273 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc-eee
Confidence 9999999998877 667789999999999999999999999999999999753 2457777776542 2334 455
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|+|++.++.+|+.|..+++||..+...+..+.||.+.|++++|+|.. .+|.+++.|.+|.+=.
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE 336 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence 69999999999999999999999989999999999999999999999 5999999999998743
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.3e-38 Score=268.75 Aligned_cols=276 Identities=21% Similarity=0.341 Sum_probs=241.2
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc--EEEEEecCCCeE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGL 362 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v 362 (581)
-+||++|.|.+|++|...++ .+..++....+.|+.+...|+++.||+++. ..|++||++++. ++.+|.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 38999999999999999988 677888878889999999999999999886 489999999875 588999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEe
Q 008005 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~ 439 (581)
+.+.|..+|+.+++|+.||+++|||++........... .+|+++..+|+...|+++..+|.|++||+.... ....+
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999986655555544 699999999999999999999999999999875 33334
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-----CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
....|.++...|||.+++++...|..++|++-+. ..++.++..|.+. .+++ .++|++++|+++|.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--il~C-~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH--ILRC-LLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce--EEEE-EECCCCcEEEeecCCceEEEE
Confidence 5678999999999999999999999999998653 2456667777765 3444 449999999999999999999
Q ss_pred eCCCC-ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 515 HRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 515 d~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+.++. +....+.+|...+.+.+||.++ .+|+||+.|+.+++|++..++......
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCceeeecC
Confidence 99887 6677889999999999999999 799999999999999999988655433
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-37 Score=268.23 Aligned_cols=287 Identities=24% Similarity=0.408 Sum_probs=242.5
Q ss_pred ceeecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccCCeeeEEEEe-cCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
.++.+++|.+.|+.++|+|- |..||||+.|+.|+||+...+..+.+...+ .+|+..|+.++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46788999999999999998 889999999999999999865566666555 4799999999999999999999999999
Q ss_pred EEEEcCCC--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC---CeEEeeccCccccEEEEEEeeCCCEE
Q 008005 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 342 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.||.-..+ +++.++.+|...|-+++|+++|++|++++.|+.|-+|.+.. -++......|...|..+.|+|....|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986644 68899999999999999999999999999999999999963 34566777888899999999999999
Q ss_pred EEEEcCCeEEEEECC-CCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 417 ISICREAAILLLDRE-ANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~-~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++++.|++|++|+-. ... ..+..+...|.+++|++.|..|++++.|++++||...+. .-..|....+.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP 240 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeee
Confidence 999999999999877 332 555677789999999999999999999999999986542 1123445555554
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCC------ceE-EEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTG------ELV-LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~------~~~-~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++ ...|++++.|+.|++|..... +.+ ..-..|...|++++|+|..+.+|++||+||.|++|.+.
T Consensus 241 W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD-----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec-----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 43 457999999999999986542 111 23346899999999999756799999999999999875
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=298.05 Aligned_cols=246 Identities=20% Similarity=0.282 Sum_probs=230.0
Q ss_pred cceeecccccCcEEEEEEcCC--CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 263 QTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~--g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+.+++|.||++.|.++.|+|. +.-+|||+.||++++|++.+. .++..+.+|...|..++|+|+|++|+|++.|.+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccc
Confidence 468899999999999999997 568999999999999999865 567889999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
-++||++++..+....+|..+|.+++|.+||..+++|+.|..-+|||++++....+...|..+|.+++|+|+|..+++|+
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred cCCeEEEEECCCCe--eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 421 REAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
.|++++|||++... .....|.+-|+.+.|+| .|.+|++++.|+++++|..++. .+++.+.||.+.+.. +..++
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~s---~Dis~ 440 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVIS---LDISP 440 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCCccceEE---EEecc
Confidence 99999999999877 56678999999999999 7889999999999999999998 899999999998544 44489
Q ss_pred CCcEEEEEeCCCcEEEEe
Q 008005 498 EQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd 515 (581)
++.++++++.|.++++|.
T Consensus 441 d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCceEEEeccCceeeecc
Confidence 999999999999999995
No 14
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-37 Score=265.29 Aligned_cols=292 Identities=23% Similarity=0.391 Sum_probs=261.8
Q ss_pred cccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
..|.+.+.++.+|.++|..+.|+-||+|.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 3566778899999999999999999999999999999999999876 6889999999999999999999999999999
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC--eEEeeccCccccEEEEEEeeCCCEE
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--ELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
..+.+||+++|+..+.+.+|...|..+.|+.+...+++|+.|.++++||.++. ++.+........|.++.++ +..+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEE
Confidence 99999999999999999999999999999999999999999999999999764 3444445555578887775 5689
Q ss_pred EEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecC
Q 008005 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
++|+.||+++.||++.+....-....+|++++|++|++..++++.|+++++.|-.++ +++..+++|....+.+.+++ .
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l-~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL-N 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee-c
Confidence 999999999999999998777778889999999999999999999999999999998 99999999999999999988 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC-EEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS-VNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.....+++|++||.|++||+.....+..+..|... |.+++++|.-. -++++. ++.+..|.-
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITAT-GHGDLFWYQ 298 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEec-CCceeceee
Confidence 67789999999999999999999999999988887 89999999885 455554 345666643
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=298.26 Aligned_cols=348 Identities=19% Similarity=0.364 Sum_probs=283.6
Q ss_pred HHHHHccccceeccCCCCCceeeccCCCCc-ccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe
Q 008005 228 KALDVQRDSCLFHNTSDSDFSLYSDHQCGR-NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (581)
Q Consensus 228 q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~ 306 (581)
.++++.+....|.......+.+|......+ ...|+...+++.+|-+.|+++.|+.|.++|++|+.|.+++||.++....
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 356667777777777777778887665544 4457778889999999999999999999999999999999999986544
Q ss_pred eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-----------------------CcE------------
Q 008005 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-----------------------GEC------------ 351 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-----------------------~~~------------ 351 (581)
-....+.+|.++|.++-|..+...+++.+.||.+.+|.... ++.
T Consensus 180 -~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 180 -LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred -cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 34567899999999999999999999999999999997650 110
Q ss_pred -----------------------------------------EEEEecCCCeEEEEEEecCCCeEEEEeCC-CcEEEEeCC
Q 008005 352 -----------------------------------------LHVYEKTGVGLISCGWFLDGGGIFAGMTD-KSICLWDLD 389 (581)
Q Consensus 352 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~ 389 (581)
++.+.....+|..++|+..|.+++.|+.. |.+.+|+..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 00011112344555555556666665543 677777776
Q ss_pred CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 390 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
..........|...+++++++|||+++++|+.||.|++||...+. ..+..|...|+.+.|+..++.+++.+-||+|+.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 666665666777899999999999999999999999999999987 778899999999999999999999999999999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
||+... ...++|....... ..+....|.|.++++|+.|. .|++|++++|+++..+.||+++|.+++|+|++ ..|+
T Consensus 419 wDlkRY-rNfRTft~P~p~Q--fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~La 494 (893)
T KOG0291|consen 419 WDLKRY-RNFRTFTSPEPIQ--FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLA 494 (893)
T ss_pred eeeccc-ceeeeecCCCcee--eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEE
Confidence 999887 7778887766543 33555578899999999988 89999999999999999999999999999999 7999
Q ss_pred EEECCCcEEEecCCccc-----cccccCCCceEEecCCC
Q 008005 547 SASDDRTIRIWGLDQIN-----MKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~-----~~~~~~~~~~~~~~~G~ 580 (581)
|+|+|.+||+|++-... +......-++.++|||+
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 99999999999996542 23344478889999986
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.6e-36 Score=298.66 Aligned_cols=280 Identities=20% Similarity=0.343 Sum_probs=243.1
Q ss_pred ccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC----------------------------eeeE
Q 008005 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----------------------------QVSL 309 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~----------------------------~~~~ 309 (581)
...|+-+..++..-...++|..|++|+.+||.|-.|..|++|.+.... .-..
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 334555666666666789999999999999999999999999986310 0123
Q ss_pred EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008005 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 389 (581)
..++.+|.++|..+.|+|+.++|++|+.|+++|+|.+.+..++..+++|..+|+++.|+|-|-+|++++.|++.++|..+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 390 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
..........|...|.|+.|+|+..++++|+.|.+|++||..++. ..+.+|.++|++++|||+|++|++|+.|+.|.+
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 888888888888899999999999999999999999999999988 677799999999999999999999999999999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc------------------------eEE
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE------------------------LVL 523 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~------------------------~~~ 523 (581)
||+.++ .++..+.+|.+.++.++. +.+|..||+|+.|++|++||+..-. ++.
T Consensus 604 WDl~~~-~~v~~l~~Ht~ti~SlsF---S~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llg 679 (707)
T KOG0263|consen 604 WDLANG-SLVKQLKGHTGTIYSLSF---SRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLG 679 (707)
T ss_pred EEcCCC-cchhhhhcccCceeEEEE---ecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceee
Confidence 999998 899999999877655544 8899999999999999999975321 233
Q ss_pred EeccCCCCEEEEEEcCCC
Q 008005 524 ALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 524 ~~~~h~~~v~~l~~~p~~ 541 (581)
.+.....+|.++.|.-.+
T Consensus 680 s~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 680 SFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred eeeecCceEEEEEEeccc
Confidence 444455567777776654
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.5e-38 Score=288.09 Aligned_cols=284 Identities=18% Similarity=0.345 Sum_probs=248.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
-+..|..+.|.|+|+.|++|+..|.+.+|+... +.....+..|..+|+++.|++++.++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 456899999999999999999999999999742 34445678999999999999999999999999999999976443
Q ss_pred EEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 351 CLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
++.+..| ...|.+++|+|+...|++++.||+|+|||....+.......|.-.|.+++|+|....+++++.|..|++||
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4445544 58999999999999999999999999999987766666677888999999999999999999999999999
Q ss_pred CCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC
Q 008005 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
.+++. .....|...|..+.|+|++++|++++.|..+++||+++. +.+..+.+|...+..+.+. +-...++.+|+.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~Wh--P~~~~lftsgg~ 327 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWH--PLNESLFTSGGS 327 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccc--cccccceeeccC
Confidence 99998 566789999999999999999999999999999999966 7788899999886554443 335678999999
Q ss_pred CCcEEEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 508 DSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
||.|..|.+...+++..+ .+|...|++++|+|-| ++|++|+.|.++++|.-...
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCCC
Confidence 999999999866665554 4799999999999999 89999999999999986543
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.5e-36 Score=282.77 Aligned_cols=309 Identities=21% Similarity=0.380 Sum_probs=257.1
Q ss_pred ccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCC
Q 008005 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (581)
..+.|..+.+| ...|++...++..|..-|.|+.|+|||.++||++.||+|.+||-.++..+..+..-.+|.+.
T Consensus 165 T~sdDn~v~ff-------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 165 TGSDDNTVAFF-------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred eccCCCeEEEe-------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc
Confidence 44455555555 34578888899999999999999999999999999999999999988665554445599999
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE-------------------------------------------Ee
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-------------------------------------------YE 356 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~ 356 (581)
|.+++|+||++.++|++.|.+++|||+.+.+++++ +.
T Consensus 238 IfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 99999999999999999999999999987654443 34
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec------------c--------------------------
Q 008005 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK------------G-------------------------- 398 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------~-------------------------- 398 (581)
+|...|+++..++++.+|++|+.||.|.-|+...+....+. .
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccc
Confidence 68889999999999999999999999999998532211100 0
Q ss_pred -------------------------------------------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008005 399 -------------------------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 399 -------------------------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
.-.....+++++|+++.+++|+.|+.|++|.+....
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 001234578899999999999999999999998755
Q ss_pred ---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcE
Q 008005 435 ---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 435 ---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
.....|...|+++++|||+.+|+++...+.+.+||+.+.......+.-|... +.+..|+|+..++|+|+-|-.|
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak---I~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK---INCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee---EEEEEeCCCceEEEeccccceE
Confidence 4677899999999999999999999999999999999975555566667766 6667779999999999999999
Q ss_pred EEEeCCCC-ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 512 YIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 512 ~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.||+++.. +.+....+|...|+.+.|-.+. .+++.|.|..|++|++.
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence 99998764 3455566798889999998765 79999999999999874
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-37 Score=276.85 Aligned_cols=299 Identities=16% Similarity=0.299 Sum_probs=265.5
Q ss_pred cccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee
Q 008005 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG 336 (581)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 336 (581)
.+-.|-+..+++++|.+.|.|+++.|...+|+||+.|++|+|||+.++ .+..++.||-..|..+++|+-..|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEec
Confidence 456677888999999999999999999999999999999999999987 67788999999999999999999999999
Q ss_pred CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE
Q 008005 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.|+.|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||++++........|..+|..+.+.|-...+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999888888888999999999988999
Q ss_pred EEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008005 417 ISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
++++.|++|++||++.+. .....|...+.+++.+|....+++++. ..|+-|++..+ ..+..+.+|...+..+.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g-~f~~nlsgh~~iintl~--- 367 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEG-EFLQNLSGHNAIINTLS--- 367 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCcc-chhhccccccceeeeee---
Confidence 999999999999999988 667788999999999999988888874 46899999888 66666888887644433
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--------CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--------HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.....++++|+++|.+.+||.++|...+.... .+..|.+.+|...| ..|+||..|.+|++|.-++.-..
T Consensus 368 -~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keDe~aT~ 444 (460)
T KOG0285|consen 368 -VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKEDEHATE 444 (460)
T ss_pred -eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC-ceEEeccCCcceEEEecccccCc
Confidence 33456889999999999999999866554421 24578999999999 79999999999999987765443
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-36 Score=308.12 Aligned_cols=293 Identities=30% Similarity=0.491 Sum_probs=262.1
Q ss_pred eeecccc-cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 265 LQILEAH-SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h-~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
.+.+.+| ...|.|+.|+++|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5556555 78999999999999999999999999999965432 255667899999999999999999999999999999
Q ss_pred EEc-CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 344 WDV-NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++|++||++++++......|...|++++|+++++.+++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568999999999999999999999999999999999999999999888888888899999999999999999999
Q ss_pred CeEEEEECCCCee----eEEecCC--ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecC
Q 008005 423 AAILLLDREANFE----RWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 423 g~i~i~d~~~~~~----~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
+.|++||+.++.. ....+.. .++++.|+|++.++++++.|+.+++||+... .....+.+|......+......
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccccc
Confidence 9999999999882 2223333 5899999999999999999999999999987 7888888888864455445557
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-CCCEEEEEEcCCCCcEEEEEE--CCCcEEEecCC
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPANLHMLASAS--DDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s--~Dg~I~iW~~~ 560 (581)
+.+.++++|+.|+.|++||..++..+..+.+| ...+..++|+|.. .++++++ .|+.|++|..+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 89999999999999999999999999999999 8999999999998 6999998 78999999875
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-37 Score=276.69 Aligned_cols=290 Identities=18% Similarity=0.312 Sum_probs=266.9
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
+...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++ .+...+++|.+.|..++|+..|+++++++.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 3556788899999999999999999999999999999999876 4578899999999999999999999999999999
Q ss_pred EEEEcCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 342 RRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 342 ~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
++||..+ .++++...+|...|.++.|.|.|.++++++.|.+|+.|++.++........|...|..+..+.||..+++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 677888889999999999999999999999999999999999988888888888999999999999999999
Q ss_pred cCCeEEEEECCCCe--eeEEecCCceEEEEECCC---------------CCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 421 REAAILLLDREANF--ERWIEEEEVITSFSLSKD---------------NKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
.|.+|++|-+.++. .....|+.+|.+++|-|. +.++.+++.|++|++||+.++ ..+.++.+|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~gh 333 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGH 333 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecc
Confidence 99999999999985 667788999999998763 258999999999999999998 899999999
Q ss_pred ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
... ++...++|.|+||+++.+|+++++||++++++...+..|..-|++++|+.+.+ +++||+-|.++++|.-
T Consensus 334 dnw---Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNW---VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cce---eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 987 44445599999999999999999999999999999999999999999999985 9999999999999974
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=255.53 Aligned_cols=288 Identities=18% Similarity=0.301 Sum_probs=247.2
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
+...+.|..+.+|..+ ...|..++....+.|+.+.+.||+++||+++. ..|++||+.+++. .++.++.+|.
T Consensus 13 LvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~ 83 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHT 83 (311)
T ss_pred EEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccC
Confidence 3455666677777644 45678888888889999999999999999874 5699999998655 3778999999
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-Eee
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESW 396 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~ 396 (581)
+.|+++.|..+|+.+++|+.||+++|||++...+.+.+. +..+|+++..+|+...|++|..+|.|++||+..... ...
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999999999977777664 458999999999999999999999999999987643 333
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.......|.++.+.|||..++++...|..++|++-+.. .++..|.+.+..+.+|||+++|++++.|.+++||
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 34444589999999999999999999999999987654 4566789999999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~ 538 (581)
+.++..+....+.+|...+ ..+. |+.++.||++|+.|+.+++|++..++.+..+.+|.....|++.+
T Consensus 243 n~~~~~kle~~l~gh~rWv--Wdc~-FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWV--WDCA-FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceeeEEEeecCCceE--Eeee-eccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998766677788887653 3344 48999999999999999999999999999999998888887754
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.6e-35 Score=283.43 Aligned_cols=286 Identities=30% Similarity=0.491 Sum_probs=251.4
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
++++.+|.++|++++|+|++++|++++.||.|++|++.++. ....+..|...+..+.|+|+++++++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 35677999999999999999999999999999999998653 456677899999999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
|+.+++....+..|...+.++.|++++..+++++.++.|.+||+.+.........+...+.+++++|++.++++++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 99998888888889889999999999888888888999999999876665555566668999999999988888888999
Q ss_pred EEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE
Q 008005 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|++||+++.. ..+..+...+.++.|+|+++.+++++.++.|++||+... ..+..+..+... +..+.+++++.++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~~ 234 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG---VNSVAFSPDGYLL 234 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc---eEEEEEcCCCcEE
Confidence 9999998665 445566778999999999999999999999999999876 666777666654 3344447788899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++++.||.|++||+.+++....+..|...|.+++|+|++ .+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 998889999999999999999999999999999999998 6999999999999996
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-35 Score=275.88 Aligned_cols=278 Identities=21% Similarity=0.365 Sum_probs=250.3
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+..|++++|+.+|.+||+|+.||.++||+... ....++..|.++|.++.|+.+|.||++++.|+++.+||..+|+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 36899999999999999999999999999874 35578889999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
...+..|..+...+.|-. ...|++.+.|+.|+++.+....+.....+|.++|.++.|+|.+..|++++.|+++++|+..
T Consensus 311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 999999988878899974 4588999999999999998766665555688899999999999999999999999999977
Q ss_pred CCe--eeEEecCCceEEEEECCCC---------CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 432 ANF--ERWIEEEEVITSFSLSKDN---------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 432 ~~~--~~~~~~~~~i~~~~~sp~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
... ..+..|...|..+.|+|+| ..+++++.|++|++||+..+ .++..|..|..+++.+.+ +|+|+
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvaf---S~~g~ 465 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAF---SPNGR 465 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEe---cCCCc
Confidence 655 6677889999999999964 56899999999999999998 889999999999776544 99999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+| ..|..+-.|+.+++-|++
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 999999999999999999999999986 4569999999999 788888899999998875
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=258.32 Aligned_cols=271 Identities=18% Similarity=0.288 Sum_probs=228.6
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
++..+.|..+-+|.-+.. +..-..+++.++||...|..++.++||++.++++.|+++++||+.++ +..+.|.+|.
T Consensus 31 l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH~ 105 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGHT 105 (315)
T ss_pred EEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEecC
Confidence 455666666666754433 33345678899999999999999999999999999999999999987 5668899999
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC--CCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCeE
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
..|.+++|++|...+++|+.|.+|++|++..+ +..++..+ ...|.|+.|+|+ ...|++++.|++|++||+++.++
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 99999999999999999999999999998644 44444433 789999999997 78899999999999999999999
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
......|.+.++.++++|||..+++|+.||.+.+||++.++ .....+...|.+++|+|+.-.|+.+. +..|+|||+.+
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~ 263 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES 263 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence 99888999999999999999999999999999999999988 77788999999999999887777665 56699999998
Q ss_pred CCceeEEEec----c---ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 473 DPKLVSRYKG----H---KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 473 ~~~~~~~~~~----~---~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
. ..+..+.. . .....++ .+.|+++|..|++|-.|+.|++|.+.
T Consensus 264 ~-~~v~~l~~d~~g~s~~~~~~~cl-slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 K-AVVEELKLDGIGPSSKAGDPICL-SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred h-hhhhhccccccccccccCCcEEE-EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6 44444331 1 1123334 45559999999999999999999864
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-35 Score=266.49 Aligned_cols=310 Identities=18% Similarity=0.238 Sum_probs=264.2
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
.+..|..|+++|.+++.+|+.+++|||+.|....||++.++. ....+.+|...|+++.|+.+|.+||||+.+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 467889999999999999999999999999999999998873 56788999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC
Q 008005 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 423 (581)
|...++.....+...-..+.-+.|+|-+..|++|+.||.+.+|.+..+........|..++++-.|.|+|++++++..||
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 99999999888876777888899999999999999999999999988666666677888999999999999999999999
Q ss_pred eEEEEECCCCeeeEE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe--------ccccceeEEEe
Q 008005 424 AILLLDREANFERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK--------GHKRARFVIRS 492 (581)
Q Consensus 424 ~i~i~d~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~i~~ 492 (581)
+|++|++.++..... ......+++.++..+..++.|..++.+++.+..++ +.+.... .+......+.+
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhhh
Confidence 999999999873222 23456778888889999999999999998888776 5554444 33334444555
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC---
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ--- 569 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~--- 569 (581)
..++..-.+.|+|+-||+|.|||+...++...+. |...|+.+.|-+ . .+|++++.||.|+.||.++++++....
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c-chheeeccCceEEeeeccccceEEEEecCc
Confidence 5556677789999999999999998877766654 888999999999 4 589999999999999999999986544
Q ss_pred --CCceEEecCCC
Q 008005 570 --SNGIVHHCNGR 580 (581)
Q Consensus 570 --~~~~~~~~~G~ 580 (581)
.-.++.+|+++
T Consensus 369 ~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 369 MGILDFALSPQKR 381 (399)
T ss_pred hheeEEEEcCCCc
Confidence 55666677665
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=279.69 Aligned_cols=325 Identities=15% Similarity=0.330 Sum_probs=267.6
Q ss_pred ceeccCCCCCceeeccCCCCccccc-ccceeecccccCcEEEEEEcCCCCEEEEEeCC-CeEEEEEcccCCeeeEEEEec
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD-QSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~d-g~i~iwd~~~~~~~~~~~~~~ 314 (581)
|-||....-.+.-++........+| ..+++.+.--..+|..++|+..|.+||.|+.. |.+-||++.+. ..+...+
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQQ 347 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQQ 347 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceeeecc
Confidence 4455544433344443333333344 45678888788899999999999999998755 89999999875 4556678
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeE
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-REL 393 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~ 393 (581)
+|...+++++++|||+++|||+.||.|+|||..+|-|..+|..|...|+.+.|+..++.+++.+-||+|+.||+.. ...
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999965 444
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCC-eEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
..+.........|++..|.|..+++|+.|. .|++|++.+++ ....+|+++|.+++|+|++..|++++.|.+|++||+
T Consensus 428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 555555555778999999999999998887 59999999998 567799999999999999999999999999999999
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--------------------CCC
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--------------------HSG 530 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------------h~~ 530 (581)
-.....+.++..... .+... +.|+|+-|++++-||.|.+||...+..+..+.+ ...
T Consensus 508 f~s~~~vEtl~i~sd---vl~vs-frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K 583 (893)
T KOG0291|consen 508 FSSSGTVETLEIRSD---VLAVS-FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK 583 (893)
T ss_pred eccCceeeeEeeccc---eeEEE-EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence 776455666554333 13333 499999999999999999999887655543332 235
Q ss_pred CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 531 SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 531 ~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+.+++++|| ..|++||....|+||++.++-+..+..
T Consensus 584 ~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 584 TFTTICYSADG-KCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred ceEEEEEcCCC-CEEEecCCcccEEEEECchhheeeeEE
Confidence 78999999999 799999999999999999988776544
No 28
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=252.19 Aligned_cols=348 Identities=21% Similarity=0.370 Sum_probs=270.0
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHccccceeccCCC---------CCcee-eccC-CCCcccccccceeecccccCcEEEE
Q 008005 210 LLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSD---------SDFSL-YSDH-QCGRNRIPSQTLQILEAHSDEVWFL 278 (581)
Q Consensus 210 ~~~~~~~~p~~rl~~l~~q~~~~q~~~~~~~~~~~---------~~~~l-~~~~-~~~~~~~~~~~~~~l~~h~~~V~~l 278 (581)
..|.....|++||..|+...+.............. ..+.+ |+.+ +......+.-....+..|+.++.+.
T Consensus 39 ~~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~a 118 (430)
T KOG0640|consen 39 MTPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAA 118 (430)
T ss_pred cCcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeee
Confidence 45667888999999999888877655444332221 12222 2212 2222223334456788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccc---------------CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 279 QFSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 279 ~~s~~g~~lasgs~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
+|||||.++|||+.|..|+|.|++. ...-..++++..|.+.|+++.|+|....|++++.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 9999999999999999999999861 1122567889999999999999999999999999999999
Q ss_pred EEcCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec---cCccccEEEEEEeeCCCEEEE
Q 008005 344 WDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 344 wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~ 418 (581)
+|+......+.++ ....+|.++.|+|.|.++++|....++++||+++.+..... ..|...|+++.+++.++..++
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence 9997654333332 33568999999999999999999999999999986654332 456678999999999999999
Q ss_pred EEcCCeEEEEECCCCe-eeE---EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc---cceeEEE
Q 008005 419 ICREAAILLLDREANF-ERW---IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK---RARFVIR 491 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~-~~~---~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~i~ 491 (581)
++.||.|++||--++. ... ......|.+..|..+++|+++.+.|..+++|.+.++ +.+..+.|.. .......
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhhhh
Confidence 9999999999987765 222 234567999999999999999999999999999998 8888887662 2233344
Q ss_pred eeecCCCCcEEEEEeC-CCcEEEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 492 SCFGGFEQAFIASGSE-DSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
..| .....|++.-.+ .+.+.-||.+++..+..+ -+|++.+..+..+|.++ .++|||+|..+++|--+
T Consensus 358 AvF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 358 AVF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 455 445556555443 568999999988766544 47999999999999995 89999999999999644
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=249.20 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=236.0
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC---CeeeEEEEe
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL 313 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~---~~~~~~~~~ 313 (581)
-++..+.|+.+-+|+.++ ....+.+.-....|..++|+|.|+++|+|+-|+...||++.+. +.....+.+
T Consensus 69 ~ivSaSqDGklIvWDs~T-------tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFT-------TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred eEEeeccCCeEEEEEccc-------ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 456777888888886554 3446677777889999999999999999999999999999743 234566789
Q ss_pred cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCe
Q 008005 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~ 392 (581)
.+|.+.+.|+.|-+ +..|+|++.|.+..+||+++|+.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.+.
T Consensus 142 ~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 99999999999987 56899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEe---cCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
..+.+..|...|+++.|.|+|.-+++|+.|++.++||++... ...+. ...+|++++||..|++|++|..|..+.+|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 888888899999999999999999999999999999999876 33333 34578999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
|.-.+ +.+..+.+|.+.+..+ -.+|+|.-+++|+.|..++||.
T Consensus 301 Dtlk~-e~vg~L~GHeNRvScl---~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 301 DTLKG-ERVGVLAGHENRVSCL---GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ecccc-ceEEEeeccCCeeEEE---EECCCCcEEEecchhHheeecC
Confidence 98877 7888999999985544 4489999999999999999994
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.6e-33 Score=306.21 Aligned_cols=285 Identities=18% Similarity=0.305 Sum_probs=234.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC----Cee-eEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcE
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----~~~-~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i 341 (581)
+.+|.+.|++++|+|+|++||+|+.|++|+||+.... ... .....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 100 1112233 356799999987 47899999999999
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEe-eCCCEEEEE
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-DDGKRIISI 419 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~ 419 (581)
++||+.+++.+..+..|...|++++|+| ++..|++|+.||.|++||++++........+ ..+.++.|+ +++..+++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999876654444433 478999995 579999999
Q ss_pred EcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-----CceeEEEeccccceeEEE
Q 008005 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~ 491 (581)
+.|+.|++||+++.. .....|...|.++.|. ++.+|++++.|+.|++||+... ..++..+.+|.....
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~--- 712 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN--- 712 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee---
Confidence 999999999998754 3456788899999997 7889999999999999999743 246777888876543
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-------------ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-------------AGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++.+++++.+|++|+.|+.|++|+.....++..+ ..|...|.+++|+|++ ..|++|+.||.|+||+
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIKILE 791 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEEEEe
Confidence 3444888999999999999999997765443222 2345679999999999 7999999999999998
Q ss_pred C
Q 008005 559 L 559 (581)
Q Consensus 559 ~ 559 (581)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-34 Score=280.69 Aligned_cols=297 Identities=20% Similarity=0.359 Sum_probs=246.7
Q ss_pred cceeeccc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC--eEEEeeCCC
Q 008005 263 QTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEE 339 (581)
Q Consensus 263 ~~~~~l~~-h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~dg 339 (581)
+.++.++. |+++|.-++|+|.|..|++|+.|+.++|||+..+ .+.+.++||.+.|.++.|+|+-. .|++|+.|+
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC---EEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 56777887 9999999999999999999999999999999866 68899999999999999999654 589999999
Q ss_pred cEEEEEcCCCc-EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE----------------e-------
Q 008005 340 AIRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE----------------S------- 395 (581)
Q Consensus 340 ~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----------------~------- 395 (581)
++++||+.+.. ++..+..|...|+++.+.+|+..+++++.|..+.+||+...+.. .
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE 251 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce
Confidence 99999998654 47788899999999999999999999999999999987321000 0
Q ss_pred ec---c--------------------------------------------------------------------------
Q 008005 396 WK---G-------------------------------------------------------------------------- 398 (581)
Q Consensus 396 ~~---~-------------------------------------------------------------------------- 398 (581)
+. .
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF 331 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee
Confidence 00 0
Q ss_pred -------------------------------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC--------------
Q 008005 399 -------------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREAN-------------- 433 (581)
Q Consensus 399 -------------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------------- 433 (581)
.|...|.++....+|.+|++++.|.++++|.++++
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~ 411 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT 411 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc
Confidence 33334555554455556666777766666644221
Q ss_pred ---------------------------------e-----------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 434 ---------------------------------F-----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 434 ---------------------------------~-----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
. .....|...|++++++|+.+.+++|+.|.+.++|+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 0 01124667899999999999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
+... .....+.+|...++.+.+ ++..+.++|+|.|++|+||.+.+..++.++.||...|..+.|-.++ ..|+||+
T Consensus 492 le~~-~l~~vLsGH~RGvw~V~F---s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-~qliS~~ 566 (775)
T KOG0319|consen 492 LEQL-RLLGVLSGHTRGVWCVSF---SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-KQLISAG 566 (775)
T ss_pred ccCc-eEEEEeeCCccceEEEEe---ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-cEEEecc
Confidence 9966 899999999999766554 7888999999999999999999999999999999999999999999 7999999
Q ss_pred CCCcEEEecCCccccccc
Q 008005 550 DDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 550 ~Dg~I~iW~~~~~~~~~~ 567 (581)
.||-|++|++++.++...
T Consensus 567 adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMT 584 (775)
T ss_pred CCCcEEEEeccchhhhhh
Confidence 999999999999988754
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-34 Score=286.84 Aligned_cols=249 Identities=19% Similarity=0.321 Sum_probs=225.2
Q ss_pred EecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-------------------------------cEEEEEecCCC
Q 008005 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-------------------------------ECLHVYEKTGV 360 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-------------------------------~~~~~~~~~~~ 360 (581)
++..-...++|..|++|+.+||.|..|..|++|.+... ...+++-+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34444567999999999999999999999999987631 12344678999
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEE
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI 438 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~ 438 (581)
+|..+.|+|+.++|++++.|++|++|.+++.........|..+|.++.|+|.|-++++++.|++-++|...... ..+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999999999999999988888888899999999999999999999999999999988766 6778
Q ss_pred ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.|...+.|+.|+|++.|+++|+.|.++++||+.++ ..++.|.||.+++. +..++|+|++|++|+.||.|.+||+.+
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~---al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVT---ALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceE---EEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999999999999999999999999999998 88999999999844 444499999999999999999999999
Q ss_pred CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++++..+.+|.+.|.++.|+.+| .+||+||.|.+|++||+......
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999 79999999999999999765443
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=249.65 Aligned_cols=289 Identities=24% Similarity=0.375 Sum_probs=253.2
Q ss_pred eecccccCcEEEEEEcC---CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 266 QILEAHSDEVWFLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~---~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++ ..+.++.+|.+.|+....+.+...-++++.|=+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 46679999999999986 8889999999999888777766 45689999999999999999888899999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe-EEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
|||.-+|..++.| .|...|..++|+.|.++|++|+.+..+++||++..+ .......|...|..+.|....+.+++++.
T Consensus 85 vw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 85 VWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 9999999998888 567789999999999999999999999999997533 33344556678999999999999999999
Q ss_pred CCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 422 dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
|++|++||.+++. ...+..+.+|+++.++++|++|.++. .+.|.+||..+- .+++.+..... +.+...+|+..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~n----V~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCN----VESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCccc----cccccccCCCc
Confidence 9999999999998 77788899999999999998876654 788999999886 66666654433 45555689999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++++|++|+.++.||..+|+.+..+ ++|.++|.|+.|+|+| .+.++||.||+|++|....++..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999886 8999999999999999 69999999999999999877654
No 34
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.9e-35 Score=268.20 Aligned_cols=299 Identities=22% Similarity=0.390 Sum_probs=256.8
Q ss_pred CCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE
Q 008005 253 HQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (581)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 332 (581)
..+..+.+|+.....+..|.+.|..+.|-++...|++|+.|..|++|++... +.....++.+..++|+.+.|.++++++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceE
Confidence 4455678899999999999999999999999999999999999999999754 356778889999999999999999999
Q ss_pred EEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC
Q 008005 333 LTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~ 412 (581)
++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+....+....... ..+.+|..+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--
Confidence 99999999999999999999999999999999999987777999999999999999875544333222 256677766
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc--ceeE
Q 008005 413 GKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFV 489 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~ 489 (581)
...++++-.|++|++||.++.. ....+..+.|+++..++++..+++++.|.++.+.|+++. .+...+..... ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccccccc
Confidence 5578888899999999998877 666777889999999999999999999999999999997 66666653321 1122
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC--CEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+.+| +|++.|+++||.||.|+||++.++++...+..... .|++++|+|.| ..+++++.++.+.+|.
T Consensus 391 trvvf-Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVF-SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEE-CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence 34444 99999999999999999999999999988876544 59999999999 7899999999999994
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-32 Score=257.73 Aligned_cols=323 Identities=16% Similarity=0.260 Sum_probs=267.4
Q ss_pred ceeccCCCCCceeeccCCCCccc-c-cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNR-I-PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~ 314 (581)
+++...+...--+|....+..-+ + ......++..|...++-..|||.|.|+|+|...|+|+|||.... ...+..+++
T Consensus 22 ~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~ 100 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQ 100 (603)
T ss_pred eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeee
Confidence 45555555555566554432211 1 22336678899999999999999999999999999999999743 344667788
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCC--CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCC
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~ 391 (581)
.-.++|..++|+++++.|++.+.. ...+++-.++|..+..+.+|...|.++.|-|... ++++|+.|++|.+|+=...
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence 889999999999999999888753 3344455558888999999999999999998765 4899999999999998777
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e-eE---EecCCceEEEEECCCCCEEEEEeeCCcEE
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E-RW---IEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-~~---~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
+.......|..-|+++.|+|||.++++++.||.+.+||-.++. . .+ ..|.+.|..++|+||+..+++++.|.+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 7777777888899999999999999999999999999999987 2 22 26899999999999999999999999999
Q ss_pred EEEecCCCceeEEEecccc-ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEE
Q 008005 467 LWSIESDPKLVSRYKGHKR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 545 (581)
|||+.+. ++++++..... ....+.+.+ . ...|++.+.+|.|.+++...+.++..+.+|...|+++..+|++ .+|
T Consensus 261 IWdVs~~-slv~t~~~~~~v~dqqvG~lW-q--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i 335 (603)
T KOG0318|consen 261 IWDVSTN-SLVSTWPMGSTVEDQQVGCLW-Q--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTI 335 (603)
T ss_pred EEEeecc-ceEEEeecCCchhceEEEEEE-e--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEE
Confidence 9999998 77777764443 223344444 3 5689999999999999999999999999999999999999999 799
Q ss_pred EEEECCCcEEEecCCccccc
Q 008005 546 ASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+||+.||.|.-|+...+..-
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EeeccCceEEEEecCCcccc
Confidence 99999999999999987754
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=258.71 Aligned_cols=252 Identities=20% Similarity=0.366 Sum_probs=228.1
Q ss_pred cccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
....++...++||++.|..++|+..|++||+++.|-.+++||.++ ...+++.+.+|...|.+++|-|.|.++++++.|
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 345566889999999999999999999999999999999999974 356778889999999999999999999999999
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC------
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD------ 412 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~------ 412 (581)
.+|+.|++.+|-++.++.+|...|..+..+.||..+++++.|.+|++|-+.+++.......|..+|.+++|.|.
T Consensus 215 ~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred cceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 99999999999999999999999999999999999999999999999999999888888888889999999763
Q ss_pred ---------CCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe
Q 008005 413 ---------GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 413 ---------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
+.++.+++.|++|++||+.++. ....+|...|..++|+|.|+||+++..|+++++||+.+. +..+.+.
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 3589999999999999999998 667799999999999999999999999999999999998 7888888
Q ss_pred ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 482 ~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.|..-+. +..++.+..++++|+-|..+++|..
T Consensus 374 ah~hfvt---~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVT---SLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeE---EEecCCCCceEEeccccceeeeeec
Confidence 8877643 3344667779999999999999974
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=247.81 Aligned_cols=287 Identities=17% Similarity=0.294 Sum_probs=239.7
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....+.+|++.|+|+.||.||.+||||+.+|.|+||+..++. ....+...-..|.=+.|+|.+..|+.|+.||.+.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~---~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG---EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc---eEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 577889999999999999999999999999999999998764 33444455567888999999999999999999999
Q ss_pred EEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-CccccEEEEEEeeCCCEEEEEEcC
Q 008005 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
|.+.++...+.+.+|..++++-.|.|+|++++++..||+|++||+.++....... .......++.++..+..++.+..+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9999988889999999999999999999999999999999999998876544333 334467888999999999999999
Q ss_pred CeEEEEECCCCeeeEE----------ecCCc---eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008005 423 AAILLLDREANFERWI----------EEEEV---ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~----------~~~~~---i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
+.+++.+..+++.... .+... |.++.++..-.+.++|+.||+|.|||+... .++..-.|...+
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V-- 330 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGV-- 330 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCce--
Confidence 9888888777662221 22333 444455556678899999999999999874 344445566553
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+.+.| -+ ..+|++++.||.|+.||.++|++...+.+|...|.+++.+|+. ++++|+|.|++.+|+++.
T Consensus 331 ~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence 44444 33 6799999999999999999999999999999999999999999 799999999999999874
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=260.00 Aligned_cols=273 Identities=22% Similarity=0.390 Sum_probs=234.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
..+.|+|+.+ |...+++|..|++|+|||..+- .+...+.||++.|.|+.|. .+.+++|+.|.+|+|||+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 4578999998 5568999999999999999654 6778899999999999985 5699999999999999999999
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe---EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
++.++-.|...|..+.|+ ++++++++.|.++.+||+.... +......|...|+.+.|+. +++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 999999999999999997 5699999999999999997543 3344456777899888864 59999999999999
Q ss_pred EECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE
Q 008005 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
|+..+.. ....+|...|.|+.+ .++++++|+.|.+|++||+..+ ..++.+.||..-+..++ .+.+.+++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciR-----Fd~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR-----FDNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhee-----ecCceeeec
Confidence 9999988 455678888888887 6899999999999999999998 89999999998755543 367899999
Q ss_pred eCCCcEEEEeCCCCc---------eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 506 SEDSQVYIWHRYTGE---------LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 506 s~dg~I~iwd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+.||+|+|||+..+. ++..+..|++.|..+.|.. ..+++++.|.+|.|||+.++..-
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCcc
Confidence 999999999987653 3455667999999999965 57999999999999999876543
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-32 Score=237.03 Aligned_cols=285 Identities=18% Similarity=0.309 Sum_probs=236.0
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+.||..+++.+.++.+|.+|.+|+.|.++.||-..++ +.+.++.+|++.|+|+...-+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 57899999999999999999999999999999988766 566889999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-----CCcEEEEeCC-------CCeEEeeccCccccEEEEEEeeCCC
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLD-------GRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
++|+++..++.. .+|..+.|+++|++++.... .+.|.++|++ ..+.......+...++.+-|.|-++
T Consensus 82 ~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999988654 58999999999998887654 4679999996 3333333334446899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 415 RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
.|++|..+|.|..||.+++. .....|...|+.+.++||..++++++.|.+-++||..+. ..++++..... +.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~P----vN 235 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERP----VN 235 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccc----cc
Confidence 99999999999999999976 333567889999999999999999999999999999997 77777765443 44
Q ss_pred eeecCCCCcEEEEEeCCCc--E------------EEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 492 SCFGGFEQAFIASGSEDSQ--V------------YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~--I------------~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+...+|...+++.|+.... | ++|++-..+.+..+++|-++|++++|+|+| ...+||+.||.|++.
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLH 314 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEEE
Confidence 4455776666666654322 2 222222234567788999999999999999 799999999999998
Q ss_pred cCCc
Q 008005 558 GLDQ 561 (581)
Q Consensus 558 ~~~~ 561 (581)
.++.
T Consensus 315 ~Fd~ 318 (327)
T KOG0643|consen 315 HFDS 318 (327)
T ss_pred Eecc
Confidence 6654
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.1e-32 Score=235.09 Aligned_cols=286 Identities=22% Similarity=0.375 Sum_probs=246.6
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vw 344 (581)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. .+.......+|.+.|-.++|+| +...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999865 3444456789999999999998 56789999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
|++.++++..+......+ -+.|+|+|.++++++.|..|.+.|.++.+......... .+..++|+.++..++.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeecCCCCEEEEecCCce
Confidence 999999999887766555 57899999999999999999999998877766555543 7889999988888888888899
Q ss_pred EEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE
Q 008005 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|.|......+ .....|.....|+.|+|+|++|++|+.|..+.+||+... ..++.+.-+.-+ ++...++.+|++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwp---VRTlSFS~dg~~l 246 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWP---VRTLSFSHDGRML 246 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCc---eEEEEeccCccee
Confidence 9999887665 666788899999999999999999999999999999876 666777666555 6666668999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC---------CcEEEecCC
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD---------RTIRIWGLD 560 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D---------g~I~iW~~~ 560 (581)
|+||+|..|-|=++.+|..+..++ +.++.+.++|+|.. .+||-+++| |+|+++.+.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence 999999999999999999999987 78999999999998 588877765 677877664
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-32 Score=261.42 Aligned_cols=305 Identities=18% Similarity=0.257 Sum_probs=264.2
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
.+.+..|++.|.++.|+|...+++++-.+|.|.|||.++. ...+.+.-..-+|++..|-+..+.+++|+.|..|+||
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 3456669999999999999999999999999999999876 5667788888999999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEee-CCCEEEEEEcC
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICRE 422 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d 422 (581)
+..+++.++.|..|.+.|.+++.+|...++++++.|-+|++||.+. -.+.+....|..-|.+++|+| |.+.+++++-|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 9999999999999999999999999999999999999999999975 456667778888999999998 56799999999
Q ss_pred CeEEEEECCCCe--eeEEecCCceEEEEECCC--CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 423 AAILLLDREANF--ERWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 423 g~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
++|++|.+.+.. ..+..|...|+++++-+. ..+|++|+.|..|++||..+. .+++++.||... +...+++|.
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N---vs~v~fhp~ 238 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN---VSFVFFHPE 238 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc---ceEEEecCC
Confidence 999999999877 666789999999999874 469999999999999999998 899999999988 555666899
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccCCCc-eEEec
Q 008005 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNG-IVHHC 577 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~-~~~~~ 577 (581)
-.++++|++||+++||+..+-+...++.-.-..|+|++-.+.+ ..++.|.+.|.|.+ .+...+.......++ ++|+.
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~ 316 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAV 316 (794)
T ss_pred CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeEEEeccCCcEEE-EccCCCCceeecCCccEEEEc
Confidence 9999999999999999999988888888778899999999887 57888877776654 444444333333333 55554
Q ss_pred C
Q 008005 578 N 578 (581)
Q Consensus 578 ~ 578 (581)
-
T Consensus 317 ~ 317 (794)
T KOG0276|consen 317 H 317 (794)
T ss_pred C
Confidence 3
No 42
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=275.37 Aligned_cols=249 Identities=27% Similarity=0.470 Sum_probs=215.5
Q ss_pred ceeecc-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC----------------------------C--e------
Q 008005 264 TLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----------------------------G--Q------ 306 (581)
Q Consensus 264 ~~~~l~-~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----------------------------~--~------ 306 (581)
..+.+. +|.+.||++.||+||+|||+||.||.|+||.+... . .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 89999999999999999999999999999998640 0 0
Q ss_pred ---------------------eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEE
Q 008005 307 ---------------------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (581)
Q Consensus 307 ---------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 365 (581)
-++...+.||.+.|..+.||.+ ++|++++.|.+|++|++...+|++.| .|...|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 0233457899999999999965 59999999999999999999999998 678899999
Q ss_pred EEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE------
Q 008005 366 GWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI------ 438 (581)
Q Consensus 366 ~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------ 438 (581)
+|+| |.++|++|+-||.|++|++...++..|...+. -|++++|.|||+..++|+.+|.+++|+....+....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 88999999999999999999999999998885 899999999999999999999999999988762111
Q ss_pred ----ecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEE
Q 008005 439 ----EEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 439 ----~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
.....|+.+.|.| +...+++.+.|..|+|||.++. .++..|++.......+.+.| +.+|++|+++++|..|++
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEE
Confidence 1123799999998 4446888999999999999887 88999998888777787777 569999999999999999
Q ss_pred EeCC
Q 008005 514 WHRY 517 (581)
Q Consensus 514 wd~~ 517 (581)
|+..
T Consensus 573 W~~~ 576 (712)
T KOG0283|consen 573 WKND 576 (712)
T ss_pred EeCC
Confidence 9974
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=262.50 Aligned_cols=321 Identities=21% Similarity=0.343 Sum_probs=269.1
Q ss_pred CCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEE
Q 008005 243 SDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322 (581)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 322 (581)
.|+.+.+|+... .....++.||+.+|+++.|...|..||+||.|+.|.+||+-.. .-...+.||...|+.
T Consensus 85 aDGsVqif~~~s-------~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E---~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 85 ADGSVQIFSLES-------EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE---EGLFRLRGHKDSITQ 154 (888)
T ss_pred cCceEEeeccCC-------CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc---eeeEEeecchHHHhH
Confidence 344555555432 2457789999999999999999999999999999999999744 345678999999999
Q ss_pred EEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC------------
Q 008005 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG------------ 390 (581)
Q Consensus 323 l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~------------ 390 (581)
+-|..+.+++++++.|+.|++||+++..|..+.-.|...++.+++.+ +.+++++.|+.+++|++..
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccce
Confidence 99998889999999999999999999999999999999999999986 7899999999999999810
Q ss_pred ----C---------eEE----------eecc-------------------------------------------------
Q 008005 391 ----R---------ELE----------SWKG------------------------------------------------- 398 (581)
Q Consensus 391 ----~---------~~~----------~~~~------------------------------------------------- 398 (581)
+ .+. ....
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 0 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 008005 399 -------------------------------------------------------------------------------- 398 (581)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (581)
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence
Q ss_pred -----------------------------------------------------------CccccEEEEEEeeCCCEEEEE
Q 008005 399 -----------------------------------------------------------QKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 399 -----------------------------------------------------------~~~~~i~~i~~~~~~~~l~~~ 419 (581)
.|.+.|.+++.+||+..++++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 566788999999999999999
Q ss_pred EcCCeEEEEECCCCe--------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 420 CREAAILLLDREANF--------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~--------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
+.|.+|++||..-.. .+.......|.|+.+|||+++|+++--|+++++|-+++. +..-.+.||.-
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkL 551 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKL 551 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeeccccc
Confidence 999999999864221 244566788999999999999999999999999999987 77788889998
Q ss_pred ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++.+ .-.+|++++++|||.|.+|+||-++-|.+-..+-+|...|.++.|.|.. +++.|||.|+.|+-||-...+..
T Consensus 552 PV~s---mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 552 PVLS---MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ceeE---EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh
Confidence 8544 4458999999999999999999999999999999999999999999988 89999999999999999887766
Q ss_pred cccC-----CCceEEecCCC
Q 008005 566 HRDQ-----SNGIVHHCNGR 580 (581)
Q Consensus 566 ~~~~-----~~~~~~~~~G~ 580 (581)
+... ....+..|+|+
T Consensus 628 q~L~~H~~ev~cLav~~~G~ 647 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGS 647 (888)
T ss_pred eeeccchheeeeeEEcCCCC
Confidence 5433 44555666664
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-34 Score=261.01 Aligned_cols=271 Identities=19% Similarity=0.323 Sum_probs=232.5
Q ss_pred Hccc-cceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEE
Q 008005 232 VQRD-SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK 310 (581)
Q Consensus 232 ~q~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~ 310 (581)
|.++ +.++..+..++++||.... ...-..+..|..+|.++.|+++|.++++|+.+|.|++|+..-+ .+
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----nV 172 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----NV 172 (464)
T ss_pred EcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----hh
Confidence 4444 4567788888999997532 2234467899999999999999999999999999999998643 22
Q ss_pred EEecCC-CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008005 311 HRLSGH-RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 311 ~~~~~h-~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 389 (581)
+.+..| ...|++++|+|++..+++|+.||+|+|||....+....+.+|.-.|.++.|+|....+++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 344444 4899999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECC-CCCEEEEEeeCCcEE
Q 008005 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIH 466 (581)
Q Consensus 390 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~ 466 (581)
++........|...|..+.|++++++|++++.|..++++|+++.+ ..+..|...++++.|+| ...+|.+|+.||.|.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 999888888888899999999999999999999999999999666 56678999999999999 667888999999999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.|.+.........-.+|... |....++|-|.+|++|+.|.++++|..
T Consensus 333 h~~v~~~~p~~~i~~AHd~~---iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGE---IWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccccccCCCcccccc---eeeeeccccceeEeecCCCcceeeecc
Confidence 99998542333444566665 445556999999999999999999974
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=247.92 Aligned_cols=255 Identities=18% Similarity=0.270 Sum_probs=234.0
Q ss_pred eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008005 306 QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 306 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 385 (581)
.++....+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|+...++.+|-..|..+++++-..++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCC
Q 008005 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
||+..+++......|-..|.+++.+|.-..|++++.|.++++||+++.. ..+.+|..+|.++.+.|-...+++|+.|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 9999988888888888899999999999999999999999999999987 56667999999999999888999999999
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCc
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
+|++||++.+ +....+..|... +++...+|....+|+++.|. |+-|++..|..+..+.+|.+.|++++.+.|+
T Consensus 300 tvrlWDl~ag-kt~~tlt~hkks---vral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-- 372 (460)
T KOG0285|consen 300 TVRLWDLRAG-KTMITLTHHKKS---VRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-- 372 (460)
T ss_pred eEEEeeeccC-ceeEeeecccce---eeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc--
Confidence 9999999998 677777777765 55666689999999998875 9999999999999999999999999999998
Q ss_pred EEEEEECCCcEEEecCCccccccc
Q 008005 544 MLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
++++|++.|.+.+||.+++...+.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred eEEEcCCceEEEEEecCcCccccc
Confidence 899999999999999998765544
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=233.37 Aligned_cols=292 Identities=21% Similarity=0.319 Sum_probs=245.8
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC--CCc
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--EEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~--dg~ 340 (581)
++.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++ ...+++..+.-.|..++|......++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 345566667889999999999999999999999999999887 455667777788999999877777777766 889
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
|+.-++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++........... .-..++|.|+|-.+|++.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALAN 159 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999966655544443 345578999999999999
Q ss_pred cCCeEEEEECCCCe----eeEE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccce-eEEEe
Q 008005 421 REAAILLLDREANF----ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-FVIRS 492 (581)
Q Consensus 421 ~dg~i~i~d~~~~~----~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~ 492 (581)
....|++||++.-. ..+. ......+.+.|||||++++.++..+.+++.|.-++ .....+.++.... ..+.+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeE
Confidence 88899999998753 2222 33567899999999999999999999999999888 6888888877654 23444
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+| .|+++++++|+.||+|.+|++++|+.+..+.+ +.+++.++.|+|.- -+++|+ +..+.+|-......
T Consensus 239 ~f-tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 239 TF-TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred EE-CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeec--CceEEEEecccccc
Confidence 44 99999999999999999999999999999998 78999999999966 355554 56899998775544
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-31 Score=242.58 Aligned_cols=287 Identities=22% Similarity=0.337 Sum_probs=239.4
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCC---CeEEEeeC
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQ 337 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~~~ 337 (581)
|.++++.+. |.+.|.++... ++.+++|+.||.++|||... +....+.+|.++|.+++|.-.. ..|++++.
T Consensus 95 aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 95 APKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 334444443 99999999987 77999999999999999873 4667889999999998886533 35999999
Q ss_pred CCcEEEEEcCCCcE----EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----------------------
Q 008005 338 EEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----------------------- 390 (581)
Q Consensus 338 dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~----------------------- 390 (581)
|.++++|.++.+.. ++...+|...|-++...+++..+++|+.|..|.+|+...
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 99999999987753 334459999999999999999999999999999999321
Q ss_pred --CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 391 --RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 391 --~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
+........|..+|.++.|++ ...+++++.|.+|+.||+.++. ......+..+.++.++|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceee
Confidence 122334457778999999998 7789999999999999999988 566677888999999999999999999999999
Q ss_pred EEecCCC--ceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCCCCEEEEEEcCCCCc
Q 008005 468 WSIESDP--KLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 468 wd~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
||.+++. -....|.+|.+.+.. +-++| +...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+..+
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVss---vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-- 401 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSS---VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-- 401 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhh---eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc--
Confidence 9998754 345678899886443 33344 45678999999999999999887 999999999999999998754
Q ss_pred EEEEEECCCcEEEecCC
Q 008005 544 MLASASDDRTIRIWGLD 560 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~ 560 (581)
.|+|||.|.+|+|+.-.
T Consensus 402 ~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEeccCcceEEEeccc
Confidence 89999999999998754
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=262.23 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=252.2
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
..+.||...|.++++|.+...+++|+ .+.++||+..+. ++++++.. +.+.+..|.|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~---kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL---KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc---ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 35679999999999999998888875 567999999876 56666653 3799999999999999999999999999
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----CeE---Eeec----cCccccEEEEEEeeCC
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----REL---ESWK----GQKTLRISDMAITDDG 413 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~~---~~~~----~~~~~~i~~i~~~~~~ 413 (581)
+.+...+.++..|.+.+++++.+||+..+++|+.|.+|++||..- +.. .... -.-...|.|+.++|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999731 111 1111 1112479999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++|+++--|+++++|-+++.+ ....+|.-+|.|+.++||++.+++|+.|..|++|-++-+ .+-+.+.+|...+..+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEE
Confidence 999999999999999999887 778899999999999999999999999999999999988 78888999988754443
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+-|...++++++.|+.|+-||-...+.+..+.+|...|+|++.+|+| .+++|+|.|.+|++|......
T Consensus 600 ---F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 600 ---FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ---EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccCcc
Confidence 36688899999999999999999999999999999999999999999 799999999999999987643
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=251.22 Aligned_cols=300 Identities=20% Similarity=0.290 Sum_probs=240.9
Q ss_pred cccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe-eeEEEEe-cCCCCCEEEEEeCCCCCeEEE
Q 008005 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRL-SGHRKPVFTVSWSPNDHQLLT 334 (581)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~V~~l~~sp~~~~l~s 334 (581)
...+|...-..+.+|+..|.++++.|.|..|++||.|.+|++||+..... ....+.+ ......|++++|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 34578888889999999999999999999999999999999999974321 1111222 234456999999999999999
Q ss_pred eeCCCcEEEEEcCCCcEEEE------------EecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe----EEeec
Q 008005 335 CGQEEAIRRWDVNSGECLHV------------YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE----LESWK 397 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~----~~~~~ 397 (581)
.+.....+|+|-...+.... -++|...++|.+|+|+. ..+++++.||++++||++..+ +....
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 88888999999654332222 24788899999999954 568999999999999996422 11111
Q ss_pred --cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCC--ceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 398 --GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 398 --~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.....+++.++|++||+.+++|+.||.|.+|+..... .....|.. .|+|+.||+||++|++-+.|+++++|
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 2333478999999999999999999999999986654 22335555 89999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCC
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
|++...+++....+-........||| +|+.++|++|+. .|.+++||..+.+.+..+.-....|..+.|||.-
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL- 469 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL- 469 (641)
T ss_pred eccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh-
Confidence 99998788887777665544455566 999999999875 5689999999999999888788899999999988
Q ss_pred cEEEEEECCCcEEEec
Q 008005 543 HMLASASDDRTIRIWG 558 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~ 558 (581)
+.|+.++.||++++|=
T Consensus 470 NQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYY 485 (641)
T ss_pred hheeeecCCCceEEEE
Confidence 6788888899999863
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-31 Score=264.85 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=256.1
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.++..+..|..++|+|...+++++-..|.|++||.+-+ .++..+..|.++|..++|+|++.++++||.|-.|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45667788999999999999999999999999999866 677899999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.+.+|+.++.+|-+.|..+.|++.-.++++++.|.+|+||+..++.+......|...|.|..|+|....+++++-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCe-------------------------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-C
Q 008005 427 LLDREANF-------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P 474 (581)
Q Consensus 427 i~d~~~~~-------------------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~ 474 (581)
+||+..-. ....+|...|+-++|+|.-..+++|+.|..|++|.+... .
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99975421 112357778999999999999999999999999998653 2
Q ss_pred ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
-.+.+..+|.+. +.++.++|...+|++.|+|++|+|||+...+.+.+++...+..+.++-+|.. ++++ ++.|+-+
T Consensus 241 WEvDtcrgH~nn---Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLfA-AgHDsGm 315 (1202)
T KOG0292|consen 241 WEVDTCRGHYNN---VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLFA-AGHDSGM 315 (1202)
T ss_pred eeehhhhcccCC---cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ceee-eecCCce
Confidence 345567788887 4455559999999999999999999999999999998778899999999998 4554 5566777
Q ss_pred EEecCCcccc
Q 008005 555 RIWGLDQINM 564 (581)
Q Consensus 555 ~iW~~~~~~~ 564 (581)
.+|.++....
T Consensus 316 ~VFkleRErp 325 (1202)
T KOG0292|consen 316 IVFKLERERP 325 (1202)
T ss_pred EEEEEcccCc
Confidence 7888774443
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-31 Score=261.36 Aligned_cols=308 Identities=18% Similarity=0.256 Sum_probs=258.0
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEE-cCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQF-SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
+..+.+..+.+|+.. ..+....+-|-.+.|..++| .|+.++||.++..+.+++|+..+.. ...+.+|+
T Consensus 297 l~vtaeQnl~l~d~~-------~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----c~ii~GH~ 365 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDED-------ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY----CQIIPGHT 365 (775)
T ss_pred EEEEccceEEEEEcc-------ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc----eEEEeCch
Confidence 334445555555222 23456677889999999997 4677899999999999999887542 23789999
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc----EEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE----CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~ 392 (581)
..|.++....+|.+|+||+.|.++++|.++++. ++....+|...|.+++++..+ ..|++++.|+++++|++...+
T Consensus 366 e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~ 445 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK 445 (775)
T ss_pred hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcc
Confidence 999999966678899999999999999885443 455677999999999997644 568899999999999996511
Q ss_pred E---------EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 393 L---------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 393 ~---------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
. ......|...|++++++|+.+.+++|+.|.+.++|++++.. ..+.+|...+.++.|+|..+.+++++.
T Consensus 446 ~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 446 ETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred cccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccC
Confidence 1 11234566789999999999999999999999999999766 567789999999999999999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
|++|+||.+.+. .+++++.||...+ +++.| -.++..|++++.||-|++|++++++++.++.+|++.|++++.+|..
T Consensus 526 D~TvKIW~is~f-SClkT~eGH~~aV--lra~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 526 DKTVKIWSISTF-SCLKTFEGHTSAV--LRASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred CceEEEEEeccc-eeeeeecCcccee--Eeeee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 999999999998 8999999999874 44555 4588999999999999999999999999999999999999999999
Q ss_pred CcEEEEEECCCcEEEecCCcc
Q 008005 542 LHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.+++||+.||.|.+|.=.+.
T Consensus 602 -~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 602 -DMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred -ceeEecCCCeEEEEeecCcH
Confidence 69999999999999975443
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-31 Score=257.66 Aligned_cols=254 Identities=18% Similarity=0.345 Sum_probs=235.0
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
+++..++..|.++.|+|....++++-.+|.|.|||.++...++.+.....+|.++.|-+-.+++++|+.|..|++|+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECC-CCCEEEEEeeCCcEE
Q 008005 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIH 466 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~ 466 (581)
.+.......|..-|++++.+|...++++++.|-+|++||.+..- ..+.+|...|.+++|.| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 98888888888899999999999999999999999999999876 67788999999999999 778999999999999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
+|.+... .+..++.+|...+..+.... ..+..++++|++|..|+|||..+..++.++.||...|+.+.|+|.-| +++
T Consensus 167 VWslgs~-~~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iii 243 (794)
T KOG0276|consen 167 VWSLGSP-HPNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-III 243 (794)
T ss_pred EEEcCCC-CCceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEE
Confidence 9999887 88899999999977765543 55678999999999999999999999999999999999999999995 999
Q ss_pred EEECCCcEEEecCCccccccc
Q 008005 547 SASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
|||.||+||||+-.+.++...
T Consensus 244 sgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred EecCCccEEEecCcceehhhh
Confidence 999999999999988776643
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=8.7e-30 Score=236.02 Aligned_cols=280 Identities=16% Similarity=0.246 Sum_probs=243.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
..|+++...|....+++|+.|.++.++|...+ .....+.||...|+.+.|+|+...+++++.|..|+||......+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 46788888888778999999999999999876 566889999999999999999999999999999999999888888
Q ss_pred EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC--ccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ--KTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.....|..+|+.+..+|.|.+|++++.||+..+.|++++........ ....+++.+|+|||..+.+|..|+.|++||+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 88889999999999999999999999999999999988766554443 3346899999999999999999999999999
Q ss_pred CCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 431 EANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 431 ~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
..+. ..+..|.++|..++|+.+|-||++++.|+.|++||++.. +..+++...... .+....+...|.+++.++.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccc--cceeEEEcCCCCeEEeecce
Confidence 9877 677789999999999999999999999999999999987 556666544432 23334448899999999888
Q ss_pred CcEEEEeC--CCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 509 SQVYIWHR--YTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 509 g~I~iwd~--~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
=+|++++- .++..+..+..|.+..+++.|.... .+++++|.|..++++.+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 88888873 3567788888899999999999988 79999999999998865
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=223.42 Aligned_cols=252 Identities=17% Similarity=0.285 Sum_probs=222.7
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 388 (581)
....+..|.++|.++.|+-||+|.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCc
Q 008005 389 DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 389 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
.+++.......|...|+.+.|+.+...+++|+-|.++++||.+... +.+-.....|.++... +..+++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 9999998888899999999999999999999999999999999876 3334556778888874 667999999999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEE--EEEcCCCC
Q 008005 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNC--VSWNPANL 542 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~--l~~~p~~~ 542 (581)
++.||++.+ ....-+.+|+ +.+..++++++...+++.|+++++.|-.+|+++..+++|...=.. .+++...
T Consensus 167 vRtydiR~G-~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd- 239 (307)
T KOG0316|consen 167 VRTYDIRKG-TLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD- 239 (307)
T ss_pred EEEEEeecc-eeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-
Confidence 999999998 6666666665 445556999999999999999999999999999999999775443 4566666
Q ss_pred cEEEEEECCCcEEEecCCccccccccC
Q 008005 543 HMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+++||+||.|.+||+.+..+.....
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeec
Confidence 689999999999999999888765544
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=258.43 Aligned_cols=257 Identities=19% Similarity=0.350 Sum_probs=225.0
Q ss_pred EEecC-CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 311 HRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 311 ~~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
..+.. |...|.++.|+++|+.+++++.++.+++|+..+++ ..+.+.+|...|.+++|+|++.++++++.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 33434 37889999999999999999999999999998877 7777789999999999999999999999999999999
Q ss_pred C-CCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCc
Q 008005 388 L-DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 388 ~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
+ ..+........|...|++++|+|+++.+++|+.|++|++||++++. ..+..|...|++++|++++++|++++.|+.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 5556666666788899999999999999999999999999999977 677789999999999999999999999999
Q ss_pred EEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC---EEEEEEcCC
Q 008005 465 IHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS---VNCVSWNPA 540 (581)
Q Consensus 465 i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~---v~~l~~~p~ 540 (581)
|++||+.++.. +...+.++.... .+..+.++|++.++++++.|+.+++||+..+.....+.+|... +.+...++.
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 99999999833 466777777765 6777777999999999999999999999999999999999774 344455677
Q ss_pred CCcEEEEEECCCcEEEecCCccccccccC
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+ .++++++.|+.|++|++.++.......
T Consensus 391 ~-~~i~sg~~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 391 G-KLIYSGSEDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred C-CeEEEEeCCceEEEEeCCccchhhhhc
Confidence 7 799999999999999999876654433
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4e-29 Score=242.28 Aligned_cols=265 Identities=27% Similarity=0.417 Sum_probs=225.1
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|.++++.+++++.||.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999988888889988999999999999999999999999999987
Q ss_pred CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.........+...+.++.|+++++.+++++.++.|.+||+.+.. .....+...+.++.|+|++.++++++.++.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 55544444555689999999998888888889999999998665 3334577889999999999999888889999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEE
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
|++.. +....+..+... +..+.++++++.+++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+++++
T Consensus 163 d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 237 (289)
T cd00200 163 DLRTG-KCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASG 237 (289)
T ss_pred Ecccc-ccceeEecCccc---cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC-cEEEEE
Confidence 99876 667777776654 3444458899899999999999999999999999998899999999999997 788888
Q ss_pred ECCCcEEEecCCcccccccc-----CCCceEEecCCC
Q 008005 549 SDDRTIRIWGLDQINMKHRD-----QSNGIVHHCNGR 580 (581)
Q Consensus 549 s~Dg~I~iW~~~~~~~~~~~-----~~~~~~~~~~G~ 580 (581)
+.||.|++|++.+++..... ....+.++++|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC
Confidence 88999999999876654332 245566777654
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.7e-31 Score=240.38 Aligned_cols=233 Identities=20% Similarity=0.427 Sum_probs=209.2
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
....|+|+.+. +..+++|..|++|+|||..+-.+.+.+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++...
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45679999984 6689999999999999999999999999999999999984 6699999999999999999999988
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
...+|...|..+.|+. .++++++.|.++.+||+.... ....+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 8888888999999874 599999999999999998876 3456888999999995 569999999999999999
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
.+. ..++++.+|... |.+. ...++++++|+.|.+|++||+..|.++..+.||+.-|.++.|.. ..+++|+.
T Consensus 348 st~-efvRtl~gHkRG---IACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---krIVSGaY 418 (499)
T KOG0281|consen 348 STC-EFVRTLNGHKRG---IACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGAY 418 (499)
T ss_pred cce-eeehhhhccccc---ceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---ceeeeccc
Confidence 998 899999999987 3333 45889999999999999999999999999999999999999975 47999999
Q ss_pred CCcEEEecCCccccc
Q 008005 551 DRTIRIWGLDQINMK 565 (581)
Q Consensus 551 Dg~I~iW~~~~~~~~ 565 (581)
||+|++||+..+.-.
T Consensus 419 DGkikvWdl~aaldp 433 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDP 433 (499)
T ss_pred cceEEEEecccccCC
Confidence 999999999877654
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=223.33 Aligned_cols=266 Identities=19% Similarity=0.299 Sum_probs=226.1
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC-CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
.+...+.+|.+.|+.+.|+|+|.+||+||.|..|.+|++. .-+....+++|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3445678999999999999999999999999999999964 345567788999999999999999999999999999999
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeCCCE-EEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCc
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDDGKR-IISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
|+++++.......|..-++.+.-+.-|.. +.+++.|+++++||.++.. .+.......++++.|..++..+.+|+-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99999988888888878888886655554 5567889999999999877 666677888999999999999999999999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCC----CCEEEEE
Q 008005 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHS----GSVNCVS 536 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~----~~v~~l~ 536 (581)
|++||++.+ .....+.||...+. ..+.+++|.++.+-+.|.++++||++.. .++..+.+|. ......+
T Consensus 198 ikvWd~r~~-d~~~~lsGh~DtIt---~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 198 IKVWDLRKN-DGLYTLSGHADTIT---GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred eeeeccccC-cceEEeecccCcee---eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999988 88899999999844 4555899999999999999999997643 4477777763 2345678
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCccccccccC-----CCceEEecC
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHCN 578 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~~ 578 (581)
|+|++ ..+.+++.|..+++||.....+....+ .+.+.|+|.
T Consensus 274 wsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 274 WSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT 319 (338)
T ss_pred ccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence 99999 799999999999999999876665433 566666664
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=219.07 Aligned_cols=280 Identities=18% Similarity=0.252 Sum_probs=228.1
Q ss_pred EEEEEcC--CCCE-EEEE-----eCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEc
Q 008005 276 WFLQFSH--DGKY-LASS-----SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 276 ~~l~~s~--~g~~-lasg-----s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~ 346 (581)
.++.||| .+++ +|++ ...|++.|.++...+.+.....+. -.+.+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788998 3332 2222 246889999997555555555444 4567999999994 467889999999999996
Q ss_pred CC-CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEEEEEEcCC
Q 008005 347 NS-GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (581)
Q Consensus 347 ~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg 423 (581)
.. ..+++.++.|...|.++.|++ ++..+++++.|++|++|+............|...|...+|+| .++.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 357888999999999999998 566788899999999999977666666667778999999998 467899999999
Q ss_pred eEEEEECCCCe--eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC-CC
Q 008005 424 AILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQ 499 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 499 (581)
.+++||++..- ..+..|...+.++.|+. +.+.+++|+.|+.|+.||++.-..++..+.+|.-.+. -..++| ..
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR---kvk~Sph~~ 247 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR---KVKFSPHHA 247 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEE---EEecCcchh
Confidence 99999988654 55677888999999998 6678899999999999999998888888988876644 444455 45
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 500 AFIASGSEDSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.+|++++.|-+++|||...+ ..+.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 68999999999999998754 4566777889999999999988889999999999999985
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.6e-29 Score=216.29 Aligned_cols=268 Identities=20% Similarity=0.340 Sum_probs=216.9
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeec-ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQIL-EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
+...+.+..+.+|+.... + ...+..++ .+|+..|.+++|+|.|++||+||.|.++.||.-. ++.+++..++.||
T Consensus 30 lAscg~Dk~vriw~~~~~--~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEGH 104 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSG--D--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEGH 104 (312)
T ss_pred EEeecCCceEEEEecCCC--C--cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeecc
Confidence 445567777888865531 1 13344444 4899999999999999999999999999999876 4678999999999
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC---cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-C--
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-G-- 390 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~-- 390 (581)
.+.|.|++|+++|.+||+|+.|..|.||.+..+ ++...++.|...|-.+.|+|....|++++.|++|++|+-. .
T Consensus 105 EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 105 ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence 999999999999999999999999999998754 5778899999999999999999999999999999999875 3
Q ss_pred CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
-.+......+...|.+++|++.|..+++++.|+++++|-..+.. ...+...+..+.|. ...|++++.|+.|++|.-
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 34566666777799999999999999999999999999865322 22456778889997 568999999999999987
Q ss_pred cCCC-ce-----eEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCC
Q 008005 471 ESDP-KL-----VSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 471 ~~~~-~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~ 517 (581)
...+ .+ .+.-..|... +.+..+.| ..+.|++|+.||.|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~d---VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVD---VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccc---cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6431 11 1122345444 45555577 47899999999999999864
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=253.32 Aligned_cols=281 Identities=19% Similarity=0.371 Sum_probs=246.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
.|...+.|..|. +.++++++.|++|++|+..++ ......+.+|.+.|+++++..-+.+|++|+.|.++++||..+|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 366788899997 558999999999999999765 2334449999999999999877889999999999999999999
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
+|...+.+|...+.++... ...+++|+.|.+|++|++.++........|..+|.++.++ +..+++|+.|++|.+||
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999999888764 5578889999999999999888888887788899999998 78999999999999999
Q ss_pred CCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC
Q 008005 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
..+.+ .....|...|.++.+.+. ..++.|+.|+.|++||+++..+.+..+.+|...+..+ ...++++++++.
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDNFLVSSSA 431 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----ccccceeEeccc
Confidence 99887 566789999999988765 8999999999999999998656888888888765333 346789999999
Q ss_pred CCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 508 DSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
|++|++||..+++++..+.+ |.+.|..+++. . ..+++++.||++++||+.+++..+.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCchhhh
Confidence 99999999999999999999 67899999987 2 4789999999999999999987764
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.6e-29 Score=258.41 Aligned_cols=293 Identities=16% Similarity=0.224 Sum_probs=239.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEe--CCCeEEEEEcccCC---------eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSS--KDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs--~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
+...|.+++.+|||..+|||+ .||.++||+.+.-. ..+.+.....|.+.|+|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 99999999975211 1234456778999999999999999999999999
Q ss_pred cEEEEEcCC------------------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc
Q 008005 340 AIRRWDVNS------------------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 340 ~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 401 (581)
.|.||.... .+++..+.+|...|..++|+|++.++++++.|++|.+||..+.+.......|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 13677888999999999999999999999999999999999988888888888
Q ss_pred ccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEE-------ecCCceEEEEECCCCCEEEEEee----CCcEEEEE
Q 008005 402 LRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-------EEEEVITSFSLSKDNKYLLVNLI----NQEIHLWS 469 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd 469 (581)
..|..+.|.|-|+++++-+.|++|++|++.+-. ...+ .....+..+.|||||.+|++... -..+.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 899999999999999999999999999976633 2221 22345788999999999998643 34688888
Q ss_pred ecCCCceeEEEeccccceeEEEeeec---CCC-------C----cEEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEE
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFG---GFE-------Q----AFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNC 534 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-------~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~ 534 (581)
-.+. +.-..+-||..+..++++... .+. . ..+|+|+.|++|-||.....+++..... ....|.+
T Consensus 252 R~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 252 RGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred cCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 7665 667778899987555544210 011 1 1689999999999999888777755432 3678999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 535 VSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 535 l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++|+||| ..|+.||.||+|.+..+++.++-
T Consensus 331 msWspdG-~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 331 MSWSPDG-FSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eeEcCCC-CeEEEEecCCeEEEEEcchHHhC
Confidence 9999999 79999999999999999876543
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-29 Score=248.04 Aligned_cols=305 Identities=15% Similarity=0.240 Sum_probs=243.2
Q ss_pred cCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCE
Q 008005 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPV 320 (581)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 320 (581)
+-..+.+.+|+-..+ .++..+..|.++|..++|+|++.++++|+.|..|+||+..+. +++.++.||-+.|
T Consensus 27 slHsG~IQlWDYRM~-------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDYV 96 (1202)
T KOG0292|consen 27 SLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDYV 96 (1202)
T ss_pred eecCceeeeehhhhh-------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhcccccee
Confidence 334456666654333 357889999999999999999999999999999999999765 7889999999999
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC---------
Q 008005 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--------- 391 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------- 391 (581)
..+.|++.-.++++++.|.+|+||++.+++++..+.+|...|.|..|+|....+++++-|.+|++||+.+-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~ 176 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGS 176 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998531
Q ss_pred --------------------eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEE
Q 008005 392 --------------------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSF 447 (581)
Q Consensus 392 --------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~ 447 (581)
.++.....|...|+-++|+|.-..+++|+.|..|++|.....+ ....+|.+.|.++
T Consensus 177 ~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 177 LEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV 256 (1202)
T ss_pred chhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE
Confidence 1223445677789999999999999999999999999987765 4556899999999
Q ss_pred EECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc-------
Q 008005 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE------- 520 (581)
Q Consensus 448 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~------- 520 (581)
-|+|..+.+++.+.|+.|++||+... ..+..+.-....-+.+.. +|..+++++|-+.| +.||.++...
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~laa---hP~lNLfAAgHDsG-m~VFkleRErpa~~v~~ 331 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAA---HPELNLFAAGHDSG-MIVFKLERERPAYAVNG 331 (1202)
T ss_pred EecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEEe---cCCcceeeeecCCc-eEEEEEcccCceEEEcC
Confidence 99999999999999999999999887 778888766555444433 77888877765544 4444433211
Q ss_pred ----------------------eEEEeccC---CCCEEEEEEcCCCCcEEEEEECC-CcEEEecCC
Q 008005 521 ----------------------LVLALAGH---SGSVNCVSWNPANLHMLASASDD-RTIRIWGLD 560 (581)
Q Consensus 521 ----------------------~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s~D-g~I~iW~~~ 560 (581)
.+..++.. ..++.++.++|.....+++...| |.--++.+.
T Consensus 332 n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 332 NGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred CEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 11122221 25788899999875455554444 444555554
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=217.16 Aligned_cols=278 Identities=19% Similarity=0.308 Sum_probs=225.4
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 268 l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
-..-.+.|.+++||| ...+++.||-||+|++|+++..+.... +....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 345678999999999 555677899999999999987544433 566789999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCC--eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
.+++ ...+..|..+|.++.|.+... .|+||+.|++|++||++............ ++.++..- ...++++..+..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCCc
Confidence 9994 567789999999999998665 79999999999999998766555444433 56555443 457889999999
Q ss_pred EEEEECCCCeeeE----EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-CceeEEEecccc------ceeEEEee
Q 008005 425 ILLLDREANFERW----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKR------ARFVIRSC 493 (581)
Q Consensus 425 i~i~d~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~------~~~~i~~~ 493 (581)
|.+|+++++...+ ...+-.+.+++..+|....+.|+-+|.+.+..+... ++.-..|+.|.. .++.+...
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 9999998876322 234556889999999888899999999999988773 233345555552 37777777
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEE-ECC
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDD 551 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~D 551 (581)
.++|.-..|++++.||+..+||-.....+...+.|..+|++.+|+.+| .+++-+ |.|
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G-~ifaYA~gYD 315 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG-SIFAYALGYD 315 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC-CEEEEEeecc
Confidence 778988899999999999999988888888889999999999999999 455543 443
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.6e-28 Score=267.54 Aligned_cols=264 Identities=12% Similarity=0.168 Sum_probs=214.4
Q ss_pred CCeEEEEEcccCCeeeE--EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC----c----EEEEEecCCCeE
Q 008005 293 DQSAIIWEVKEDGQVSL--KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG----E----CLHVYEKTGVGL 362 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v 362 (581)
+|.+++|+......... ...+..|.+.|.+++|+|++++|++|+.|+.|+||++.+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888764321111 1224458999999999999999999999999999997542 1 122232 34578
Q ss_pred EEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCe-eeEEe
Q 008005 363 ISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWIE 439 (581)
Q Consensus 363 ~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 439 (581)
.+++|++ ++..|++++.||+|++||+.++........|...|.+++|+| ++.+|++++.|+.|++||++++. .....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 8999987 478899999999999999998877776777778999999996 78999999999999999998876 33444
Q ss_pred cCCceEEEEEC-CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 440 EEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 440 ~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
....+.++.|+ +++.+|++|+.|+.|++||++........+.+|...+..+.+ . ++.++++++.|+.|++||+..
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f---~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF---V-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE---e-CCCEEEEEECCCEEEEEeCCC
Confidence 55678999995 579999999999999999998864566778888877554433 3 678999999999999999874
Q ss_pred ------CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 519 ------GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 519 ------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+.++..+.+|...+++++|+|++ .+|++|+.|+.|++|+....
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 35788899999999999999999 69999999999999997654
No 66
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.1e-29 Score=231.57 Aligned_cols=293 Identities=19% Similarity=0.272 Sum_probs=241.9
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEE--------------EEe-cCCCCCEEEEEeCCCC
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK--------------HRL-SGHRKPVFTVSWSPND 329 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~V~~l~~sp~~ 329 (581)
+..+..|.-+|+|++++|++++.++++.+|+|.=|++.++.....+ ..- .+|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4567789999999999999999999999999999998766422000 111 3788899999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEE
Q 008005 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 330 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~ 409 (581)
+||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++..........|...|..+..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998899999999999999999987777777777779999999
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccccc-
Q 008005 410 TDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRA- 486 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~- 486 (581)
..-++.+-+|+.|.++++|++.... ..+..+.+.+.|++|-. ...+++|+.+|.|.+|++... +++.... .|.-.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc-CceeEeeccccccC
Confidence 9888888888899999999996655 66777888999999974 567899999999999999887 4444432 23211
Q ss_pred -------eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 487 -------RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 487 -------~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+.+......|...++++|+.+|.|++|-+..+ +++..+. -.+-|++++|+++|..+++..+....+-
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 124555566788899999999999999998877 4555555 5788999999999954666667766665
Q ss_pred EecCC
Q 008005 556 IWGLD 560 (581)
Q Consensus 556 iW~~~ 560 (581)
-|-..
T Consensus 452 RW~~~ 456 (479)
T KOG0299|consen 452 RWWCL 456 (479)
T ss_pred eeeEe
Confidence 55543
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.8e-30 Score=242.75 Aligned_cols=265 Identities=17% Similarity=0.290 Sum_probs=223.0
Q ss_pred eEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 385 (581)
+....+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|.+++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 889999999999999999977 8999999999999999999999999999999999999
Q ss_pred EeCCCCeEEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeC
Q 008005 386 WDLDGRELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
||++++++........ .+.|+.|.|++ +.+++|+.|+.|+.||++++. ..+-.|-+.|..+.|-++++++++.+.|
T Consensus 285 wDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999988776655443 79999999998 889999999999999999998 5556788999999999999999999999
Q ss_pred CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC---ceEEEeccCC--CCEEEEEE
Q 008005 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---ELVLALAGHS--GSVNCVSW 537 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~--~~v~~l~~ 537 (581)
+.+++|+.+.. .+++....+. ...+.++..+|++.++++-+.|+.|.+|.+... .....+.+|. +.-..+.|
T Consensus 364 ks~riWe~~~~-v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 364 KSVRIWENRIP-VPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccEEEEEcCCC-ccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999876 3333222221 223456666999999999999999999986543 2334677884 55667899
Q ss_pred cCCCCcEEEEEECCCcEEEecCCccccccccC-----CCceEEec
Q 008005 538 NPANLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHC 577 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~ 577 (581)
|||| .+|++|+.||.+.+||.++.++....+ .-++.|+|
T Consensus 441 SpDG-~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 441 SPDG-RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred cCCC-CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 9999 799999999999999999887664433 34555554
No 68
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=244.21 Aligned_cols=269 Identities=12% Similarity=0.154 Sum_probs=209.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee----------eEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg 339 (581)
|-..|.....++++..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666667778777777777777777876432111 01124678999999999999 889999999999
Q ss_pred cEEEEEcCCC-------cEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee
Q 008005 340 AIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 340 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~ 411 (581)
+|++||+.++ ..+..+.+|...|.+++|+|++ +.|++|+.|++|++||+.++........|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6899999999999999998877666666777899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--eeEEecCCc-eEEEEECCCCCEEEEEe----eCCcEEEEEecCCCceeEEEeccc
Q 008005 412 DGKRIISICREAAILLLDREANF--ERWIEEEEV-ITSFSLSKDNKYLLVNL----INQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-i~~~~~sp~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
++..|++++.|+.|++||++++. .....|.+. +..+.|.+++..+++++ .|+.|++||++....+......+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 99999999999999999999877 233345443 45778999888877654 378999999987655555444333
Q ss_pred cceeEEEeeecCCCCcEEEEEe-CCCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCC
Q 008005 485 RARFVIRSCFGGFEQAFIASGS-EDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPAN 541 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~ 541 (581)
.. .+...+++++++++++++ .|+.|++||+.+++++..... +..++.+++|.|.-
T Consensus 259 ~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 22 233455688999998887 599999999999988776544 45678899999854
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.3e-30 Score=231.42 Aligned_cols=287 Identities=16% Similarity=0.190 Sum_probs=234.0
Q ss_pred ceeecccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+... .+..++..|.+.|..+++.. ..++++|.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 466789999999999999987 68999999999999999755 56788999999999999986 6899999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE-EEEEEc
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR-IISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~ 421 (581)
.|.++- ...+++.+ ...+..+.-+..+..++|++. .|.|||...........-....|.++.|+|-... |+++..
T Consensus 133 ~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 999865 45566543 345666766666777888765 5999999765555545445557999999997654 555669
Q ss_pred CCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 422 dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
|+.|.+||+++.. .........-+.++|+|.+-.++++..|..++.||++....++..+.+|...+. ...++|.|+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~---dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM---DVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE---EeccCCCcc
Confidence 9999999999988 555556667789999998888999999999999999998888888888877643 344499999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
-+++||.|.+|+||.+..+.....+.. --..|.|+.|+-|. ++++|||+|+.|++|.....+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhh
Confidence 999999999999999887765433321 13579999999999 799999999999999986543
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=220.00 Aligned_cols=294 Identities=17% Similarity=0.337 Sum_probs=249.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
..+.++.+.||.+.||.++.......+.+++.|.+.+||.++++ .++..+.||.+.|+++.|++.+.++++++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcc
Confidence 35567889999999999999888889999999999999999988 677899999999999999999999999999999
Q ss_pred EEEEEc------CC------------------------------C----cEEEEEecCCCeEEEEEEecCCCeEEEEeCC
Q 008005 341 IRRWDV------NS------------------------------G----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380 (581)
Q Consensus 341 i~vwd~------~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 380 (581)
..||.. .. + .++..+.+|...|.++.|...++.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999962 10 0 1345677899999999999999999999999
Q ss_pred CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEE
Q 008005 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 381 g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
.+..+||++++++......|....+.++-+|..+.+++++.|.+.++||.+... ..+.+|...|+++.|..+. .++
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 999999999999999999999999999999999999999999999999999654 6677899999999998754 578
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE-----eccCCCCE
Q 008005 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-----LAGHSGSV 532 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-----~~~h~~~v 532 (581)
+|+.|.+|++||+++...++.++...... ..+.. +..+..|+.--.+..|++||+. |..+.. -.+|..-|
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRtdS~~-NRvav---s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRTDSPA-NRVAV---SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeecCCcc-ceeEe---ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceee
Confidence 89999999999999987787777655432 22323 4456688888888899999986 444333 35899999
Q ss_pred EEEEEcCCCC-cEEEEEECCCcEEEecCCccc
Q 008005 533 NCVSWNPANL-HMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 533 ~~l~~~p~~~-~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.|++|..+.+ .-|++||-|..+.-|.+....
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEecccC
Confidence 9999976543 358899999999999998754
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-28 Score=215.23 Aligned_cols=266 Identities=14% Similarity=0.243 Sum_probs=219.8
Q ss_pred EEEEeCCCeEEEEEcccCC---------eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEec
Q 008005 287 LASSSKDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
+++|+....|.=+++.... .+.....+..|.++|++++.+ +.++|+|+.|.+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5677777766666654222 123456678899999999986 88999999999999999999999999999
Q ss_pred CCCeEEEEEEecCCC--eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008005 358 TGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
|.+.|+++.|.++-. .|++|+.||.|.+|+.....+......|...|+.++++|.++..++.+.|+.++.||+-.+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 89999999999999999988888888888899999999999999999999999999998887
Q ss_pred eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
..........+.+.|+|.|.+++++. ...|-+|.+.+. ........... .+ +.. .-++..+++|++|+.|.+|
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~-~~~i~i~q~d~A-~v~~~i~~~~r---~l-~~~-~l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSG-RNKIDIYQLDNA-SVFREIENPKR---IL-CAT-FLDGSELLVGGDNEWISLK 234 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEe-ccEEEEEecccH-hHhhhhhcccc---ce-eee-ecCCceEEEecCCceEEEe
Confidence 33344455566699999999998877 556889988775 33333333211 12 222 2367899999999999999
Q ss_pred eCCCCceEEEeccCCCCEEEEEE--cCCCCcEEEEEECCCcEEEecCCcc
Q 008005 515 HRYTGELVLALAGHSGSVNCVSW--NPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 515 d~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
|..+..+...+.+|...|.++.+ +|++ .+|+|+|.||.|++||++..
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 99999999999999999999984 4566 79999999999999999876
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=195.44 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=234.5
Q ss_pred cccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC------------CeeeEEEEecCCCCCEEEEEeC
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED------------GQVSLKHRLSGHRKPVFTVSWS 326 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~------------~~~~~~~~~~~h~~~V~~l~~s 326 (581)
...+.++.+++ ....|.+++|+|.|.+.|+|+...+.+|.....- ......+.-+.|.+.|.|.+|+
T Consensus 20 k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 20 KKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred ccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 33445566665 5678999999999999999999999988754310 1122344556799999999999
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCcE-----EEEEecCCCeEEEEEEecC----CCeEEEEe-CCCcEEEEeCCCCeEEee
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGEC-----LHVYEKTGVGLISCGWFLD----GGGIFAGM-TDKSICLWDLDGRELESW 396 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~sg~-~dg~i~vwd~~~~~~~~~ 396 (581)
|+|.+|++|+.|.+|++...+...+ -..+..|++.|..++|..+ +..|++++ .|..|++-|...++...-
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999987765433 2457789999999999753 34455544 466788888877777666
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEe--------cCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~--------~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
...|.+.|.++ ++-++-.+++|+.|.+|++||++-.. ..... ....|.+++..|.|++|++|..|....+
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 77777777765 34467899999999999999998766 22221 2356899999999999999999999999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCCCCEEEEEEcCCCCc
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
||++.+ ..++.|..|... +++..++|...|+.+++.|..|++-|+... -++.....|...+..+.|+|.. .
T Consensus 258 ydirg~-r~iq~f~phsad---ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~ 332 (350)
T KOG0641|consen 258 YDIRGG-RMIQRFHPHSAD---IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-F 332 (350)
T ss_pred EEeeCC-ceeeeeCCCccc---eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-c
Confidence 999998 899999999887 666667999999999999999999997532 2334455689999999999998 6
Q ss_pred EEEEEECCCcEEEecCC
Q 008005 544 MLASASDDRTIRIWGLD 560 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~ 560 (581)
-+++.+.|.++.+|.++
T Consensus 333 sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 333 SFISSSADKTATLWALN 349 (350)
T ss_pred eeeeccCcceEEEeccC
Confidence 88999999999999875
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-28 Score=236.22 Aligned_cols=273 Identities=18% Similarity=0.290 Sum_probs=225.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
-+.|+ ..+.||+|. ...|++|+..++. +.. ....+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~-v~~--l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGS-VTE--LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCc-eEE--eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 46687 345677765 4469999998763 222 233348899999999999999999999999999999999999999
Q ss_pred c-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe-eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 357 K-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 357 ~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
. |...|-+++|. +..+.+|+.|+.|..+|++..+... ....|...|..+.|++|++++++|+.|+.+.|||.....
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 89999999998 6789999999999999998654333 366677799999999999999999999999999996655
Q ss_pred --eeEEecCCceEEEEECC-CCCEEEEEe--eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE--EeC
Q 008005 435 --ERWIEEEEVITSFSLSK-DNKYLLVNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS--GSE 507 (581)
Q Consensus 435 --~~~~~~~~~i~~~~~sp-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--gs~ 507 (581)
..+..|...|..++|+| ....||+|+ .|+.|++||..++ ..+........ |..+.|++..+-|++ |..
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgsQ----VcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGSQ----VCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCCc----eeeEEEcCCCCEEEEecCCC
Confidence 77889999999999999 566777764 4899999999987 55544433322 445555777655544 445
Q ss_pred CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
++.|.||+..+.+.+..+.+|...|..++++||| ..+++|+.|.++++|++-+.
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence 7799999999999999999999999999999999 79999999999999999764
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.8e-28 Score=221.02 Aligned_cols=266 Identities=18% Similarity=0.286 Sum_probs=220.1
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCC---EEEEEeCCCeEEEEEcccCCe-eeEEEE
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ-VSLKHR 312 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~---~lasgs~dg~i~iwd~~~~~~-~~~~~~ 312 (581)
-++..+.++...+|+ ...+...++.||.++|.+++|..... .|++++.|.++++|.++.+.. ......
T Consensus 117 ~IltgsYDg~~riWd--------~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWD--------LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred eEEEeecCCeeEEEe--------cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH
Confidence 445566666666664 34667899999999999888865333 599999999999999976532 233344
Q ss_pred ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-------------------------CcEEEEEecCCCeEEEEEE
Q 008005 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------------------------GECLHVYEKTGVGLISCGW 367 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~ 367 (581)
..||...|-+++..++|..+++|+.|.+|+||+..+ +.++..+.+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 559999999999999999999999999999999321 2356678899999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCC
Q 008005 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE 442 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~ 442 (581)
++ ...+++++.|.+|+.||+.++.......... .+.++.++|..+.|++|+.|..+++||.+++. ..+..|.+
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 87 7789999999999999998877665554443 79999999999999999999999999999876 67789999
Q ss_pred ceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 443 VITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 443 ~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.|.++.|+|.. ..|++++.|+++++||+++...++..+.+|...+..+.+ . ++.+|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW---~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW---N-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec---c-CCceEEeccCcceEEEecc
Confidence 99999999955 567888999999999999986699999999887555443 2 5679999999999999864
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=244.26 Aligned_cols=247 Identities=20% Similarity=0.323 Sum_probs=203.4
Q ss_pred EEec-CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC--------------------------------C--------
Q 008005 311 HRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--------------------------------G-------- 349 (581)
Q Consensus 311 ~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--------------------------------~-------- 349 (581)
+.+. .|.+.|+++.||+||+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 8999999999999999999999999999998754 0
Q ss_pred --------------------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEE
Q 008005 350 --------------------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 350 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~ 409 (581)
+++..|.+|.+.|.++.|+.+ ++|++++.|.+|++|++....+...+.+.. -|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-fVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHND-FVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCC-eeEEEEe
Confidence 123345688899999999965 599999999999999998887777766554 8999999
Q ss_pred ee-CCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc----
Q 008005 410 TD-DGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH---- 483 (581)
Q Consensus 410 ~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---- 483 (581)
+| |.+++++|+-||.|++|++.... ..+.....-|++++|.|||++.++|+.+|.+++|+.... +....+..+
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccC
Confidence 99 67899999999999999999887 666777789999999999999999999999999999886 444433211
Q ss_pred ----ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC--CEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 484 ----KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 484 ----~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
...++.+.+++..++ .|++.+.|..|+|||.++..++..++|+.. .=....|+.|| ++|+++++|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEE
Confidence 113455555544443 677788999999999999999999998643 33566799999 799999999999999
Q ss_pred cCCccc
Q 008005 558 GLDQIN 563 (581)
Q Consensus 558 ~~~~~~ 563 (581)
++....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 986544
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=211.59 Aligned_cols=267 Identities=20% Similarity=0.243 Sum_probs=217.7
Q ss_pred ccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC--eEEEeeC
Q 008005 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQ 337 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~ 337 (581)
+...++..+..|.++|++++. ++.++|+||.|-+|+|||+... .....+..|.+.|+++.|.++-. .|++|+.
T Consensus 31 ~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred eeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 344567788899999999998 6889999999999999999866 34466778999999999998765 8999999
Q ss_pred CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
||.|.+|+.....++..++.|.+.|+.++.+|.++..++.+.|+.++.||+-.+.......... ..+.+.|+|.|.+++
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999996655443333332 345599999999988
Q ss_pred EEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecC
Q 008005 418 SICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
.+..+ .|-+|.+.+.. .........+.++.|. ++..|++|..|+.|.+||..+. .+...+.+|...+..+.... .
T Consensus 185 v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-~ 260 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-N 260 (362)
T ss_pred EEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-c
Confidence 87765 57888887765 3334444567777765 6778999999999999999985 88899999999877776544 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC-----ceEEEeccCCCCEEEEEE
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTG-----ELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~h~~~v~~l~~ 537 (581)
|++.+|+++|.||.|+|||++.. +++..+.. ...++|+..
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 78899999999999999998765 34444443 445566553
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.4e-28 Score=226.51 Aligned_cols=280 Identities=14% Similarity=0.189 Sum_probs=235.8
Q ss_pred ccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 271 HSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
..+.|.+++|||... -+|+++ .-.+.||+..+. ...+++......|.++.|..||++|++|+..|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 446899999999554 344444 346999998755 334555667788999999999999999999999999998777
Q ss_pred cEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-EEEEEEcCCeEEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAILL 427 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i 427 (581)
..++.+..|..++....|+|. +..+++|+.|+.+++||+.+.........|...|.+.+|+|... .+++|+.||.|++
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 778889999999999999995 45677888899999999999887666778888999999999755 7899999999999
Q ss_pred EECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE
Q 008005 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
||++... ...+.|..+|.++.+-|.|..+++++ .+.+++||+.++.+.+..+..|...+++++. ..++..|++|
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l---~s~~~rLlS~ 256 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL---ASDSTRLLSG 256 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEe---ecCCceEeec
Confidence 9999874 67778999999999999999999887 7789999999776777777778777554443 5578999999
Q ss_pred eCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 506 SEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+-|+.|++||+.+.+.+..+. ..++|.+++.+|++ ..++.|..||.+.+=+..
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd-~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDD-QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCC-ceEEEecccceeeeehhh
Confidence 999999999999999988886 57899999999998 799999999988876443
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=224.55 Aligned_cols=264 Identities=19% Similarity=0.266 Sum_probs=217.0
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 385 (581)
..+.+..|.+.|+.+.||++|++||+++.|.+..+|++.... ..+++.+|..+|..+.|+||.+++++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 346688999999999999999999999999999999886543 47788899999999999999999999999999999
Q ss_pred EeCCCCeEEeeccCc-cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEe-cCCceEEEEECCCCCEEEEEeeC
Q 008005 386 WDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE-EEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 386 wd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
||..++......... ...+.+++|.|||..+++|+.|+.+..||+.... ..+.. ....|.+++.++||+++++.+.|
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999988876655443 5689999999999999999999999999999876 23322 33569999999999999999999
Q ss_pred CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC--EEEEEEcCC
Q 008005 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS--VNCVSWNPA 540 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~--v~~l~~~p~ 540 (581)
..|++|+..+. ........+ .+ +.....+.+++++.+--.+..|++||++..+.+..+.||... |..-+|-..
T Consensus 376 ~~i~l~~~e~~-~dr~lise~-~~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 376 KKIRLYNREAR-VDRGLISEE-QP---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred cceeeechhhh-hhhcccccc-Cc---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 99999998874 222222222 22 333444889999999999999999999999999999999754 334456554
Q ss_pred CCcEEEEEECCCcEEEecCCccccccccC-----CCceEEec
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHC 577 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~ 577 (581)
+..+++|||+|+.|+||+..++++..... .+.++|.|
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP 492 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence 44699999999999999999999875433 56666665
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-26 Score=206.98 Aligned_cols=261 Identities=13% Similarity=0.169 Sum_probs=223.7
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~v 385 (581)
+..+.+....+.|+++.|+++|.++++++.|.++++||..++++++++..++..+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334556666788999999999999999999999999999999999999999999999999888888888777 889999
Q ss_pred EeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcE
Q 008005 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
.++.+++.......|...|++++.+|-+..+++++.|++|++||++.....-.-+...-..++|+|+|-++|++.....|
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999999999999999999999999999999997775555555556678999999999999988899
Q ss_pred EEEEecCC-CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCE---EEEEEcCCC
Q 008005 466 HLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSV---NCVSWNPAN 541 (581)
Q Consensus 466 ~iwd~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v---~~l~~~p~~ 541 (581)
++||++.- ..+...+...........-.-++++|++++.++..+.+++.|.-+|....++..+...- .+.+|.||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999874 35566665553333344555669999999999999999999999999999888775432 577899999
Q ss_pred CcEEEEEECCCcEEEecCCccccccccC
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+++++|++||+|.+|++++++......
T Consensus 245 -~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 245 -KFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred -cEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 799999999999999999988765443
No 80
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.5e-26 Score=234.80 Aligned_cols=246 Identities=11% Similarity=0.210 Sum_probs=192.4
Q ss_pred EeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCCc--------EEEEEecCCC
Q 008005 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE--------CLHVYEKTGV 360 (581)
Q Consensus 290 gs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~ 360 (581)
|+.++.|++|+.... .....+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999998643 456788999999999999996 7899999999999999997642 3446778999
Q ss_pred eEEEEEEecCCCeE-EEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeE
Q 008005 361 GLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~ 437 (581)
.|.+++|+|++..+ ++++.|++|++||++++....... +...|.+++|+++|..|++++.|+.|++||++++. ..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999999988764 688999999999998776543333 33579999999999999999999999999999887 334
Q ss_pred EecCCceEE-----EEECCCCCEEEEEeeCC----cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 438 IEEEEVITS-----FSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 438 ~~~~~~i~~-----~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
..|.+.+.+ ..|++++.++++++.++ .|++||++....++..+..+... ..+...+.++++.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS-APLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc-cceEEeeeCCCCCEEEEEECC
Confidence 456554432 34568999999988764 79999999755666665443332 233344446779999999999
Q ss_pred CcEEEEeCCCCceEEEec--cCCCCEEEEEEcCCC
Q 008005 509 SQVYIWHRYTGELVLALA--GHSGSVNCVSWNPAN 541 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~ 541 (581)
+.|++|++..+.. ..+. .+..++.+++|.|+.
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987643 2222 256788999999975
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.1e-27 Score=230.45 Aligned_cols=284 Identities=17% Similarity=0.276 Sum_probs=242.8
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEE-EEeCC-CCCeEEEeeCCCc
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSP-NDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp-~~~~l~s~~~dg~ 340 (581)
+..+.+.||...|..+++.++. .++++|.||++++|+-.. +++...+.+.+|.+.|.+ +++.+ ++-.+++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3467899999999999876654 799999999999999864 445555778889888887 88876 5556999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
|.+|...+..+..++.+|...|.++....++. +++|+.|.++++|-+.. +......|...|.+++.-|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999998877776 99999999999998743 333366777899999999988 899999
Q ss_pred cCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 421 REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 421 ~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
.|.+|++|.-.+....+..|...|..+++-+++ .|++++.||.|++|++.. ..+..+.+|...++.+.. ..++.
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~---~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISM---ALSDG 232 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEe---cCCCC
Confidence 999999999877768888999999999998765 477889999999999954 788999999999888873 45778
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.++++++|++++||+.. ++.+.+.-....|+++.+-++| -+++|+.||.||||..+..
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC--CEEEeccCceEEEEEeccc
Confidence 99999999999999975 7777777666689999999888 4889999999999998743
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.7e-28 Score=208.73 Aligned_cols=241 Identities=14% Similarity=0.224 Sum_probs=204.0
Q ss_pred ccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC
Q 008005 271 HSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 271 h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~ 348 (581)
-.+.+..++|+++. +.+++++.||+++|||... .-.+++.++.|...|.++.|++ ++..+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 46789999999965 4788999999999999653 3357888999999999999998 566788889999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEee-CCCEEEEEEcCCeE
Q 008005 349 GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREAAI 425 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i 425 (581)
++.+.++.+|...|....|+| ..+.+++++.|+++++||++. ++... ...|...+.++.|+. +.+.+++++.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence 999999999999999999999 677899999999999999974 33333 555557899999997 56688999999999
Q ss_pred EEEECCCCe---eeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 426 LLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
+.||++... .....|.-.|..+.|||. ...|++++.|-+++|||...+...+.++.-|..-+..+.+..+ ++.+
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~--~~~~ 293 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF--DPGQ 293 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc--cCce
Confidence 999998866 455678889999999995 4678889999999999998776777788877776555544433 6789
Q ss_pred EEEEeCCCcEEEEeC
Q 008005 502 IASGSEDSQVYIWHR 516 (581)
Q Consensus 502 l~sgs~dg~I~iwd~ 516 (581)
+|+.+.|+.++||+.
T Consensus 294 vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VASTGWDELLYVWNP 308 (311)
T ss_pred eeecccccceeeecc
Confidence 999999999999983
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3e-27 Score=205.57 Aligned_cols=263 Identities=18% Similarity=0.213 Sum_probs=224.9
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE--EEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEe
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH--VYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd 387 (581)
+.+.+|...|.+++|+-+|..|++|+.|+++.+|+++..+... ...+|.+.|-.++|.| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998875543 3457888899999988 567899999999999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEE
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
++.++......... .-.-+.|+|+|.++++++.|..|.+.|.++.. .........+.-++|+.++.+++.....|.|.
T Consensus 94 ~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 98877665555444 34567899999999999999999999999877 44455666788899998888888888889999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
|...... +++..++.|...-. +..++|+|+++|+|+.|..+.+||+..--+++.+..+.-+|..+.|+.+| ++||
T Consensus 173 ILsypsL-kpv~si~AH~snCi---cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-~~lA 247 (313)
T KOG1407|consen 173 ILSYPSL-KPVQSIKAHPSNCI---CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-RMLA 247 (313)
T ss_pred EEecccc-ccccccccCCcceE---EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-ceee
Confidence 9999877 89999999997633 33449999999999999999999999988999999999999999999999 7999
Q ss_pred EEECCCcEEEecCCccccccccC----CCceEEecCC
Q 008005 547 SASDDRTIRIWGLDQINMKHRDQ----SNGIVHHCNG 579 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~~~~~----~~~~~~~~~G 579 (581)
+||+|..|-|=++.+|...+..+ ...++|+|.-
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR 284 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence 99999999999999998766544 6778888764
No 84
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=231.61 Aligned_cols=323 Identities=18% Similarity=0.269 Sum_probs=252.0
Q ss_pred cceeccCCCCCceeeccCCCCcccc--ccc--ceeecccccCcEEEEEEcCC-----------CCEEEEEeCCCeEEEEE
Q 008005 236 SCLFHNTSDSDFSLYSDHQCGRNRI--PSQ--TLQILEAHSDEVWFLQFSHD-----------GKYLASSSKDQSAIIWE 300 (581)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~--~~~~l~~h~~~V~~l~~s~~-----------g~~lasgs~dg~i~iwd 300 (581)
.|.|....+....+|.||..-.|.. +++ ....+--|...||.+.--|. ...++|++.|++|++|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 3555555554445566665433322 111 23344469999999886651 12588999999999999
Q ss_pred cccCC--ee-----------e---------------------EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 301 VKEDG--QV-----------S---------------------LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 301 ~~~~~--~~-----------~---------------------~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
+.... .. + .....-+....+.+++.+|+|++||+|..-|+++||++
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 87411 10 0 00001123457999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCC-CCeEEeeccCccccEEEEEEeeCC--CEEEEEE
Q 008005 347 NSGECLHVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG--KRIISIC 420 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~ 420 (581)
..-+....+..|...|.|+.|+. ..+.|++++.|..|.+||.. ...+......|...|+++.|...| ..+++++
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 99998899999999999999985 35679999999999999995 455666677788899999999887 7889999
Q ss_pred cCCeEEEEECCCCe--ee-----EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc-eeEEEe
Q 008005 421 REAAILLLDREANF--ER-----WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-RFVIRS 492 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~-----~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~ 492 (581)
.|..|.+--..... .. .......+..++..|..+++++++.|..|+|||+.++ +.++.|++.... ...|..
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEE
Confidence 99887654333211 11 1233556889999999999999999999999999998 888888876654 344544
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.. .|.|.||++.+.|.++.++|..+|+++....||...|+++.|.+|. +.|++++.||.|.||.+..
T Consensus 648 ~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 IL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 44 8999999999999999999999999999999999999999999999 7999999999999999864
No 85
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.4e-26 Score=230.60 Aligned_cols=214 Identities=20% Similarity=0.301 Sum_probs=176.0
Q ss_pred eecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCe----eeEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCC
Q 008005 266 QILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg 339 (581)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+++. ......+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 889999999999999999975421 13456788999999999999975 6899999999
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc-ccEEEEEEeeCCCEEEE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIIS 418 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~ 418 (581)
+|+|||+.+++.+..+..|...|.+++|+|++..|++++.|+.|++||++++........|. ..+..+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999998776654444443 33556788888888877
Q ss_pred EE----cCCeEEEEECCCCe--eeEE--ecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEE
Q 008005 419 IC----REAAILLLDREANF--ERWI--EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRY 480 (581)
Q Consensus 419 ~~----~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~ 480 (581)
++ .|+.|++||+++.. .... .....+....|++++++|++++. |+.|++||+.++ .++...
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~ 298 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCS 298 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEe
Confidence 65 47899999998754 2222 23344666789999999999885 999999999987 444443
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.9e-28 Score=208.97 Aligned_cols=252 Identities=19% Similarity=0.323 Sum_probs=216.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...-+.+++||++.||+...+.+...-|+++.|-+.+|||.-++..+ +.+ .|..-|.+++|+.|.++|++|+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---hsf-~hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---HSF-EHKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh---hhh-hhhheeeeEEecccchhhhccchHHH
Confidence 34458899999999999999999999999999999999999887543 443 48888999999999999999999999
Q ss_pred EEEEEcCCCc-EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 341 IRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 341 i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
++|||++..+ +...+.+|.+.|..+.|....+.|++.+.|++|++||.+++.......... +|+++.++++|+++.+
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTi- 201 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTI- 201 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEE-
Confidence 9999998754 567788999999999999999999999999999999999887766655543 8999999999976655
Q ss_pred EcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE-eccccceeEEEeeecCC
Q 008005 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGF 497 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 497 (581)
...+.|.+||..+-. .+.......|.+..++|+...+++|+.|..++.||..++ ..+..+ ++|.+++. ++.++|
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVh---cVrFSP 277 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVH---CVRFSP 277 (334)
T ss_pred ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC-ceeeecccCCCCceE---EEEECC
Confidence 466789999998866 666777888999999999999999999999999999998 444444 88888844 455599
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
+|...++||+||+|++|....++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999997766543
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.2e-26 Score=232.48 Aligned_cols=267 Identities=21% Similarity=0.367 Sum_probs=223.0
Q ss_pred ccCCCCCceeeccCCCCcccccccceee-cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
....+..+.+|+ ..+...+.. +.||.+.|++++|..-+.+|++|+.|.+++|||..++ .+.+.+.+|.+
T Consensus 223 ~~s~~~tl~~~~-------~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~s 292 (537)
T KOG0274|consen 223 SGSDDSTLHLWD-------LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTS 292 (537)
T ss_pred ecCCCceeEEee-------cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCc
Confidence 334444445554 334455666 9999999999999887889999999999999999887 67899999999
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 398 (581)
.|.++... +.++++|+.|.+|++|++.++.++..+.+|..+|.++... +..+++|+.|++|++||+.+.++.....
T Consensus 293 tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 293 SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 99999875 4578889999999999999999999999999999999986 8899999999999999999999888888
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC-e--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 399 QKTLRISDMAITDDGKRIISICREAAILLLDREAN-F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
.|..+|.++.+.+. ..+++|+.|++|++||+++. . ..+..|...+..+.+ .+++|++++.|+.|++||..++ .
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~ 444 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG-E 444 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC-c
Confidence 89999999988765 89999999999999999999 4 444455555644444 6789999999999999999998 7
Q ss_pred eeEEEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC
Q 008005 476 LVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS 529 (581)
Q Consensus 476 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 529 (581)
....+.+ |...+..+ ... ...+++++.||.+++||+.++++...+-.+.
T Consensus 445 ~~~~~~~~~~~~v~~l---~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 445 CLRTLEGRHVGGVSAL---ALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred eeeeeccCCcccEEEe---ecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 8888887 44443332 212 4688999999999999999999988774443
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=230.27 Aligned_cols=277 Identities=17% Similarity=0.292 Sum_probs=233.9
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCe---eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC--cEEEEEe
Q 008005 282 HDGKYLASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYE 356 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~ 356 (581)
|+++||+|||.||.|++|++..... -.....+..|.+.|+.++...+++.|++++.|-+|++|+...+ -|..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 4677899999999999999875432 1235678889999999999999999999999999999999887 6788899
Q ss_pred cCCCeEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCeE-----------EeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 357 KTGVGLISCGW-FLDGGGIFAGMTDKSICLWDLDGREL-----------ESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 357 ~~~~~v~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
.|...|.|+++ .++...+++|+-|+.|.+||++++.. ......+...|.+++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 78888999999999999999986522 1111144558999999999999999999999
Q ss_pred EEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE
Q 008005 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
+++||.++.. ....+|...|..+..++||+.++++++||+|++||+... +.+.++..|...++.+.+ +++-.++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~---~~sf~~v 270 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQS---SPSFTHV 270 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEee---CCCcceE
Confidence 9999999987 677799999999999999999999999999999999987 888999999998776655 6788899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
++|+.||.|+.=|+.+......+-....+|..+..+.+. .-+-+++.|+.|+-|...-.-
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc-CCceeeeccccceecCCcccc
Confidence 999999999999998854444444456778888877555 334677889999999886433
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.5e-25 Score=222.22 Aligned_cols=313 Identities=15% Similarity=0.224 Sum_probs=249.3
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCe-EEEeeCCC
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQEE 339 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~dg 339 (581)
..+.+.+++++.+.|+++.-+|-=..+|.|..+|+|.|+++..+ +.+..++...+.|+.++|..||.. +++|+..|
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEeccCCCeeEEeccCCc
Confidence 56679999999999999999999899999999999999999987 455667655699999999999975 56666779
Q ss_pred cEEEEEcCCCcEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC--C--eEEeeccCccccEEEEEEe-eCC
Q 008005 340 AIRRWDVNSGECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--R--ELESWKGQKTLRISDMAIT-DDG 413 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~--~~~~~~~~~~~~i~~i~~~-~~~ 413 (581)
.+.+||++..+.+.... .|.+.+....|.|....+++++.|+.+++|=.++ + .+......|..+..++.|. .+|
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 99999999988877666 7778999999999999999999999988885542 2 3455566777778888877 566
Q ss_pred CEEEEEEcCCeEEEEEC---------------------------------------------------------------
Q 008005 414 KRIISICREAAILLLDR--------------------------------------------------------------- 430 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~--------------------------------------------------------------- 430 (581)
..+.+++.|++++.+++
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 67777777665555443
Q ss_pred --CCCe--eeEEecC------CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE---eccccceeEEEeeecCC
Q 008005 431 --EANF--ERWIEEE------EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY---KGHKRARFVIRSCFGGF 497 (581)
Q Consensus 431 --~~~~--~~~~~~~------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~ 497 (581)
++.. .....+. ..+++++.++.|++.+.|+..|.|.+|++.++ .....| ..|...+..+.+ ..
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-i~r~sf~~~~ah~~~V~gla~---D~ 503 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-IHRKSFGDSPAHKGEVTGLAV---DG 503 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-eeecccccCccccCceeEEEe---cC
Confidence 2222 1111222 56889999999999999999999999999997 556666 467776555443 55
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-----------------------------------------eEEEeccCCCCEEEEE
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGE-----------------------------------------LVLALAGHSGSVNCVS 536 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~-----------------------------------------~~~~~~~h~~~v~~l~ 536 (581)
-++.+++++.+|.+.+||..... .++.+.+|.+.|++++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 67789999999999999976552 2334568999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCccccccc----cCCCceEEecCCCC
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQINMKHR----DQSNGIVHHCNGRI 581 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~~~~~G~~ 581 (581)
||||| ++|++++.|++|++||+.++.+... .....+.++|||.+
T Consensus 584 FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 584 FSPDG-RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred eCCCC-cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 99999 7999999999999999999988753 44778889999864
No 90
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=203.40 Aligned_cols=296 Identities=21% Similarity=0.372 Sum_probs=220.4
Q ss_pred cccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
.+|.+...++.... -.|+.|++.|.+||+|+.||.|.|||+.+. ...+.+.+|..+|++++||+||+.|+|++.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 44555556665332 789999999999999999999999999765 4667889999999999999999999999999
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeeccCcc----ccEEEEEEeeCC
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKT----LRISDMAITDDG 413 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----~~i~~i~~~~~~ 413 (581)
..|.+||+..|.+++.+.. ..+|+.+.|+|-. +..++.-.+..-.+.++............. ....+..|.+.|
T Consensus 87 ~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 9999999999999888854 5689999999943 344444444445555554322222221111 122334688999
Q ss_pred CEEEEEEcCCeEEEEECCCCee--eE-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC--------ceeEEEec
Q 008005 414 KRIISICREAAILLLDREANFE--RW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--------KLVSRYKG 482 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~ 482 (581)
+++++|...|.+.+||..+... .+ +.....|..+.++..|++|+..+.|..|+.|++..-. .+..++..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 9999999999999999998771 12 2223678899999999999999999999999987311 11111111
Q ss_pred cccceeEEEeeecCCCCcEEEEEeC-CCcEEEEeCCCCceEEEeccCC-CCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
--+. .....|.++.+|.|+++|+. -..+|||....|.+++.+.|.. .....+.|+|-.+ .+++. ..|.|+||...
T Consensus 246 vVNk-~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 246 VVNK-LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWAVV 322 (405)
T ss_pred HHhh-hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee-eeeec-cCCceEEEEee
Confidence 1111 11223344779999988775 4489999999999999999887 5678999999884 66666 77999999986
Q ss_pred ccc
Q 008005 561 QIN 563 (581)
Q Consensus 561 ~~~ 563 (581)
...
T Consensus 323 ~~e 325 (405)
T KOG1273|consen 323 QVE 325 (405)
T ss_pred ccc
Confidence 544
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.8e-25 Score=197.29 Aligned_cols=270 Identities=20% Similarity=0.274 Sum_probs=219.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
-.+.|..+.|+|.+..|+.++.||++++|++... .. ...-.|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 4678999999999999999999999999999865 22 22335899999999986 5689999999999999999887
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.. .+..|..++.|+.+++....+++|+.|++|++||.+........... ..|.++... ++.|++|+.+..+.+||+
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 54 45678899999999998899999999999999999864433333322 267776654 779999999999999999
Q ss_pred CCCeee----EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEeccc------cceeEEEeeecCC
Q 008005 431 EANFER----WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHK------RARFVIRSCFGGF 497 (581)
Q Consensus 431 ~~~~~~----~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~------~~~~~i~~~~~~~ 497 (581)
++.... ....+-.+.++++-|++.=+++++-+|.|.+=.++... .....|+.|. ...+.+....++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 987632 23445668999999988889999999999886665531 1223344443 3456677777788
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
-...++||+.||.|.+||..+.+.+..+......|.+++|+.+| ..||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 88899999999999999999999999998888889999999999 68888874
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-26 Score=223.33 Aligned_cols=278 Identities=20% Similarity=0.270 Sum_probs=229.5
Q ss_pred HHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC
Q 008005 225 LVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED 304 (581)
Q Consensus 225 l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~ 304 (581)
.....++|.. ...+.......+.+|+...+. .......+.+.|+++.|+++|.+||+|..+|.|.|||..+.
T Consensus 178 fY~nlldWss-~n~laValg~~vylW~~~s~~-------v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 178 FYLNLLDWSS-ANVLAVALGQSVYLWSASSGS-------VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred HhhhHhhccc-CCeEEEEecceEEEEecCCCc-------eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 3344566663 334455555577788655443 33344445899999999999999999999999999999765
Q ss_pred CeeeEEEEecC-CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 305 GQVSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 305 ~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
+....+.+ |...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.
T Consensus 250 ---k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 250 ---KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred ---cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence 44466777 99999999998 66899999999999999998776554 8889999999999999999999999999
Q ss_pred EEEEeCCCCeEEeeccCccccEEEEEEeeC-CCEEEEEE--cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEE
Q 008005 383 ICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
+.|||............|...|.+++|+|- ...||+|+ .|+.|++||..++. .........|.++.|++..+-|++
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 999999877777777778889999999995 45677664 69999999999888 677788899999999999887777
Q ss_pred E--eeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 459 N--LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 459 ~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+ ..++.|.||+..+. +.+..+.+|...+. ...++|+|..|++|+.|.++++|++-..
T Consensus 405 thG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl---~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-KLVAELLGHTSRVL---YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEecccc-ceeeeecCCcceeE---EEEECCCCCEEEEecccCcEEeccccCC
Confidence 5 44778999999986 88899999998743 3444999999999999999999998664
No 93
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7e-25 Score=224.27 Aligned_cols=242 Identities=11% Similarity=0.063 Sum_probs=186.5
Q ss_pred eeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCe--------EEeeccCccccEE
Q 008005 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE--------LESWKGQKTLRIS 405 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~ 405 (581)
|+.++.|++|+......+..+.+|...|.+++|+|+ +..|++|+.||+|++||+.... .......|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 7899999999999999997431 1123345667899
Q ss_pred EEEEeeCCCEE-EEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 406 DMAITDDGKRI-ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 406 ~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
+++|+|++..+ ++++.|++|++||++++. .....+...|.+++|+|+|.+|++++.|+.|++||++++ ..+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecc
Confidence 99999998765 688999999999999887 333456678999999999999999999999999999997 777888888
Q ss_pred ccceeEE--EeeecCCCCcEEEEEeCCC----cEEEEeCCC-CceEEEecc--CCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 484 KRARFVI--RSCFGGFEQAFIASGSEDS----QVYIWHRYT-GELVLALAG--HSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 484 ~~~~~~i--~~~~~~~~~~~l~sgs~dg----~I~iwd~~~-~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
.+..... ....+++++.+|++++.|+ .|+|||+++ ++++..+.. +.+.+......+++ .++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECCCeE
Confidence 8754322 2222357888999888774 799999985 556655433 33333333334446 789999999999
Q ss_pred EEecCCccccc------cccCCCceEEecC
Q 008005 555 RIWGLDQINMK------HRDQSNGIVHHCN 578 (581)
Q Consensus 555 ~iW~~~~~~~~------~~~~~~~~~~~~~ 578 (581)
++|++..+.+. ...+..++.+.|.
T Consensus 288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEEccCCcEEeecccccCCCccceEEccc
Confidence 99999876432 1233456666664
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.4e-26 Score=214.22 Aligned_cols=252 Identities=18% Similarity=0.374 Sum_probs=200.7
Q ss_pred cccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCee-------eEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCc
Q 008005 270 AHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQV-------SLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~ 340 (581)
.|.+.|+.+.+-|.. .++|+++..+.|.|||..+.... .+..++.+|...-++++|++. .-+|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 599999999999955 47778889999999998753322 233478899998889999984 457999999999
Q ss_pred EEEEEcCCCc-------EEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC--CeEEeeccCccccEEEEEEe
Q 008005 341 IRRWDVNSGE-------CLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG--RELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 341 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~i~~~ 410 (581)
|++||+.... ....+.+|...|..++|++ +...|.+++.|+.+.+||+++ .+.......|.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~--------- 272 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS--------- 272 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC---------
Confidence 9999996532 3567889999999999998 566788899999999999984 33333333333
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008005 411 DDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
..+.|++|+| ++..||+|+.|++|.+||+++...++..+.+|...++.
T Consensus 273 -------------------------------~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 273 -------------------------------AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred -------------------------------CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 4455555555 45567788889999999999988899999999998766
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCC--------------ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
+.+. +.....||+++.|+.+.|||+..- +++..-.||...|+.+.|+|+.+..|+|+++|+.+.
T Consensus 322 V~WS--Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 322 VEWS--PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEeC--CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 5542 335678999999999999997542 345777899999999999999999999999999999
Q ss_pred EecCCccc
Q 008005 556 IWGLDQIN 563 (581)
Q Consensus 556 iW~~~~~~ 563 (581)
||.+...-
T Consensus 400 IW~~s~~i 407 (422)
T KOG0264|consen 400 IWQMAENI 407 (422)
T ss_pred Eeeccccc
Confidence 99997543
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=208.22 Aligned_cols=261 Identities=13% Similarity=0.232 Sum_probs=220.4
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE--------ecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY--------EKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
+....+-|..|+|||++|++|+.||.|.|||..+|+..+.+ -.++.+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34556889999999999999999999999999999865433 3467899999999999999999999999999
Q ss_pred eCCCCeEE-eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCC
Q 008005 387 DLDGRELE-SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 387 d~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
.+.++.+. .+...|...|+++.|+.|+..+++++.|.++++--+++++ ..+.+|...|+...|.+||.++++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 99887654 4555788899999999999999999999999999999988 67789999999999999999999999999
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC---CCCEEEEEEcCC
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH---SGSVNCVSWNPA 540 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~ 540 (581)
+|++|+..+. .++.+|+.......+......+.+...++.+...++|+|.++ .|+.+..+..- .+...+.+.+|.
T Consensus 371 tvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 371 TVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred cEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 9999999987 777777766554444445555667778888999999999997 57888877542 355667789999
Q ss_pred CCcEEEEEECCCcEEEecCCccccccccC-----CCceEEecC
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHCN 578 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~~ 578 (581)
| .++.+.+.|+.++.+.+..+++.+... .-|+.++|-
T Consensus 449 G-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 449 G-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred C-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 9 699999999999999999998875433 566666664
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=199.35 Aligned_cols=289 Identities=20% Similarity=0.280 Sum_probs=211.4
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee--eEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCcE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAI 341 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i 341 (581)
+.+|++|.+.|++++|+.||++|||++.|++|+||++..-... .+++. .-.-+--+.+.|+||-+-++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 5678999999999999999999999999999999998742110 01110 01112357889999887655544 45579
Q ss_pred EEEEcCC---CcEEE---------EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEE
Q 008005 342 RRWDVNS---GECLH---------VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 342 ~vwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~ 409 (581)
++|.+.. |.... .-+.|...+..+-...++.+|.+++.|..|.+|+++++.+...... ...-...++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn-q~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN-QSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc-cccccceee
Confidence 9997643 22111 1123455666777777889999999999999999996555544433 346778899
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe----------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC------C
Q 008005 410 TDDGKRIISICREAAILLLDREANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES------D 473 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------~ 473 (581)
+|+|+++++++-...|++|..--.+ ....+|...|..++|+++...+++.+.||.+++||++- .
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999864222 44568899999999999999999999999999999853 1
Q ss_pred CceeEEEe--ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 474 PKLVSRYK--GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 474 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
+..++... .|......++... +|+|+.|+.. ....+.+|..++|+....+. .|...|.+++|+++| ++++|+|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~l-sP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atcG- 392 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLEL-SPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATCG- 392 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEe-CCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeeec-
Confidence 12233221 1222222234333 8899887765 44579999999988776664 589999999999999 7999887
Q ss_pred CCcEEEecC
Q 008005 551 DRTIRIWGL 559 (581)
Q Consensus 551 Dg~I~iW~~ 559 (581)
|..+++..-
T Consensus 393 dr~vrv~~n 401 (420)
T KOG2096|consen 393 DRYVRVIRN 401 (420)
T ss_pred ceeeeeecC
Confidence 567887663
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-25 Score=192.82 Aligned_cols=264 Identities=16% Similarity=0.267 Sum_probs=217.8
Q ss_pred EecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
.+++|..+++.+.++.+|.+|++|+.|.++.||--.+|+.+.++.+|.+.|+|+...-+.+++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCCCe---------eeEEecCCceEEEEECCCCCEEE
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF---------ERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
+......... +|..+.|+++|++++.... .+.|.++|++... .....+...++.+-|.|-+.+|+
T Consensus 85 k~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 7766555443 8999999999998887754 4689999988422 45556778999999999999999
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
+|..+|.|..||++++...+.....|... |.-...+++..++++++.|.+-++||..+-+++.++.. ..+|++.++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~---Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aai 239 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSK---INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAI 239 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccc---cccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceec
Confidence 99999999999999987888887888776 44444599999999999999999999999999998874 679999999
Q ss_pred cCCCCcEEEEEECCC-cEEEecCCccccc-----------------cccCCCceEEecCCC
Q 008005 538 NPANLHMLASASDDR-TIRIWGLDQINMK-----------------HRDQSNGIVHHCNGR 580 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg-~I~iW~~~~~~~~-----------------~~~~~~~~~~~~~G~ 580 (581)
+|...+++.-|+.+- -|.-=+.+.++.. |-.+.|.++++|+|+
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 998743444444331 1222222222211 123379999999997
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.5e-25 Score=198.93 Aligned_cols=261 Identities=17% Similarity=0.266 Sum_probs=202.1
Q ss_pred cCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC-CcEE-EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 314 SGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS-GECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 314 ~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
....+.|.+++||| ...++++++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 555667899999999999987 3332 34457789999999999999999999999999999999
Q ss_pred CeEEeeccCccccEEEEEEeeCCC--EEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 391 RELESWKGQKTLRISDMAITDDGK--RIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
++..... .|..+|..+.|-+... .|++|+.|.+|++||.+... .......+.+.++.. ....++++..+..|.+
T Consensus 104 ~Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 GQVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred CCeeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEE
Confidence 8766554 4556999999988766 89999999999999999877 555666777777765 3457888999999999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--ceEEEeccCCC---------CEEEEE
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLALAGHSG---------SVNCVS 536 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~---------~v~~l~ 536 (581)
|+++++....+..... ..+.++++....+....+.|+-+|.+.|..+..+ +.-..++.|.. .|++|+
T Consensus 181 ynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9998875555544433 2344555554566666799999999999998876 44456777752 578899
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecCCC
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
|+|.. ..|+|+|.||++.+||-+....+.. .+.....|+.+|.
T Consensus 259 FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 259 FHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred eeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 99987 6999999999999999875443222 2244445555654
No 99
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=7.8e-26 Score=219.45 Aligned_cols=284 Identities=22% Similarity=0.364 Sum_probs=223.2
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEEcccCCeee----EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 278 LQFSH---DGKYLASSSKDQSAIIWEVKEDGQVS----LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 278 l~~s~---~g~~lasgs~dg~i~iwd~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
..|++ ..+.||.+..||.|.++|..... +. .......|.+.|..+.|.|....|++++.|.++++||+.+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 44554 34589999999999999986421 11 124567899999999999977789999999999999999999
Q ss_pred EEEE--EecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEE--------------e-------------eccCc
Q 008005 351 CLHV--YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELE--------------S-------------WKGQK 400 (581)
Q Consensus 351 ~~~~--~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~--------------~-------------~~~~~ 400 (581)
++.. +.+|...|.+++|.+.+ ..|++|+.||.|.|||++-.... . ....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8877 88999999999999954 56889999999999998532100 0 00012
Q ss_pred cccEEE---EEEeeCCCEEEEEEc-CCeEEEEECCCCeeeE----------Eec---CCceEEEEECCCCCEEEEEeeCC
Q 008005 401 TLRISD---MAITDDGKRIISICR-EAAILLLDREANFERW----------IEE---EEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 401 ~~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----------~~~---~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
...|.. +.+..|...|++++. |+.|++||++...... ..+ ...++++..+..|.+|++.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 223444 556678888998887 9999999999865211 112 34578888888899999999999
Q ss_pred cEEEEEecCCC-ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCCCCEEEEEEcCCC
Q 008005 464 EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 464 ~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~~p~~ 541 (581)
.|++|++.+.. .++..+.++....+.+..+. +|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999998742 45667777777777776666 8999999999999999999998765 456788999999999999876
Q ss_pred CcEEEEEECCCcEEEecCCccc
Q 008005 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
-.-++||++|.+++||++..+-
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCCceeeccCcceEEEeccCch
Confidence 5578999999999999996543
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.6e-24 Score=209.23 Aligned_cols=276 Identities=12% Similarity=0.118 Sum_probs=203.7
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
+..+++++.|+.+++||..++. ....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+. .+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~---~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE---VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc---eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-Cc
Confidence 3578899999999999998663 445555554 36789999999876 566788999999999998877766543 35
Q ss_pred EEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC-eEEEEECCCCee-eEEe
Q 008005 363 ISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANFE-RWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~~ 439 (581)
..++|+|+++.++++ +.++.|++||+.+.......... ..+.+++++|+++.++++..++ .+.+||..+... ....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 678899999987665 46899999999876654433322 2578899999999999888765 567789887662 2233
Q ss_pred cCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccc-----cceeEEEeeecCCCCcEEEE-EeCCCcEE
Q 008005 440 EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHK-----RARFVIRSCFGGFEQAFIAS-GSEDSQVY 512 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s-gs~dg~I~ 512 (581)
....+.+++|+|+++++++++ .++.|++||+.+. +.+..+..+. ......... ++++++++++ .+.++.|.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEE
Confidence 445567899999999886655 5899999999987 5555443221 111112223 3888887554 45567899
Q ss_pred EEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEE-ECCCcEEEecCCccccccccC
Q 008005 513 IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 513 iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+||..+++.+..+. +...+.+++|+|++ ..|+++ +.+|.|++||+++++......
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988876553 44579999999999 566665 579999999999988765544
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=205.87 Aligned_cols=251 Identities=19% Similarity=0.259 Sum_probs=211.1
Q ss_pred ccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
...+.+.+++||...|+.+.|+|+...+++++.|..|+||..... ........|..+|+.+..+|.|.||++++.||
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc---cCccccccccccceeeeeccCCcEEEEecCCc
Confidence 345778899999999999999999999999999999999998755 34456778999999999999999999999999
Q ss_pred cEEEEEcCCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 340 AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
+..+.|+++|.++..... ..-.+++.+|+|||..|.+|..||.|++||+..+.....+..|.++|..++|+.+|-+++
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence 999999999998876655 345689999999999999999999999999988877777778999999999999999999
Q ss_pred EEEcCCeEEEEECCCCe-ee--EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-CceeEEEeccccceeEEEee
Q 008005 418 SICREAAILLLDREANF-ER--WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~-~~--~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~i~~~ 493 (581)
+++.|+.|++||++... .. .......+.++.|++.|.+|+.++.+=.|++++-.+. -..+..+..|.+.. ..+
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---t~v 482 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS---TGV 482 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc---cee
Confidence 99999999999999876 22 2233446999999999999999977777777764332 13455555666442 334
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeC
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.+....+++++++.|..++++.+
T Consensus 483 ~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecccceEEeeccchhheEEeec
Confidence 44778899999999999888754
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.4e-26 Score=213.06 Aligned_cols=282 Identities=16% Similarity=0.223 Sum_probs=233.2
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC--CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
.|..-|.++++|...+.+.||+. |.|+|||+...+....+..+.. ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58899999999999999999974 6699999975443333333332 45679999999999999999999999999998
Q ss_pred CCcEEE--EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 348 SGECLH--VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 348 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
...... .+....-....++.+||.+..+++..||.|.|||+....+......|...+.||.+++||..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 765433 233334567788999999999999999999999999999988888888899999999999999999999999
Q ss_pred EEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE
Q 008005 426 LLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 426 ~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
+.||++.+. .........|.++..+|.+.++++|..++.+.+...... ....+..|... ++.. -|.+.|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheSc--VLSl-KFa~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHESC--VLSL-KFAYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeecccccE--EEEE-EecccCceeee
Confidence 999999887 444566778999999999999999999999988877653 23334444443 3333 33788999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.+.|+.+..|...-|..+...+. .+.|.+...+-|+ ++|+|||.|..-.+|.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccc-cCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 99999999999988988887763 6789999999999 79999999998888865
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.3e-26 Score=213.12 Aligned_cols=245 Identities=16% Similarity=0.250 Sum_probs=202.8
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~ 342 (581)
...++.-..+.|+++.|-.||++||.|+..|.|+|||..+. ..+..+.+|+.+|..+.|+|+ +..+++|+.|+.++
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 34556667889999999999999999999999999996542 456778999999999999995 56678888899999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
+||+.+......+.+|.+.|.|.+|+|- +..+++|+.||.|++||++..........|..+|..+.+-|.|..+++++
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg- 215 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG- 215 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-
Confidence 9999999887789999999999999995 45789999999999999987644444455666999999999999888875
Q ss_pred CCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 422 EAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 422 dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
.+.|++||+.++. .....|...|+|+.+..++..|++++-|+.+++||+.+. +.+..+.-.. + +-.+..+|+
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~~~-p---vLsiavs~d 290 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKYPG-P---VLSIAVSPD 290 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeeccc-c---eeeEEecCC
Confidence 4689999999655 334459999999999999999999999999999997665 6666665433 2 233444889
Q ss_pred CcEEEEEeCCCcEEEEeCC
Q 008005 499 QAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~ 517 (581)
+..++.|..||.+.+-+..
T Consensus 291 d~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CceEEEecccceeeeehhh
Confidence 9999999999988776543
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-26 Score=196.41 Aligned_cols=247 Identities=17% Similarity=0.282 Sum_probs=203.7
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEEEE
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vw 344 (581)
+-..|.+.|..+...--|+.|||++.|++|+|+.+.++++...+.++.+|.++|+.++|.. -|.+||+|++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3457999999999988999999999999999999998887778899999999999999976 89999999999999999
Q ss_pred EcCCCcE--EEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCC---eEEeeccCccccEEEEEEeeC---C-
Q 008005 345 DVNSGEC--LHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDD---G- 413 (581)
Q Consensus 345 d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~i~~~~~---~- 413 (581)
.-++|+- ......|...|++++|.|. |-.|++++.||.|.+.+.+.. ........|...|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9888753 3455688999999999985 557899999999999998643 334455667778999999986 4
Q ss_pred ----------CEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCC----CEEEEEeeCCcEEEEEecCCCc
Q 008005 414 ----------KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 414 ----------~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
+.|++|+.|..|++|+..... ..+..|.+.|..++|.|.- .++++++.||++.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 579999999999999999865 4467899999999999953 5799999999999998874322
Q ss_pred e--eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 476 L--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 476 ~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
. ...+.......+ ...|+..|++|+.++.|+.|.+|.-
T Consensus 246 ~wk~tll~~f~~~~w---~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVW---RVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceE---EEEEeccccEEEEecCCcEEEEEEe
Confidence 2 222333333333 3344889999999999999999973
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-25 Score=207.68 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=227.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCc
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~ 350 (581)
.+.|+++.|+|....|++|+.|++++||.++.. .-..++.+.--..+|.+..|.|+|. .+++++.......||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999999999999999999999999743 2245566666678999999999998 89999999999999999887
Q ss_pred EEEEE--ecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 351 CLHVY--EKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 351 ~~~~~--~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
..+.- .++ ...+.....++++++|+..+..|.|.+....++++....... +.|.+++|+.+++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 54332 222 334566777899999999999999999999888776655544 37999999999999999999999999
Q ss_pred EECCCCe-eeEEecCC--ceEEEEECCCCCEEEEEeeCCcEEEEEecC-----CCceeEEEeccccceeEEEeeecCCCC
Q 008005 428 LDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIES-----DPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 428 ~d~~~~~-~~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
||++... .......+ .-++++.++++.+|++|+..|.|.|||..+ .++++..+..- .+.|....++++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL---tt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL---TTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh---heeeeeeeeCcch
Confidence 9999987 33333333 346788899999999999999999999654 33455544433 3456677779999
Q ss_pred cEEEEEeC--CCcEEEEeCCCCceEEEeccC---CCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 500 AFIASGSE--DSQVYIWHRYTGELVLALAGH---SGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 500 ~~l~sgs~--dg~I~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++||.+|. +..+++-.+.+......++.. -+.|+|++|+|.+ .++|.|..+|.|.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 99888776 568999998887776666543 3568999999998 599999999999999875
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.7e-25 Score=229.09 Aligned_cols=255 Identities=20% Similarity=0.291 Sum_probs=209.2
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEccc---------------CCeeeEEEEecCCCCCEEEEEeC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWS 326 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~V~~l~~s 326 (581)
.+.+.+...|.+.|+|+.|+|||++||+||.|+.|.||.... -..++....+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 445677788999999999999999999999999999999872 02366788899999999999999
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC------c
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ------K 400 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------~ 400 (581)
|++.+|++++.|++|.|||..+.+.+..+.+|...|-.+.|.|-|++|++-+.|++|++|++....+...... .
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999765333322221 1
Q ss_pred cccEEEEEEeeCCCEEEEEEc----CCeEEEEECCCCe--eeEEecCCceEEEEECCC-----CC------------EEE
Q 008005 401 TLRISDMAITDDGKRIISICR----EAAILLLDREANF--ERWIEEEEVITSFSLSKD-----NK------------YLL 457 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~-----~~------------~l~ 457 (581)
...+..+.|+|||.+|++.-. -.++.|.+..+.. ..+.+|..++.++.|+|. .+ .++
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 235788999999999998743 3468888876665 778899999999999981 11 678
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+|+.|++|.||..... +++... |.-....+.-..|+|+|..|+++|.||+|.++..+..
T Consensus 299 vgSqDrSlSVW~T~~~-RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALP-RPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCccEEEEecCCC-Cchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 8999999999998665 433322 2222223444556999999999999999999987654
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=207.95 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=219.4
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE----E-------------E-ecCCCeEEEEEEecCCC
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH----V-------------Y-EKTGVGLISCGWFLDGG 372 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~~ 372 (581)
.....|.-+|.+++++|++++.++++.+|+|.-|++.+|+... . - +.|...+.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456688999999999999999999999999999998886431 1 0 25677899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEEC
Q 008005 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS 450 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s 450 (581)
+|++|+.|..|.||+.++.+.......|...|.+++|-.....+++++.|..|++|++.... ..+++|...|.++...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999988888888888899999999999999999999999999999877 7788999999999999
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cC-
Q 008005 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GH- 528 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h- 528 (581)
.-++.+-+|+.|.++++|++.. .....|.++.+.. .++. --+...+++|+.||.|.+|++.+.+++.+.. +|
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~si---dcv~-~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSI---DCVA-FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred cccceEEeccccceeEEEeccc--cceeeeeCCCCCe---eeEE-EecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 8899999999999999999965 4445566776553 3333 2356789999999999999999988887654 22
Q ss_pred ----------CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc----ccccccC----CCceEEecCCC
Q 008005 529 ----------SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI----NMKHRDQ----SNGIVHHCNGR 580 (581)
Q Consensus 529 ----------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~----~~~~~~~----~~~~~~~~~G~ 580 (581)
...|++++..|.. .++++|+.+|.|++|.+.++ ++....+ .+.+.|+.+|+
T Consensus 370 v~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred ccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 1278999999987 79999999999999999877 3333333 56677777776
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.7e-26 Score=210.90 Aligned_cols=243 Identities=18% Similarity=0.301 Sum_probs=206.8
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
..+.+|.|..+.|+.+.|.++++.+++++.|+.+++|++... ....++.+|++.|+++.|......+++|+.|.+|+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 367889999999999999999999999999999999999765 66789999999999999998777799999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
.||+....|.+++... ..+..++.. ...+++|..|+.|++||+++.........+. .|+++..++++..+.+++.|
T Consensus 287 ~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhhhhheecccccc-ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCC
Confidence 9999999888776433 344455544 5578899999999999999877776666665 89999999999999999999
Q ss_pred CeEEEEECCCCeeeEE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecC
Q 008005 423 AAILLLDREANFERWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
.++.+.|+++...... ......+.+.|||++.|+++|+.||.|+||++.++ ++...+....... .|.++.|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~-aI~s~~W~ 440 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNA-AITSLSWN 440 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCc-ceEEEEEc
Confidence 9999999999872221 22344889999999999999999999999999998 7777776655442 46667779
Q ss_pred CCCcEEEEEeCCCcEEEE
Q 008005 497 FEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iw 514 (581)
|.|..+++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.8e-25 Score=210.22 Aligned_cols=291 Identities=20% Similarity=0.304 Sum_probs=228.7
Q ss_pred ccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCe--EEEe
Q 008005 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ--LLTC 335 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~ 335 (581)
.++|..+...+.||++.|.||...|.|.+||+|+.||+|+||.+.++. ++.++. ..+.|.|++|+|.+.. ||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 567888888999999999999999999999999999999999999884 444443 3457999999996643 4443
Q ss_pred eCCCcEEEEEcCCC-------------------------------------cEEEEEecCCCeEEEEEEecCCCeEEEEe
Q 008005 336 GQEEAIRRWDVNSG-------------------------------------ECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 336 ~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
-.. .+.|-+..-| .-++..-.|...|..+.|+..|.+|++..
T Consensus 462 ~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 322 2333332111 01223345677899999999999999876
Q ss_pred CC---CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCC
Q 008005 379 TD---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 379 ~d---g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~ 453 (581)
.+ ..|.|+++.......-+....+.|.++.|+|...++++++ ...|++||+.... .........|.+++++|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 64 4799999976555444444455899999999998888775 4689999998866 5556677789999999999
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC-------CC--ceEEE
Q 008005 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY-------TG--ELVLA 524 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~-------~~--~~~~~ 524 (581)
..|++++.|+.+..||+.-..++.+++..|... ++.+.+++.-.++++|+.||++.||.-. +. -++..
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 999999999999999999887899999988876 4455558888899999999999998622 11 24577
Q ss_pred eccCCCC----EEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 525 LAGHSGS----VNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 525 ~~~h~~~----v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+.+|... |..+.|||..+ +|+|++.||+|++|.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence 8888765 88999999996 899999999999993
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=218.35 Aligned_cols=326 Identities=18% Similarity=0.220 Sum_probs=249.7
Q ss_pred cccceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe
Q 008005 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~ 313 (581)
..+.+|.+..|+.+.+|....-. .......+..++.|.+.|..++...+|+.|+++|.|-+|++|+...++ ..+..++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~-~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDS-NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCceEEecCCCceEEEecccccc-CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 34468899999999999754321 112223588999999999999999999999999999999999998765 3467788
Q ss_pred cCCCCCEEEEEe-CCCCCeEEEeeCCCcEEEEEcCCCc--EEEEE--------e-cCCCeEEEEEEecCCCeEEEEeCCC
Q 008005 314 SGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGE--CLHVY--------E-KTGVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 314 ~~h~~~V~~l~~-sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~--------~-~~~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
..|.+.|.|+++ .++...+|+||.|+.|.+||++++. .+..+ . ++..+|++++.++.+..+++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 999999999999 7888999999999999999999873 22222 2 6778899999999999999999999
Q ss_pred cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEE
Q 008005 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
.+++||.++++.......|...|.++..++||+.++++++||+|++||+.... ..+..|...+.++..+|+-.++++|
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 99999999876655555788899999999999999999999999999999877 5677888889999999999999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEecc-----
Q 008005 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-------ELVLALAG----- 527 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~----- 527 (581)
+.|+.|..=|+++..+....++. ..++..+.. ..+.+-+.+++.|+.|+-|...-. .+......
T Consensus 274 ~rd~~i~~Tdl~n~~~~tlick~-daPv~~l~~---~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPAKSTLICKE-DAPVLKLHL---HEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred CCCCcEEecccCCchhheEeecC-CCchhhhhh---ccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcc
Confidence 99999999999986444443332 122111111 222333477888999999964321 11110000
Q ss_pred ------CC------CCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc
Q 008005 528 ------HS------GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 528 ------h~------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
|. .+|..-+.-.+. +.++|-...|.+.+||+-......
T Consensus 350 ~~~~~tp~~vi~Gg~ai~k~~mL~dk-RhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 350 CDLTNTPDSVIPGGAAIKKHAMLNDK-RHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccCCCceeccCchhhhhhhhhcCc-ceEeeecCCCCEEEEEeeeeeehh
Confidence 10 112222233344 689999999999999997665543
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=4.4e-25 Score=196.42 Aligned_cols=266 Identities=16% Similarity=0.208 Sum_probs=207.2
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC------------C------cEEEEEecCCCeEEEEEEecCCC
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS------------G------ECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
..+..|..++.+.+|+|||.++++|+.|..|+|.|++. + -.++++-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45678999999999999999999999999999999871 1 24677778999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEeec--cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee-----EEecCCceE
Q 008005 373 GIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDDGKRIISICREAAILLLDREANFER-----WIEEEEVIT 445 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~i~ 445 (581)
.|++|+.|++|++||+.....+.-. .....+|.++.|+|.|.++++|..-.++++||+++.+.. -..|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 9999999999999999643221111 122348999999999999999999999999999987732 235778899
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
++.+++.+++.++++.||.|++||--++ +++.++....+.. .+.+..+..+++|+.+.+.|..+++|.+.+++++..+
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999998776 6666665433333 3445555899999999999999999999999999988
Q ss_pred ccCC--C---CEEEEEEcCCCCcEEEEE-ECCCcEEEecCCcccccc------ccCCCceEEecCC
Q 008005 526 AGHS--G---SVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKH------RDQSNGIVHHCNG 579 (581)
Q Consensus 526 ~~h~--~---~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~------~~~~~~~~~~~~G 579 (581)
.|-. + --+...|+... .+++.- -..+.+.-||.++..-.. .....-++++|.+
T Consensus 344 tGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE 408 (430)
T ss_pred ecCCcccchhhhhhhhhcCcc-ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence 7631 1 12344577666 344433 345678889988765432 2334555666654
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.9e-24 Score=189.98 Aligned_cols=286 Identities=16% Similarity=0.266 Sum_probs=228.5
Q ss_pred cccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCee---------eE---EEEecCCCCCEEEEEeCC-CCCeEE
Q 008005 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV---------SL---KHRLSGHRKPVFTVSWSP-NDHQLL 333 (581)
Q Consensus 268 l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~---------~~---~~~~~~h~~~V~~l~~sp-~~~~l~ 333 (581)
...|.+.|+++.+.+ .|+|+++|+.||.|.+||++..... .+ ...-.+|.-.|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345899999999988 6889999999999999999754311 01 111246788899999999 667888
Q ss_pred EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecC---CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEe
Q 008005 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~ 410 (581)
+++.|.+++|||..+-+....|+. .+.|.+-+|+|- .-.+++|..|-.|++.|+.++........|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 999999999999999888777754 457888888883 3457778888899999999999999999999999999999
Q ss_pred eCCCE-EEEEEcCCeEEEEECCCCe-----------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 411 DDGKR-IISICREAAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 411 ~~~~~-l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|...+ |++|+.||.|++||++... .....|.+.+.+++|+.++.++++++.|..+++|+...
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 98775 6788999999999998642 11235678899999999999999999999999999988
Q ss_pred CCceeEEEecc--c---cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 473 DPKLVSRYKGH--K---RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 473 ~~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
+....+.+... . .....+. +.+...++---.++.+.++++-++..+..+..|-..|.+.++-|+- ....+
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~~t 352 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQCFT 352 (397)
T ss_pred CcccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch-hhhhc
Confidence 75544443211 1 1111122 2233444445566899999999999999999999999999999988 68899
Q ss_pred EECCCcEEEecC
Q 008005 548 ASDDRTIRIWGL 559 (581)
Q Consensus 548 ~s~Dg~I~iW~~ 559 (581)
++.|+.|..|-.
T Consensus 353 g~~d~ni~~w~p 364 (397)
T KOG4283|consen 353 GDMNGNIYMWSP 364 (397)
T ss_pred cccCCccccccc
Confidence 999999999988
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=8.3e-25 Score=207.18 Aligned_cols=272 Identities=21% Similarity=0.275 Sum_probs=202.3
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeee---------
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS--------- 308 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~--------- 308 (581)
++..+.|..+.+|+-.........++.++-. ....|.+++||+.|..|++.+....++|+|-......+
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~ 259 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR 259 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh
Confidence 4566777788888644333222223333333 34478999999999988888888889999976321111
Q ss_pred EEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCc-EEEEEe-----cCCCeEEEEEEecCCCeEEEEeCCC
Q 008005 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE-CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
-....+||...++|.+|+|+. ..++|++.||++++||+...+ ....++ +..-+++.|+|++|++.|++|+.||
T Consensus 260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 122357899999999999954 579999999999999998654 233333 2345789999999999999999999
Q ss_pred cEEEEeCCCC---eEEeeccCccc--cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE-----EecCCceEEEEECC
Q 008005 382 SICLWDLDGR---ELESWKGQKTL--RISDMAITDDGKRIISICREAAILLLDREANFERW-----IEEEEVITSFSLSK 451 (581)
Q Consensus 382 ~i~vwd~~~~---~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~i~~~~~sp 451 (581)
.|.+|+..+. ........|.. .|+++.|++||++|++-+.|+++++||+++..... +.....-+.++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 9999998542 23444455554 89999999999999999999999999999876222 23345567899999
Q ss_pred CCCEEEEEee------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 452 DNKYLLVNLI------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 452 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
+.+++++|+. .|.+.+||..+. ..+..+..... . +.-|.|+|.-+.|+.|+.||.++||-
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~a--S-vv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDISTA--S-VVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccce-eeEEEecCCCc--e-EEEEeecchhhheeeecCCCceEEEE
Confidence 9999999875 467999998876 55555554432 2 44455589888999999999999874
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.9e-24 Score=213.58 Aligned_cols=275 Identities=15% Similarity=0.228 Sum_probs=220.6
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
.+|+..-+.++|.|+|.+|++++.||.|++|+..... .....+..+...|.+++-. +.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 4799999999999999999999999999999986542 1112233377778877754 55999999999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEE
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 428 (581)
++.-..+.....++.+++++.+|++++.|+.|-.|++.++...........|..+|.++.|+|++++|++.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 88776777777899999999999999999999999999998777777777788899999999999999999999999999
Q ss_pred ECCCCeee-E---------EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 429 DREANFER-W---------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 429 d~~~~~~~-~---------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
|+.++... . ......+..++|+|++..+++...|+.|++|+..+. .....+........ +..+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEcCC
Confidence 99987611 1 112455778999999999999999999999999887 55555544333222 556777999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
|.|||+++.||.|.|||.++-+. ......|.+++|.|+.+ .+-.-..-|..
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~~ 294 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGTL 294 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeecccc
Confidence 99999999999999999987222 22346899999999984 44333333433
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.4e-24 Score=190.02 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=203.5
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
....|..+.|+|.+..|+++++||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 3577999999999999999999999999999887655555 6778999999986 5689999999999999999887666
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008005 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
...+ ...+.++.+++....+++|+.|++|++||.+... .........|.++.. .++.|++|+.+..+.+||+++..
T Consensus 90 igth-~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTH-DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccC-CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 5544 4589999999999999999999999999999755 344455557777776 57889999999999999999875
Q ss_pred ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCCC---------CEEEEEEcCCC
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSG---------SVNCVSWNPAN 541 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~---------~v~~l~~~p~~ 541 (581)
...+.. ...-.+.+++...-|++.-.++++-||.|.+=.++.. +....++.|.. +|++|+|+|-.
T Consensus 167 ~~~q~r--eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 167 EPFQRR--ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred chhhhc--cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 444222 2233455666666678888899999999988666554 34456777742 79999999987
Q ss_pred CcEEEEEECCCcEEEecCCccccccccC-----CCceEEecCCC
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHCNGR 580 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~~G~ 580 (581)
..++|||.||.|.+||+.+.+...... ...++++.||.
T Consensus 245 -~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 245 -GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred -ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 699999999999999998776543322 45566666664
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.9e-22 Score=190.78 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=218.4
Q ss_pred ceeeccccc-CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHS-DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~-~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
...+++.+. ..|.|++|.++|+ ++||..+|.|.||+.... ...+....|.+.|.+++...+|. |++|+.|..|.
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~ 311 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKII 311 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEeEeeecCCceEEEEEecCcc-EeecCccceEE
Confidence 344555544 6899999999997 789999999999999644 33344449999999999999886 45599999999
Q ss_pred EEEcCCCc----------------------------------------EEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 343 RWDVNSGE----------------------------------------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 343 vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
.||-.-.+ ......+|....+.++.+|+.+.+++++.|+.
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence 99832100 01112356678888999999999999999999
Q ss_pred EEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+++|+ + ....+......+..++.|+|.| .++.|+..|...+.|.++.. ........+++.+.|+|+|.+|++|+.
T Consensus 392 v~lW~-~--~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 392 VRLWN-D--HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred EEEcc-C--CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC
Confidence 99999 2 2223333334489999999999 99999999999999999976 333344889999999999999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC----------------------
Q 008005 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---------------------- 519 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---------------------- 519 (581)
|+.|++|.+..+.....+...+.+ ..|...-|++|++++.+-+-|-.|-.|.....
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999887677776666555 34556666888888888888888888842111
Q ss_pred -----------------------------------------ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 520 -----------------------------------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 520 -----------------------------------------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.....+.+|++.|++++|.-+. +.+++.+.|.+|..|+
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWR 624 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEE
Confidence 1123345788888888888777 5666666888888887
Q ss_pred C
Q 008005 559 L 559 (581)
Q Consensus 559 ~ 559 (581)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.9e-23 Score=204.89 Aligned_cols=328 Identities=21% Similarity=0.299 Sum_probs=248.7
Q ss_pred CCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCC---EEEEEeCCCeEEEEEcccCCe------------
Q 008005 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ------------ 306 (581)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~---~lasgs~dg~i~iwd~~~~~~------------ 306 (581)
..+..+.+|.... . .++.+..++||.+.|.+++|...+. +||++|.|..|+||.+.....
T Consensus 166 gs~~~v~~~s~~~-d----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 166 GSKFVVDLYSSSA-D----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred CcceEEEEeccCC-c----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 3444455565441 1 4567889999999999999988554 899999999999999863320
Q ss_pred ------eeEE----------EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc--E-----EEEEecCCCeEE
Q 008005 307 ------VSLK----------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--C-----LHVYEKTGVGLI 363 (581)
Q Consensus 307 ------~~~~----------~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~-----~~~~~~~~~~v~ 363 (581)
.... ..+.||.+.|+++.|+|.+..|++++.|.++.+|...+.. - +....+......
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~ 320 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW 320 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee
Confidence 0111 2245999999999999999999999999999999876542 1 222233456789
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCC---eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------
Q 008005 364 SCGWFLDGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ 434 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------ 434 (581)
++.|+|+++.+++-+..|..++|..... ........|...|.+++|.|.|.++++++.|.+-+++-.-..+
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence 9999999999999999999999984321 2334455677799999999999999999999999998766333
Q ss_pred eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC------------------------------------------
Q 008005 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES------------------------------------------ 472 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------------------------------------------ 472 (581)
.+-..|...++|+++-+....+++|..+..+++|+...
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 23345777899999988777788888888889987642
Q ss_pred -CCc--------------------------------eeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-----cEEEE
Q 008005 473 -DPK--------------------------------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QVYIW 514 (581)
Q Consensus 473 -~~~--------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-----~I~iw 514 (581)
+.. .+.++.||. +.+.++..+|+++++|+++... .|++|
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG---yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG---YEVYALAISPTGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc---eeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence 000 011122333 4455666699999999998654 69999
Q ss_pred eCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecC
Q 008005 515 HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCN 578 (581)
Q Consensus 515 d~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~ 578 (581)
+..+......+.+|+-.|+.++||||+ ++|+++|.|.++.+|...+...... .....++|.|+
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 999999999999999999999999999 7999999999999999865443322 23666777664
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.2e-23 Score=174.47 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=200.6
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC--CeeeEEEEecCCCCCEEEEEeCC----CCCeEEEe
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSGHRKPVFTVSWSP----NDHQLLTC 335 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~sp----~~~~l~s~ 335 (581)
.-..+.-+.|.+.|+|.+|||+|.++|+|+.|.+|++..++.. +.......+..|.+.|..++|.. .+..|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 3344556789999999999999999999999999999876532 22223345778999999999965 34567776
Q ss_pred e-CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-------CccccEEEE
Q 008005 336 G-QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRISDM 407 (581)
Q Consensus 336 ~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~i 407 (581)
+ .|..|.+-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-........ .....|.++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 5 467788889999999999999999888764 3368899999999999999997544433221 223579999
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEec
Q 008005 408 AITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKG 482 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~ 482 (581)
++.|.|+.|++|-.|....+||++.+. ..+..|...|.++.|+|...|+++++.|..|++-|+...- -++.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 999999999999999999999999988 7788899999999999999999999999999999997631 23334445
Q ss_pred cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
|.... |.+ .|.|..--+++.+.|.++.+|-+.
T Consensus 318 hkdk~--i~~-rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKA--IQC-RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCce--EEE-EecCccceeeeccCcceEEEeccC
Confidence 65553 433 347777778899999999999753
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=3e-24 Score=207.91 Aligned_cols=157 Identities=19% Similarity=0.313 Sum_probs=125.7
Q ss_pred CCeEEEEECCCCe------eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCC------ceeEEEecccccee
Q 008005 422 EAAILLLDREANF------ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDP------KLVSRYKGHKRARF 488 (581)
Q Consensus 422 dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~ 488 (581)
.|.|-||+++..- .-.+.....|+.+.|+| |...|++++.||.|++|.+..+. .+...+.+|...++
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 3556666655422 22233456689999999 77899999999999999997542 34567888888877
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccccc
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
.+++... -...|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+| +.++|.+.||+|++|+.+..+.....
T Consensus 682 slRfHPL--AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 682 SLRFHPL--AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEecch--hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCcccc
Confidence 7766432 34688999999999999999999999999999999999999999 79999999999999999877655332
Q ss_pred -------CCCceEEecCCCC
Q 008005 569 -------QSNGIVHHCNGRI 581 (581)
Q Consensus 569 -------~~~~~~~~~~G~~ 581 (581)
....+.|.|||++
T Consensus 759 g~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred CCCCccCcceeEEEEecCcE
Confidence 2667899999974
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.5e-25 Score=200.47 Aligned_cols=260 Identities=15% Similarity=0.218 Sum_probs=207.2
Q ss_pred EEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
.+..+.+|.+.|.|++=+|+. ..+++|+.||.|++||+.+..+...+..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999976 7899999999999999999999999999999999999975 7899999999999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCC-EEEEEeeCCc
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNLINQE 464 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~ 464 (581)
++......+.... .+..+.-+..+..+++++. .|.+||..... ..+.-....|.++.|+|-.. .|+++.+|+.
T Consensus 136 ~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGPPLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCCcceeeeccc--cccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 9875444443332 5666776666777777765 68899986654 55555667799999999654 5666679999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-ceEEEeccCCCCEEEEEEcCCCCc
Q 008005 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
|.+||++.. .+++........ - ...|+|++-.+++|++|..++.||++.- .++....+|.+.|.+++|+|.| .
T Consensus 212 IvLyD~R~~-~Pl~KVi~~mRT---N-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~ 285 (433)
T KOG0268|consen 212 IVLYDLRQA-SPLKKVILTMRT---N-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-Q 285 (433)
T ss_pred eEEEecccC-Cccceeeeeccc---c-ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-c
Confidence 999999998 555544332222 1 2334778888999999999999998764 5678889999999999999999 7
Q ss_pred EEEEEECCCcEEEecCCccccccc------cCCCceEEecCCC
Q 008005 544 MLASASDDRTIRIWGLDQINMKHR------DQSNGIVHHCNGR 580 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~~------~~~~~~~~~~~G~ 580 (581)
-++|||.|.+|+||.++.+..... ...-++-|++|.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 999999999999999998875532 2256666776654
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.8e-23 Score=184.25 Aligned_cols=265 Identities=19% Similarity=0.311 Sum_probs=195.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEc-ccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEEEEE
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV-KEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~-~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd 345 (581)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||. ...+.+.+....+.|.+.|..+.|.+ -|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999994 44567888888999999999999976 689999999999999997
Q ss_pred cCC---------CcEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCC-CCeEEeeccCccccEEEEEEeeCC
Q 008005 346 VNS---------GECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 346 ~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
-.. -....++......|+++.|.| -|-.+++++.||.++||+.- -..+..+.-.+. +..+.. |-+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E--i~~~~~-pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE--IQNVID-PPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh--hhhccC-Ccc
Confidence 421 123445666788999999998 46679999999999999973 233444433332 111111 111
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECC---CCCEEEEEeeC-----CcEEEEEecCCC---ceeEEEec
Q 008005 414 KRIISICREAAILLLDREANFERWIEEEEVITSFSLSK---DNKYLLVNLIN-----QEIHLWSIESDP---KLVSRYKG 482 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~d-----~~i~iwd~~~~~---~~~~~~~~ 482 (581)
.+..+..|+.|+| ...+|++|+.+ +.++||...... ..+..+.+
T Consensus 167 -------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 167 -------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1222344566665 24567777654 478888776543 23445668
Q ss_pred cccceeEEEeeecC-CCCcEEEEEeCCCcEEEEeCCCC--------------------ceEEEeccCCCCEEEEEEcCCC
Q 008005 483 HKRARFVIRSCFGG-FEQAFIASGSEDSQVYIWHRYTG--------------------ELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 483 ~~~~~~~i~~~~~~-~~~~~l~sgs~dg~I~iwd~~~~--------------------~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
|..++..+.+.... ..-.+||+++.|| |+||++... +.+..+..|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 88887666554321 1345799999999 999997631 3455678899999999999999
Q ss_pred CcEEEEEECCCcEEEecCCccc
Q 008005 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.+|++.|+||+||+|..+-.+
T Consensus 301 -tiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 301 -TILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred -eEEeecCCCceeeehhhhhhh
Confidence 799999999999999876433
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.1e-24 Score=211.98 Aligned_cols=288 Identities=15% Similarity=0.243 Sum_probs=219.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe-eeEEEEecCCC---CCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHR---KPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~---~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~ 348 (581)
....|...++-..++.++. ....|+.+..... ..+...+.... -.+..+.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4456677788877887764 4578888765432 12222222211 2345678875 568999999999999999987
Q ss_pred ---CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEEEEEEcCC
Q 008005 349 ---GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (581)
Q Consensus 349 ---~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg 423 (581)
.+.+..|..|...+.++.|++ ...+|++|+.||+|++||++...-..........|.++.|+| .+..++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 566678899999999999998 456789999999999999987776666666667899999998 467899999999
Q ss_pred eEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC-
Q 008005 424 AILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ- 499 (581)
Q Consensus 424 ~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 499 (581)
.+.+||++... .++..|.++|.++.|+|++.+|++|+.|+.|+|||+.+. ........++ +..+..+.|-|..
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~-~~~~~~tInT--iapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS-RAKPKHTINT--IAPVGRVKWRPARS 276 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC-CccceeEEee--cceeeeeeeccCcc
Confidence 99999999877 677899999999999999999999999999999999864 2222222221 1223344445544
Q ss_pred cEEEEEeC--CCcEEEEeCCCC-ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 500 AFIASGSE--DSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 500 ~~l~sgs~--dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
..|++++. |-.|+|||++.. -+..++..|...++.++|.......+.+++.||+|..-.+++....
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 45666654 779999998764 3567888999999999998765678999999999988777765543
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.5e-24 Score=188.77 Aligned_cols=254 Identities=20% Similarity=0.333 Sum_probs=211.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc------cC------------------------------
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK------ED------------------------------ 304 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~------~~------------------------------ 304 (581)
...|+..+.||.+.|+|+.|++.+.++++++.|++..||... .+
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 567899999999999999999999999999999999999831 10
Q ss_pred Ce-eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008005 305 GQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 305 ~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.. -.++..+.+|...|.+..|...|+.+++++.|.+..+||+++|+.+..+.+|+...+.|+-+|..+.+++.+.|.+.
T Consensus 259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF 338 (481)
T ss_pred ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCcee
Confidence 00 12456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEe
Q 008005 384 CLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 384 ~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
++||++. -.....+..|...|+++.|..+. .+++++.|.+|++||+++.. ...+....+++.++++..+..++.-.
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc
Confidence 9999974 33445566777799999998765 68899999999999999987 66677888999999999999999999
Q ss_pred eCCcEEEEEecCCCceeE----EEeccccceeEEEeeecCCCC--cEEEEEeCCCcEEEEeCCCC
Q 008005 461 INQEIHLWSIESDPKLVS----RYKGHKRARFVIRSCFGGFEQ--AFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 461 ~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~l~sgs~dg~I~iwd~~~~ 519 (581)
.+..|++||+... .+.+ .-.+|.. .+.+|.|..+. .-|++++.|..+.-|.+...
T Consensus 418 DNRqvRlfDlnG~-RlaRlPrtsRqgHrR---MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 418 DNRQVRLFDLNGN-RLARLPRTSRQGHRR---MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCceEEEEecCCC-ccccCCcccccccce---eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8999999999875 2221 2234444 45555554322 35788899999999987653
No 124
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3e-23 Score=194.24 Aligned_cols=297 Identities=14% Similarity=0.171 Sum_probs=224.0
Q ss_pred ceeecccccCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCC
Q 008005 264 TLQILEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg 339 (581)
......-|.+.|++++|+|.. +++|+|+.-|.|-+||+... ....-...+..|..+|.++.|+| +...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345667799999999999955 48999999999999999522 22344566789999999999999 557899999999
Q ss_pred cEEEEEcCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EeeccCccccEEEEEEeeCCC-E
Q 008005 340 AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGK-R 415 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~-~ 415 (581)
+|+.-|++++.....+. .....+.++.|+.+...++.+..=|...+||+++... ......|...|..++++|... +
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999998875433333 3455677888888888888888888999999976433 333334445899999999654 6
Q ss_pred EEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec---CCCceeEEEe-ccc-
Q 008005 416 IISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE---SDPKLVSRYK-GHK- 484 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~-~~~- 484 (581)
+++++.|++.+|||++... .....|...|.+..|||.+-.|++.+.|..|+|||.. ....+...+. .+.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 8899999999999998754 3456889999999999988889999999999999984 2212332222 121
Q ss_pred -cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC-CEEEE-EEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 485 -RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG-SVNCV-SWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 485 -~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~v~~l-~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.....+.+. |.|+..+|++|..-..|-|+|-..++.+..+..... .|.++ .|||-+..+++-++..|.|.||.-+.
T Consensus 418 ~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 418 GRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 122233333 488999999999999999999988888888765443 56554 69998832455555678888886543
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.2e-23 Score=201.91 Aligned_cols=302 Identities=17% Similarity=0.246 Sum_probs=239.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-----------CCeEEEeeCCCcEEE
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-----------DHQLLTCGQEEAIRR 343 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----------~~~l~s~~~dg~i~v 343 (581)
..++.|++....|...-.|..++|||++.-.+......+..|...|+.+.--|- ..-++||+.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346789998999999999999999999987777677777889999998876661 235899999999999
Q ss_pred EEcCCCcEEEEE-------------------------------------ecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 344 WDVNSGECLHVY-------------------------------------EKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 344 wd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
||+..+..-..+ -.....+.+++.+|++++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998753211110 0123578999999999999999999999999
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeC---CCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCC--CEEEE
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDD---GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN--KYLLV 458 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~--~~l~~ 458 (581)
++..-....+...|...|.|+.|+.. .+.|++++.|..|.+||..... ...-.|...|+++.|--.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99988888888888889999999853 4689999999999999998766 5566789999999998876 67888
Q ss_pred EeeCCcEEEEEecCCCceeEEEecccc--ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc---CCCCEE
Q 008005 459 NLINQEIHLWSIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG---HSGSVN 533 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~ 533 (581)
++.|..|.+--.... .....+..|.. ....+.-....|..+++++++.|..|+|||+.+|+....|++ |++...
T Consensus 567 cGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred ccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 888888765433321 22233332222 222333344478899999999999999999999999999986 678889
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecC
Q 008005 534 CVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCN 578 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~ 578 (581)
.+...|.| .++++...|.++.++|+-.+++... ....|+.|.+|
T Consensus 646 Kv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 646 KVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred EEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 99999999 7999999999999999999987643 33566666665
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.8e-21 Score=184.32 Aligned_cols=289 Identities=16% Similarity=0.263 Sum_probs=223.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....+.-++.|..+.|+|.+.-|+.....+.+..|+.+.+.-.+....+..+. ..|.|++|.++|. ++||..+|.|.|
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~I 271 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILI 271 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEE
Confidence 33445567788999999966655444457889999998776555555565544 4699999999885 789999999999
Q ss_pred EEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe------------EEee---------------
Q 008005 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE------------LESW--------------- 396 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~--------------- 396 (581)
|+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-+-++ +...
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 99988888877779999999999998875 5559999999999842111 0000
Q ss_pred -------------ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC
Q 008005 397 -------------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 397 -------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
...|......++.+|+.+.+++++.|+.+++|+ ............+..++.|+|.| .+++|+..|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccc
Confidence 113334567788899999999999999999999 43335556678889999999999 999999999
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-ceEEEec-cCCCCEEEEEEcCCC
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-ELVLALA-GHSGSVNCVSWNPAN 541 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~-~h~~~v~~l~~~p~~ 541 (581)
...+.|.++. ..+..-.. ..+ +.+..++|+|.+||.|+.|+.|+||.+... ....... .|.++|+.+.|++|+
T Consensus 429 ~w~V~d~e~~-~lv~~~~d-~~~---ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIHTD-NEQ---LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred eEEEEecccc-eeEEEEec-CCc---eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 9999999884 44444433 333 666667999999999999999999997654 3333332 244899999999999
Q ss_pred CcEEEEEECCCcEEEecCCccc
Q 008005 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+++.+-+.|-.|..|....-+
T Consensus 504 -~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 504 -QFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred -ceEEeccCceEEEEEccccCc
Confidence 799999999999999544433
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-22 Score=195.86 Aligned_cols=281 Identities=15% Similarity=0.217 Sum_probs=231.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
-..+|.++||+.+.+.||.+-.||.|.||++..+ +-....+.++. ..|-+++|++ +..|++.+.+|.|.-||+.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 4568999999999999999999999999999854 44555566554 5699999994 668999999999999999999
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES--WKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+....+....+.|++++.+|.+..++.|+.||.++.++...+.+.. ......+++.+++|+|++..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999999999999999999988888887766543 33444569999999999999999999999999
Q ss_pred EECCCCeeeE-----E----e-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 428 LDREANFERW-----I----E-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 428 ~d~~~~~~~~-----~----~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
||...+.... . . ...-|.++.+-.+ ..+++|...|.|.+||...+ .+++.+..|...+..+.. .+
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav---~~ 255 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAV---AD 255 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEE---cC
Confidence 9999887322 1 1 2234677777744 57889999999999999988 888888888888655544 67
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCce----EEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGEL----VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
++..+++++.|+.|.-|...+++. ......|...|.+++..++ .+++||.|.++.+-.....
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~ 321 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREF 321 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEcccccc
Confidence 889999999999999988766533 2334568889999998874 7999999999998776653
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.8e-23 Score=207.22 Aligned_cols=263 Identities=18% Similarity=0.313 Sum_probs=213.7
Q ss_pred cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008005 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 392 (581)
..|....+.++|.|+|.+|++|+.||.|++|+.... +....+..+...|.+++. ++.+|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468889999999999999999999999999997665 444444446667777765 45699999999999999998877
Q ss_pred EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
..........++++++++.+|++++.|+.|-.|++.+..... ....+|..+|.++.|+|.+++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 766666666689999999999999999999999999988766 677899999999999999999999999999999999
Q ss_pred cCCCceeEEEeccccc-----eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--CCCCEEEEEEcCCCCc
Q 008005 471 ESDPKLVSRYKGHKRA-----RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--HSGSVNCVSWNPANLH 543 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ 543 (581)
.++ .+...+.+-... ...+.-..|+|++..++..+.|+.|++|+..+++....+.. |...+.+++|+|.| .
T Consensus 168 ~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG-~ 245 (933)
T KOG1274|consen 168 QDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG-K 245 (933)
T ss_pred ccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC-c
Confidence 986 544444432211 11233445699988888899999999999999999887765 45559999999999 7
Q ss_pred EEEEEECCCcEEEecCCcccccc-ccCCCceEEecCCC
Q 008005 544 MLASASDDRTIRIWGLDQINMKH-RDQSNGIVHHCNGR 580 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~-~~~~~~~~~~~~G~ 580 (581)
+||+++.||.|.|||+++..... ....-+.+|.|+++
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EEeeeccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence 99999999999999999744311 12255666666653
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=195.62 Aligned_cols=272 Identities=20% Similarity=0.263 Sum_probs=218.6
Q ss_pred CEEEEEe-CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEE
Q 008005 285 KYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (581)
Q Consensus 285 ~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 363 (581)
.+++++. .-..+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 4666654 34578999987543322 2233567899999999999999998999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCC---------CCeEEeeccCccccEEEEEEeeC--CCEEEEEEcCCeEEEEECCC
Q 008005 364 SCGWFLDGGGIFAGMTDKSICLWDLD---------GRELESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREA 432 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~ 432 (581)
|+.|+.|+.+|++|+.||.|.+|.+. ..........|.-+|+++.+.+. ..++++++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 99999999999999999999999872 22344455667779999998876 45899999999999999999
Q ss_pred Ce-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---------------ceeEEEeccccceeEEEeeecC
Q 008005 433 NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---------------KLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 433 ~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
+. ......+..+.+++.+|.+..+++|+.+|.|.+.++...+ ..+..+.+|.+. ..|++...+
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLais 286 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAIS 286 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEEe
Confidence 98 6667788899999999999999999999999998876532 234456677762 236666668
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+..+..-+....+-.|++.
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 8999999999999999999999999999887789999999977653333333344455556554
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=202.71 Aligned_cols=290 Identities=18% Similarity=0.324 Sum_probs=230.2
Q ss_pred cceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
+.+..++.-.+.|+.++|..||. .+|+|+..|.+.+||++.... .......|.+.|....|.|....+++++.|+.+
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--INVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--eeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 34556664469999999999998 677888889999999985421 122223566666666666666666666666666
Q ss_pred EEEEcCCCc-----------------EE----------------------------------------------------
Q 008005 342 RRWDVNSGE-----------------CL---------------------------------------------------- 352 (581)
Q Consensus 342 ~vwd~~~~~-----------------~~---------------------------------------------------- 352 (581)
++|=.+++. ++
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 555322110 00
Q ss_pred ------EE-------------------------------------------EecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008005 353 ------HV-------------------------------------------YEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 353 ------~~-------------------------------------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.. ++.....+++++.++.|++.+.|+..|.|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 00 00012457888888999999999999999
Q ss_pred EEEeCCCCeEEeec---cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEE
Q 008005 384 CLWDLDGRELESWK---GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 384 ~vwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
-+|++.++...... ..|..+|+.++...-++.+++++.+|.+.+||..+.. .........++.+..+.....++++
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 99999988776655 4677899999999999999999999999999999887 5556677889999999999999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC
Q 008005 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p 539 (581)
..|-.|.++|..+. +.++.|.+|.+.+ ....++|+|++|++++.|++|++||+.++.++-.+. -..+++++.|+|
T Consensus 553 ~ddf~I~vvD~~t~-kvvR~f~gh~nri---td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTR-KVVREFWGHGNRI---TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred cCceeEEEEEchhh-hhhHHhhccccce---eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence 99999999999998 8999999999884 444459999999999999999999999999988775 467899999999
Q ss_pred CCCcEEEEEECC-CcEEEecCC
Q 008005 540 ANLHMLASASDD-RTIRIWGLD 560 (581)
Q Consensus 540 ~~~~~l~s~s~D-g~I~iW~~~ 560 (581)
+| .+|||+..| .-|++|.-.
T Consensus 628 ng-D~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 628 NG-DFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CC-CEEEEEEecCceEEEEEch
Confidence 99 799999988 679999754
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=194.40 Aligned_cols=268 Identities=17% Similarity=0.271 Sum_probs=209.0
Q ss_pred EeCC-CeEEEEEcccCCeeeEEEEecCC-CCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCCCcEEEEEecCCCeEEEEE
Q 008005 290 SSKD-QSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (581)
Q Consensus 290 gs~d-g~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 366 (581)
++.| .++.+||+.++.. ..++++. ...-.++..- ++.+++++.. ...+.+|.+...........-.+++.+++
T Consensus 13 sS~d~~~~~~~dl~TGt~---~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTS---LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEecCCCce---eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 3444 4599999998743 3344433 1111111111 3456666654 45789999876655554444567899999
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----------e
Q 008005 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----------E 435 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~ 435 (581)
-+|+|.+++.|+..|.|++|.+.++.+......|...|+++.|+.||.++++++.||.|.+|++..-. .
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 99999999999999999999999999988888888899999999999999999999999999864321 5
Q ss_pred eEEecCCceEEEEECCC--CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEE
Q 008005 436 RWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
.+..|.-+|+.+...+. ..++++++.|.++++||+..+ .++..+.... .+.++...|.+..+++|+++|.|.+
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~----si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPS----SIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCC----cceeEEEcccccEEEecCCcceEEe
Confidence 56678889999988765 468999999999999999998 6665555433 2556666999999999999999999
Q ss_pred EeCCCC----------------ceEEEeccCCC--CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 514 WHRYTG----------------ELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 514 wd~~~~----------------~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.++... ..+..+.+|.+ .|+|++.+-|| .+|++|+.||.|+|||+...++...
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHH
Confidence 875432 34566788988 99999999999 7999999999999999998776644
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-24 Score=212.71 Aligned_cols=243 Identities=12% Similarity=0.167 Sum_probs=201.6
Q ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 275 VWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 275 V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
+..|.|+. +.++|||++..|.|.+||+.....-+....+..|...|+++.|++ ...+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34466664 567999999999999999976333355667889999999999998 5578999999999999999999999
Q ss_pred EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 353 HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.++.+....|..+.|+| .+..|+++...|.+.+||++. .........|.++|.++.|+|++.+|++|++|+.|++||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 99988899999999999 677899999999999999975 4445556778889999999999999999999999999999
Q ss_pred CCCe---eeEEecCCceEEEEECCCCCEE-EEEee--CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE
Q 008005 431 EANF---ERWIEEEEVITSFSLSKDNKYL-LVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 431 ~~~~---~~~~~~~~~i~~~~~sp~~~~l-~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
.+.. ...+....++.++.|-|+..+. ++++. |-.|+|||++...-+...+..|...+..+.+ -+.+...+.+
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W--~~~d~~~l~s 327 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW--DSGDRINLWS 327 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec--cCCCceeeEe
Confidence 8765 5667778899999999987664 44433 7789999999988888999999887555443 3456678899
Q ss_pred EeCCCcEEEEeCCCC
Q 008005 505 GSEDSQVYIWHRYTG 519 (581)
Q Consensus 505 gs~dg~I~iwd~~~~ 519 (581)
++.||.|..-.++++
T Consensus 328 ~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNA 342 (839)
T ss_pred ecCccHHHHhhhhcc
Confidence 999998876555443
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=7.8e-23 Score=200.55 Aligned_cols=332 Identities=17% Similarity=0.258 Sum_probs=255.2
Q ss_pred HHHHcccc-ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee
Q 008005 229 ALDVQRDS-CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307 (581)
Q Consensus 229 ~~~~q~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~ 307 (581)
++.||+.. .+++.+.|..+-+|.......--...-.+....|.....+...|+|++..+++-+..|..++|.......+
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce
Confidence 45667766 77888888888888755432111112223444566778999999999999999999999999996655566
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-C---cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-G---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.......||.+.|..++|+|.|.+|+++|.|.+-|++-.-. . ..+..-+.|....+|+++-+....+++|.....+
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 67777899999999999999999999999999999986541 1 2233445678889999998877788899888999
Q ss_pred EEEeCCC----------C-e----------------------EE--------------e---------------------
Q 008005 384 CLWDLDG----------R-E----------------------LE--------------S--------------------- 395 (581)
Q Consensus 384 ~vwd~~~----------~-~----------------------~~--------------~--------------------- 395 (581)
++|+... + . .. .
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 9988530 0 0 00 0
Q ss_pred --------eccCccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEe
Q 008005 396 --------WKGQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 396 --------~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
....|...|.+++.+|+++.+++++.. ..|++|+..+-. .....|.-.|+.++||||+++|++.+
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 001566789999999999999999875 469999988766 55778999999999999999999999
Q ss_pred eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--ceEEE--eccCCCCEEEEE
Q 008005 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLA--LAGHSGSVNCVS 536 (581)
Q Consensus 461 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~--~~~h~~~v~~l~ 536 (581)
.|.++.+|...........|.........|..|.|+|++.+++|+|.|.+|++|..... +.+.. ...+..+|++++
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 99999999986543443443333333345777888999999999999999999998776 44333 345789999999
Q ss_pred EcCCC----CcEEEEEECCCcEEEecCC
Q 008005 537 WNPAN----LHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 537 ~~p~~----~~~l~s~s~Dg~I~iW~~~ 560 (581)
|.|-. ..+++.|-..|.|.+|...
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecc
Confidence 98743 1377888899999999976
No 134
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-22 Score=199.34 Aligned_cols=263 Identities=15% Similarity=0.261 Sum_probs=215.3
Q ss_pred ccccceeccCCCCCceeeccCCCCcccccccceeecccccCcEEE-EEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEE
Q 008005 233 QRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWF-LQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLK 310 (581)
Q Consensus 233 q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~ 310 (581)
-...|+...+.++.+.+|..+....- ..+.+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|..... .+.
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l-----~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~ 94 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYL-----ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPL 94 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccc-----cceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cch
Confidence 34558889999999999976543321 24567788888888 88876 4456999999999999999765 566
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
.++.+|...|.|++...++. +++|+.|.++++|.. +++...+.+|...|+++...|++ .++||+.|.+|++|.-
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-- 168 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-- 168 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--
Confidence 88999999999999887776 999999999999975 56777799999999999999987 8999999999999985
Q ss_pred CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
++.......|...|+.+++-+++ .+++++.||.|+.|++.... .....|...+.+++...++..+++++.|+++++|+
T Consensus 169 ~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 169 GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 44555555677899999999875 57899999999999996666 77889999999999888999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.. .+.+.+.-....++...+. ++|. |++|+.||.||||...
T Consensus 248 ~~---e~~q~I~lPttsiWsa~~L---~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 248 KD---ECVQVITLPTTSIWSAKVL---LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred cC---ceEEEEecCccceEEEEEe---eCCC-EEEeccCceEEEEEec
Confidence 86 5566665555555554443 2333 7889999999999765
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6e-23 Score=177.20 Aligned_cols=232 Identities=22% Similarity=0.357 Sum_probs=190.7
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC--CCCEEEEEeCCCeEEEEEcccCCeeeEEEEec
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~ 314 (581)
.+...+.|..+.+|.-.... +.+.+..|.||.++|+.++|.. -|.+||+++.||.|.||.-..+ ++.......
T Consensus 25 rlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~ 99 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHA 99 (299)
T ss_pred eeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhh
Confidence 34566778888888654332 3678899999999999999987 8999999999999999998754 777778888
Q ss_pred CCCCCEEEEEeCCC--CCeEEEeeCCCcEEEEEcCCC---cEEEEEecCCCeEEEEEEecC---C-----------CeEE
Q 008005 315 GHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLD---G-----------GGIF 375 (581)
Q Consensus 315 ~h~~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~ 375 (581)
.|...|++++|.|. |-.|++++.||.|.|.+.++. ...+....|...|++++|.|. | +.|+
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 99999999999994 567999999999999988754 234456688999999999985 4 5699
Q ss_pred EEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEeeCC----CEEEEEEcCCeEEEEECCCCe-----eeEEecCCce
Q 008005 376 AGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANF-----ERWIEEEEVI 444 (581)
Q Consensus 376 sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i 444 (581)
+|+.|+.|++|+.+... .......|...|++++|.|.- .++++++.||++.||..+... .........+
T Consensus 180 SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcce
Confidence 99999999999997643 334456777899999999964 579999999999999887432 2223456779
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 445 TSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
..+.||+.|+.|++++.|+.+.+|.-...
T Consensus 260 w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999999999986543
No 136
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=4.2e-22 Score=184.05 Aligned_cols=292 Identities=16% Similarity=0.236 Sum_probs=224.9
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccC------CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..+|.++.|.+++. .+|||+.|..|+||.+..+ ..+.....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999877 9999999999999988632 2466777889999999999999999999999999999999
Q ss_pred EcC--------C--------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEE
Q 008005 345 DVN--------S--------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA 408 (581)
Q Consensus 345 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~ 408 (581)
... + ....+.+.+|...+..++|+|++..+++++.|..+++||+..+.+......|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123455668889999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCee---------------------eEEecC----CceEEEEECCCCCEEEEEee--
Q 008005 409 ITDDGKRIISICREAAILLLDREANFE---------------------RWIEEE----EVITSFSLSKDNKYLLVNLI-- 461 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------~~~~~~----~~i~~~~~sp~~~~l~~~~~-- 461 (581)
|.|-++++++-+.|...+.++...... ....|+ .-...++|+|+|..+++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 999999999998888666666544320 001111 12456789999999987542
Q ss_pred --C-----CcEEEEEecCCCceeEEEeccccceeEEEeeec---------------CCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 462 --N-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG---------------GFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 462 --d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
. +..++|+-....++...+.........++++.. -|.+..++.+ ....|+|||.++.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccc
Confidence 2 234566655555566666655555444444321 2233334444 4567999999988
Q ss_pred ceEEEec-cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 520 ELVLALA-GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 520 ~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.++.... -|-..|++++|+++| ..++..|.||...+-.++..++-
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcchhcc
Confidence 8877654 388999999999999 69999999998888777665543
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.4e-23 Score=195.59 Aligned_cols=239 Identities=15% Similarity=0.284 Sum_probs=202.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
....|.++...|||+.|++|+.-.++.|||+.... ..+...+..-.-...+++.+||.+..++|+.||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 45789999999999999999999999999997542 23344455445567889999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.++.|.+|.+.+.|+..++||..|.+|+-|++|+.||++.+......... ..|.++.++|++.++++|-.++.+.+...
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEec
Confidence 99999999999999999999999999999999999999876554443333 37999999999999999999999999988
Q ss_pred CCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC
Q 008005 431 EANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (581)
Q Consensus 431 ~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg 509 (581)
.... .....|+..|.++.|.+.|+++++.+.|+-+..|...-+..+... +.. ..+.+|-.+.+.++|+||+.|.
T Consensus 622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-kE~----SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KES----SSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-ccc----CcceeeeeccCceEEEecCCCc
Confidence 8776 666678999999999999999999999999999998877333322 211 1355666789999999999999
Q ss_pred cEEEEeC
Q 008005 510 QVYIWHR 516 (581)
Q Consensus 510 ~I~iwd~ 516 (581)
.-.||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888864
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=196.76 Aligned_cols=299 Identities=19% Similarity=0.273 Sum_probs=210.7
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
+....++.+.++...... .+...+.+.....|.+.|..+.|.|....|++++.|.++++||+....- .-...+.+|..
T Consensus 68 avadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~~ 145 (720)
T KOG0321|consen 68 AVADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHTG 145 (720)
T ss_pred EEecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeeccccc
Confidence 334455556666433211 1112223456678999999999999666899999999999999986532 22235889999
Q ss_pred CEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCc---------------------------EEEEEecCCCeEEE---EEE
Q 008005 319 PVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGE---------------------------CLHVYEKTGVGLIS---CGW 367 (581)
Q Consensus 319 ~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~ 367 (581)
.|.+++|.| |...|++|+.||.|.|||++-.. .+..-..+...|.+ +.+
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~ 225 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL 225 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence 999999999 45678999999999999986321 01111233344555 666
Q ss_pred ecCCCeEEEEeC-CCcEEEEeCCCCeEEe------ec-----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee
Q 008005 368 FLDGGGIFAGMT-DKSICLWDLDGRELES------WK-----GQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435 (581)
Q Consensus 368 ~~~~~~l~sg~~-dg~i~vwd~~~~~~~~------~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 435 (581)
+.|...|++++. |+.|+|||++...... .. ......+.++.....|.+|.+.|.|+.|++|++.+...
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI 305 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc
Confidence 778899999887 9999999997532211 11 11123577888888899999999999999999987651
Q ss_pred e----EEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC
Q 008005 436 R----WIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (581)
Q Consensus 436 ~----~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg 509 (581)
. +..+ ......-..+|++.++++|+.|...++|.+.........+.+|...++.+.++. ++... ++++++|.
T Consensus 306 sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~-v~TcSdD~ 383 (720)
T KOG0321|consen 306 SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTP-VATCSDDF 383 (720)
T ss_pred CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCC-ceeeccCc
Confidence 1 1111 111223356899999999999999999999998888889999999888877776 55555 45559999
Q ss_pred cEEEEeCCCCc--------------eEEEeccCCCCEEEEEEcCCC
Q 008005 510 QVYIWHRYTGE--------------LVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 510 ~I~iwd~~~~~--------------~~~~~~~h~~~v~~l~~~p~~ 541 (581)
.++||++..+- ....+++|.-.+..+.|+-.+
T Consensus 384 ~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~ 429 (720)
T KOG0321|consen 384 RVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRK 429 (720)
T ss_pred ceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccc
Confidence 99999986542 223445665555555555433
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.9e-22 Score=189.25 Aligned_cols=236 Identities=16% Similarity=0.268 Sum_probs=185.5
Q ss_pred ceeccCCCCCceeeccCCCCcccc---cccceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCe----ee
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRI---PSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQ----VS 308 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~----~~ 308 (581)
++...+....+.+|+-........ ...+-.+|.||.++=+.++|++... .|++|+.|++|++||+..... ..
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcccc
Confidence 333445556677765332222211 4466778999999889999999654 899999999999999975443 55
Q ss_pred EEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcC--CCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEE
Q 008005 309 LKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSIC 384 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~ 384 (581)
....+.+|...|..++|++ +..++++++.|+.+.|||++ +.++.+....|...+.|++|+| ++..|++|+.|++|+
T Consensus 219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~ 298 (422)
T KOG0264|consen 219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVA 298 (422)
T ss_pred ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEE
Confidence 6678899999999999999 56789999999999999999 5667778889999999999999 566788999999999
Q ss_pred EEeCCC-CeEEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-------------e---eEEecCCceEE
Q 008005 385 LWDLDG-RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF-------------E---RWIEEEEVITS 446 (581)
Q Consensus 385 vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-------------~---~~~~~~~~i~~ 446 (581)
+||++. .........|...|..+.|+|.. ..|++++.|+.+.+||+..-. . ..-+|...|..
T Consensus 299 LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 299 LWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred EeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence 999985 33344455666799999999975 467888899999999987532 1 11256778999
Q ss_pred EEECCCCCE-EEEEeeCCcEEEEEecC
Q 008005 447 FSLSKDNKY-LLVNLINQEIHLWSIES 472 (581)
Q Consensus 447 ~~~sp~~~~-l~~~~~d~~i~iwd~~~ 472 (581)
+.|+|...+ +++.+.|+.+.||.+..
T Consensus 379 fsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 379 FSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999998765 56677899999999864
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.9e-20 Score=183.58 Aligned_cols=280 Identities=13% Similarity=0.082 Sum_probs=199.7
Q ss_pred ccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
....+..+.+|+... .+++..+.+|.. +.+++|+|+++.+ ++++.++.|++||..++. ....+..+..
T Consensus 6 s~~~d~~v~~~d~~t-------~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~ 74 (300)
T TIGR03866 6 SNEKDNTISVIDTAT-------LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGPD 74 (300)
T ss_pred EecCCCEEEEEECCC-------CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCCC
Confidence 344566677775332 234566665544 6789999999976 567788999999998653 3344444433
Q ss_pred CEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEee
Q 008005 319 PVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESW 396 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~ 396 (581)
+..++|+|+++.++++ +.++.+++||+.+++.+..+... ..+.+++|+|++..++++..++ .+.+||..+......
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 5678999999877654 56899999999998877776533 3467899999999999988775 567789887665443
Q ss_pred ccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCee-eEEe-c-------CCceEEEEECCCCCEEEEE-eeCCcE
Q 008005 397 KGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFE-RWIE-E-------EEVITSFSLSKDNKYLLVN-LINQEI 465 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~-~-------~~~i~~~~~sp~~~~l~~~-~~d~~i 465 (581)
.... ..+..++|+++++.+++++ .++.|++||+++... .... + ......++|+|++++++++ ..++.+
T Consensus 153 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 153 VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 2222 2467899999999886554 689999999998762 2111 1 1123568899999986654 456789
Q ss_pred EEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE-eCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC
Q 008005 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p 539 (581)
.+||+.+. +....+.. ... +....++|++++|+++ +.+|.|.+||+.+++++..+... ...++++++|
T Consensus 232 ~v~d~~~~-~~~~~~~~-~~~---~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTY-EVLDYLLV-GQR---VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCC-cEEEEEEe-CCC---cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999876 44444322 222 2233458999999876 46899999999999999988754 5568888875
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=186.41 Aligned_cols=261 Identities=17% Similarity=0.272 Sum_probs=213.3
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC--cEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCe
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~ 392 (581)
-.++|+++.|+|....|++|+.|++++||.+... ..++.+.-...+|.+++|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3467999999999999999999999999988643 45566666688999999999999 89999999999999998876
Q ss_pred EEeeccC---ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 393 LESWKGQ---KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 393 ~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
+..+... ....+....+++++++|+..+..|.|.+....++. ...+..++.+..++|+.|++.|++++.+|.|.+|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 6554432 23357788999999999999999999999999888 6777888999999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC------CceEEEeccCCCCEEEEEEcCCCC
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT------GELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~------~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
|++.. .++.++..... +.....|. ++++.|+|+|+..|.|.|||..+ .+++..+..-...|+++.|+|+.
T Consensus 372 nl~~~-~~~~rf~D~G~-v~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~- 447 (514)
T KOG2055|consen 372 NLRQN-SCLHRFVDDGS-VHGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA- 447 (514)
T ss_pred ecCCc-ceEEEEeecCc-cceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-
Confidence 99998 77777764433 33344444 88999999999999999999653 45667776667889999999999
Q ss_pred cEEEEEEC--CCcEEEecCCccccccccC--------CCceEEecCCC
Q 008005 543 HMLASASD--DRTIRIWGLDQINMKHRDQ--------SNGIVHHCNGR 580 (581)
Q Consensus 543 ~~l~s~s~--Dg~I~iW~~~~~~~~~~~~--------~~~~~~~~~G~ 580 (581)
.+||.||. +..+|+-.+.....-...+ ...+.|+|+|.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 68887774 5678887776655433222 67788888765
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=174.87 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=209.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCC-------e--eeEEEEec-CCCCCEEEEEeC-------CCCCeEEEeeCCC
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDG-------Q--VSLKHRLS-GHRKPVFTVSWS-------PNDHQLLTCGQEE 339 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~-------~--~~~~~~~~-~h~~~V~~l~~s-------p~~~~l~s~~~dg 339 (581)
.+.|||||..|++-+.|..+.+|++.... . .+....+. .....|...+|- |+..++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 57899999999999999999999985321 0 01111111 123457777775 5778999999999
Q ss_pred cEEEEEcCCCcEEEEEecCC-----CeEEEEEEecCCCeEEEEeCCCcEEEEeC-CCCeE---Eee----ccCccccEEE
Q 008005 340 AIRRWDVNSGECLHVYEKTG-----VGLISCGWFLDGGGIFAGMTDKSICLWDL-DGREL---ESW----KGQKTLRISD 406 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~~dg~i~vwd~-~~~~~---~~~----~~~~~~~i~~ 406 (581)
-|++||.-+|+....+..-+ ....+++|+|||.+|++| ....|+++|+ +.+.- ... .....+-+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 99999999999877765431 245689999999999877 4578999999 33221 111 1122456899
Q ss_pred EEEeeCCC-EEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEec
Q 008005 407 MAITDDGK-RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 407 i~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~ 482 (581)
++|+|... .+++++...++-+|.-.... .....|.+.|+.+.|.++|+.|++|.. +..|..||++....++..+..
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 99999655 78888888887777666555 556689999999999999999999886 779999999988788888877
Q ss_pred ccc-ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCC
Q 008005 483 HKR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-GELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 483 ~~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
|.. ....|.+- ..|.+++|++|+.||.|++||++. |..+..+..|+..++.++++|-- .+++|++...
T Consensus 293 hv~~TNQRI~FD-ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGqr 362 (406)
T KOG2919|consen 293 HVGDTNQRILFD-LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQR 362 (406)
T ss_pred hccCccceEEEe-cCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCce
Confidence 776 33333332 378999999999999999999988 78788889999999999999987 4888887543
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=179.01 Aligned_cols=293 Identities=16% Similarity=0.191 Sum_probs=221.7
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC---CeeeEEEEe-cCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
.+.+.+|.+.|.++.||.++++||+|+.|..+++|+++.- ...+++... ..|...|.|++|......+++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 4567789999999999999999999999999999998631 111222222 235578999999998899999999999
Q ss_pred EEEEEcCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe----EEeeccCccccEEEEEEeeCCC
Q 008005 341 IRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
|...|+++.+.+..+... .+.|+.+..+|..+.|++.+.++.|.+||++..+ +.... ........+.|+|...
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-N~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-NSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-CCCccceeeeecCCCc
Confidence 999999999988777543 4589999999999999999999999999997543 22222 2223577888888654
Q ss_pred -EEEEEEcCCeEEEEECCCCeee---------EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc
Q 008005 415 -RIISICREAAILLLDREANFER---------WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 415 -~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
.|++.+..+-+-+||.+..... .......-.++.|+|+|+.|++--....-.+||+-....++..+....
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 5677788889999999876511 112233447789999999999887777788899987544454444222
Q ss_pred c---ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-----------------------ceEEEeccCCCCEEEEEEc
Q 008005 485 R---ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-----------------------ELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 485 ~---~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~~ 538 (581)
. ....+..|.+. +..-+++|+.+-.|++|.+... +.+..+++|.+.++.+.|+
T Consensus 288 ~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 1 22234444433 3445999999999999986421 2346788999999999999
Q ss_pred CCCCcEEEEEECCCcEEEecCC
Q 008005 539 PANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 539 p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
|.. ++|++.+-.+.++||.-.
T Consensus 367 ~H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 367 QHN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCc-ceEeccchhhheeccccc
Confidence 998 799999999999999764
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.7e-23 Score=206.05 Aligned_cols=254 Identities=17% Similarity=0.306 Sum_probs=220.2
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 363 (581)
+.+++.+..+..+++|+... +..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 34455555666788888752 346888888888866788999999999999999988888888999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC-Ce-eeEEecC
Q 008005 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA-NF-ERWIEEE 441 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~-~~~~~~~ 441 (581)
++.|+++...|++|+.+|+|++||+...........|...+..+.|+|-+.+.+.++.|+.+.+||.+. +. ..+..|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 999999999999999999999999998887777777888999999999999999999999999999994 44 4445577
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008005 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
..+..+.|+|+|++++.++.|..+++||+..+ +....|..|...+..+. ++|..-++++|+.|++|++||+++.+.
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEE
Confidence 88999999999999999999999999999888 88999999988755444 588889999999999999999999999
Q ss_pred EEEeccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 522 VLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 522 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+.........|.+.+|+|++ ..+.+|..+
T Consensus 231 I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCc-eeeecCchh
Confidence 99888888999999999999 566665543
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3e-21 Score=173.71 Aligned_cols=291 Identities=20% Similarity=0.318 Sum_probs=224.3
Q ss_pred eeecccccCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEcccCCeeeEEEEec--CCCCCEEEEEeCCC----CCeEE
Q 008005 265 LQILEAHSDEVWFLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLL 333 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~-----~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~sp~----~~~l~ 333 (581)
.+..+.|+.+|..++|++ .-..+|+.+. ..+.+|.......+...+... .|......++|+-+ ..++|
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 345678999999999985 2345666654 569999987665444444432 36777888899763 45799
Q ss_pred EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeecc---CccccEEEEEE
Q 008005 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAI 409 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~i~~ 409 (581)
.+|.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++++..+..... .|...|.++.|
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999999965 678899999999999999988776653 56678999999
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe-----eeE-------------------------EecCCceEEEEECCCCCEEEEE
Q 008005 410 TDDGKRIISICREAAILLLDREANF-----ERW-------------------------IEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~-------------------------~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
+++|.++++++.|..|.+|++.... ... -.|...|.|+.| -|+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhhheeec
Confidence 9999999999999999999998443 000 012223333333 25788888
Q ss_pred eeCCcEEEEEecC-C------------CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE--EE
Q 008005 460 LINQEIHLWSIES-D------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV--LA 524 (581)
Q Consensus 460 ~~d~~i~iwd~~~-~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~ 524 (581)
+.++.|..|.... . ......+......++.+...+ .+.++.||.|...|.|++||++..++. .+
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTT 346 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence 8899999998721 1 123445555666677777777 788999999999999999999887663 22
Q ss_pred ecc--CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 525 LAG--HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 525 ~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+.. ....|...+|+.|+ .+|+...+|++|.-||.-
T Consensus 347 l~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 221 24679999999999 799999999999999853
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-20 Score=184.06 Aligned_cols=245 Identities=18% Similarity=0.261 Sum_probs=201.6
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE-EEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-LHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
-..+|.+++|+.+.+.||.+-.+|.|.+|++..+=. ...+.++ +..|.+++|. ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 456799999999999999999999999999987643 3344444 6789999999 567899999999999999998887
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee----eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE----RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
........+.|.+++.+|.+..++.||.||.+..++...+.. .+....+.+.+++|+|++..++.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 777777778999999999999999999999888888887772 2234468899999999999999999999999999
Q ss_pred ecCCCceeE----EEeccc-cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcE
Q 008005 470 IESDPKLVS----RYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHM 544 (581)
Q Consensus 470 ~~~~~~~~~----~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 544 (581)
...+..... ...... ....+....+. ....|++|..-|+|.+||...+.++..+..|.+.|.+++.++++ ..
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~-d~ 259 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE-DR 259 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC-Ce
Confidence 988743331 111112 12222222232 45689999999999999999999999999999999999999998 69
Q ss_pred EEEEECCCcEEEecCCcccc
Q 008005 545 LASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~~~ 564 (581)
++++|.|+.|..+...+.+.
T Consensus 260 vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEccCCCceEEEEecCCcc
Confidence 99999999999998877644
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=182.85 Aligned_cols=240 Identities=19% Similarity=0.306 Sum_probs=184.2
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEE------------------EecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKH------------------RLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRR 343 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~------------------~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~v 343 (581)
.|+|+|.|+.|..|.|||+.-...+.+.. ...+|+..|.+++|+.+ .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999986332221111 13479999999999874 467999999999999
Q ss_pred EEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 344 WDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
||+.+|++..++..|...|.++.|+| ....|++|+.|++|.+.|.+... -....|.-+
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-----------~s~~~wk~~---------- 329 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-----------NSGKEWKFD---------- 329 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-----------ccCceEEec----------
Confidence 99999999999999999999999999 45678999999999999987411 111122222
Q ss_pred CeEEEEECCCCeeeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 423 AAILLLDREANFERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
+.|-.++|.|. ...+++++.||.++-+|++...+++.++..|...+..+... .....+
T Consensus 330 -------------------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n--~~~p~~ 388 (463)
T KOG0270|consen 330 -------------------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN--IQTPGL 388 (463)
T ss_pred -------------------cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec--CCCCcc
Confidence 23666777774 34677788899999999999889999999999987665443 445578
Q ss_pred EEEEeCCCcEEEEeCCCCce--EEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 502 IASGSEDSQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+++++.|+.|++|++..... +..-.-.-+...|+++.|+-+..++.||..+.++|||+.+...
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999999999999764433 2211111245678889998888999999999999999987654
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.7e-23 Score=202.35 Aligned_cols=237 Identities=17% Similarity=0.302 Sum_probs=204.5
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+... ..+..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 455679999999998778899999999999999998644 34456899999999999999999999999999999999
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
++.++.++++.+|...+.++.|+|-+.+++.|+.|+.+++||++..-+...+..|...+..+.|+|+|++++.++.|.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 99999999999999999999999999999999999999999998544444444477789999999999999999999999
Q ss_pred EEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE
Q 008005 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
++||...+. ..+..|...+.++.|+|..-.++.|+.|+++++||+++- ..+........ .+++..+.+++..++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~---~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETD---GVRSLAFNPDGKIVL 254 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccC---CceeeeecCCceeee
Confidence 999999888 456679999999999999999999999999999999875 44444443333 366666699999999
Q ss_pred EEeCCC
Q 008005 504 SGSEDS 509 (581)
Q Consensus 504 sgs~dg 509 (581)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.4e-22 Score=208.33 Aligned_cols=284 Identities=19% Similarity=0.268 Sum_probs=219.2
Q ss_pred EEEEcCCCC-EEEEE----------eCCCeEEEEEcccCCe---eeEEEEecCCCCCEEEEEeCCCCCe----EEEeeCC
Q 008005 277 FLQFSHDGK-YLASS----------SKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQ----LLTCGQE 338 (581)
Q Consensus 277 ~l~~s~~g~-~lasg----------s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~----l~s~~~d 338 (581)
.++|+|++. ++|+| +.+.++.||.+..... ++....+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 578999887 66655 3355667776542211 12222222 3345789999997665 8889999
Q ss_pred CcEEEEEcCC---C---cEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeEEeec--cCccccEEEEEE
Q 008005 339 EAIRRWDVNS---G---ECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAI 409 (581)
Q Consensus 339 g~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~i~~ 409 (581)
|.|.+||... + ..+.....|.+.|..+.|++... .+++|+.||.|.|||+..-+..... ......|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999865 2 24566778999999999999655 8999999999999999753322211 223457999999
Q ss_pred eeCC-CEEEEEEcCCeEEEEECCCCe--eeEEec--CCceEEEEECCCCC-EEEEEeeCC---cEEEEEecCCCceeEEE
Q 008005 410 TDDG-KRIISICREAAILLLDREANF--ERWIEE--EEVITSFSLSKDNK-YLLVNLINQ---EIHLWSIESDPKLVSRY 480 (581)
Q Consensus 410 ~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~--~~~i~~~~~sp~~~-~l~~~~~d~---~i~iwd~~~~~~~~~~~ 480 (581)
+..- ..|++++.+|.+.|||++..+ ..+..+ ...+..++|+|+.. .+++++.|. .|.+||++....+++.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 9754 467788889999999999886 222222 24477899999764 566666654 69999999888899999
Q ss_pred eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 481 ~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.+|...+..+.+| ..|..++++++.|+.|.+|+.++++.+..+....+.+..+.|+|..+.+++.++-||.|-|+.+.
T Consensus 250 ~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 250 EGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 9999986665554 55669999999999999999999999999998889999999999998899999999999999998
Q ss_pred ccc
Q 008005 561 QIN 563 (581)
Q Consensus 561 ~~~ 563 (581)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 665
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=183.51 Aligned_cols=273 Identities=15% Similarity=0.217 Sum_probs=214.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.|..++|-|||..|+.+. +..+.|||...+ ....++++|.+.|+|++|+.||+.+++|+.|..|.+|+-.-...+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 789999999999887775 446999999987 556889999999999999999999999999999999985432222
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.+ .|.+.|.|+.|+|-...|++++-. ..-+|....+.+..... ..++.+++|..||++++.|-.+|+|.+-+....
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks--s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS--SSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhh--heeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 22 678899999999998888888753 46688876555443333 347999999999999999999999999876554
Q ss_pred eeeEE----ecCCceEEEEECCCC-----CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE
Q 008005 434 FERWI----EEEEVITSFSLSKDN-----KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 434 ~~~~~----~~~~~i~~~~~sp~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
....+ +.+++|.+++|+|.. ..+++.....++.+|.+... .+..-. .-.+.-.+..+-++|.|+..
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r---~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKDR---ALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eecccc---cCCCCchhheeccCCcEEEE
Confidence 42222 356789999999953 46788888888888888763 221111 11111223333679999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
|+.|+.+.+|- +.|-.+.++......|+.++..|++ +.++.|+.||+|-.|++-..
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHHh
Confidence 99999999997 5677788887788899999999999 79999999999999987543
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=171.51 Aligned_cols=205 Identities=15% Similarity=0.259 Sum_probs=167.5
Q ss_pred cccccCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcccC-------------CeeeEEEEecCCCCCEEEEEeCC-CCCe
Q 008005 268 LEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-------------GQVSLKHRLSGHRKPVFTVSWSP-NDHQ 331 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp-~~~~ 331 (581)
.-+|.+.|+.+.-++-+ .+.|+-+..|.|.||++... .....+.++.+|...=++++||| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888888755 46667788899999998521 23456778899999999999999 2335
Q ss_pred EEEeeCCCcEEEEEcCCCcEE---EEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEE
Q 008005 332 LLTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRIS 405 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~ 405 (581)
|++|..-+.|++|...+|.-. ..+.+|...|-.++|+|. ...|++|+.||+|+|||++.+. .......|...|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 888888899999999887542 345679999999999994 5678899999999999998762 2222356667999
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecC
Q 008005 406 DMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~ 472 (581)
.|.|+..-.+|++|+.||++++||+++-+ ..+..|..+|+++.|+| +...|++++.|..|.+||+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999998899999999999999999866 47788999999999999 456788889999999999964
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.5e-20 Score=165.36 Aligned_cols=265 Identities=18% Similarity=0.287 Sum_probs=191.0
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-----EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEE
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSIC 384 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~ 384 (581)
..+++|.+.|++++|+.||++|+|++.|++|++|+++.-. +++. ...-+..+.+.|.||.+-++... ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3578999999999999999999999999999999987632 2211 11223567899999987766554 455899
Q ss_pred EEeCCCCe-----E-------EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE-ecCCceEEEEECC
Q 008005 385 LWDLDGRE-----L-------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-EEEEVITSFSLSK 451 (581)
Q Consensus 385 vwd~~~~~-----~-------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~i~~~~~sp 451 (581)
+|.+..++ . ..+...|...+.++-+...+.++++++.|..|.+|+++......+ .....-+..+.||
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 99874211 1 123334555677788888899999999999999999996553333 3344566788999
Q ss_pred CCCEEEEEeeCCcEEEEEecCCC-------ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC----C-
Q 008005 452 DNKYLLVNLINQEIHLWSIESDP-------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT----G- 519 (581)
Q Consensus 452 ~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~----~- 519 (581)
+|+++++++-.-.|++|..--.. ..+..+++|... +.+..++++...+++.+.||+++|||++- +
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999873211 234457788876 34444599999999999999999999642 1
Q ss_pred --ceEEEe----ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc------ccCCCceEEecCCCC
Q 008005 520 --ELVLAL----AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH------RDQSNGIVHHCNGRI 581 (581)
Q Consensus 520 --~~~~~~----~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~------~~~~~~~~~~~~G~~ 581 (581)
+.+... ..-.+....++.+|.| ..|+. +....++++..++++... ......+.|+++|+.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 222222 1122334489999999 45554 445689999998877543 333678889998873
No 153
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-21 Score=183.44 Aligned_cols=296 Identities=22% Similarity=0.326 Sum_probs=236.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
...|.+|.+.|..|.|+..|..|++|+.|..|.+||+.... ....-..+|...|....|-| +...+++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 45678899999999999999999999999999999998654 33444568999999888988 457899999999999
Q ss_pred EEEcCC-CcE--EEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeEEe---eccCcc---ccEEEEEEeeC
Q 008005 343 RWDVNS-GEC--LHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELES---WKGQKT---LRISDMAITDD 412 (581)
Q Consensus 343 vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~---~~~~~~---~~i~~i~~~~~ 412 (581)
+=.+.. +.+ ...+..|.+.|..++.-|+.. .|++++.|+.+.-+|++...... ....+. ....+++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887643 333 345567888999999988654 58899999999999997533211 222222 25678888887
Q ss_pred CC-EEEEEEcCCeEEEEECCCCeee--------EE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---
Q 008005 413 GK-RIISICREAAILLLDREANFER--------WI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--- 474 (581)
Q Consensus 413 ~~-~l~~~~~dg~i~i~d~~~~~~~--------~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--- 474 (581)
.. .+++++.|..+++||.+.-... +. ...-.|++++|+.++.-|++...|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 65 7899999999999998754311 11 234569999999988888888999999999543211
Q ss_pred --------ceeEE-EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEE
Q 008005 475 --------KLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 475 --------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 545 (581)
..++. |++|....++-..-||.|...|+++|+.-|.|.||+-.+++.+..+.+-...|+|+.-+|.-| +|
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-vL 451 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-VL 451 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-hh
Confidence 22333 899999888777789999999999999999999999999999999998777999999999996 99
Q ss_pred EEEECCCcEEEecCCccc
Q 008005 546 ASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~ 563 (581)
||+|-|..|+||...+.+
T Consensus 452 AsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hccCCccceeeecCCccc
Confidence 999999999999985433
No 154
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=195.16 Aligned_cols=296 Identities=15% Similarity=0.263 Sum_probs=229.1
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
+.+..|.||..+|+|+.|...|.++++|+.|..|+||..++. .+.....||.+.|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 345567899999999999999999999999999999998766 56788999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe----eccCccccEEEEEEeeCCCEEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----WKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~ 418 (581)
+|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-..... ........+.++.+...+..+++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999999999999999854 77889999999987211111 11122235677788888889999
Q ss_pred EEcCCeEEEEECCCCeeeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 419 ICREAAILLLDREANFERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
++.|+.-..|...... .+...+.-+..+.+ ..+.+++-.+-.+.+|++.++ .......+|....+++....+
T Consensus 334 gs~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf-- 406 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF-- 406 (1113)
T ss_pred ccCCcccccchhhHhh----hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--
Confidence 9999887777654322 01111111111112 245556666788999999988 788888999999888877543
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccCCCce
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGI 573 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~ 573 (581)
+.....+++.||...|||+-.|.++..+.-..+.+..-+|+++| ..++...+-|.+.|.....++.....+.+.+
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~s~k~ak~dqf 481 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSKSQKKAKYDQF 481 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCccccccccceE
Confidence 44667889999999999999998876554334567777899999 6777777779999998887776555444333
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=5.6e-20 Score=179.49 Aligned_cols=242 Identities=19% Similarity=0.318 Sum_probs=187.8
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
...++++++|++.|+|++|+.||+.+|+|+.|..|.+|+-.-.+.+ -..|.+.|.|+.|+|-...|++|+-. ..
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kYSH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KYSHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----eeccCCeeeEeecCchHHHhhhcchh-hc
Confidence 4468899999999999999999999999999999999987644322 23699999999999999999999865 57
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE--eeccCccccEEEEEEeeCC-----C
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDG-----K 414 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~i~~~~~~-----~ 414 (581)
-+|..+..... .. .....+.+++|..||.+++.|-.+|+|.+-+-.+.+.. ........+|.+++|+|.. .
T Consensus 117 glWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 117 GLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred cccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence 78886544322 11 22457889999999999999999999999876543332 3334556789999999863 4
Q ss_pred EEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008005 415 RIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
.+++.....++.+|.+.... ......+-...|+.+-++|.++++|+.|+.+++|.-+. ..+.+....... |...
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~~D~W---IWtV 269 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGEQDSW---IWTV 269 (1081)
T ss_pred eEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeecccccee---EEEE
Confidence 67788888888888887765 22334455678899999999999999999999997654 344444443333 3334
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeC
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
...|++++++.|+.||+|..|++
T Consensus 270 ~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 270 QAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEccCCceEEEEEccCeeehhhh
Confidence 44899999999999999999975
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=6.8e-21 Score=166.38 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=198.1
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
|..+...|++|.+.|+|+.|-.+++ |.+|...|.|++|++.+... ...+. .|...|+.+.--|+ ..+.+-+.|+
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---LPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCcc---chhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 5567788889999999999988775 88999999999999987633 23344 57778999998887 5788899999
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEec-----CCC----eEEEEeCCC-cEEEEeCCCCeEEeec----cCccccEE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFL-----DGG----GIFAGMTDK-SICLWDLDGRELESWK----GQKTLRIS 405 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~sg~~dg-~i~vwd~~~~~~~~~~----~~~~~~i~ 405 (581)
.+.+|++.-+..+..- .-.+.++.|.+ +++ .++.-+... .+.+-|.......... ....+.+.
T Consensus 78 ~L~lw~ia~s~~i~i~---Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIH---SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEEe---eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 9999999876544322 22333333332 111 111111100 0112222111111111 12223455
Q ss_pred EEEEee-CCC--EEEEEEcCCeEEEEECCCCe------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 406 DMAITD-DGK--RIISICREAAILLLDREANF------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 406 ~i~~~~-~~~--~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
+..+.- ++. .+++|..+|.+.+||+.++. .....|..++.++.+.+....=++|+.+..+..|++
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence 555332 222 46778899999999999863 233467889999999887666677888888999988
Q ss_pred cCCCc--eeE-EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 471 ESDPK--LVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 471 ~~~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
..... .+. ........+..++. -||++.+|+++.|+.|+||+.++..++..++-|.+.|++++|+|+. .++|+
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrI---RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lmAa 310 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRI---RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELMAA 310 (323)
T ss_pred ccccCcccccceEEecCCCccceEE---ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chhhh
Confidence 65311 111 11111222222332 6899999999999999999999999999999999999999999997 59999
Q ss_pred EECCCcEEEecC
Q 008005 548 ASDDRTIRIWGL 559 (581)
Q Consensus 548 ~s~Dg~I~iW~~ 559 (581)
+|.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=8.5e-20 Score=161.89 Aligned_cols=273 Identities=15% Similarity=0.234 Sum_probs=202.7
Q ss_pred ccceeccCCCCCceeeccCCCCc---ccccc--cc---eeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCC
Q 008005 235 DSCLFHNTSDSDFSLYSDHQCGR---NRIPS--QT---LQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDG 305 (581)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~---~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~ 305 (581)
.+.++....++.+.+|+-..... ..+.. .+ .+--.+|.-.|..+.|-| |..++.+++.|.+++|||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 34567788888888886443321 11111 11 122347888999999999 66689999999999999997653
Q ss_pred eeeEEEEecCCCCCEEEEEeCC---CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCC
Q 008005 306 QVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDK 381 (581)
Q Consensus 306 ~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg 381 (581)
....++ ..+.|..-+|+| ...++|+|..+-.|++-|+.+|.+.+++.+|...|.++.|+|...+ |++|+.||
T Consensus 136 ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 136 ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 333333 456788888888 3457888888999999999999999999999999999999997766 67899999
Q ss_pred cEEEEeCCC--CeEE-------------eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEec-----C
Q 008005 382 SICLWDLDG--RELE-------------SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE-----E 441 (581)
Q Consensus 382 ~i~vwd~~~--~~~~-------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~ 441 (581)
.|++||++. +... .....|.+.+..++|+.++.++++++.|..+++|+..++....... +
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence 999999963 2221 1233556789999999999999999999999999998876222111 1
Q ss_pred ---CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 442 ---EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 442 ---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+.-..+. +-+...++.--.++.+.++++-.+ ..++.+.+|-. .+.++++.++-+...+|..|+.|+.|-.
T Consensus 292 ~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k---~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 292 QTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLK---RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccc---eeeEEeecCchhhhhccccCCccccccc
Confidence 1111122 233444444455689999998887 78888888843 3667777888888999999999999975
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-20 Score=175.06 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=202.9
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 274 EVWFLQFSHDGK-YLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
.|.++.|+.... .+++.+.|..+++|.-... ..+.......+. .-.|++......|+++||..++|+|||+....+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 388999988764 2334457888999976532 123333444443 234554445568999999999999999998888
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-cccEEEEEEeeCCCE-EEEEEcCCeEEEEE
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKR-IISICREAAILLLD 429 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d 429 (581)
.+.++.|...|+++.|+-...+|++++..|.|.+..+.++......... ...|.-+.|++..+. |.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 8899999999999999999999999999999999999876655544444 345678999998765 56778999999999
Q ss_pred CCCCe---eeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE
Q 008005 430 REANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
+.... .....|..+...++|+|. ..+|++.+.|..|.+||.... .....+..... +..+.++++|.+|++|
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~P----lstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHP----LSTVAFSECGTYLCAG 268 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCC----cceeeecCCceEEEee
Confidence 98876 333468888999999994 567778899999999999876 44444433222 4455569999999999
Q ss_pred eCCCcEEEEeCCC-CceEEEeccCCCCEEEEEEcCCC
Q 008005 506 SEDSQVYIWHRYT-GELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 506 s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
+..|.|+.||++. ..++..+..|...|++++|-|.-
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999875 46788999999999999998853
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.3e-20 Score=176.38 Aligned_cols=257 Identities=12% Similarity=0.195 Sum_probs=202.2
Q ss_pred HHHHccccceecc--CCCCCceeeccCCCCccccc-ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC
Q 008005 229 ALDVQRDSCLFHN--TSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG 305 (581)
Q Consensus 229 ~~~~q~~~~~~~~--~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~ 305 (581)
.+.||+...+... ..+..+.+|.. |+. .| .+.+..+.+. .-.|++......|+++|+..+.|+|||+...
T Consensus 39 s~~w~~~n~lvvas~~gdk~~~~~~K--~g~--~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k- 111 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASMAGDKVMRIKEK--DGK--TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK- 111 (673)
T ss_pred eeeccccceEEEeecCCceeEEEecc--cCC--CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-
Confidence 4567766644433 34445566642 222 11 1223333433 3345554455589999999999999999843
Q ss_pred eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCe-EEEEeCCCcE
Q 008005 306 QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGG-IFAGMTDKSI 383 (581)
Q Consensus 306 ~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~sg~~dg~i 383 (581)
.+.+.+++|...|+++.++-.+.|||+++..|.|.|..+.++.....|... ...|.-+.|++..+. |.+++.+|.|
T Consensus 112 --l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 112 --LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred --HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 466788999999999999999999999999999999999999888888766 445668899997665 5678899999
Q ss_pred EEEeCCCC-eEEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe
Q 008005 384 CLWDLDGR-ELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 384 ~vwd~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
.+||+.+. ....+...|..+...|+|+|.. ..|++.+.|..|.+||..... ...+....+...++|+++|.+|++|.
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 99999864 4567778888899999999965 467888999999999999776 56667788899999999999999999
Q ss_pred eCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008005 461 INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 461 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
..|.|..||++..+.++.....|...+..+.+..
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999999999999899999999998866665544
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5e-20 Score=178.04 Aligned_cols=244 Identities=15% Similarity=0.225 Sum_probs=191.1
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCCcEEEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLW 386 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vw 386 (581)
.+...+.+|++.|.+++..|.|.+|++|+.||+|+||.+.+|.|++++... ..|.|++|+|.+.. +++...+..+.+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 345568899999999999999999999999999999999999999988654 48999999996553 3333333334444
Q ss_pred eCCCC-----------------------eEE--------------eeccCccccEEEEEEeeCCCEEEEEEcC---CeEE
Q 008005 387 DLDGR-----------------------ELE--------------SWKGQKTLRISDMAITDDGKRIISICRE---AAIL 426 (581)
Q Consensus 387 d~~~~-----------------------~~~--------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~ 426 (581)
+..-+ .+. .....+...|+.+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32100 001 1122334578999999999999998764 4688
Q ss_pred EEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE
Q 008005 427 LLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 427 i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
|.++.... ..+....+.+.++.|+|...+|++++ ...|++||+... .+++.+...... +.....+|.|..|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~kw---iS~msihp~GDnli~ 624 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSKW---ISSMSIHPNGDNLIL 624 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH-HHHHHHhcCCee---eeeeeecCCCCeEEE
Confidence 88887766 44456778899999999999999887 678999999875 666655544333 455555899999999
Q ss_pred EeCCCcEEEEeCCCC-ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 505 GSEDSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 505 gs~dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|+.|+.+..||+.-. ++..++..|...+++|+||+.-+ ++++|++||++.|+.
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 999999999998744 67788999999999999999984 999999999999975
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.4e-20 Score=164.19 Aligned_cols=243 Identities=12% Similarity=0.120 Sum_probs=180.6
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 399 (581)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|.+++|++||+.|++++.|..|.+||+..+.+......
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 68999999999999999999999999999998889999999999999999999999999999999999987765544443
Q ss_pred ccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeEEecC------CceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 400 KTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEE------EVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
. .+|....|+|.....+.++ .+..-.+.++.......+... ....+..|.+.|+++++|...|.+.+||..+
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 3 3899999998654433332 333344445544443333221 1123346889999999999999999999998
Q ss_pred CCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-------CceE--EEecc--CCCCEEEEEEcCCC
Q 008005 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-------GELV--LALAG--HSGSVNCVSWNPAN 541 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-------~~~~--~~~~~--h~~~v~~l~~~p~~ 541 (581)
. +++..++... ...+....++..|.+++.-+.|..|+.|++.. +++. +.+.. ....-++++|+.+|
T Consensus 185 ~-e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 185 L-ECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred h-eeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 7 7777776554 23355555588999999999999999999752 1111 12211 12344678899999
Q ss_pred CcEEEEEECCCcEEEecCCcccccc
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
..+.++...-..++||.-..|.+..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred cEEEeccccceeEEEEecCCcceee
Confidence 5444444456789999998887653
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.5e-19 Score=166.50 Aligned_cols=211 Identities=20% Similarity=0.297 Sum_probs=173.8
Q ss_pred ecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCe----eeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCc
Q 008005 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~ 340 (581)
.+.||+++|..++|+| +...||+||.|.+|.||++..++. ......+.+|...|..++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 666899999999999999975532 2456778999999999999994 467999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-cccEEEEEEeeCCCEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISI 419 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~ 419 (581)
|.+||+.+|+.+.++. |...|+++.|+.||.+|++++.|..|++||.+++++......| ......+.|..+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988887 9999999999999999999999999999999998887766433 3456667788888855555
Q ss_pred E---cCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeE
Q 008005 420 C---REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVS 478 (581)
Q Consensus 420 ~---~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~ 478 (581)
. ++..+-+||..+.. .......+.|.---|++|.+.++.++. |+.|+.|.+......+.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence 3 46789999987765 444556667777778999888777665 89999999988643333
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=169.53 Aligned_cols=253 Identities=12% Similarity=0.214 Sum_probs=196.6
Q ss_pred EEEEecCCCCCEEEEEeCCCC--CeEEEeeCCCcEEEEEcCCC----cEEEEEecCCCeEEEEEEec-CCCeEEEEeCCC
Q 008005 309 LKHRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRWDVNSG----ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDK 381 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg 381 (581)
.......+.+.|++++|+|.. +++++|..-|+|-+||+.+. .-+..+..|..+|.++.|+| +...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 334556688999999999944 57889999999999999532 34567788999999999999 567899999999
Q ss_pred cEEEEeCCCCeEEeeccC--ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCC-CCE
Q 008005 382 SICLWDLDGRELESWKGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKY 455 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~ 455 (581)
+|++-|+++.....+... ....+.++.|+.+...++.+..-|...+||+++.. ..+.-|...|.+++++|- ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987665555444 34467888899988899999998999999999876 445567779999999995 457
Q ss_pred EEEEeeCCcEEEEEecCCCc---eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC----CCceEEEeccC
Q 008005 456 LLVNLINQEIHLWSIESDPK---LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY----TGELVLALAGH 528 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~----~~~~~~~~~~h 528 (581)
|++++.|++.+|||++.... +.-....|.. .+.+++++|.+-.|+|.+.|..|+|||.. ...+...+. |
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccc---eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-c
Confidence 88999999999999986421 1122223443 46667779988889999999999999973 334444443 3
Q ss_pred CC------CEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc
Q 008005 529 SG------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 529 ~~------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
.. ......|.|+. .++++|-.-..|-|+|-+.+++..
T Consensus 414 n~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred cCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCEEee
Confidence 22 23456799998 799999999999999999888443
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=163.06 Aligned_cols=270 Identities=15% Similarity=0.233 Sum_probs=199.0
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEEEEEcCCCcEEEEEe--cCC-
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYE--KTG- 359 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~- 359 (581)
..+|++-..|.|++||..++ .....++++...++.+.|.. ....+.+|+.||+|++||+++......+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 46888889999999999876 45577888888888999976 45679999999999999999866544433 333
Q ss_pred CeEEEEEEecCCCeEEEEeC----CCcEEEEeCCCCe--EEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCC
Q 008005 360 VGLISCGWFLDGGGIFAGMT----DKSICLWDLDGRE--LESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREA 432 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+..+++..-.++.+++|+. +-.|.+||++..+ +..+...|...|+++.|+|. .+.|++|+.||-|.+||++.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 45566665556677777753 6689999997643 56677778889999999995 57899999999999999987
Q ss_pred Ce-----eeEEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEecc----------ccceeEEEeeecC
Q 008005 433 NF-----ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGH----------KRARFVIRSCFGG 496 (581)
Q Consensus 433 ~~-----~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~i~~~~~~ 496 (581)
.. ...+.+...|.++.|..++ +.+.+-+......+|++..+. ....+... ....+.|.... +
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~ 275 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHS-P 275 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeeccc-C
Confidence 65 4566778889999998877 457788889999999998874 33332221 11233444433 3
Q ss_pred CCCcEEEEEeC-CCcEEEEeC---CC---CceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 497 FEQAFIASGSE-DSQVYIWHR---YT---GELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~-dg~I~iwd~---~~---~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.++...+.++. -|...++-+ .+ .+.+..+.+ |...|.++.|...+ .++.|||.||.+.+|...
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEecC
Confidence 34444444443 555555543 22 344566666 77788999998877 799999999999999953
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=172.40 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=156.1
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
-+.|.||++.|+|++|+.+|.+|++||.|-.+.|||.-..+ .....-.+|...|.++.|-| ++..+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 45789999999999999999999999999999999987432 23344579999999999999 667899999999999
Q ss_pred EEEcCCC----------cEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEe--------ec--cCcc
Q 008005 343 RWDVNSG----------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELES--------WK--GQKT 401 (581)
Q Consensus 343 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~--------~~--~~~~ 401 (581)
++|+... .....+..|...|..++-.|++ ..+.+++.||+|+-+|++...... .. ...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999842 3345566777888888888888 678999999999999997522110 00 1111
Q ss_pred ccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-------------------eeEEe--c-----------CCceEEEE
Q 008005 402 LRISDMAITDDG-KRIISICREAAILLLDREANF-------------------ERWIE--E-----------EEVITSFS 448 (581)
Q Consensus 402 ~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-------------------~~~~~--~-----------~~~i~~~~ 448 (581)
-...++.++|.. .+|++|+.|...++||.+... ...+. | ...++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 256788899864 578899999999999943211 00110 0 01256678
Q ss_pred ECCCCCEEEEEeeCCcEEEEEecC
Q 008005 449 LSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 449 ~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|+|+|.-|++.-....|+++|+..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecC
Confidence 999999988888778888888754
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.3e-20 Score=177.76 Aligned_cols=266 Identities=17% Similarity=0.232 Sum_probs=188.1
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc-----cCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK-----EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
..++..|.+.|..++|.|....|++|+.||++++|+++ ....+..+.++.+|.++|.|++..+++..+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34788899999999999999999999999999999993 2334678889999999999999999999999999999
Q ss_pred cEEEEEcCCC----------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc-ccEEEEE
Q 008005 340 AIRRWDVNSG----------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~i~ 408 (581)
+|+.|++... .....+.+|.+.++.+++++....|++++.||+++.|+........+..... +....+.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence 9999965421 2345677999999999999999999999999999999986655422222111 1222333
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008005 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
+.... .+....+.....+++.... . ...+.++.-... .+... ..
T Consensus 447 ~~ss~--~a~~~~s~~~~~~~~~~~e--------v------------------~s~~~~~~s~~~-------~~~~~-~~ 490 (577)
T KOG0642|consen 447 RTSSR--PAHSLASFRFGYTSIDDME--------V------------------VSDLLIFESSAS-------PGPRR-YP 490 (577)
T ss_pred eccch--hHhhhhhcccccccchhhh--------h------------------hhheeeccccCC-------Ccccc-cC
Confidence 32111 1111111111111111100 0 001111111100 00000 00
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+....+.|.+.+.+++.+|+.|+++|..+++++.....|...++++++.|+|+ +|++++.||.|++|.+....+...
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred ccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeec
Confidence 122223377888999999999999999999999999999999999999999995 999999999999999987665543
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.6e-19 Score=156.34 Aligned_cols=265 Identities=17% Similarity=0.260 Sum_probs=201.5
Q ss_pred CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCC-------CcEEEEEcCCC---------cEEEE
Q 008005 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQE-------EAIRRWDVNSG---------ECLHV 354 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~ 354 (581)
.|+.|.+.+++..+..-....+..|.+.|+.++-+| +...|+|+..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 467888888876655445567788999999999999 44556665442 24789988643 22333
Q ss_pred Ee-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-Ee-e----ccCccccEEEEEEee--CCCEEEEEEcCCeE
Q 008005 355 YE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ES-W----KGQKTLRISDMAITD--DGKRIISICREAAI 425 (581)
Q Consensus 355 ~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~-~----~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i 425 (581)
+. .+-+.+.|+.|.|++..+++-. |..|.+|++..... .. . ...+....++-+|+| +++.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 33 3445899999999999988776 88999999965332 11 1 112234677888998 5665554 578999
Q ss_pred EEEECCCCee---eEEecCCceEEEEECCCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 426 LLLDREANFE---RWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~~---~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
..||+++... ..-.|...+..+.|+|+.. +|++++.||.|++||.+....++..+.+|...++.+++- +...++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--CccceE
Confidence 9999998772 3346777899999999766 577788899999999999889999999999988777654 456789
Q ss_pred EEEEeCCCcEEEEeCCCC-----------------------------ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCC
Q 008005 502 IASGSEDSQVYIWHRYTG-----------------------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
|.+|+.|..|.+|...+- ..+.++..|+..|++++|+.-.|.++|+-|.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 999999999999964321 123467789999999999999999999999999
Q ss_pred cEEEecCC
Q 008005 553 TIRIWGLD 560 (581)
Q Consensus 553 ~I~iW~~~ 560 (581)
.+.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 99987664
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=162.12 Aligned_cols=241 Identities=17% Similarity=0.186 Sum_probs=187.1
Q ss_pred EEecCCCCCEEEEEeCCCC--CeEEEeeCCCcEEEEEcCC----------------CcEEEEEecCCCeEEEEEEec-CC
Q 008005 311 HRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRWDVNS----------------GECLHVYEKTGVGLISCGWFL-DG 371 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~ 371 (581)
.....|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+++.++.+|...=+.++|+| ..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445678888888777744 4556667789999999852 346778889988889999999 33
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEe---eccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe----eeEEecCCc
Q 008005 372 GGIFAGMTDKSICLWDLDGRELES---WKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF----ERWIEEEEV 443 (581)
Q Consensus 372 ~~l~sg~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~ 443 (581)
..|++|..-+.|++|...++.... -...|...|.+++|+|.. ..|++++.||+|+|||++.+. .....|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 458899888999999987655432 123366789999999964 578899999999999999874 455788999
Q ss_pred eEEEEECCCCCEEEEEeeCCcEEEEEecCC--CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008005 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESD--PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
|+.+.|+.+..+|++|+.||+++|||++.- .+++..|+-|..+++.+.+. +.+...|++++.|.+|.+||+....-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~--p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH--PHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec--cccCceEEeccCCCcEEEEEeeccCC
Confidence 999999999889999999999999999863 36788999999996665543 23567889999999999999753211
Q ss_pred -----------E-----EEeccC--CCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 522 -----------V-----LALAGH--SGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 522 -----------~-----~~~~~h--~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
+ .-+--| ...|..+.|++.-+.++++.+.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 0 111224 3468899999998889999999983
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=4e-17 Score=167.70 Aligned_cols=291 Identities=29% Similarity=0.467 Sum_probs=227.5
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEe-CCCCC-eEEEeeC-CCcE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSW-SPNDH-QLLTCGQ-EEAI 341 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~-sp~~~-~l~s~~~-dg~i 341 (581)
..+..|...|.++.|.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3567899999999999999999999999999999998653 2344455533 36777777 88887 5555455 9999
Q ss_pred EEEEcCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-EEEE
Q 008005 342 RRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIIS 418 (581)
Q Consensus 342 ~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~ 418 (581)
.+|+... ......+..|...+..+.|+|++..+++++. |+.+++|++...........+...+.+++++|++. .+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9999998 7888889999999999999999998888885 99999999987666655555777999999999998 5555
Q ss_pred EEcCCeEEEEECCCCee---eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 419 ICREAAILLLDREANFE---RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
++.|+.|++||...+.. ....+.... ...|+|++.++++++.++.+++|++.........+.+|... +....+
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~ 292 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---VLSVAF 292 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---EEEEEE
Confidence 58999999998885552 233444443 33899999899999999999999999764434444555444 333344
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEec--cCCCCEEEEEEcCCCCcEEEEE-ECCCcEEEecCCccc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALA--GHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQIN 563 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~ 563 (581)
.|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++ ..++.+ ..|+.+.+|++....
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCc
Confidence 7778888889999999999998888777665 788889999994332 344444 688999999998876
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5.5e-20 Score=165.60 Aligned_cols=243 Identities=17% Similarity=0.293 Sum_probs=184.9
Q ss_pred cccCcEEEEEEcCCC----CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEE
Q 008005 270 AHSDEVWFLQFSHDG----KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRW 344 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g----~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vw 344 (581)
.|......++|+-|. .++|.|+.-|.|+|.|+.++ ++...+.+|...|+.+.++|+ .+++++++.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 477888889997643 48999999999999999876 667888999999999999995 4789999999999999
Q ss_pred EcCCCcEEEEEe---cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee-------------------------
Q 008005 345 DVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW------------------------- 396 (581)
Q Consensus 345 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~------------------------- 396 (581)
++++..|+..+. +|.+.|.++.|++++.+|++++.|.++++|++...+....
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999998874 6889999999999999999999999999999973221110
Q ss_pred ---ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------------eeEEe----cCC--ceEEEEECCCCCE
Q 008005 397 ---KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------------ERWIE----EEE--VITSFSLSKDNKY 455 (581)
Q Consensus 397 ---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~----~~~--~i~~~~~sp~~~~ 455 (581)
...|...|.|+.|- |+++++-+-++.|..|...... ..... ... .....+|+|-++.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 01122233333333 5688888889999999873211 11111 111 2345677888999
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
|+.|...|.|++||++........-..|......++-..++.++.+|+..++|+.|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999998744333333333344455555669999999999999999999954
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.7e-18 Score=171.67 Aligned_cols=289 Identities=17% Similarity=0.242 Sum_probs=213.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEccc-CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
.|.-.++|.++||+++++|+|..||.|.+|.--. ...-.....+.-|...|.+++|+++|.+|++||..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999997543 222234466788999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee-----------ccCccccEEEEEEeeCCCEEE
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-----------KGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-----------~~~~~~~i~~i~~~~~~~~l~ 417 (581)
++ .+-+..-..+|..+.++||+...+....|+.|.+....+...... ......-.+.++++|..+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 98 555667788999999999999999999999999988743222111 111233467788999888889
Q ss_pred EEEcCCeEEEEECCCCee--eE--E---------ecCCceEEEEECCCCCEEEEEee--------CC--cEEEEEecCCC
Q 008005 418 SICREAAILLLDREANFE--RW--I---------EEEEVITSFSLSKDNKYLLVNLI--------NQ--EIHLWSIESDP 474 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~~--~~--~---------~~~~~i~~~~~sp~~~~l~~~~~--------d~--~i~iwd~~~~~ 474 (581)
..+..|.|.+||+-+... .+ . .+...++.++.+..|.++++.-. || .+++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 999999999999987651 11 1 11234677788888999988643 32 57889876542
Q ss_pred c---eeEEEeccccceeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCC----------ceEEEeccCCCCEEEEEEcCC
Q 008005 475 K---LVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTG----------ELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 475 ~---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~----------~~~~~~~~h~~~v~~l~~~p~ 540 (581)
+ +........+... +..++.++... ..++++.||.++||-+... .+...-.-|..++++++|+.|
T Consensus 442 kt~~L~T~I~~PH~~~~-vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAF-VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCcee-EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 2223333333333 33444444444 8999999999999987322 222222237889999999999
Q ss_pred CCcEEEEEECCCcEEEecCCcc
Q 008005 541 NLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
| -++++|.|++|.+||..+.
T Consensus 521 G--slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 G--SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred C--cEEEEecCCEEEEecCCCh
Confidence 9 4667788999999999983
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.4e-16 Score=163.71 Aligned_cols=288 Identities=30% Similarity=0.521 Sum_probs=224.9
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeC-CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC-eEEEeeCCC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEE 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg 339 (581)
......+..|...|.+++|+|++.++++++. |+.+++|+.... .....+.+|...|.+++|+|++. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 4567888999999999999999999998885 999999999864 45567777999999999999998 555659999
Q ss_pred cEEEEEcCCCcEEE-EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEeeCCCEE
Q 008005 340 AIRRWDVNSGECLH-VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 340 ~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.|++||...+.... .+..|.... ...|++++..+++++.|+.+++|++.... .... ..+...+.++.+.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEE
Confidence 99999998888887 677777665 44899999888999999999999997544 2333 4456689999999999999
Q ss_pred EEEEcCCeEEEEECCCCe--eeE--EecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 417 ISICREAAILLLDREANF--ERW--IEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~--~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++++.|+.+.+||..... ... ..+...+..+.+.+++..++.+ ..++.+.+|++.... .......... ...
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~---~~~ 375 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN---VLS 375 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce---EEE
Confidence 889999899999888776 222 2556678899884343566665 578899999998874 2222222221 222
Q ss_pred eeecCCCCcEEEE-EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 492 SCFGGFEQAFIAS-GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 492 ~~~~~~~~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+ .+. ..+.. +..++.+.+|+............+...+....+.+++ ..+++++.++.+++|+...
T Consensus 376 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 376 VSF-SPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEE-CCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence 233 333 44444 7899999999999888877776554788999999998 6888899999999999988
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=188.84 Aligned_cols=245 Identities=16% Similarity=0.240 Sum_probs=191.5
Q ss_pred CcEEEEEEcCCCCE----EEEEeCCCeEEEEEccc---CCeeeEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEE
Q 008005 273 DEVWFLQFSHDGKY----LASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRW 344 (581)
Q Consensus 273 ~~V~~l~~s~~g~~----lasgs~dg~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vw 344 (581)
..-+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.. +.||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999987765 88899999999999875 45556677888999999999999955 599999999999999
Q ss_pred EcCCCcEEEEEe--cCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccCc--cccEEEEEEeeCCC-EEEE
Q 008005 345 DVNSGECLHVYE--KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQK--TLRISDMAITDDGK-RIIS 418 (581)
Q Consensus 345 d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~i~~~~~~~-~l~~ 418 (581)
|+.+-+.-..+. .....|.+++|+.. ...|++++.+|.+.|||++..+.......+ ...+..++|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998755433331 24578999999874 445778889999999999876433322222 23588999999864 4556
Q ss_pred EEcC---CeEEEEECCCCe---eeEEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 419 ICRE---AAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 419 ~~~d---g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++.| -.|.+||++... ..+..|...|.++.|++.+ .++++++.|+.|.+|+..++ +.+..+.......+.+.
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeee
Confidence 6554 369999998765 4556899999999999955 89999999999999999997 78888877555555554
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCc
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGE 520 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~ 520 (581)
+| ..+-..+++++-||.|-||.+..+.
T Consensus 304 w~--pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WC--PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ec--CCCcchhhhheeccceeeeeeecCC
Confidence 44 4455689999999999999987654
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=6.7e-17 Score=160.30 Aligned_cols=269 Identities=13% Similarity=0.152 Sum_probs=180.7
Q ss_pred EEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCcEEEEEcC-CCcE--EEEEecCCCeE
Q 008005 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVN-SGEC--LHVYEKTGVGL 362 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i~vwd~~-~~~~--~~~~~~~~~~v 362 (581)
.++...++.|.+|++.+.+.+.....+. +.+....++++|++++|++++ .++.|.+|++. +++. ..... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 3444678999999997555555666664 345577899999999987764 47889999997 3433 22222 23356
Q ss_pred EEEEEecCCCeEEEEeC-CCcEEEEeCCC-CeE---EeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCe-e
Q 008005 363 ISCGWFLDGGGIFAGMT-DKSICLWDLDG-REL---ESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-E 435 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~-dg~i~vwd~~~-~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~ 435 (581)
..++++|+++.+++++. ++.|.+|+++. +.. ..... .......++++|+++++++++ .++.|.+||+.+.. .
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 78999999999888764 88999999963 211 11111 122467788999999986655 56999999997632 1
Q ss_pred e-------EEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC---ceeEEEeccc----cceeEEEeeecCCCCc
Q 008005 436 R-------WIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP---KLVSRYKGHK----RARFVIRSCFGGFEQA 500 (581)
Q Consensus 436 ~-------~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~---~~~~~~~~~~----~~~~~i~~~~~~~~~~ 500 (581)
. ..........+.|+|++++++++.. ++.|.+|++.... ..+..+.... ...+... +.++|+++
T Consensus 162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD-IHITPDGR 240 (330)
T ss_pred cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee-EEECCCCC
Confidence 1 1123445678999999999988876 8999999997421 2233332211 1112222 33389999
Q ss_pred EEEEEeC-CCcEEEEeCCCCceEEEeccC---CCCEEEEEEcCCCCcEEEEEE-CCCcEEEecCC
Q 008005 501 FIASGSE-DSQVYIWHRYTGELVLALAGH---SGSVNCVSWNPANLHMLASAS-DDRTIRIWGLD 560 (581)
Q Consensus 501 ~l~sgs~-dg~I~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~~l~s~s-~Dg~I~iW~~~ 560 (581)
+++++.. ++.|.+|++........+.++ ......+.++|+|. +|++++ .+++|.+|+++
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~-~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK-YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC-EEEEEEccCCcEEEEEEc
Confidence 9998865 689999998654322222222 12456889999995 555544 58999999885
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.5e-18 Score=175.38 Aligned_cols=292 Identities=17% Similarity=0.238 Sum_probs=206.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEEEEEcC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd~~ 347 (581)
+....-..+.|+|=...++++...-.|+|||.+.+..+.-...-......|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3334556678888888899998778899999987743322222222345688888865 56789999999999999642
Q ss_pred -C----CcEEEEEe-------cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee-ccCccccEEEEEEee-CC
Q 008005 348 -S----GECLHVYE-------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISDMAITD-DG 413 (581)
Q Consensus 348 -~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~i~~~~-~~ 413 (581)
+ .+.+.... +..+.-.-+.|.....+|++++.-..|+|||........- .......++++.-+. .|
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 2 22222221 1111224467888788888888889999999976554433 333334566665543 46
Q ss_pred CEEEEEEcCCeEEEEECCCCe-----eeEEecCCc--eEEEEECCCCCE-EEEEeeCCcEEEEEecCC-CceeEEEeccc
Q 008005 414 KRIISICREAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNKY-LLVNLINQEIHLWSIESD-PKLVSRYKGHK 484 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~--i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~ 484 (581)
+.+++|..||.|++||.+... ..+..|... |..+.+.+.|-- |++|+.+|.|++||++.. .........|.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999988654 455566666 999999886654 999999999999999984 12222223333
Q ss_pred cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-------CCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 485 RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-------SGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.....+++.+.+++...+|+|+. +.|+||++. |+.+..++.+ .+.+.|++|||.. -++|.|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEe
Confidence 21223556666888899999998 999999974 5555444432 3578999999988 589999999999999
Q ss_pred cCCcccc
Q 008005 558 GLDQINM 564 (581)
Q Consensus 558 ~~~~~~~ 564 (581)
...+...
T Consensus 1379 s~~k~~~ 1385 (1387)
T KOG1517|consen 1379 SCEKPRL 1385 (1387)
T ss_pred ecCCcCC
Confidence 9877654
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=4.9e-18 Score=157.35 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=199.0
Q ss_pred eeccCCCCCceeeccCCCCccc--ccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc--------c----
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNR--IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------E---- 303 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~--------~---- 303 (581)
+.....|..+.+|.-....... ..-..+..|..|..+|+++.|+|+|.+||+|+.+|.|.+|... +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 3456677788888644333222 3455677899999999999999999999999999999999876 2
Q ss_pred -CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 304 -DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 304 -~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
...+.....+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|..
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence 2346677888999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred EEEEeCCCCeEEeecc-------------------Ccc----ccEEEEEEeeCCCEEEEEEc----C-----CeEEEEEC
Q 008005 383 ICLWDLDGRELESWKG-------------------QKT----LRISDMAITDDGKRIISICR----E-----AAILLLDR 430 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~-------------------~~~----~~i~~i~~~~~~~~l~~~~~----d-----g~i~i~d~ 430 (581)
.+.+.+.......... .|. .-...++|+|+|..+++... . +..++++-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr 268 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR 268 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence 6666664322111000 000 12345788999998887542 2 23455554
Q ss_pred CCCe---eeEEecCCceEEEEECC------------------CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008005 431 EANF---ERWIEEEEVITSFSLSK------------------DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 431 ~~~~---~~~~~~~~~i~~~~~sp------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
.... ............+.++| -+-.+++++ .+.+++||.++.......-..|-..
T Consensus 269 k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~--- 344 (434)
T KOG1009|consen 269 KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA--- 344 (434)
T ss_pred ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeee---
Confidence 3322 22222223333333332 223344444 7789999998863333333344444
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
++-..|+++|.+++..|.||...+-.++..++-
T Consensus 345 iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 345 ITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 444556999999999999998887776665543
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=150.70 Aligned_cols=252 Identities=19% Similarity=0.341 Sum_probs=187.8
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-------c-----EEEEEe-cCCCeEEEEEEe-------cCCCeEEEEeC
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-------E-----CLHVYE-KTGVGLISCGWF-------LDGGGIFAGMT 379 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-------~-----~~~~~~-~~~~~v~~~~~~-------~~~~~l~sg~~ 379 (581)
...+.|+|||..|++-+.|..+.+|++... . ....+. .....|...+|. |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 457899999999999999999999998521 0 111111 224578888887 57788999999
Q ss_pred CCcEEEEeCCCCeEEeeccC--cc---ccEEEEEEeeCCCEEEEEEcCCeEEEEEC-CCCe----ee-----EEecCCce
Q 008005 380 DKSICLWDLDGRELESWKGQ--KT---LRISDMAITDDGKRIISICREAAILLLDR-EANF----ER-----WIEEEEVI 444 (581)
Q Consensus 380 dg~i~vwd~~~~~~~~~~~~--~~---~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~----~~-----~~~~~~~i 444 (581)
+.-|.+||.-++++...... +. ....+++|+|||..|++| ....|+++|+ +.+. .. .....+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999988776554432 11 245789999999999876 4678999999 4443 11 22346778
Q ss_pred EEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC-CCcEEEEeCCC-Cce
Q 008005 445 TSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRYT-GEL 521 (581)
Q Consensus 445 ~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~~-~~~ 521 (581)
.+++|+| +.+.+++++....+-||.-... .+...+.+|.+.+..+. +.++|+.+++|+. |-.|..||++. +.+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~---~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQ---WCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEE---eccCcCeecccccCCCeEEEEeehhccch
Confidence 9999999 5558999999999999987776 78888889999855443 4788999999887 66999999875 567
Q ss_pred EEEeccCCC-CEEE--EEEcCCCCcEEEEEECCCcEEEecCCc-cccc-----cccCCCceEEec
Q 008005 522 VLALAGHSG-SVNC--VSWNPANLHMLASASDDRTIRIWGLDQ-INMK-----HRDQSNGIVHHC 577 (581)
Q Consensus 522 ~~~~~~h~~-~v~~--l~~~p~~~~~l~s~s~Dg~I~iW~~~~-~~~~-----~~~~~~~~~~~~ 577 (581)
+..+..|.+ .-.. ....|++ .+|++|+.||.|++||+++ ++.. +.+-.+++..+|
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred hhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCcccccccccccccceecCc
Confidence 778887765 2223 4456888 7999999999999999998 4422 234466666655
No 178
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=2e-17 Score=148.94 Aligned_cols=207 Identities=12% Similarity=0.153 Sum_probs=173.2
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
+.--..+|+|.+|++|+..+|.+.....|.||.......++..+++..|...|++++|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345789999999999999999999999999998776688999999999999999999999999999999999999983
Q ss_pred -CC--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe----EEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 348 -SG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 348 -~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
.+ ++...+..+...++++.|+|.++.|++|+....|.+|-++... .+.........|.++.|+|++-.+++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33 3455566788899999999999999999999999999886533 1233444455799999999999999999
Q ss_pred cCCeEEEEECC-----CCe---------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008005 421 REAAILLLDRE-----ANF---------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 421 ~dg~i~i~d~~-----~~~---------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
.|+..+++..- ... ..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999988631 110 1112456789999999999999999999999999987764
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2e-17 Score=172.51 Aligned_cols=298 Identities=15% Similarity=0.171 Sum_probs=208.1
Q ss_pred cccccceeecccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccC----CeeeEEEEecCCCCCEEEEEeCCCCCeEE
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLL 333 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 333 (581)
......+..+..|...|..++.++.. .+++|||.||+|++|+...- +......++......+.++...+++..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 44456677888899999999988765 89999999999999998631 23344445555677899999999999999
Q ss_pred EeeCCCcEEEEEcCCC--c-----EEEEEecC-CCeEEEE-EEec-CCC-eEEEEeCCCcEEEEeCCCCeEEe--eccCc
Q 008005 334 TCGQEEAIRRWDVNSG--E-----CLHVYEKT-GVGLISC-GWFL-DGG-GIFAGMTDKSICLWDLDGRELES--WKGQK 400 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~-~~~-~l~sg~~dg~i~vwd~~~~~~~~--~~~~~ 400 (581)
+++.||.|++.+++.. + +.+....+ .+.+.++ +|.. .+. .++.+...+.|..||++...... .....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998762 1 22222222 2334333 3332 233 68888889999999997643211 11223
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCC---CCEEEEEe--eCCcEEEEEecC
Q 008005 401 TLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD---NKYLLVNL--INQEIHLWSIES 472 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~---~~~l~~~~--~d~~i~iwd~~~ 472 (581)
.+.|++++.+|.+++++.|+..|.+.+||++-+. ....++..++..+..+|- ....++++ ..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 3589999999999999999999999999999876 233345567777777663 34555444 478899999988
Q ss_pred CCceeEEEecc-----------------ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE-------------
Q 008005 473 DPKLVSRYKGH-----------------KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV------------- 522 (581)
Q Consensus 473 ~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~------------- 522 (581)
+.. ...+-.. ......+.+++ ...+.++.+|+.|..|+.||....+..
T Consensus 1275 g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1275 GLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred Ccc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccc
Confidence 733 2222211 12222333333 445678999999999999996432110
Q ss_pred -----------------------------------EEe--------ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 523 -----------------------------------LAL--------AGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 523 -----------------------------------~~~--------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1353 ~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1353 NSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 146778999987766556999999999999994
No 180
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.9e-18 Score=159.76 Aligned_cols=202 Identities=15% Similarity=0.265 Sum_probs=148.1
Q ss_pred EEEEEeCC-------CCCeEEEeeCCCcEEEEEcCCCcE---E------------------EEEecCCCeEEEEEEecC-
Q 008005 320 VFTVSWSP-------NDHQLLTCGQEEAIRRWDVNSGEC---L------------------HVYEKTGVGLISCGWFLD- 370 (581)
Q Consensus 320 V~~l~~sp-------~~~~l~s~~~dg~i~vwd~~~~~~---~------------------~~~~~~~~~v~~~~~~~~- 370 (581)
-.|+.|.. .|+++|.|+.|..|.|||+.-... . ..-.+|+..|..++|+.+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35777753 368999999999999999852110 0 012257777888888764
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEE
Q 008005 371 GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANFERWIEEEEVITSFSL 449 (581)
Q Consensus 371 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~ 449 (581)
.+.|++|+.|.+|++||+.+++......++...|.++.|+|. ...|++|+.|++|.+.|.+...
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------------- 320 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------------- 320 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc---------------
Confidence 456889999999999999999998888888889999999885 4456666667776666655310
Q ss_pred CCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-ceEEEeccC
Q 008005 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-ELVLALAGH 528 (581)
Q Consensus 450 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h 528 (581)
..=.-|.+... +-.+.+- ......++++..||+|+-+|+++. +++.++++|
T Consensus 321 -------------~s~~~wk~~g~-------------VEkv~w~--~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH 372 (463)
T KOG0270|consen 321 -------------NSGKEWKFDGE-------------VEKVAWD--PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH 372 (463)
T ss_pred -------------ccCceEEeccc-------------eEEEEec--CCCceeEEEecCCceEEeeecCCCCCceeEEEec
Confidence 00011222211 1112222 223356788899999999998864 999999999
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 529 SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 529 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
.++|.++++++..+.+++|+|.|+.|++|++..-..
T Consensus 373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred cCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 999999999999889999999999999999976554
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.2e-17 Score=154.20 Aligned_cols=208 Identities=13% Similarity=0.242 Sum_probs=163.1
Q ss_pred EEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCC-------cEEEEEecCCCeEEEEEEecC-CCeEEEEeCCC
Q 008005 311 HRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDK 381 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg 381 (581)
..+.+|+++|..++|+| ++..||+|+.|.+|.||.+..+ +.+..+.+|...|--+.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34679999999999999 7788999999999999998654 456778899999999999994 46788999999
Q ss_pred cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE--Eec-CCceEEEEECCCCCEEEE
Q 008005 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW--IEE-EEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~~i~~~~~sp~~~~l~~ 458 (581)
+|.+||+.+++...... |...|.++.|+.||..+++.+.|..|++||.+++.... ..| ......+.|-.++..+-+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999887665555 66789999999999999999999999999999988332 233 334566778888885555
Q ss_pred Eee---CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE-EEeCCCcEEEEeCCCCce
Q 008005 459 NLI---NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 459 ~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-sgs~dg~I~iwd~~~~~~ 521 (581)
|.. +..+.+||..+...++....-.... .+-.-|+.++.+.++ +|-.|+.|+.|.+.+..+
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 543 6789999988765554433333222 244556688877765 555699999999877653
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=8.1e-18 Score=149.24 Aligned_cols=250 Identities=21% Similarity=0.312 Sum_probs=170.7
Q ss_pred cEEEEEEcC--C-CCEEEEEeC----CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCC-----CeEEEeeCCCcE
Q 008005 274 EVWFLQFSH--D-GKYLASSSK----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-----HQLLTCGQEEAI 341 (581)
Q Consensus 274 ~V~~l~~s~--~-g~~lasgs~----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~~l~s~~~dg~i 341 (581)
.++++.||. + +.+||.|+. .+.|.|-.+.....-.....-..|.-+++.+.|.|+. .+|||++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 467788873 2 347888873 4677777665322111112224689999999999976 3566654 379
Q ss_pred EEEEcCCCc--E--EEE-----EecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCe---EEeeccCccccEEEEE
Q 008005 342 RRWDVNSGE--C--LHV-----YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMA 408 (581)
Q Consensus 342 ~vwd~~~~~--~--~~~-----~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~i~ 408 (581)
++|.+...+ . ... -..+..++++..|+. +.+++.+.+-|-+..+||++++. ++.....|...|.+++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999987422 1 111 123467889999987 67788999999999999997652 3444444555555555
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008005 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
|...+. +.|++.+.||.+++||++......-.+........
T Consensus 204 f~~~s~---------------------------------------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 204 FLKGSR---------------------------------------DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eccCcc---------------------------------------ceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 554332 24455555666666666554333333433333334
Q ss_pred EEEeeecCCCCcEEEEEeCCC-cEEEEeCCC-CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 489 VIRSCFGGFEQAFIASGSEDS-QVYIWHRYT-GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
.++.++...+-+++|+-..|. .|.|.|++. ..++..+.+|.+.|++++|.|..+..|+|||+|..+.|||+.+.-.
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 466666666778888877765 799999875 5678999999999999999999889999999999999999986544
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.7e-16 Score=136.21 Aligned_cols=270 Identities=16% Similarity=0.224 Sum_probs=196.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC--------CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..|.+-+|+|.+++|+.|..+|.|.+..+.+- ++ ..+...++|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 34666789999999999999999999988531 11 2334458999999999998 45777776 4999999
Q ss_pred EcCCCcE------EEEE--ec-----CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee
Q 008005 345 DVNSGEC------LHVY--EK-----TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 345 d~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~ 411 (581)
....... +... .. .-..|+++...|..+.+++++.|+.++.||++++.+......|+..+.++..-.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8754321 1111 11 123578888888888888888999999999999999999999999999999866
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-eeEEe-----------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008005 412 DGKRIISICREAAILLLDREANF-ERWIE-----------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-----------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
....+++|+.||++++||.++.+ ...++ ....|.+++. +..++++|+ ...+.+|.++.. ++...
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss-e~t~v 242 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS-ESTCV 242 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC-CceEE
Confidence 67789999999999999999987 22221 1234555555 556777665 778999999986 55555
Q ss_pred EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+...... .. + ......++++++.+.|.-|.+ +|.+....+..+...++..|+..--++|..++....+.|+
T Consensus 243 fpipa~v-~~--v---~F~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPIPARV-HL--V---DFVDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eecccce-eE--e---eeecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 5433221 11 2 224567888888889999986 4666666666566677777765433466666777777765
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.6e-16 Score=161.10 Aligned_cols=262 Identities=17% Similarity=0.233 Sum_probs=192.7
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcE--EE----EEecCCCeEEEEE
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC--LH----VYEKTGVGLISCG 366 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~ 366 (581)
+.+.||++..... ....+ .....|+|+.|+| +..+++.|..+|.|.+||+..+.. .. ....|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~--Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT--PELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCC--ceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4799999986532 22223 3567899999999 667888888999999999987654 22 2236788999999
Q ss_pred EecCCCe--EEEEeCCCcEEEEeCCCCeE------Eee------ccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECC
Q 008005 367 WFLDGGG--IFAGMTDKSICLWDLDGREL------ESW------KGQKTLRISDMAITD-DGKRIISICREAAILLLDRE 431 (581)
Q Consensus 367 ~~~~~~~--l~sg~~dg~i~vwd~~~~~~------~~~------~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~ 431 (581)
|..+... |++++.||.|+.|+++.-.. ... .......+++++|.+ +...+++|+.+|.|..-+..
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 9875544 99999999999999863211 111 112234688899987 45678999999999885443
Q ss_pred CCe----------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC-Cc
Q 008005 432 ANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QA 500 (581)
Q Consensus 432 ~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 500 (581)
... .....|.++|.++.++|-+..++..+.|.+++||.......++..+..+...++.+ .|+|. -.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v---aWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV---AWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee---EEcCcCce
Confidence 322 24557889999999999776665555599999999884446666666666553333 33554 35
Q ss_pred EEEEEeCCCcEEEEeCCC--CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 501 FIASGSEDSQVYIWHRYT--GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.++++..||.|.+||+.. ..++.+.+.+....+.+.|++.| .+|+.|+..|++.+|++...
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence 788888999999999754 45566666666777888999989 79999999999999999643
No 185
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-16 Score=143.34 Aligned_cols=210 Identities=19% Similarity=0.335 Sum_probs=143.0
Q ss_pred ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC----cEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEE
Q 008005 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG----ECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vw 386 (581)
-.+|.+-|+++.|.+.|+.+|+|+.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3578899999999999999999999999999996543 46677789999999999976 58889999999999999
Q ss_pred eCCCCe---------EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEE
Q 008005 387 DLDGRE---------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 387 d~~~~~---------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
.-.... ...........|+++.|.|.. -|-.|+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h--------------------------------------lGLklA 130 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH--------------------------------------LGLKLA 130 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchh--------------------------------------cceEEE
Confidence 853111 011111222244444444421 233445
Q ss_pred EEeeCCcEEEEEecCCCce-----eE-------EEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCC-
Q 008005 458 VNLINQEIHLWSIESDPKL-----VS-------RYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTG- 519 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~-----~~-------~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~- 519 (581)
+++.||.++||+......+ .. ....+....+++.++..-....+||.|+.+ +.++||....+
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 5555555555544332111 11 111233333445554333345678888876 57889975543
Q ss_pred ---ceEEEeccCCCCEEEEEEcCCCC---cEEEEEECCCcEEEecCCc
Q 008005 520 ---ELVLALAGHSGSVNCVSWNPANL---HMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 520 ---~~~~~~~~h~~~v~~l~~~p~~~---~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+.++.+|..+|++++|.|+-+ ++||+++.|| |+||.+..
T Consensus 211 rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 211 RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 34667889999999999999742 6899999999 99999984
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.8e-15 Score=150.16 Aligned_cols=272 Identities=11% Similarity=0.157 Sum_probs=176.6
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcccCCeeeEEEEecCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
++.+..+..+.+|+-.... ....++.+. +.+....++++|++++|++++ .++.|.+|++...+.+....... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-L 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-C
Confidence 3445566778887653211 112344443 345677899999999887664 57889999997444444333332 2
Q ss_pred CCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCC-Cc---EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCC
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNS-GE---CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG 390 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~ 390 (581)
.+....++|+|+++++++++. ++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+||+++
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 334678999999999888765 78999999974 32 222222 223467788999999986655 568999999975
Q ss_pred -CeEEe-----eccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCC--eeeE---E-e------cCCceEEEEECC
Q 008005 391 -RELES-----WKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREAN--FERW---I-E------EEEVITSFSLSK 451 (581)
Q Consensus 391 -~~~~~-----~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~---~-~------~~~~i~~~~~sp 451 (581)
+.+.. ...........++|+|+++++++++. ++.|.+|++... .... . . .......+.++|
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 32211 11112235678999999999988876 899999999742 2111 1 1 111233588999
Q ss_pred CCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC-CCcEEEEeCC
Q 008005 452 DNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRY 517 (581)
Q Consensus 452 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~ 517 (581)
++++++++.. ++.|.+|++........ +.++.......+...++++|++|++++. +++|.+|++.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999864 68999999965422221 1111110001112234889999998776 8899999864
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.3e-18 Score=174.23 Aligned_cols=246 Identities=19% Similarity=0.267 Sum_probs=204.0
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
+.+..+.+|.++|+|+.|...|.++++|+.|..++||..+++.+.....+|.+.++.++.+.++..+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee------EEecCCceEEEEECCCCCEEEEEee
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFER------WIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+..+........|.+.|++++|+|-. +.+.||++++||.+-.... .......+.++.|...+..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999975 6788999999999832211 1233456778888888889999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
++.-..|.+... ..+... .+-..+.+....+.+++-.+..+++|++.+|.+.+.+.+|...+..+.++|-+
T Consensus 337 d~ea~n~e~~~l-------~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 337 DGEARNHEFEQL-------AWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred CcccccchhhHh-------hhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 998888776432 011111 01111112223567778888899999999999999999999999999999999
Q ss_pred CcEEEEEECCCcEEEecCCcccccc
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+....+++.||...|||+-.+....
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcce
Confidence 8888999999999999998776543
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=147.42 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=190.9
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC------CCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCC
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN------SGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~------~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++ +.+++.....| ...|.|++|...+..+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 334567899999999999999999999999999999985 34556555444 58999999999999999999999
Q ss_pred cEEEEeCCCCeEEeeccCc--cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCC-C
Q 008005 382 SICLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKD-N 453 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~-~ 453 (581)
+|...|+.+.+......+. .+.|..+..+|-.+.+++.+.++.|.+||.+... ...........++.|+|. .
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999987765555433 3579999999999999999999999999998765 122234556788999994 5
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccc---eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce-EEEeccCC
Q 008005 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA---RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL-VLALAGHS 529 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~ 529 (581)
.+|++++..+.+-+||.+....++..+.+..+- ....-...|+++|+.+.+.-....-.+||+.+..+ +..+. |.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N 286 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HN 286 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CC
Confidence 678888889999999999876665554433221 11111233488888888877666667788877444 33332 32
Q ss_pred -------CCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 530 -------GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 530 -------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+.+++|..+. .++||+++-.|++|.+..
T Consensus 287 ~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCcceeeeeeeeeeeecce--eeeccCcccceEEEecCC
Confidence 256788888765 599999999999999864
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.5e-16 Score=160.02 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=165.4
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEec
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 369 (581)
+..|.+||.+... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++.... .........++|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999987432 24466788889999999999999987654 3699999988764322 22222344689999
Q ss_pred CCCeEEEEe-CCCcEE--EEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECC--CCeeeEEecCCc
Q 008005 370 DGGGIFAGM-TDKSIC--LWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDRE--ANFERWIEEEEV 443 (581)
Q Consensus 370 ~~~~l~sg~-~dg~i~--vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~ 443 (581)
||+.|+.++ .+|.+. +||+.++....... +...+....|+|||+.++.++ .++...+|++. ........+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999988765 577654 55776666655544 334678899999999887665 56777777654 33333333332
Q ss_pred eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC--CCCce
Q 008005 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR--YTGEL 521 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~--~~~~~ 521 (581)
....|+|||+++++.+.+ .+.+||+.++ .......... .....++|+|++|+.++.+|.+.+|++ .+|..
T Consensus 336 -~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g-~~~~lt~~~~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 336 -YSAQISADGKTLVMINGD-NVVKQDLTSG-STEVLSSTFL-----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -CCccCCCCCCEEEEEcCC-CEEEEECCCC-CeEEecCCCC-----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 467899999999888765 4666999876 3222211211 112335999999999999998888875 46888
Q ss_pred EEEeccCCCCEEEEEEcCC
Q 008005 522 VLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 522 ~~~~~~h~~~v~~l~~~p~ 540 (581)
...+.+|.+.+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 8999999999999999984
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.8e-15 Score=150.69 Aligned_cols=295 Identities=14% Similarity=0.170 Sum_probs=212.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeE-EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSL-KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...+..|.. -.++.+++.|.+.+..- +..+.+|+..+..+... ...-..|...++|.++||+++++|++..||.|.+
T Consensus 154 ~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred hhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 334445544 45788888888766664 45689999876432111 1122347777999999999999999999999999
Q ss_pred EEcCC--C--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 344 WDVNS--G--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 344 wd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
|.--. + .....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.++. .++.+.-..+|..+.++||+...+..
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence 96332 1 2345677888999999999999999999999999999999888 66666667799999999999999999
Q ss_pred EcCCeEEEEECCCCe-eeE------------EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-----
Q 008005 420 CREAAILLLDREANF-ERW------------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK----- 481 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----- 481 (581)
..|+.|.+....+.. ... ....+-.+.++++|..+.++..+..+.|.+||+-+...+ ..+.
T Consensus 311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n 389 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDEN 389 (792)
T ss_pred ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEeec
Confidence 999999999876544 111 112445678899998888889999999999999887333 3332
Q ss_pred cccc---ceeEEEeeecCCCCcEEEEEe--------CCC--cEEEEeCCCCc----eEE-EeccCCCCEEEEEEcCCCCc
Q 008005 482 GHKR---ARFVIRSCFGGFEQAFIASGS--------EDS--QVYIWHRYTGE----LVL-ALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 482 ~~~~---~~~~i~~~~~~~~~~~l~sgs--------~dg--~I~iwd~~~~~----~~~-~~~~h~~~v~~l~~~p~~~~ 543 (581)
.+.+ ....+...+.+..|++++|+- .|| .+++|-..... +.. ....|...+...++.+.-..
T Consensus 390 ~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs 469 (792)
T KOG1963|consen 390 YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS 469 (792)
T ss_pred ccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc
Confidence 1111 122334444466689998864 243 67889754433 222 23468777666666544334
Q ss_pred -EEEEEECCCcEEEecCCccc
Q 008005 544 -MLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 544 -~l~s~s~Dg~I~iW~~~~~~ 563 (581)
..+|+|.||.++||-+...+
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred ceeEEeccCCeEEEEEEeccc
Confidence 89999999999999995433
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=3.7e-16 Score=138.63 Aligned_cols=249 Identities=18% Similarity=0.293 Sum_probs=183.1
Q ss_pred eeecccccCcEEEEEEcC-CCCEEEEEeCC-------CeEEEEEcccCCe------eeEEEEec-CCCCCEEEEEeCCCC
Q 008005 265 LQILEAHSDEVWFLQFSH-DGKYLASSSKD-------QSAIIWEVKEDGQ------VSLKHRLS-GHRKPVFTVSWSPND 329 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~-~g~~lasgs~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~V~~l~~sp~~ 329 (581)
..+|..|.++|+.++-+| +.++|+|+..+ ..+.||.+..... ++++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 346778999999999999 45577776442 2478999874321 23333333 455689999999999
Q ss_pred CeEEEeeCCCcEEEEEcCCCcE-EEEEe-----cCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCCC-eEEeeccCc
Q 008005 330 HQLLTCGQEEAIRRWDVNSGEC-LHVYE-----KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGR-ELESWKGQK 400 (581)
Q Consensus 330 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~ 400 (581)
..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++. .|+++..||+++. +...+...|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9998876 78999999988765 33332 2355678889999 66666554 6899999999864 445566677
Q ss_pred cccEEEEEEeeCCC-EEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCC-
Q 008005 401 TLRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDP- 474 (581)
Q Consensus 401 ~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~- 474 (581)
...|.++.|+|+.+ +|++++.||.|++||.+..+ .....|...+.++.|+|. ..++++++.|..|.+|....-.
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 77899999999876 57788899999999999876 556688999999999994 5678889999999999764311
Q ss_pred ---------------------------ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 475 ---------------------------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 475 ---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..+.++..|...++.+.+ .+.+.=.+|+-+.||.+.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW--SsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW--SSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEee--ccCCCeeEEEeccCceEEeecCC
Confidence 123356667776555433 24455678889999998886654
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1e-15 Score=138.24 Aligned_cols=280 Identities=17% Similarity=0.282 Sum_probs=196.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEEEE
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 355 (581)
-+.|||+|+++|+++.- .+.|-|..+- +..+.+. .-+.|..+.|..|..+++++ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46799999999999865 6777776542 2222221 23557889999888776655 56889999999999888888
Q ss_pred ecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC------------
Q 008005 356 EKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE------------ 422 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------ 422 (581)
.....++..++|+|||+.++ +...+-.|.+|.+.+.......-... .+..++|+|||++.+..++-
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 88899999999999997655 55568899999998877655544443 56889999999988777642
Q ss_pred ------------------------CeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---
Q 008005 423 ------------------------AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--- 474 (581)
Q Consensus 423 ------------------------g~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--- 474 (581)
..+.+||.--.. .......-.+..++|+|.+++|++|+.|+.+++.+--+-.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 234555533222 1223344668899999999999999999988876543200
Q ss_pred -----------c---------------------------------------------eeEEEe---ccccceeEEEeeec
Q 008005 475 -----------K---------------------------------------------LVSRYK---GHKRARFVIRSCFG 495 (581)
Q Consensus 475 -----------~---------------------------------------------~~~~~~---~~~~~~~~i~~~~~ 495 (581)
. .+..++ ...++...+....+
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf 326 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF 326 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence 0 000011 11122233444556
Q ss_pred CCCCcEEEEEeCC--CcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 496 GFEQAFIASGSED--SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 496 ~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
++|..++++-.+. +.+.+||++..+....+. ...+|....|+|..+ .|+.+.....+++|.......
T Consensus 327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred cCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCceE
Confidence 8888888876653 479999998877665554 467899999999986 555565666799999886543
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.5e-17 Score=150.75 Aligned_cols=192 Identities=21% Similarity=0.275 Sum_probs=151.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE
Q 008005 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
.+++|+++|..|++|+.||+++||++.+. ........|...|.++.|+|||+.|++.+.| ..+||++.+|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998654 3445567799999999999999999999999 9999999999776655
Q ss_pred ec--CCCeEEEEEEecCC---CeEE--EEeCCCcEEEEeCCCC------eEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 356 EK--TGVGLISCGWFLDG---GGIF--AGMTDKSICLWDLDGR------ELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 356 ~~--~~~~v~~~~~~~~~---~~l~--sg~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
.. .+.....|.|+.|+ .+++ ....-+.|..||+... ........ ...|++++++++|++++.|+.+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEeccC
Confidence 42 23455677888766 3322 2334556777776321 11111112 2379999999999999999999
Q ss_pred CeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|.|.+++..+.+ .....|...|+.+.|+||.++++..+.+..+.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998877 23346788999999999999999999999988887755
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=3.9e-16 Score=149.48 Aligned_cols=261 Identities=16% Similarity=0.183 Sum_probs=184.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEE-EEEeCC-------CCCeEEEeeCCCcE
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSP-------NDHQLLTCGQEEAI 341 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~sp-------~~~~l~s~~~dg~i 341 (581)
-|...|.|+.|+.+...+.+++.+..+.-|++.+. ....... ....|. .+-.-+ ....|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~---p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKL---PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhC---CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 47777889999998887777665544444455432 1111111 111111 110111 23578889999999
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
.+.+ ..++..+.+..|.+.+.+-.|+|||.-|++++.||.|++|.- ++.+.........+|.|++|.|+.+.++.+ .
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~ 164 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-Q 164 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-c
Confidence 9987 567778888999999999999999999999999999999995 444444444455589999999998776654 3
Q ss_pred CCeEEEEECCC--CeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC
Q 008005 422 EAAILLLDREA--NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 422 dg~i~i~d~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.+.+.+=.+.. ...++..|.+-|.++.|++..+.+++|+.|-..++||-... .+..-..|.. .|++..|.|+
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey---~ITSva~npd- 238 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEY---AITSVAFNPE- 238 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCChhcc---ceeeeeeccc-
Confidence 44555554443 34888999999999999999999999999999999998763 3333334443 4666667888
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
..++.+|.+ +++ --+...+.|..++|++|| ..++.|...|.+.+
T Consensus 239 ~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADG-TQATCGTSTGQLIV 282 (737)
T ss_pred cceeeeeee-eee-----------ecCCCccceEEEEEcCCC-ceeeccccCceEEE
Confidence 555555532 222 122346889999999999 68888888887765
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=8.1e-16 Score=156.13 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=179.6
Q ss_pred ccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCe--e-eEEEEecCCCCCEEEEEeCCCC--CeEEEeeCCCcEEEE
Q 008005 271 HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ--V-SLKHRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRW 344 (581)
Q Consensus 271 h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vw 344 (581)
-...|+|+.|+| +..++|.|..+|.|.+||+..+.. . ........|..+|+.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 566888899999999999986543 1 1223345699999999998744 449999999999999
Q ss_pred EcCCCcE------EEEEe------cCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC---Ce-----EEeeccCcccc
Q 008005 345 DVNSGEC------LHVYE------KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG---RE-----LESWKGQKTLR 403 (581)
Q Consensus 345 d~~~~~~------~~~~~------~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~---~~-----~~~~~~~~~~~ 403 (581)
+++.-.. ..... .....++++.|.+ +...+++|+.+|.|..-+-.+ .. .......|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322 11111 2235688899988 566799999999988744322 11 12234456679
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCC-Ce--eeEEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCC-CceeE
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREA-NF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD-PKLVS 478 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~-~~~~~ 478 (581)
|.++.++|=+..++..+.|-++++|.... .. ..+..+...+++++|||.. ..|+++..+|.+.+||+... ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 99999999888777777799999999873 32 3444556669999999965 56777777999999999653 23344
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
....+ ...+...++++.|++|++|...|.+++|++..
T Consensus 481 s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 43333 33466777799999999999999999999853
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=1.9e-16 Score=154.32 Aligned_cols=259 Identities=16% Similarity=0.247 Sum_probs=185.3
Q ss_pred EcCCCCEEEE--EeCCCeEEEEEcccCCeeeE--EEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCC-----
Q 008005 280 FSHDGKYLAS--SSKDQSAIIWEVKEDGQVSL--KHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG----- 349 (581)
Q Consensus 280 ~s~~g~~las--gs~dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~----- 349 (581)
|..+...+|+ ++..|.|-||++...+++.- ...+ .....|+.+.|.| |...|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344455553 45678999999986654311 1111 1345699999999 7889999999999999998754
Q ss_pred --cEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 350 --ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 350 --~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.....+..|...|+++.|+| -.+.|++++.|-+|++||+.+.........|...|.+++|+|+|+.+++.|.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34567889999999999999 456789999999999999999888888888889999999999999999999999999
Q ss_pred EEECCCCeeeEEecCCc----eEEEEECCCCCEEEEEeeCC----cEEEEEecCCC-ceeEEEeccccceeEEEeeecCC
Q 008005 427 LLDREANFERWIEEEEV----ITSFSLSKDNKYLLVNLINQ----EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 427 i~d~~~~~~~~~~~~~~----i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
+|..+..........++ --.+.|--||+++++.+.|. .|.+||..+.. .++.+.......... .-++.+
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L--vP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL--VPHYDY 823 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc--cccccC
Confidence 99999887555544433 34677888999998887654 68888876532 222222211111111 112233
Q ss_pred C-CcEEEEEeCCCcEEEEeCCCCce-EEEeccCCCC--EEEEEEcCCC
Q 008005 498 E-QAFIASGSEDSQVYIWHRYTGEL-VLALAGHSGS--VNCVSWNPAN 541 (581)
Q Consensus 498 ~-~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~--v~~l~~~p~~ 541 (581)
| +-++++|-.|..|++|.+-...+ +..+..|..+ -..++|.+..
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeeccc
Confidence 4 45678888899999999765443 3344434332 2356666654
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=2.8e-14 Score=141.23 Aligned_cols=278 Identities=14% Similarity=0.172 Sum_probs=183.2
Q ss_pred EEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEE
Q 008005 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 366 (581)
+++-..++.|.|.|..+. +....+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...+++
T Consensus 9 ~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 345567899999999876 4445555444434457899999999999999999999999999999987655 567899
Q ss_pred EecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccC-------ccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe---
Q 008005 367 WFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ-------KTLRISDMAITDDGKRIISICR-EAAILLLDREANF--- 434 (581)
Q Consensus 367 ~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--- 434 (581)
+++||++++++. ..+.+.++|.++.+....... ...++..+..++....++..-. .+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 589999999988665543321 2346778888888886666555 5899999977654
Q ss_pred eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEec-------------cccc--ee----------
Q 008005 435 ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG-------------HKRA--RF---------- 488 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-------------~~~~--~~---------- 488 (581)
..............|+|++++++++. .++.|.++|..+. +.+..+.. |... .+
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 44556677788899999999987754 4567777777664 22221100 0000 00
Q ss_pred -----------------E---EE------eeecCCCCcEEEEE----eCCCcEEEEeCCCCceEEEeccCC-CCEEEEEE
Q 008005 489 -----------------V---IR------SCFGGFEQAFIASG----SEDSQVYIWHRYTGELVLALAGHS-GSVNCVSW 537 (581)
Q Consensus 489 -----------------~---i~------~~~~~~~~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~ 537 (581)
. +. ....+|+++++++. ...++|.++|..+.+.+..+.... ..+..+.|
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 0 00 11237788999887 445799999999998888776432 35999999
Q ss_pred cCCCCcEEEEEECCC-cEEEecCCccccccccC
Q 008005 538 NPANLHMLASASDDR-TIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg-~I~iW~~~~~~~~~~~~ 569 (581)
+++|..+.+|.-.++ .|.+||..+.+...+..
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999976666665555 89999999999887766
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4e-16 Score=141.79 Aligned_cols=268 Identities=14% Similarity=0.237 Sum_probs=184.6
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC--CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~ 315 (581)
+......+.+.+|+..+ .+.+..+++|...++.++|.. ....+.+|+.||+|++||++...+.. ......
T Consensus 43 vav~lSngsv~lyd~~t-------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~ 114 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGT-------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWTQ 114 (376)
T ss_pred EEEEecCCeEEEEeccc-------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heeccC
Confidence 34445566777775433 456888999999999999987 46689999999999999998766543 334455
Q ss_pred CC-CCEEEEEeCCCCCeEEEeeC----CCcEEEEEcCCCcE-EEE-EecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEe
Q 008005 316 HR-KPVFTVSWSPNDHQLLTCGQ----EEAIRRWDVNSGEC-LHV-YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 316 h~-~~V~~l~~sp~~~~l~s~~~----dg~i~vwd~~~~~~-~~~-~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd 387 (581)
|. .+..|++..-+++.+++|.. +-.|.+||++..+. +.. ...|...|+++.|+| +.+.|++|+.||.|.+||
T Consensus 115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 55 56777777767778887753 56799999998765 443 457889999999999 567899999999999999
Q ss_pred CCCCe----EEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCeee-EEecC-------------CceEEEE
Q 008005 388 LDGRE----LESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFER-WIEEE-------------EVITSFS 448 (581)
Q Consensus 388 ~~~~~----~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-------------~~i~~~~ 448 (581)
+.... +.... .+...|.++.|..++ +.+.+.+...+..+|+++.+... ..... ..+...-
T Consensus 195 ~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 195 TKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred cCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 96432 22222 233469999999876 56889999999999999887621 11111 1111111
Q ss_pred ECCCCCEEEEEee-CCcEEEEEecC---C--CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 449 LSKDNKYLLVNLI-NQEIHLWSIES---D--PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 449 ~sp~~~~l~~~~~-d~~i~iwd~~~---~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
...+....++++. -+...++-+.. + ...+..+.++.. ..++..++...+.++++|++||.+.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~--eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE--EIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH--HHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1224445555444 55555554432 1 123334444322 23555666778899999999999999985
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.2e-14 Score=124.48 Aligned_cols=228 Identities=14% Similarity=0.201 Sum_probs=164.6
Q ss_pred ceeccCCCCCceeeccCCC---CcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee---eEE
Q 008005 237 CLFHNTSDSDFSLYSDHQC---GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV---SLK 310 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~---~~~ 310 (581)
.++.....+.+.+++-... .........+-..++|.++|+.++|.. .+|++|+ ||.|+=|.+....+- +..
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhh
Confidence 3566667777665543221 112222334555689999999999983 4677765 699999988643220 000
Q ss_pred --EEecCCC-----CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008005 311 --HRLSGHR-----KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 311 --~~~~~h~-----~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.....|. -.|+++...|..+.+++++.|+.+.-||+++|+..+.+++|.+.+.++.--.....+++|+.||++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 0111222 248999999988888888899999999999999999999999999999986677789999999999
Q ss_pred EEEeCCCCeEEeeccC----------ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCC
Q 008005 384 CLWDLDGRELESWKGQ----------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKD 452 (581)
Q Consensus 384 ~vwd~~~~~~~~~~~~----------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~ 452 (581)
++||.++++....... -...|-+++. +..++++|+ ...+.+|.++... ...+....++..+.|.
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~-- 255 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV-- 255 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeee--
Confidence 9999988765443321 1123444444 455777654 5679999999888 6777888889989885
Q ss_pred CCEEEEEeeCCcEEEEEecC
Q 008005 453 NKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 453 ~~~l~~~~~d~~i~iwd~~~ 472 (581)
.+.+++++..+.+.-|.+..
T Consensus 256 ~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 256 DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cceEEEeccccceeeeeecc
Confidence 45688888888999998865
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=6.1e-15 Score=154.31 Aligned_cols=256 Identities=14% Similarity=0.166 Sum_probs=183.9
Q ss_pred eEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCC-------cEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008005 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
..+..+..|...|..++.++.. .+++||+.||+|++||...- +...++......+.++...+.+..+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4567788899999999988755 99999999999999998541 233445445678888999999999999999
Q ss_pred CCcEEEEeCCCCeE-------Eeec-cCccccE-EEEEEee-CCC-EEEEEEcCCeEEEEECCCCe----eeEEecCCce
Q 008005 380 DKSICLWDLDGREL-------ESWK-GQKTLRI-SDMAITD-DGK-RIISICREAAILLLDREANF----ERWIEEEEVI 444 (581)
Q Consensus 380 dg~i~vwd~~~~~~-------~~~~-~~~~~~i-~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i 444 (581)
||.|.+.+++.... .... ....+.+ ..-++.. .+. .++.+...+.|..||++... .+.....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999965211 1111 1122223 3333333 233 78888899999999999876 3444567889
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccccceeEEEeeecCCCCcEEEEEeC--CCcEEEEeCCCCce
Q 008005 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGSE--DSQVYIWHRYTGEL 521 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~sgs~--dg~I~iwd~~~~~~ 521 (581)
++++.+|.+.+++.|+..|.+.+||++-+ .++..+. .+......+.+++..+.....++++. .+.|.+|++.+|.+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999987 4444433 44455556667776766666665554 67999999999876
Q ss_pred EEEeccCC--------C-----------CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 522 VLALAGHS--------G-----------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 522 ~~~~~~h~--------~-----------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
...+.... . ......+...+ .++.+|+.|..|+.||....+.-
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccc
Confidence 66554320 0 11112222223 48999999999999999877654
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.8e-15 Score=134.45 Aligned_cols=244 Identities=19% Similarity=0.302 Sum_probs=176.3
Q ss_pred cccCcEEEEEEcCCCC-----EEEEEeCCCeEEEEEcccC-CeeeEEEEe-----cCCCCCEEEEEeCC-CCCeEEEeeC
Q 008005 270 AHSDEVWFLQFSHDGK-----YLASSSKDQSAIIWEVKED-GQVSLKHRL-----SGHRKPVFTVSWSP-NDHQLLTCGQ 337 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~-----~lasgs~dg~i~iwd~~~~-~~~~~~~~~-----~~h~~~V~~l~~sp-~~~~l~s~~~ 337 (581)
.|.-+++.+.|.|+.. +|||++ -.+++|.+... .+..+...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999763 666654 36999998742 222222222 34667899999987 7789999999
Q ss_pred CCcEEEEEcCCCc---EEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC
Q 008005 338 EEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 338 dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
|-+..|||++++. ....+-.|+..|..++|...+ +.|++.+.||.|++||++..+-........ .
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p----------~- 240 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP----------S- 240 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC----------C-
Confidence 9999999999873 345667899999999999854 468889999999999997543221111100 0
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECC-CCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 414 KRIISICREAAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
...+...++|++ |-+++++-.. ...|.+.|++....++..+.+|...+..+.
T Consensus 241 --------------------------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 241 --------------------------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred --------------------------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence 012344556655 4556666544 457999999998899999999999988877
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCc------eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGE------LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~------~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
+.. .....|++++.|.++.+||+...- ++..+. -.+.|+.+.|++..+..++.+.. +++.|
T Consensus 295 WaP--hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 295 WAP--HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecC--CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 654 356789999999999999987532 222233 46789999999887778877754 34443
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.5e-16 Score=151.05 Aligned_cols=241 Identities=13% Similarity=0.232 Sum_probs=170.7
Q ss_pred ceeccCCCCCceeeccCC-CCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC-------eee
Q 008005 237 CLFHNTSDSDFSLYSDHQ-CGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-------QVS 308 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~-------~~~ 308 (581)
.++..+.+..+.+|.-.. ........+++.+|.+|.++|.|++++++++.+.+|+.||+|+.|++..+. ...
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 344555666666665421 111223456788999999999999999999999999999999999765221 124
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
....+.||.+.|+.+++|+....|++|+.||+++.|+...... .+|... .+...++.+-.. .++-...+.....+
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~ 464 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYT 464 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc--hhHhhhhhcccccc
Confidence 5567889999999999999999999999999999999876655 334322 222334444322 21111222333333
Q ss_pred eC---CCCeEEeecc-------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCC
Q 008005 387 DL---DGRELESWKG-------QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK 454 (581)
Q Consensus 387 d~---~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~ 454 (581)
++ ....-..+.. .....+.-+.++|.+...+++..|+.|+++|..++. .....|...++++++.|+|-
T Consensus 465 ~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 465 SIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP 544 (577)
T ss_pred cchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc
Confidence 33 2211111111 112357788899999999999999999999999988 56678899999999999999
Q ss_pred EEEEEeeCCcEEEEEecCCCceeEEEe
Q 008005 455 YLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 455 ~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
+|++++.|+.+++|.+... .++....
T Consensus 545 ~l~s~s~d~sv~l~kld~k-~~~~es~ 570 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDVK-TCVLEST 570 (577)
T ss_pred eEEeecCCceeehhhccch-heeeccc
Confidence 9999999999999998765 4443333
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.3e-14 Score=145.13 Aligned_cols=233 Identities=13% Similarity=0.148 Sum_probs=164.4
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC---CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecC
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++..... .....+....|+||
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 3688888874322 234456678999999999999887643 357999999888654322 22334456899999
Q ss_pred CCeEEEE-eCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCe-eeEEecCCc
Q 008005 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 371 ~~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~ 443 (581)
|+.|+.. +.+| .|++||++++......... ..+....|+|||+.|+..+.+ + .|+.+|+.++. .........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988865 4444 5999999888776655443 367889999999999877754 3 56666777765 333334445
Q ss_pred eEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc---EEEEeCC
Q 008005 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ---VYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~---I~iwd~~ 517 (581)
.....|+|||++++..+.+ ..|.+||+.++ . ...+.... . .....++|+|++|+.++.++. ++++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~~-~---~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDTF-L---DETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCCC-C---CCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 6678999999999887653 35888998776 3 23333221 1 112334899999999888774 677776
Q ss_pred CCceEEEeccCCCCEEEEEEcC
Q 008005 518 TGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v~~l~~~p 539 (581)
+|.....+.+|.+.+...+|+|
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 5667777888989999999998
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.2e-14 Score=130.35 Aligned_cols=272 Identities=17% Similarity=0.220 Sum_probs=176.8
Q ss_pred cccceeccCCCCCceeeccCCCCcccccccceeecc-cccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCeeeE--
Q 008005 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSL-- 309 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~-- 309 (581)
+..|+.....|..+.+|++... +...++ .-...|+|++|-|.+ .-|+.|+..| |.||..........
T Consensus 109 H~~~fava~nddvVriy~ksst--------~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSST--------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCC--------CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 4445556677777888876542 122222 234679999999965 4677777666 99998753221111
Q ss_pred ---------EEEecCCCCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008005 310 ---------KHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 310 ---------~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
+....+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+|+++.-
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 1123345 68999999999999999986 568999999999887766566778889999999999999999
Q ss_pred CCcEEEEeC-CCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe----------eeE----------
Q 008005 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREANF----------ERW---------- 437 (581)
Q Consensus 380 dg~i~vwd~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~----------~~~---------- 437 (581)
|+..++|+. ++.....+..... .|...+|+|+|++|+.++. ...++-....... ...
T Consensus 259 davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred cceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 999999965 4444444444443 8999999999998766543 3333332222111 000
Q ss_pred E----ecCCceEEEEECCCCCEEEEEeeCCc--------EEEEEecCCCceeEEEeccccc--eeEEEeeecCCCCcEEE
Q 008005 438 I----EEEEVITSFSLSKDNKYLLVNLINQE--------IHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 438 ~----~~~~~i~~~~~sp~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 503 (581)
. -..+.+.+++|+|.|.+|++....+. |.+||.+........+-+.... ...|...+...++.+|.
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLs 417 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLS 417 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEE
Confidence 0 11467889999999999999876543 6677776642222222222211 11233333334556666
Q ss_pred EEeCCCcEEEEeC
Q 008005 504 SGSEDSQVYIWHR 516 (581)
Q Consensus 504 sgs~dg~I~iwd~ 516 (581)
.+=..|.+.-|++
T Consensus 418 iaWsTGriq~ypl 430 (445)
T KOG2139|consen 418 IAWSTGRIQRYPL 430 (445)
T ss_pred EEeccCceEeeee
Confidence 6655666655553
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=4.3e-15 Score=142.64 Aligned_cols=276 Identities=16% Similarity=0.233 Sum_probs=182.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee--eEEEEecCCCCCEEEEEe-----CCCCCeEEEeeCCCcEEEEEc
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSW-----SPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~-----sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+....++-.|++|+..- ...+++|+....... .+.+.+..-.+ ..|-+| .|.+--++.|-..|.|.+.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~-P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTS-PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCC-CceecccccccCCCCcceEEeeccCceEEecc
Confidence 444555556677776553 235888887632211 11111111122 223333 346666888888899999887
Q ss_pred CCCcEEEEEe----cCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 347 NSGECLHVYE----KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 347 ~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
...+..+.+. .....++++.|-|. ...++++-.+|.+++||..-. ... .-.+....+++..+.....
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~--t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA--TAPSYQALKDGDQFAILTS 274 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC--CCCcccccCCCCeeEEeee
Confidence 6533222221 12468999999994 456677788999999987210 000 0111122234444433221
Q ss_pred CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 422 dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
-+.. .++....+....+.|..++|+|||++|++.+.||.++|||..+. .++..++..-+. +.|+.|+|||+|
T Consensus 275 ksk~----~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGG---LLCvcWSPDGKy 346 (636)
T KOG2394|consen 275 KSKK----TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGG---LLCVCWSPDGKY 346 (636)
T ss_pred eccc----cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccc---eEEEEEcCCccE
Confidence 1100 01222445555668999999999999999999999999999886 555554444443 556677999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC-------------------------------C----------
Q 008005 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP-------------------------------A---------- 540 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-------------------------------~---------- 540 (581)
|++|++|--|.||.+...+.+..-.+|.+.|+.|+|.| +
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 99999999999999999999999999999999999983 0
Q ss_pred ------CCcEEEEEECCCcEEEecCCccccccc
Q 008005 541 ------NLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 541 ------~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
-.+.+.+++.|-.+.+||+....+.+.
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~~ 459 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVLVPH 459 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhcccC
Confidence 013688899999999999987776653
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.3e-14 Score=135.99 Aligned_cols=196 Identities=19% Similarity=0.209 Sum_probs=147.2
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeEE
Q 008005 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWI 438 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~ 438 (581)
.+++|+.+|..+++|+.||++++|+............+...|.++.|+|||+.|++.+.| ..++|+.+++. ..-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 578999999999999999999999966555444445555699999999999999999999 99999999985 1113
Q ss_pred ecCCceEEEEECCCC---CEEEEE--eeCCcEEEEEecCCCceeEEEe--ccccceeEEEeeecCCCCcEEEEEeCCCcE
Q 008005 439 EEEEVITSFSLSKDN---KYLLVN--LINQEIHLWSIESDPKLVSRYK--GHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~---~~l~~~--~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
..+.....+.|+.|+ .+++.+ ...+.|..||+...... ..+. ........+++...+++|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 344456677787776 333332 33566777776543221 1111 111111236666679999999999999999
Q ss_pred EEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 512 YIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 512 ~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
-|++..+.+.+... +.|...|+.+.|+|+. +.+++.+.|..+.+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 99999988877654 5799999999999998 7999999999999988765
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.1e-14 Score=149.10 Aligned_cols=228 Identities=14% Similarity=0.093 Sum_probs=157.5
Q ss_pred CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC
Q 008005 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---KSICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
+..|.+||..... .+.+..+...+.+..|+|||+.|+.++.+ ..|++||+.++......... .....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCC
Confidence 4689999986544 55666777789999999999999887654 36999999876544333222 2345789999999
Q ss_pred EEEEEE-cCCeE--EEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccccceeE
Q 008005 415 RIISIC-REAAI--LLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 415 ~l~~~~-~dg~i--~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
.|+.+. .+|.+ ++||+.++. .....+...+....|+|||+.|+.++ .++...+|++.........+ .+.. +
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~- 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y- 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C-
Confidence 988765 57754 555776655 44445566678899999999877665 46788888876543333333 2222 1
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC--ccccccc
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD--QINMKHR 567 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~--~~~~~~~ 567 (581)
...++|+|++|+.++.++ +.+||+.+++.......+ ...++.|+|+| .+|+.++.+|.+.+|.+. ++.....
T Consensus 337 --~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 337 --SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred --CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCceEE
Confidence 234599999998887765 666999888765433322 33567899999 689999999988888763 3443332
Q ss_pred c-----CCCceEEec
Q 008005 568 D-----QSNGIVHHC 577 (581)
Q Consensus 568 ~-----~~~~~~~~~ 577 (581)
. ....++|+|
T Consensus 411 l~~~~g~~~~p~wsp 425 (429)
T PRK01742 411 LPGSDGQVKFPAWSP 425 (429)
T ss_pred ccCCCCCCCCcccCC
Confidence 2 234566665
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.1e-12 Score=120.97 Aligned_cols=236 Identities=11% Similarity=0.125 Sum_probs=170.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--cEEEEEcCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNS 348 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--~i~vwd~~~ 348 (581)
....+..+.|+.+...|..|+.|| -++|+.....+ + .........|.-+-|+ ..++|..+.+. .++++++..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--~-~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--C-FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHH--h-hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence 345677788999999999999998 68888765432 1 1111122335555666 44666666543 489999888
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC---ccccEEEEEEeeCCCEEEEEE--cCC
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---KTLRISDMAITDDGKRIISIC--REA 423 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~--~dg 423 (581)
+..+..+.. ...|.++.++ .++|+++-.+. |+|||++..++...... +...+.++.+++.+.+++.-+ ..|
T Consensus 78 ~~~ICe~~f-pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 78 KTTICEIFF-PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred CceEEEEec-CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 877766644 3478888875 45677666654 99999988666544322 233466666666667877543 468
Q ss_pred eEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCc-EEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
.|.+||..+-. .....|.+.+.+++|+++|.+|++++..|+ |+++.+.++ +.+..|.-...... |....+++++.
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~-IySL~Fs~ds~ 231 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVS-IYSLSFSPDSQ 231 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeE-EEEEEECCCCC
Confidence 99999999877 566689999999999999999999999886 689999988 66666665444443 44455599999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 008005 501 FIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~ 518 (581)
+|++.|+.++|+||.+..
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 999999999999998653
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=143.87 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=176.3
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEE-EEEEec-------CCCeEEEEeCCCcEEEE
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFL-------DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~-------~~~~l~sg~~dg~i~vw 386 (581)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. ..........+. .+...+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466667899999887777766655555555554432 222222211111 111111 23468899999999988
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcE
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
+-. +.+......|.+.+.+-.|+|||.-|++++.||.|++|...... ........+|.|++|.|+.+.++.+. .+.+
T Consensus 91 ~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~ 168 (737)
T KOG1524|consen 91 NKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHI 168 (737)
T ss_pred ccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeE
Confidence 754 34444555667789999999999999999999999999977665 44456678899999999988776654 5677
Q ss_pred EEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEE
Q 008005 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 545 (581)
.+=.+..+ ..+-.++.|.+- +-++.|++..+++++|++|-..+|||. -|..+..-..|+.+|++++|+|+. .+
T Consensus 169 ~IKpL~~n-~k~i~WkAHDGi---iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~--~~ 241 (737)
T KOG1524|consen 169 SIKPLAAN-SKIIRWRAHDGL---VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEK--DY 241 (737)
T ss_pred EEeecccc-cceeEEeccCcE---EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecccc--ce
Confidence 77777666 445567888876 556667899999999999999999995 588888888999999999999984 55
Q ss_pred EEEECCCcEEEecCCccccccccCCCceEEecCCC
Q 008005 546 ASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G~ 580 (581)
+.+|. +++|+=..+ ....-++.|++||.
T Consensus 242 ~v~S~-nt~R~~~p~------~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 242 LLWSY-NTARFSSPR------VGSIFNLSWSADGT 269 (737)
T ss_pred eeeee-eeeeecCCC------ccceEEEEEcCCCc
Confidence 55554 355532222 22356677888874
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=8e-14 Score=128.35 Aligned_cols=236 Identities=13% Similarity=0.167 Sum_probs=172.7
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeEE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELE 394 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~ 394 (581)
...+..+.|+.+...|..|+.|| .++|+.+.-............|.-+-|+ ...++..+.+. .+++++++.+...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34567777999988888888887 5777766543322222333455555665 34555555443 5889998766554
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-ee----EEecCCceEEEEECCCCCEEEEEee--CCcEEE
Q 008005 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ER----WIEEEEVITSFSLSKDNKYLLVNLI--NQEIHL 467 (581)
Q Consensus 395 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~----~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~i 467 (581)
....... .|.++.++.+ +|+++-.+. |+|||+++.+ .. ...+...+..+++++.+.+++.-+. .|.|.+
T Consensus 82 Ce~~fpt-~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIFFPT-SILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEecCC-ceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 4433332 6888877644 566655544 9999999987 11 1234445666677777778887543 689999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccC--CCCEEEEEEcCCCCcE
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGH--SGSVNCVSWNPANLHM 544 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~ 544 (581)
||..+. +++..+..|.+. +.+..++++|.+|||+|+.| .|+||.+.+|+.+.+++-- ...|.+++|+|++ .+
T Consensus 158 ~d~~nl-~~v~~I~aH~~~---lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-~~ 232 (391)
T KOG2110|consen 158 FDTINL-QPVNTINAHKGP---LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-QF 232 (391)
T ss_pred EEcccc-eeeeEEEecCCc---eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-Ce
Confidence 999988 888999999998 55666699999999999999 5799999999999988743 3468899999999 69
Q ss_pred EEEEECCCcEEEecCCcccc
Q 008005 545 LASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~~~ 564 (581)
|++.|..++|+|+.+++...
T Consensus 233 L~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVSN 252 (391)
T ss_pred EEEecCCCeEEEEEeccccc
Confidence 99999999999999987663
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.9e-14 Score=131.81 Aligned_cols=191 Identities=17% Similarity=0.249 Sum_probs=142.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec-CCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCC--
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG-- 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~-- 349 (581)
.+..++|++.-..+|++..|-.|++|+-.... ...++ .....|+|++|-|.+ +.|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCC----CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 45678888866678889999999999976521 12222 234569999999965 45666655 56999976431
Q ss_pred --cE----------EEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE
Q 008005 350 --EC----------LHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 350 --~~----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.. +....+| .+|+++.|.+||..+++++. |..|.+||.+++..........+.++-+.|+||+.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1112233 68999999999999999885 5689999999888777776666689999999999999
Q ss_pred EEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 417 ISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.+++-|+..++|...... .++....+.|...+|+|+|++|+.+. .+.-++|.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~ 309 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLT 309 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEe
Confidence 999999999999655443 66666777999999999999888766 3444455543
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.7e-14 Score=137.33 Aligned_cols=279 Identities=11% Similarity=0.145 Sum_probs=195.7
Q ss_pred ccCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCeeeEEEEecCC--CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 271 HSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
|...-+.|..+|||+|+ |||...-.|++||+..- .+ .+.-| ...|...-.+.|-..++.-..|.+|.+...-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc---ee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 66777889999999975 56778889999999732 22 22333 3446666666665666666777777665422
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
|.. ..+... ..-.+++++.-.--|++++....|+-++++.+....-.......++++.+++....|++|+.+|.|.+
T Consensus 125 -G~h-y~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 125 -GRH-YRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred -Cee-eeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 221 111111 12345566554445666677778999999888877666666678999999999999999999999999
Q ss_pred EECCCCe-eeEEe-------cC-----CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008005 428 LDREANF-ERWIE-------EE-----EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 428 ~d~~~~~-~~~~~-------~~-----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
||.+... ...+. +. ..|+++.|+.+|-.+++|+.+|.+.|||+++...+...-.+..-+ .....|
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p--i~~l~~ 279 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP--IKKLDW 279 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc--eeeecc
Confidence 9998876 22221 22 239999999999999999999999999999974444333333333 333333
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
...++.-.+.......++|||-.+|+....+.. ...++.+|+-|++ .+++++-+++.+..|=+..
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence 222333333344556899999999999988875 4459999999998 5999999998887776654
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.6e-14 Score=133.74 Aligned_cols=244 Identities=16% Similarity=0.197 Sum_probs=186.7
Q ss_pred CCCCEEEEEeCCCCC--eEEEeeCCCcEEEEEcCCCcEEEEE------ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 316 HRKPVFTVSWSPNDH--QLLTCGQEEAIRRWDVNSGECLHVY------EKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 316 h~~~V~~l~~sp~~~--~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
....|..++|..+++ .+..++.+..+..+.+....+.... ......|..+... +..|++|..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345677888876553 4555546667777777666554433 2334556666543 45788899999999999
Q ss_pred CC-----CCeEEeeccCccccEEEEEEeeCCCEE-EEEEcC--CeEEEEECCCCeeeEEe-----------cCCceEEEE
Q 008005 388 LD-----GRELESWKGQKTLRISDMAITDDGKRI-ISICRE--AAILLLDREANFERWIE-----------EEEVITSFS 448 (581)
Q Consensus 388 ~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d--g~i~i~d~~~~~~~~~~-----------~~~~i~~~~ 448 (581)
.. ...+..+..+. .+..+.-++....+ ++|+.. ..+.+||+.+....+.. ..-+++.+.
T Consensus 132 ~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 87 33344443332 56667666665555 458888 88999999988644432 234578889
Q ss_pred ECCC--CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE-e
Q 008005 449 LSKD--NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-L 525 (581)
Q Consensus 449 ~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~ 525 (581)
|-+. ...|++++.-+.+++||.+.+.+++..+...... +.+....|++++|++|..-|.+..||.+.++.... +
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---ceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 9887 8899999999999999999998999998877766 44445578999999999999999999999998876 8
Q ss_pred ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 526 AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+-.+.|.++..+|.+ .++++||-|..|||+|+.+.++.+.
T Consensus 287 kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhh
Confidence 8999999999999998 5999999999999999999777654
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=144.48 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=162.6
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe-cCCCeEEEEEEec--CCCeEEEEeCCCcEEE
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICL 385 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~dg~i~v 385 (581)
....+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445689999999999999999999999999999999998888877664 7899999999999 5678899999999999
Q ss_pred EeCCC----------CeEEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCeee------------EEecCC
Q 008005 386 WDLDG----------RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFER------------WIEEEE 442 (581)
Q Consensus 386 wd~~~----------~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~ 442 (581)
+|+.. .+.......|..+|..++..|++ +.+.+++.||+|+-+|++..... .....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99973 12233334566688999999998 78999999999999999874311 111223
Q ss_pred ceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCc-----------------eeEEEe-ccc--------cceeEEEeeec
Q 008005 443 VITSFSLSK-DNKYLLVNLINQEIHLWSIESDPK-----------------LVSRYK-GHK--------RARFVIRSCFG 495 (581)
Q Consensus 443 ~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~-~~~--------~~~~~i~~~~~ 495 (581)
...++.++| +..+|++|+.+-..++||.+...+ .+..|. +|- .....++...+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 467899999 456899999999999999532100 122221 111 11223555566
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
+|+|.-|...-..-.|+++|+..++....+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 899887766666668999999887665433
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.9e-14 Score=147.02 Aligned_cols=245 Identities=16% Similarity=0.277 Sum_probs=176.4
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC---CCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCC--
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-- 390 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~-- 390 (581)
.+-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |...+++|+.||.|++|+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34567888888888999987889999999999998888755 45788888765 566799999999999997521
Q ss_pred ---CeEE-eecc------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e--eEEecCCceEEEEECC-CCCEE
Q 008005 391 ---RELE-SWKG------QKTLRISDMAITDDGKRIISICREAAILLLDREANF-E--RWIEEEEVITSFSLSK-DNKYL 456 (581)
Q Consensus 391 ---~~~~-~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~~~i~~~~~sp-~~~~l 456 (581)
.++. .+.. ...+.-.-+.|.....+|++++.-..|++||..... . ........++++.-+. .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 1221 1111 111111345666666677777778899999998876 2 2233455577765543 57999
Q ss_pred EEEeeCCcEEEEEecCCCc--eeEEEeccccceeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCCceE--EEeccCC--
Q 008005 457 LVNLINQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTGELV--LALAGHS-- 529 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~~~~--~~~~~h~-- 529 (581)
++|..||.|++||.+.... .+..+..|......+...+ .+.|- .|++|+.||.|++||++..... ..+..|.
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987544 6777888877633444433 33332 5999999999999999874222 2333343
Q ss_pred C-CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 530 G-SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 530 ~-~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+ ..+++..|++. .++|+|+. +.|+||++...++.
T Consensus 1304 Gs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1304 GSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred CccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc
Confidence 3 59999999998 59999988 99999999866543
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=2.4e-15 Score=141.85 Aligned_cols=264 Identities=13% Similarity=0.167 Sum_probs=203.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.-+.+.++.+|+.|+.|+..|.+-.+|+.+. .+...+. -...|.++.|-.+.+++|++- ...+.||| ..|..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEe
Confidence 3457889999999999999999999999875 3333333 345688999998888887764 56899999 5688888
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.++.+. .|..+.|.|..-.|++++..|.+..-|+..+++........+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus 205 Clk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 205 CLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred ehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 887764 7889999999888999999999999999999988877777778999999999999999999999999999887
Q ss_pred e--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcE
Q 008005 434 F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 434 ~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
. .....|.++|.++++.++|+|+++++.|..++|||+++-.++......+... ...+|. +-+++.+....|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~-----~ls~Sq--kglLA~~~G~~v 356 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPAS-----NLSLSQ--KGLLALSYGDHV 356 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcc-----cccccc--ccceeeecCCee
Confidence 7 7888999999999999999999999999999999999874433333323222 111133 334555566679
Q ss_pred EEEe-CCC--CceEEEeccC--CCCEEEEEEcCCCCcEEEEEECCC
Q 008005 512 YIWH-RYT--GELVLALAGH--SGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 512 ~iwd-~~~--~~~~~~~~~h--~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
.||. .-. +.....+-.| .+.|.++.|.|-. .+|-.|-..|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCC
Confidence 9995 222 1222222233 4589999999976 4555554444
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.7e-13 Score=140.67 Aligned_cols=233 Identities=16% Similarity=0.134 Sum_probs=161.5
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEecC
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||..... ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ........+..|+||
T Consensus 184 ~~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 468889886432 23455677789999999999999987743 4699999988876433 333444557899999
Q ss_pred CCeEEE-EeCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-CC--eEEEEECCCCee-eEEecCCc
Q 008005 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EA--AILLLDREANFE-RWIEEEEV 443 (581)
Q Consensus 371 ~~~l~s-g~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~-~~~~~~~~ 443 (581)
|+.++. .+.+| .|++||+.++......... ......+|+|||+.++.++. ++ .|+++|+.++.. ........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 998764 45555 5999999888766554432 24567899999999887764 34 477788776653 33333344
Q ss_pred eEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEEEEeCC
Q 008005 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~ 517 (581)
....+|+|||++++..+.++ .|.+||+.++ ... .+.... .. . ...++|+|++|+..+.+ +.|++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~-~~--~-~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGS-LD--E-SPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCC-CC--C-CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998876543 5899999776 332 332211 11 1 23458999988776653 368888874
Q ss_pred CCceEEEeccCCCCEEEEEEcC
Q 008005 518 TGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v~~l~~~p 539 (581)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 555666766677788888987
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.5e-13 Score=137.74 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=155.7
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEecC
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.... ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+||
T Consensus 176 ~~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 35666666422 123345677889999999999999887643 359999999887644 3333445678999999
Q ss_pred CCeEEE-EeCCCcEEEE--eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEE--EECCCCee-eEEecCCc
Q 008005 371 GGGIFA-GMTDKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILL--LDREANFE-RWIEEEEV 443 (581)
Q Consensus 371 ~~~l~s-g~~dg~i~vw--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i--~d~~~~~~-~~~~~~~~ 443 (581)
|+.|+. .+.+|...+| |+.++....... +........|+|||+.++..+. ++...+ ++..++.. ........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998874 5667765555 555555544433 2234567889999999887664 344444 45555442 22223334
Q ss_pred eEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC---cEEEEeCC
Q 008005 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~ 517 (581)
.....|+|||++++..+.++ .|.+||+.++ .. ..+..... .....|+|+|+.|+..+.++ .+++.+.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~~~----~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QV-TALTDTTR----DESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCCCC----ccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 55688999999998877654 5999999876 32 23322211 12334589999888777654 4666666
Q ss_pred CCceEEEeccCCCCEEEEEEcCC
Q 008005 518 TGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v~~l~~~p~ 540 (581)
++.....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 56667777777788888999884
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.2e-13 Score=124.77 Aligned_cols=232 Identities=13% Similarity=0.148 Sum_probs=175.6
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC-CC
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL-DG 390 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~-~~ 390 (581)
--..+|+|.+|++|...+|++.....|.||.....+ ..++++.|+..|+++.|.|..+.|++++.|..-++|.. .+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999987654 67889999999999999999999999999999999998 54
Q ss_pred CeEEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee------eEEecCCceEEEEECCCCCEEEEEeeC
Q 008005 391 RELES--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE------RWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 391 ~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
++... .........+++.|+|.++.+++++....|.+|-.+.... ........|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 44322 2223344799999999999999999999999998877662 234567789999999999999999999
Q ss_pred CcEEEEEec-----CCC------------ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc-eEEE
Q 008005 463 QEIHLWSIE-----SDP------------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLA 524 (581)
Q Consensus 463 ~~i~iwd~~-----~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~ 524 (581)
+..+++..- ..+ .++..+. ....+ +....++|.|..|+-.+.|..+.+-|..... .+..
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggw-vh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGW-VHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCc-eeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999998752 110 1111222 12223 3333449999999999999999999976654 3333
Q ss_pred eccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 525 LAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 525 ~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+..-.-+..++.|-.+. .++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCC--ceeecCCC
Confidence 33333667777776544 35555555
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.5e-13 Score=137.64 Aligned_cols=213 Identities=13% Similarity=0.163 Sum_probs=147.3
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEe---CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCC--
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEE-- 339 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg-- 339 (581)
+.+..+...+.+.+|||||+.|+..+ .+..+.+|++.++. ...+..+.+ .+..+.|+|||+.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCc
Confidence 34455677899999999999988754 34579999987643 223333333 34568999999988865 4444
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.|.+||+.+++.... ..+...+....|+||++.|+..+.+ + .|+++|+.++........ ........|+|||+++
T Consensus 268 ~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 268 NLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEE
Confidence 588999998876544 3444567889999999998877654 3 456667777655444322 2245678999999999
Q ss_pred EEEEcC---CeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCc---EEEEEecCCCceeEEEeccccc
Q 008005 417 ISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQE---IHLWSIESDPKLVSRYKGHKRA 486 (581)
Q Consensus 417 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~ 486 (581)
+..+.+ ..|.+||+.++....+..........|+|||++|+.++.++. +.++++.. .....+.++.+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~ 419 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQ 419 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCC
Confidence 887654 358899998877444433333457889999999999988764 56667654 344555555443
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.2e-13 Score=135.38 Aligned_cols=233 Identities=11% Similarity=0.066 Sum_probs=161.1
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC---CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecC
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.... ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 46888887533 22345678889999999999999888764 468999999988754 34455566778999999
Q ss_pred CCeEE-EEeCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCe-eeEEecCCc
Q 008005 371 GGGIF-AGMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 371 ~~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~-~~~~~~~~~ 443 (581)
|+.|+ +.+.++ .|++||+.++......... .......|+|||+.++..+. + ..|+++|..++. .........
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 99876 445555 4888899887776654433 35667899999999987764 3 368899988766 333334556
Q ss_pred eEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC------CcEEEE
Q 008005 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED------SQVYIW 514 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d------g~I~iw 514 (581)
+....|+|||++|+....+ ..|.+||+.+. . ...+... .. .....|+|+|+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~~-~~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTSG-FL---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccCC-CC---CCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 7778999999999887653 35788887654 2 2333221 11 2234458999988765543 358888
Q ss_pred eCCCCceEEEeccCCCCEEEEEEcCC
Q 008005 515 HRYTGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 515 d~~~~~~~~~~~~h~~~v~~l~~~p~ 540 (581)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8866554 4444 3455777888873
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4.3e-15 Score=140.22 Aligned_cols=229 Identities=14% Similarity=0.161 Sum_probs=191.2
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 398 (581)
.-..+.++.+|.+|+.|+..|.|..+|+.+++....+... ..|.++.|..+..+++++ ....+++||-.+.++.....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhh
Confidence 3467889999999999999999999999999988877554 468889998877666665 56789999998888888776
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCce
Q 008005 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.. .|..+.|.|..-.|++++..|.+..-|+.++. ..+....+.+..++-+|-+..+-+|..+|+|.+|..... .+
T Consensus 209 ~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-eP 285 (545)
T KOG1272|consen 209 HI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EP 285 (545)
T ss_pred cC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-ch
Confidence 65 79999999999999999999999999999988 455566778889999999999999999999999998887 77
Q ss_pred eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008005 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
+..+..|.+++..+ ...++|.|++|.+.|..++|||++....+.++.. .-+...+++|..| +| .+|....|.|
T Consensus 286 LvKiLcH~g~V~si---Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~i 358 (545)
T KOG1272|consen 286 LVKILCHRGPVSSI---AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQI 358 (545)
T ss_pred HHHHHhcCCCcceE---EECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ce-eeecCCeeee
Confidence 77777888885554 4489999999999999999999998876666654 4567788999877 44 4555668999
Q ss_pred ecC
Q 008005 557 WGL 559 (581)
Q Consensus 557 W~~ 559 (581)
|.=
T Consensus 359 w~d 361 (545)
T KOG1272|consen 359 WKD 361 (545)
T ss_pred ehh
Confidence 963
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=4.9e-13 Score=121.89 Aligned_cols=247 Identities=18% Similarity=0.310 Sum_probs=176.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC--eeeEEEEecCCC------------CCEEEEEeCCCC--CeEEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHR------------KPVFTVSWSPND--HQLLT 334 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~V~~l~~sp~~--~~l~s 334 (581)
..+-|.++.|...|.+||||..+|.|.++.-.... .+.....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44678999999999999999999999999754321 334555565564 358889999865 45777
Q ss_pred eeCCCcEEEEEcCCCc-----------------------------------EEEEE-ecCCCeEEEEEEecCCCeEEEEe
Q 008005 335 CGQEEAIRRWDVNSGE-----------------------------------CLHVY-EKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~-----------------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
.+.|.+|++|.+.... +.+.+ ..|...|.++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8899999999875321 11111 2467778999999998888776
Q ss_pred CCCcEEEEeCCC----CeEEeeccCc----cccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-----eeEE------
Q 008005 379 TDKSICLWDLDG----RELESWKGQK----TLRISDMAITDD-GKRIISICREAAILLLDREANF-----ERWI------ 438 (581)
Q Consensus 379 ~dg~i~vwd~~~----~~~~~~~~~~----~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~~------ 438 (581)
.|=.|.+|+++- -.+...++.. ..-|++..|+|. .+.++..++.|+|++.|++... ....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 567899999852 2233333322 124788889885 5678888999999999998543 1111
Q ss_pred -------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc------------ceeEEEeeecCCCC
Q 008005 439 -------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARFVIRSCFGGFEQ 499 (581)
Q Consensus 439 -------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~ 499 (581)
+--..|..+.|+++|+|+++-. --+|++||+....+++.++..|.. .++.---|.++.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1124578899999999998743 468999999877788888887753 22222223447788
Q ss_pred cEEEEEeCCCcEEEEeCCCC
Q 008005 500 AFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~ 519 (581)
.+++||+.....++|+...|
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 89999999999999996555
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.4e-13 Score=137.74 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=149.4
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEE-EeeCC
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQE 338 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~d 338 (581)
...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.|+ +.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEecC
Confidence 344567778889999999999999888763 46899999976532 23445666778899999998875 45555
Q ss_pred Cc--EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCC
Q 008005 339 EA--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 339 g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
+. |.+||+.+++.. .+..+........|+||++.++..+. +| .|+++|+.++........ ...+....|+|+|
T Consensus 268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG 345 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRG 345 (435)
T ss_pred CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCC
Confidence 54 777798887654 45555556677899999999887764 33 688889887766555433 2356678899999
Q ss_pred CEEEEEEcC---CeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeC------CcEEEEEecCC
Q 008005 414 KRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------QEIHLWSIESD 473 (581)
Q Consensus 414 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~ 473 (581)
+.++....+ ..|.+||+.++..........+....|+|||+.|+..+.+ ..++++|+.+.
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 999887653 3688899876664444444457788999999998876653 25777777654
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=7.7e-13 Score=135.75 Aligned_cols=202 Identities=18% Similarity=0.146 Sum_probs=143.2
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEE-EeeCCC-
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg- 339 (581)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.++.. . .+..+.+...+.+|+|||+.|+ +.+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 44566678889999999999999987643 4699999976532 2 2233344456789999998775 445555
Q ss_pred -cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
.|.+||+.+++.. .+..+.......+|+||++.++.++. +| .|+++|+.++........ .......+|+|+|+.
T Consensus 272 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 272 PEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKK 349 (433)
T ss_pred ceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCE
Confidence 5999999888754 34444445567899999998887764 44 477778777665444322 223457899999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecC
Q 008005 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIES 472 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~ 472 (581)
++..+.++ .|.+||+.++......+........|+|||++++..+.+ +.|.++++..
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 98876543 699999988775444444455678999999998887763 3577777754
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=3.1e-13 Score=123.27 Aligned_cols=249 Identities=13% Similarity=0.168 Sum_probs=179.0
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
+..++.++||.+.|+....-|...-+++.+.|.+++||--.+.++.-. ........+++++.+.++...|++|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 345778999999999999999888899999999999997654443211 1223356779999999999999999999999
Q ss_pred EEEEcC----CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EeeccCccccEEEEEEeeCCCEE
Q 008005 342 RRWDVN----SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 342 ~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
.-+.+. .....+.+..|...+..+.|+.....+++.+.|..+.-.-.+.+.- -...... ..+++.+.-. +.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--YA 168 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--EE
Confidence 888653 3455667778899999999998889999999988765444332221 1100000 0111111111 34
Q ss_pred EEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 417 ISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
..|...|.|.+..+.... ..+.+|.+.+++++|.|....|.+|..|..+.+||+.........+.+|...+..+..
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 445555655555444332 5566888999999999999999999999999999998877777778888776443322
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
-+.-+.+++++.||.|.+|+.+.
T Consensus 249 ---~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 249 ---AQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ---hhhheeeeeccCCCeEEEEeccc
Confidence 34557789999999999998653
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.9e-14 Score=134.65 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=191.9
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe-cCCCeEEEEEEec--CCCeEEEEeCCCcEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSIC 384 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~dg~i~ 384 (581)
.+...+..|.+.|..+.|+..|..|++++.|..|.+||+.+++....+. +|...|....|.| +...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3445688999999999999999999999999999999999988776664 6777888888888 456799999999999
Q ss_pred EEeCC-CCeE--EeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe--ee--EE-ecCC---ceEEEEECCC
Q 008005 385 LWDLD-GREL--ESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF--ER--WI-EEEE---VITSFSLSKD 452 (581)
Q Consensus 385 vwd~~-~~~~--~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~--~~-~~~~---~i~~~~~sp~ 452 (581)
+=.+. ++.+ ......|.++|..++.-|+. ..|.+++.|+.+.-+|++... .. .. .... ...+++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 88773 2222 33445666799999999875 468899999999999998866 11 11 1222 4678889995
Q ss_pred CC-EEEEEeeCCcEEEEEecCCCce-----eEEEeccc---cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC--C--
Q 008005 453 NK-YLLVNLINQEIHLWSIESDPKL-----VSRYKGHK---RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT--G-- 519 (581)
Q Consensus 453 ~~-~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~---~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~--~-- 519 (581)
.. .+++++.|..+++||.+.-.+. +..+..+. .....|.++.++.++.-+.+.-.|-.|+++.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 8999999999999998753221 22222221 2223455666676776677777788899996332 2
Q ss_pred --------ceEEE-eccCC--CCEEEEEE-cCCCCcEEEEEECCCcEEEecCCcccccccc
Q 008005 520 --------ELVLA-LAGHS--GSVNCVSW-NPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 520 --------~~~~~-~~~h~--~~v~~l~~-~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
..+.. +++|. ..|.++-| -|.. .++++||+=|.|.||+-.+++++...
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHHHHh
Confidence 22333 78885 45777774 5666 69999999999999999998877543
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.2e-12 Score=133.96 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=137.1
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEE-EeeCCCc
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg~ 340 (581)
.+.+..+...+.+.+|||||+.|+..+.+ ..|.+||+.++.. .. +....+.+.+.+|+|||+.|+ +.+.+|.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~---l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV---VANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE---eecCCCCccceEECCCCCEEEEEEccCCC
Confidence 34455678889999999999999887643 4599999986532 22 233344567899999999886 4677887
Q ss_pred EEEEE--cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEE--eCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 341 IRRWD--VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 341 i~vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vw--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
..||. +.++. ...+..+........|+|||+.++..+. +|...+| ++.++........ .......+|+|||++
T Consensus 264 ~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 264 SQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKL 341 (427)
T ss_pred ceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCE
Confidence 66665 44444 4455555555667889999998886654 4555555 4455544333222 123446789999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEec
Q 008005 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIE 471 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~ 471 (581)
++..+.++ .|.+||+.++...............|+|||+.|+.++.++ .+.+.++.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 99877654 6999999887744444444457789999999998887654 34455553
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=7.8e-13 Score=122.76 Aligned_cols=262 Identities=18% Similarity=0.208 Sum_probs=187.6
Q ss_pred ccCcEEEEEEcCCCC--EEEEEeCCCeEEEEEcccCCeeeE---EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 271 HSDEVWFLQFSHDGK--YLASSSKDQSAIIWEVKEDGQVSL---KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 271 h~~~V~~l~~s~~g~--~lasgs~dg~i~iwd~~~~~~~~~---~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
-...|..++|..+++ .+...+.|..+..+.+....-... .........+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446777888877665 555555677777777764421111 12334556677777665 34788889999999999
Q ss_pred cCCCc----EEEEEecCCCeEEEEEEecCCCe-EEEEeCC--CcEEEEeCCCCeEEeecc--Cc--------cccEEEEE
Q 008005 346 VNSGE----CLHVYEKTGVGLISCGWFLDGGG-IFAGMTD--KSICLWDLDGRELESWKG--QK--------TLRISDMA 408 (581)
Q Consensus 346 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d--g~i~vwd~~~~~~~~~~~--~~--------~~~i~~i~ 408 (581)
...+. ....+..+ .++..+.-.+.... +++|+.. ..+.+||+...+ ..|.. .. ...++++.
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccceeeeeeccce
Confidence 88443 22233332 35556665664444 5558888 889999997652 22221 11 12467888
Q ss_pred EeeC--CCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 409 ITDD--GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 409 ~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
|.+. ...|++++.-+.+++||.+.+. ..+.....+++++...|+++++++|..-+.+..||++.+.-....+.+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 9888 8899999999999999999766 4555568889999999999999999999999999999985555558888
Q ss_pred ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCC
Q 008005 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~ 540 (581)
.+.+..+.+ +|...++++++-|..|+|+|+.+.+++..... .+.++++-+.++
T Consensus 290 tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 887666655 78889999999999999999999777655442 345677766553
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.6e-12 Score=121.99 Aligned_cols=274 Identities=15% Similarity=0.251 Sum_probs=174.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-----eC-----CCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-----GQ-----EEAIR 342 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-----~~-----dg~i~ 342 (581)
..+...++|++|+++|.+. +..++|++..... ...+... ..+.++.|+|-+.+|.+- .. .-.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 3467888999999888775 6679999988654 1222221 268999999999988763 11 23578
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC----------
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD---------- 412 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~---------- 412 (581)
+|+++++.....+......-++..|+.|... ++--..+.+.+|++.+....... .+...|+.+.++|.
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEc
Confidence 9999996555555443222257778776543 22223456777776542211111 11123444444433
Q ss_pred ------------------------------------------CCEE-EEEEc-----------CCeEEEEECCCCe-eeE
Q 008005 413 ------------------------------------------GKRI-ISICR-----------EAAILLLDREANF-ERW 437 (581)
Q Consensus 413 ------------------------------------------~~~l-~~~~~-----------dg~i~i~d~~~~~-~~~ 437 (581)
|+-| +.++. ..+++++++.+.. ..-
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP 266 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence 3221 11111 1244555544322 222
Q ss_pred EecCCceEEEEECCCCCEEEE--EeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEE
Q 008005 438 IEEEEVITSFSLSKDNKYLLV--NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVY 512 (581)
Q Consensus 438 ~~~~~~i~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~ 512 (581)
....++|.++.|+|+++-+++ |..-..+.|||++. .++..+..... ..++++|.|++|+.++-+ |.|-
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df~egpR-----N~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDFPEGPR-----NTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeCCCCCc-----cceEECCCCCEEEEeecCCCCCceE
Confidence 344789999999999987766 45577999999987 44544443322 245669999999888764 6999
Q ss_pred EEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC------CCcEEEecCCcccc
Q 008005 513 IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD------DRTIRIWGLDQINM 564 (581)
Q Consensus 513 iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~iW~~~~~~~ 564 (581)
|||+.+.+++..+..-. -+-+.|+||| .+++|+.. |+.++||++....+
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCcee
Confidence 99999999988887643 4567899999 67777764 78999999975443
No 231
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.53 E-value=2.7e-13 Score=119.24 Aligned_cols=270 Identities=14% Similarity=0.163 Sum_probs=180.8
Q ss_pred HHHHccccceeccCCCCCceeeccCCCCcccccccceeecc-cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee
Q 008005 229 ALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV 307 (581)
Q Consensus 229 ~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~ 307 (581)
++-+|-...++.....+.+.+|.-. ..+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++....-+
T Consensus 19 s~~fqa~~rL~sg~~~G~V~~w~lq-------t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 19 SVLFQANERLMSGLSVGIVKMWVLQ-------TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred ehhhccchhhhcccccceEEEEEee-------cCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE
Confidence 3445555567777777777777432 223344566 57789999999898 46888889999999999754221
Q ss_pred eEEEEecCCCCCEEEEEeCCC-----CC----eEEEeeCCC-cEEEEEcCCCcEEEEEe----cCCCeEEEEEEec-CCC
Q 008005 308 SLKHRLSGHRKPVFTVSWSPN-----DH----QLLTCGQEE-AIRRWDVNSGECLHVYE----KTGVGLISCGWFL-DGG 372 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~-----~~----~l~s~~~dg-~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~ 372 (581)
..|.-.++++-|.+. ++ .++.-+... .+.+-|......+.... ...+.+.+..|.. ++.
T Consensus 91 ------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 91 ------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred ------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 223344555555441 11 111111100 01222221111222111 1234566665433 233
Q ss_pred --eEEEEeCCCcEEEEeCCCCe----------EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------
Q 008005 373 --GIFAGMTDKSICLWDLDGRE----------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ 434 (581)
Q Consensus 373 --~l~sg~~dg~i~vwd~~~~~----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------ 434 (581)
.+++|..+|.|.+||+.++. ...-...+..+|.++.+.+....=++++.+..+..|++....
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 36678899999999998752 222233455689999999877777888888899999887653
Q ss_pred eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
....-.+..+..+.+-||++.+++++-|+.|++|..++. .++..++.|... +.+..++|+..++|+++.|++|.+|
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsag---vn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAG---VNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhhhhhcc---eeEEEeCCCCchhhhccCCceEEee
Confidence 222334556889999999999999999999999999998 889999999976 4455559999999999999999999
Q ss_pred eC
Q 008005 515 HR 516 (581)
Q Consensus 515 d~ 516 (581)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=2.1e-10 Score=113.95 Aligned_cols=263 Identities=16% Similarity=0.238 Sum_probs=173.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeC----CCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-CCcEEEEE
Q 008005 272 SDEVWFLQFSHDGKYLASSSK----DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd 345 (581)
......++++|++++|.+... ++.|..|++... +.+..+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345567889999999988876 579999999876 667666666544455678999999999998875 88999999
Q ss_pred cCC-CcEEEE---Ee----------cCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCe--E---EeeccCccccEE
Q 008005 346 VNS-GECLHV---YE----------KTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRE--L---ESWKGQKTLRIS 405 (581)
Q Consensus 346 ~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~--~---~~~~~~~~~~i~ 405 (581)
+.. |..... +. .......++.++|+++++++... ...|.+|+++... + ...........+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 443322 21 12345788999999999888654 4479999986543 3 222334445789
Q ss_pred EEEEeeCCCEEEEEEc-CCeEEEEECC--CCeeeE---Ee-------cCCceEEEEECCCCCEEEEEee-CCcEEEEEec
Q 008005 406 DMAITDDGKRIISICR-EAAILLLDRE--ANFERW---IE-------EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE 471 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~---~~-------~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~ 471 (581)
.++|+|+++++++.+. ++.|.++++. ++.... .. .......+.++|||++|+++.. .+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9999999999877764 6789999887 333111 11 1125778999999999988765 6689999994
Q ss_pred CC-Cce--eEEEeccccceeEEEeeecCCCCcEEEEEeC-CCcEEEEeC--CCCceEEEec-cCCCCEEEEEE
Q 008005 472 SD-PKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHR--YTGELVLALA-GHSGSVNCVSW 537 (581)
Q Consensus 472 ~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~--~~~~~~~~~~-~h~~~v~~l~~ 537 (581)
.. ..+ +..+... ... -+.+.++|+|++|+++.. ++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~--G~~-Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTG--GKF-PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEES--SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCC--CCC-ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 32 122 2222221 111 223333899999988875 568999875 5666544332 22345667665
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.7e-12 Score=128.84 Aligned_cols=279 Identities=20% Similarity=0.292 Sum_probs=206.5
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC------------eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
.....|++|+....|+|.|+.||.+++..+.+.. .+...+++.||...|.-+.|+.+.+.|-|...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456799999999999999999999999876421 2334567889999999999999999999999999
Q ss_pred cEEEEEcCCCcEEEEE--ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 340 AIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
.|.||-+-.|.-...+ ......|.+++|+.||..+.....||.|.+=.+++..+-...-. ......+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-GQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-hheccceeecccHHHHH
Confidence 9999998877543322 23456789999999999999999999999988877655322211 11456789999999999
Q ss_pred EEEcCCeEEEEECCCCee-------------eEEecCCceEEEEEC--------CCCCEEEEEeeCCcEEEEEecCCCce
Q 008005 418 SICREAAILLLDREANFE-------------RWIEEEEVITSFSLS--------KDNKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~~-------------~~~~~~~~i~~~~~s--------p~~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.+-.+|.+.+||...... .+......+..+.|. ||...|+++..+|.+.+..-.+.+.+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 998999999999876541 011122335556553 58889999999999999877776555
Q ss_pred eEEEeccccceeEEEeeecCCCCcEEEEEeCCC---------cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---------QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---------~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
+..-.+. .+.-.-|+++|.+++.++.+. .|.+|. .-|+.+.+++.....|++++|-..| -.++.
T Consensus 253 vv~dtgm-----~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g-LriA~ 325 (1189)
T KOG2041|consen 253 VVVDTGM-----KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG-LRIAI 325 (1189)
T ss_pred eEEeccc-----EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc-eEEEE
Confidence 5443332 233445689999999988642 456665 4578888898888999999998776 33333
Q ss_pred EECCCcEEEecC
Q 008005 548 ASDDRTIRIWGL 559 (581)
Q Consensus 548 ~s~Dg~I~iW~~ 559 (581)
+ -|+.|.+=++
T Consensus 326 A-vdsfiyfanI 336 (1189)
T KOG2041|consen 326 A-VDSFIYFANI 336 (1189)
T ss_pred E-ecceEEEEee
Confidence 3 4555554333
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=3.5e-10 Score=112.35 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=180.0
Q ss_pred EEEEeCC----CeEEEEEcc-cCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----CCcEEEEEcCCC--c--EEE
Q 008005 287 LASSSKD----QSAIIWEVK-EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----EEAIRRWDVNSG--E--CLH 353 (581)
Q Consensus 287 lasgs~d----g~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----dg~i~vwd~~~~--~--~~~ 353 (581)
++.|+.. +.|.+|+++ ..+.+....... .......++++|++++|.++.. ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 689999983 345555555433 3344677899999999998876 568999988764 3 333
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCC-CeEEee---c----------cCccccEEEEEEeeCCCEEEE
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG-RELESW---K----------GQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~-~~~~~~---~----------~~~~~~i~~i~~~~~~~~l~~ 418 (581)
...........++.+|++++++++.. +|.|.++++.. +.+... . ........++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 34334556678999999999998875 88999999975 333222 1 122346789999999999887
Q ss_pred EEc-CCeEEEEECCCCe--e-----eEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC-c--eeEEEecc---
Q 008005 419 ICR-EAAILLLDREANF--E-----RWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP-K--LVSRYKGH--- 483 (581)
Q Consensus 419 ~~~-dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~-~--~~~~~~~~--- 483 (581)
... ...|.+|++.... . ...........+.|+|+++++++... ++.|.+|++.... . .+......
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 754 4589999987654 1 12345566889999999999877765 7789999998321 2 12222211
Q ss_pred -ccceeEEEeeecCCCCcEEEEEeC-CCcEEEEeCC--CCce--EEEeccCCCCEEEEEEcCCCCcEEEEE-ECCCcEEE
Q 008005 484 -KRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRY--TGEL--VLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRI 556 (581)
Q Consensus 484 -~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~--~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~i 556 (581)
..... ...+..+|+|++|+++.. .+.|.+|++. ++++ +..+.........++++|+|. +|+++ -.++.|.+
T Consensus 241 ~~~~~~-~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 241 FTGENA-PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTVSV 318 (345)
T ss_dssp SCSSSS-EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEEEE
T ss_pred ccccCC-ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeEEE
Confidence 11111 222334899999887664 5689999983 3443 334443344589999999994 55555 47789999
Q ss_pred ecCC--cccccc
Q 008005 557 WGLD--QINMKH 566 (581)
Q Consensus 557 W~~~--~~~~~~ 566 (581)
|+++ ++.+..
T Consensus 319 f~~d~~tG~l~~ 330 (345)
T PF10282_consen 319 FDIDPDTGKLTP 330 (345)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 9874 555543
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=1.2e-11 Score=112.36 Aligned_cols=304 Identities=14% Similarity=0.207 Sum_probs=196.2
Q ss_pred cceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEE-EeCCCeEEEEEcccCCeeeEEEEec
Q 008005 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~las-gs~dg~i~iwd~~~~~~~~~~~~~~ 314 (581)
.|.|++......++..-+-..++....+..+.+.. -+.|..+.|..|..+++. ...|+.|.+|++... .-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEec
Confidence 35555544433333333333334444444444432 467888999998876554 568889999999744 3445667
Q ss_pred CCCCCEEEEEeCCCCCe-EEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-------------
Q 008005 315 GHRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------------- 380 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------------- 380 (581)
....++.+++|||||+. |.+...+-.|.||.+.+.+... +...+..+..++|+|||++.+..+.-
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 77888999999999955 5566779999999998877543 23334456778888888776654331
Q ss_pred -----------------------CcEEEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--
Q 008005 381 -----------------------KSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-- 434 (581)
Q Consensus 381 -----------------------g~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 434 (581)
..+.+||.-- .++. .....-.+..++|+|.++++++|+.|+.+++.+--+-+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 1233444211 1111 11222368899999999999999999988875421100
Q ss_pred -------------------------------eeE----------------------------E-------ecCCceEEEE
Q 008005 435 -------------------------------ERW----------------------------I-------EEEEVITSFS 448 (581)
Q Consensus 435 -------------------------------~~~----------------------------~-------~~~~~i~~~~ 448 (581)
..+ . ...-.+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 000 0 0012355689
Q ss_pred ECCCCCEEEEEee--CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008005 449 LSKDNKYLLVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 449 ~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 526 (581)
|++|..++++-.. .+.+-+||++.. +....+. ...+ ++...|.|....++.+.....+++|...-...+ ...
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLi-Qk~p---iraf~WdP~~prL~vctg~srLY~W~psg~~~V-~vP 399 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVLI-QKHP---IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVP 399 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhh-hhhhhhh-hccc---eeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ecC
Confidence 9999999888654 357899999875 3322222 2222 666667888888888777788999986543333 333
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 527 GHSGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 527 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
+..-.|..+.|+-+| ..++-++.|..
T Consensus 400 ~~GF~i~~l~W~~~g-~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPG-EFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCC-cEEEEEcCCce
Confidence 344679999999999 68888888864
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=1.3e-11 Score=111.80 Aligned_cols=235 Identities=15% Similarity=0.228 Sum_probs=155.8
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCC--CeEEEEEEecCCCeE-EEEeCC------CcEEEEeCCC
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG--VGLISCGWFLDGGGI-FAGMTD------KSICLWDLDG 390 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l-~sg~~d------g~i~vwd~~~ 390 (581)
...++|+.|..-++++..+| .+||+.+--+.......+. -.+.-+-|- .+++ ++|+.+ +.|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 44599999988888877665 8999987533221111111 222223332 2333 344433 4799999433
Q ss_pred CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEE---ecCCceEEEEECCCCCEEEE-EeeCCc
Q 008005 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI---EEEEVITSFSLSKDNKYLLV-NLINQE 464 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~---~~~~~i~~~~~sp~~~~l~~-~~~d~~ 464 (581)
......... ..+|.++.+.++ .+++. ..+.|++|...+.. ...+ ..+....+++-..+..+|+. |..-|.
T Consensus 85 ~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 332222222 337999999876 44443 56789999988543 2222 22233444433334444444 344789
Q ss_pred EEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc-EEEEeCCCCceEEEecc--CCCCEEEEEEcCC
Q 008005 465 IHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ-VYIWHRYTGELVLALAG--HSGSVNCVSWNPA 540 (581)
Q Consensus 465 i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~ 540 (581)
|++-|+..... ....+..|... |.+.....+|..+||+|..|+ |+|||..+|+.+.+++- ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~---Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSD---IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCc---eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999987532 35678888887 555555889999999999995 79999999999998864 2467999999999
Q ss_pred CCcEEEEEECCCcEEEecCCccccc
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
. .+|+.+|+-|+|+|+.+......
T Consensus 238 ~-s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 238 S-SWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred c-cEEEEEcCCCeEEEEEeecCCCC
Confidence 9 79999999999999999875533
No 237
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.3e-12 Score=121.61 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=180.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-----------CcEEE
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----------EAIRR 343 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----------g~i~v 343 (581)
=+-+.|||-|.||+|-..-| |.+|--.+ +..++.+. |. .|..+.|||+.+||+|-+.. ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45789999999999998777 89996433 23333332 54 48999999999999997531 46999
Q ss_pred EEcCCCcEEEEEecC--CCeE-EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 344 WDVNSGECLHVYEKT--GVGL-ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 344 wd~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
||+.+|...+.|... ...+ .-..|+.|+++++.-.. ..|.||+...-.+.......-..|....|+|.++.|+.=+
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999988888763 2223 23579999998887665 5688888766554444444444666777777666555322
Q ss_pred cC----------------Ce-----------------------------------------EEEEECCCCe--eeEEecC
Q 008005 421 RE----------------AA-----------------------------------------ILLLDREANF--ERWIEEE 441 (581)
Q Consensus 421 ~d----------------g~-----------------------------------------i~i~d~~~~~--~~~~~~~ 441 (581)
.. .. +-|+.++... .......
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11 01 1111111111 1112334
Q ss_pred CceEEEEECCCCCEEEEEee---CCcEEEEEecCCC---ceeEEEeccccceeEEEeeecCCCCcEEEEEe---CCCcEE
Q 008005 442 EVITSFSLSKDNKYLLVNLI---NQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFEQAFIASGS---EDSQVY 512 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs---~dg~I~ 512 (581)
..|..++|.|.|+.+++-+. ..++.+|.+.+.. .++..+... .....+++|.|++++.+. ..|.+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceE
Confidence 56788999999998877654 3578899887432 233333321 234567799999987754 578999
Q ss_pred EEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEEC------CCcEEEecCCcccc
Q 008005 513 IWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASD------DRTIRIWGLDQINM 564 (581)
Q Consensus 513 iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~iW~~~~~~~ 564 (581)
++|.....+...- ..| ...+.+.|.|.| ++++|++. |.--+||++....+
T Consensus 521 F~D~~~a~~k~~~~~eh-~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEH-FAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EEecchhhhhhccCccc-cccccceECCCC-CEEEEeeehhhhccccceEEEEeecHHH
Confidence 9998743332222 223 346788999999 78888874 55677888865443
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=2.1e-13 Score=131.27 Aligned_cols=140 Identities=18% Similarity=0.271 Sum_probs=115.7
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCeEEEEEccc--------------CCeee-----------EEEEecCCCCCEEEEEe
Q 008005 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKE--------------DGQVS-----------LKHRLSGHRKPVFTVSW 325 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~--------------~~~~~-----------~~~~~~~h~~~V~~l~~ 325 (581)
+..|+|+.|-|.+. .++.+-.+|.++++|... +..+. ++..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999554 566667899999997531 11111 11112223457889999
Q ss_pred CCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEE
Q 008005 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 326 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 405 (581)
+|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|+.|..|.||.+..+.+...-..|...|+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999988887777778899999999999999999999999999999999999999999999
Q ss_pred EEEEee
Q 008005 406 DMAITD 411 (581)
Q Consensus 406 ~i~~~~ 411 (581)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999985
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=4.7e-12 Score=113.86 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=110.1
Q ss_pred EEEEeCCCCCeEEEeeC----------CCcEEEEEcCC-CcEEEEEec-CCCeEEEEEEecCCCeEEEE--eCCCcEEEE
Q 008005 321 FTVSWSPNDHQLLTCGQ----------EEAIRRWDVNS-GECLHVYEK-TGVGLISCGWFLDGGGIFAG--MTDKSICLW 386 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg--~~dg~i~vw 386 (581)
..+.|+|+|++|+.-.. -|...+|.++. +.....+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 36789999988765433 13455555532 233444433 34579999999999997654 457799999
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEee--
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI-- 461 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-- 461 (581)
|++...+..+. ...++.+.|+|+|+++++++. .|.|.+||.++...........++.++|+|+|+++++++.
T Consensus 89 d~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 99865555443 336789999999999999874 4679999999877544445556899999999999999875
Q ss_pred ----CCcEEEEEecC
Q 008005 462 ----NQEIHLWSIES 472 (581)
Q Consensus 462 ----d~~i~iwd~~~ 472 (581)
|+.++||+...
T Consensus 166 r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQG 180 (194)
T ss_pred ceeccccEEEEEecC
Confidence 67889999865
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.4e-12 Score=122.58 Aligned_cols=259 Identities=14% Similarity=0.127 Sum_probs=176.3
Q ss_pred CCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCCcEEEEEecC-CC-eEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 315 GHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKT-GV-GLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
.|....+.|..+|||+|+ ++|.+.-.|++||+.+-.. .|..| .. .|.-...+.|-...+.-..|.+|-+...-+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 467778899999999985 5666788999999976543 34444 33 3333333444455666667777766554332
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
... ..... .-.+++++.-..-|++++....|+-++++.+. ..+....+.++++..++...+|++|+.+|.|.+||
T Consensus 127 hy~-~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYR-TRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-eecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 221 11111 34566776555567777778889999999887 33444558899999999999999999999999999
Q ss_pred ecCCCceeEEEecccc--------ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cCCCCEEEEEEcCC
Q 008005 470 IESDPKLVSRYKGHKR--------ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GHSGSVNCVSWNPA 540 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~ 540 (581)
.++. ..+..+..... ....++...++.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.
T Consensus 204 pR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9986 44444332211 11124445557779999999999999999999988765432 23568999999876
Q ss_pred CC-cEEEEEECCCcEEEecCCccccccc----cCCCceEEecCCC
Q 008005 541 NL-HMLASASDDRTIRIWGLDQINMKHR----DQSNGIVHHCNGR 580 (581)
Q Consensus 541 ~~-~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~~~~~G~ 580 (581)
+. ..++|. +...++|||-.+++.... ...+.+.+.|++.
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 42 345544 457899999999886543 2355555666554
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=4.7e-12 Score=113.89 Aligned_cols=152 Identities=15% Similarity=0.286 Sum_probs=110.7
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEcccCCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEe--eCCCcEE
Q 008005 276 WFLQFSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTC--GQEEAIR 342 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs~----------dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~--~~dg~i~ 342 (581)
..+.|+|+|++|+.-.. -+...||.++..+.. ...+. ...++|.+++|+|+|+.++++ ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 35789999987765332 234666666433321 22222 234579999999999987655 3567999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
+||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.|.+||++..+......+. .++.++|+|+|++++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATA 161 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEE
Confidence 99996 66666654 4567889999999999998754 67999999977766555443 58999999999999998
Q ss_pred Ec------CCeEEEEECCCCe
Q 008005 420 CR------EAAILLLDREANF 434 (581)
Q Consensus 420 ~~------dg~i~i~d~~~~~ 434 (581)
+. |+.++||+.....
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EeccceeccccEEEEEecCeE
Confidence 75 6778888876543
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=2.6e-11 Score=124.75 Aligned_cols=233 Identities=17% Similarity=0.174 Sum_probs=156.5
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEec
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 369 (581)
...|.++|..... ...+..+...+...+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.++.|+|
T Consensus 169 ~~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC
Confidence 3457777775322 23345566778999999999999887654 4799999998865433 33445566789999
Q ss_pred CCCeEEEE-eCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCe-eeEEecCC
Q 008005 370 DGGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEE 442 (581)
Q Consensus 370 ~~~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~ 442 (581)
|++.|+.. +.++ .|++||+.++......... .......|+|||+.|+..+.. + .|+++|+.++. ........
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~ 322 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG 322 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 99987654 4444 5999999877665554432 234567899999998876643 2 68888988766 33334556
Q ss_pred ceEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC---cEEEEeC
Q 008005 443 VITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHR 516 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~ 516 (581)
......|+|++++++.+..++ .|.+||+.++ . ...+...... ....++|++++|+..+.++ .+++.+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDTGLD----ESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCCCCC----CCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 677889999999999988776 7888998774 2 2333222111 1223488998888777654 4555553
Q ss_pred CCCceEEEeccCCCCEEEEEEc
Q 008005 517 YTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 517 ~~~~~~~~~~~h~~~v~~l~~~ 538 (581)
+++....+..+.+.+..++|+
T Consensus 397 -~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -CCceeeECCCCCCCcCCCCCC
Confidence 455556665555566655553
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-11 Score=124.47 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=153.3
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-C--cEEEEEcCCCcEEEEEecCCCeEEEEEEecCC
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (581)
.+.++|....+. ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ...........|+|||
T Consensus 199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 566667653321 2345567788999999999998876543 2 588999988875332 2223334578999999
Q ss_pred CeEEE-EeCCCc--EEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCeeeEE-ecCCce
Q 008005 372 GGIFA-GMTDKS--ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANFERWI-EEEEVI 444 (581)
Q Consensus 372 ~~l~s-g~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~-~~~~~i 444 (581)
+.|+. .+.+|. |+++|+.+++........ ......+|+|||+.++..+. + ..|+++|+.++..... ......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98875 455664 888899887766554432 35677899999998877654 2 3577788877663322 233334
Q ss_pred EEEEECCCCCEEEEEeeC-C--cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-C--cEEEEeCCC
Q 008005 445 TSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-S--QVYIWHRYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-g--~I~iwd~~~ 518 (581)
...+|+|||++++..+.+ + .|.++|+.++ .. ..+...... . ...++|+|+.|+..+.+ | .+++++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~~d---~-~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTRLD---E-SPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 567999999998887653 3 4556677665 22 233222111 1 11348899887765543 3 4778886 5
Q ss_pred CceEEEeccCCCCEEEEEEcC
Q 008005 519 GELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p 539 (581)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777777777788889987
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=1.3e-10 Score=115.13 Aligned_cols=258 Identities=11% Similarity=0.068 Sum_probs=162.5
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCc
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEA 340 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~ 340 (581)
.+.+..+......-..+.|+|||+++.+++.||.|.++|+.+.. ...++.... ...++++++||++++++. ..+.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 44566776554444557899999999999999999999998774 444444433 367899999999988775 5889
Q ss_pred EEEEEcCCCcEEEEEecC-------CCeEEEEEEecCCCeEEEEeCC-CcEEEEeCCCCe-EEeeccCccccEEEEEEee
Q 008005 341 IRRWDVNSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMTD-KSICLWDLDGRE-LESWKGQKTLRISDMAITD 411 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~~~~-~~~~~~~~~~~i~~i~~~~ 411 (581)
+.++|.++.+.++.+... ...+..+..++....++..-.| +.|.+.|..... +............+..|+|
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 999999999998887643 2356778788888866666554 788888875432 2222222223678899999
Q ss_pred CCCEEEEE-EcCCeEEEEECCCCeeeEE---------------ec-----------------------------------
Q 008005 412 DGKRIISI-CREAAILLLDREANFERWI---------------EE----------------------------------- 440 (581)
Q Consensus 412 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~---------------~~----------------------------------- 440 (581)
++++++++ ..++.|.++|.+++..... .|
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99987665 4566777888766541110 00
Q ss_pred ------CCceEEEEECCCCCEEEEE----eeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-
Q 008005 441 ------EEVITSFSLSKDNKYLLVN----LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS- 509 (581)
Q Consensus 441 ------~~~i~~~~~sp~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg- 509 (581)
.+....+..+|+++++.+. ...+.|.++|..+. +.+..+....+. ..+..- ++++|+.+..+..++
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl-~~~~~i~~~~~~-~~~h~e-f~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL-KVVKTITPGPGK-RVVHME-FNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-EEEE-HHHHHT---EEEEE-E-TTSSEEEEEEE--T
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc-ceeEEEeccCCC-cEeccE-ECCCCCEEEEEEecCC
Confidence 1112446779999999998 34579999999987 555555433321 123333 388999776655544
Q ss_pred -cEEEEeCCCCceEEEec
Q 008005 510 -QVYIWHRYTGELVLALA 526 (581)
Q Consensus 510 -~I~iwd~~~~~~~~~~~ 526 (581)
.|.+||..+.+.+..+.
T Consensus 339 ~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 69999999999998887
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.7e-11 Score=122.95 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=154.8
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (581)
.|.++|.+... ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 46677776332 23344567789999999999999876644 368999999887544 33333445578999999
Q ss_pred CeEEE-EeCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCeee-EEecCCce
Q 008005 372 GGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANFER-WIEEEEVI 444 (581)
Q Consensus 372 ~~l~s-g~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~-~~~~~~~i 444 (581)
+.|+. ...+| .|++||+.++......... .......|+|||+.++..+. + ..|+++|+.++... ........
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98874 44444 6888999887766554332 34566789999998877664 2 36888888776632 22223334
Q ss_pred EEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEEEEeCCC
Q 008005 445 TSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~ 518 (581)
....|+|++++++....++ .|.+||+.++ .. ..+...... . ...++|+|+.++..+.+ ..|++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~~~~~---~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTDTSLD---E-SPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCC-CE-EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 5678999999998876533 5788898875 22 333221111 1 12348899988776654 357777874
Q ss_pred CceEEEeccCCCCEEEEEEcCC
Q 008005 519 GELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p~ 540 (581)
+.....+..+.+.+...+|+|-
T Consensus 407 g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEECcCCCCCcCCCccCCC
Confidence 4555566666677888888873
No 246
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=3.6e-10 Score=102.60 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=155.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE-eeCC------CcEEEEEc
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQE------EAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~d------g~i~vwd~ 346 (581)
...+++|+.|..-++.|..+| .+||+.+.- +.......+.+.+.-+..---.++|+- ||.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 344599999999999998777 899998642 221222222222211111112345443 3332 46999997
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC--eEEeeccCc-cccEEEEEEeeCCCEEEEE-EcC
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--ELESWKGQK-TLRISDMAITDDGKRIISI-CRE 422 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~~-~~~i~~i~~~~~~~~l~~~-~~d 422 (581)
...+++.++.. ..+|.++.+.++ .+++. ..+.|++|..... .+..+.... .....+++-+.+...|+.- -.-
T Consensus 83 ~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 66777777754 458889988754 55554 4578999988632 222222211 1123333333333344432 356
Q ss_pred CeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCc-EEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 423 AAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 423 g~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
|.|.+.|+.... .....|...|.+++++.+|..+++++..|+ |+|||..++ ..+..+.-.... ..+.+..++|
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~-A~iy~iaFSp 236 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDR-ADIYCIAFSP 236 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCch-heEEEEEeCC
Confidence 899999987755 456689999999999999999999999987 799999998 666666543332 2355666699
Q ss_pred CCcEEEEEeCCCcEEEEeCCC
Q 008005 498 EQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~ 518 (581)
+..+|+++|+.|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998764
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=5.7e-14 Score=142.20 Aligned_cols=296 Identities=13% Similarity=0.175 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 008005 220 KRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIW 299 (581)
Q Consensus 220 ~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iw 299 (581)
..|..++.|.++.|+..|..+...-..++||..|.|.......+....+.+..+. .-.+++-+. +-.+..|... ||
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~--rel~~~y~g-V~g~~~dr~~-IF 1088 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT--RELQSFYSG-VHGNRRDRQF-IF 1088 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc--hhhcCcccc-cccCcccchh-hH
Confidence 4789999999999999999999999999999999997633222222222211110 001111111 1111222221 11
Q ss_pred EcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008005 300 EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 300 d~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
.+++....+..|....+|++|+-+.++|+.|+..|.|+++++.+|........|...++-+.-+.||...++.+.
T Consensus 1089 -----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1089 -----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred -----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc
Confidence 123445677889999999999999999999999999999999999999999999999999998889988777654
Q ss_pred CC--cEEEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEE
Q 008005 380 DK--SICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYL 456 (581)
Q Consensus 380 dg--~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l 456 (581)
-. ...+|++.. ....... ..-.++ .|+.....-
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf----~ed~~v----------------------------------------kFsn~~q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSF----DEDKAV----------------------------------------KFSNSLQFR 1199 (1516)
T ss_pred ccCchHHHhccccccCccccc----ccccee----------------------------------------ehhhhHHHH
Confidence 33 467888753 1111000 012223 333333333
Q ss_pred EEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEE
Q 008005 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVS 536 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~ 536 (581)
++|+......+||+.++..+..-+.+.....+.-.+..++|+..+|+ +|| .+||++..+.++.|...+..+. -.
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~ 1273 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GG 1273 (1516)
T ss_pred HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-cc
Confidence 44555566778888887444444555444444455666789888876 455 6899998887777765553322 35
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCccccccccC---CCceEEecCCC
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQINMKHRDQ---SNGIVHHCNGR 580 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~---~~~~~~~~~G~ 580 (581)
|+|.| ..++.-+. |||+++.++.+..+ --.+.|..-|.
T Consensus 1274 FHP~g-~eVIINSE-----IwD~RTF~lLh~VP~Ldqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1274 FHPSG-NEVIINSE-----IWDMRTFKLLHSVPSLDQCAVTFNSTGD 1314 (1516)
T ss_pred ccCCC-ceEEeech-----hhhhHHHHHHhcCccccceEEEeccCcc
Confidence 99999 56776665 99999999888655 33455555554
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=2.2e-11 Score=125.29 Aligned_cols=201 Identities=17% Similarity=0.182 Sum_probs=142.1
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE-eeCCC-
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg- 339 (581)
.+.+..+...+.+.+|+|||++|+.++.+ ..|++||+.++.. . .+..+...+.+++|+||++.|+. .+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~---~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E---KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E---EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 44555677789999999999999987644 4799999986532 1 23335556778999999987764 44444
Q ss_pred -cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
.|.+||+.++.... +..+........|+||++.|+..+.. + .|+++|+.++........ ...+....|+|++++
T Consensus 258 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCE
Confidence 58889998876543 33444445567899999988776543 3 688888887665544332 235678899999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEec
Q 008005 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIE 471 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~ 471 (581)
++.++.++ .|.+||+.++...............|+|++++|+..+.++ .+++.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99988776 8999999886644444334455678999999998887754 34444433
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.6e-11 Score=121.01 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=138.9
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE-eeCCC-
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg- 339 (581)
.+.+..+...+...+|||||+.|+..+.+ ..|.+|++.++.. .. +....+.+....|+|||+.|+. ...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~---l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQ---ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EE---ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 34555677889999999999999876643 3688899976532 22 2333344567899999998874 44454
Q ss_pred -cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
.|.+||+.+++... +..+........|+||++.++..+. +| .|+++|+.++......... .......|+|+|+.
T Consensus 267 ~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 58888998877543 4445455667889999998876654 33 6888888776654443222 23445789999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeC-C--cEEEEEecC
Q 008005 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN-Q--EIHLWSIES 472 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~ 472 (581)
++....++ .|.++|+.++...............|+|||+.++..+.+ + .+.++++..
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 98876543 588999988774444433334467899999999887754 2 466666644
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=2.7e-10 Score=109.63 Aligned_cols=278 Identities=14% Similarity=0.262 Sum_probs=189.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCC---------------CeEEEEEcccCCeeeEEEEecCCCCC--EE-EEEeCCCCCeEEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKD---------------QSAIIWEVKEDGQVSLKHRLSGHRKP--VF-TVSWSPNDHQLLT 334 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~d---------------g~i~iwd~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~s 334 (581)
..|..+.|||+++||.|=+.. ..+.+||+.++ .++..+.+-..+ .+ -+.|+-+++++|-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhh
Confidence 468899999999999986543 34999999876 455666655555 55 6889988888765
Q ss_pred eeCCCcEEEEEcCCCcEE-EEEecC-CCeEEEEEEecCCC--eEEE-----EeCCCcEEEEeCCCCeEEeeccCccccEE
Q 008005 335 CGQEEAIRRWDVNSGECL-HVYEKT-GVGLISCGWFLDGG--GIFA-----GMTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~--~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 405 (581)
.. ...+.|+++ ++... ..+..- ...+....|+|.++ .|++ ++..+.+++|.+..+............-.
T Consensus 149 vv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 149 VV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred hc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 53 347999997 43321 111111 35677888888543 3443 45678899999976555554444433455
Q ss_pred EEEEeeCCCEEEEEEc-----------CCeEEEEECCCCeeeEE-ecCCceEEEEECCCCCEEEEEe--eCCcEEEEEec
Q 008005 406 DMAITDDGKRIISICR-----------EAAILLLDREANFERWI-EEEEVITSFSLSKDNKYLLVNL--INQEIHLWSIE 471 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~ 471 (581)
.+.|.+.|+++++-.. ...++++++........ ...++|..++|.|.++.+++.+ .+..+.++|++
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 6788899988765421 35688888886654333 6689999999999998877765 57889999998
Q ss_pred CCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEEEEeCCCCceEE-EeccCCCCEEEEEEcCCCCcEEEE
Q 008005 472 SDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYTGELVL-ALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
.+ +...+...... ..+++|.+++++.++-| |.|-+||......+. .+.+. ...-+.|+|++ .++.+
T Consensus 307 ~N--l~~~~Pe~~rN-----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~ 376 (561)
T COG5354 307 GN--LRFYFPEQKRN-----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDT 376 (561)
T ss_pred cc--eEEecCCcccc-----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEe
Confidence 85 33333222221 23448999999987765 589999976554433 55543 34456799999 56665
Q ss_pred EE------CCCcEEEecCCccccc
Q 008005 548 AS------DDRTIRIWGLDQINMK 565 (581)
Q Consensus 548 ~s------~Dg~I~iW~~~~~~~~ 565 (581)
.. .|..|+||++.....-
T Consensus 377 ~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 377 DTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cCCCcccccCcceEEEEecCchhh
Confidence 53 4788999999876543
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=2.7e-09 Score=103.34 Aligned_cols=265 Identities=9% Similarity=0.045 Sum_probs=163.7
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----------CCcEEEEEcCCCcEEEEEecCCC---
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTGV--- 360 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~--- 360 (581)
++|.+.|..+. +.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999999875 3444444333332 24 8999998887765 67899999999999988875322
Q ss_pred ----eEEEEEEecCCCeEEEEe-C-CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 361 ----GLISCGWFLDGGGIFAGM-T-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 361 ----~v~~~~~~~~~~~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.....+++|||+++++.. . +..|.+.|+.+++......... ...-...+.+. .+ +.|.||......+....
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCC
Confidence 234688999999999776 3 6899999999887765443322 11111111111 11 22344444443322211
Q ss_pred ------eeEEec-CCce-EEEEECC-CCCEEEEEeeCCcEEEEEecCCC----ceeEEEecccc----ceeEEEeeecCC
Q 008005 435 ------ERWIEE-EEVI-TSFSLSK-DNKYLLVNLINQEIHLWSIESDP----KLVSRYKGHKR----ARFVIRSCFGGF 497 (581)
Q Consensus 435 ------~~~~~~-~~~i-~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~ 497 (581)
...+.. ..++ ..-.+.+ +++++++... |.|.+.|+.... .....+..... ..........++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111111 0000 0003455 8888888776 999999965431 22222211100 000111133478
Q ss_pred CCcEEEEEe----------CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE-EEECCCcEEEecCCcccccc
Q 008005 498 EQAFIASGS----------EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA-SASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 498 ~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~-s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+++.++... ..+.|.++|..+++.+..+.. ...+..++++||+..+|+ +...++.|.+.|..+++...
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 888877743 224799999999999998874 457899999999941555 44478999999999998776
Q ss_pred cc
Q 008005 567 RD 568 (581)
Q Consensus 567 ~~ 568 (581)
..
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 65
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.3e-10 Score=119.30 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=135.8
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCC-C--eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE-eeCCCc-
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKD-Q--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEA- 340 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg~- 340 (581)
+.+..+...+.+..|||||+.|+..+.+ + .|++||+.++.. ..+..+. +.....+|+|||+.|+. .+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCCCEEEEEEeCCCCe
Confidence 3445566788899999999988876543 3 588888876532 2222222 33457899999998765 455664
Q ss_pred -EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE
Q 008005 341 -IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 341 -i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
|.+||+.+++.. .+..+........|+||++.++..+. ++ .|+++|+.+++........ ......+|+|||+.+
T Consensus 287 ~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l 364 (448)
T PRK04792 287 EIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEE
Confidence 778888877654 34444455677899999998876654 33 5777788776655443221 123456899999999
Q ss_pred EEEEcC-C--eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEec
Q 008005 417 ISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 417 ~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~ 482 (581)
+..+.+ + .|.++|+.++...............|+|+|+.++..+.++ .+++++... .....+..
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--~~~~~l~~ 434 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--RFKARLPA 434 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcC
Confidence 887653 3 5677888877643333222233558999999988766543 366666643 33444443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=5.2e-11 Score=123.87 Aligned_cols=152 Identities=21% Similarity=0.327 Sum_probs=134.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE-EEe
Q 008005 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VYE 356 (581)
Q Consensus 278 l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~ 356 (581)
+-++++.-++++|+.-+.|.+|+....+ ....+.+|.+.|.++.|+.||.++++++.|.++++|++++.+... ..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccC---CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 3456777799999999999999997442 223689999999999999999999999999999999999988766 666
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
+|...++.++++|+ .+++++.|-+.++|+.+..++..+..+....+..++..++....++++.|+.+++||+.+..
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 89999999999988 99999999999999998888887777777789999999999999999999999999987643
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.9e-09 Score=98.15 Aligned_cols=267 Identities=13% Similarity=0.166 Sum_probs=177.1
Q ss_pred CCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---CcEEEEEcCC--CcEEE--EEecCCCeEEE
Q 008005 293 DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNS--GECLH--VYEKTGVGLIS 364 (581)
Q Consensus 293 dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~--~~~~~--~~~~~~~~v~~ 364 (581)
+.-|++|++.+. +.+... .+-.+.+.++-|+|+|+++.|.++..+ |.|..|.++. |+... .......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~-~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL-QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchh-hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 456999999833 333322 234566778999999999999988654 6787777764 55432 22223444578
Q ss_pred EEEecCCCeEEEEeC-CCcEEEEeCCC-CeEEee--ccCc----------cccEEEEEEeeCCCEEEEEEc-CCeEEEEE
Q 008005 365 CGWFLDGGGIFAGMT-DKSICLWDLDG-RELESW--KGQK----------TLRISDMAITDDGKRIISICR-EAAILLLD 429 (581)
Q Consensus 365 ~~~~~~~~~l~sg~~-dg~i~vwd~~~-~~~~~~--~~~~----------~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d 429 (581)
++.++++++++++.. .|.|.++-++. +.+... ...| ...+....++|+++++++.+- ...|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 899999999998875 57899998853 322111 0111 122788899999999988764 45799999
Q ss_pred CCCCe-----eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEeccc------cceeEEEeeecCC
Q 008005 430 REANF-----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHK------RARFVIRSCFGGF 497 (581)
Q Consensus 430 ~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~------~~~~~i~~~~~~~ 497 (581)
+..+. ...........-+.|+|++++.++.++ +++|.+|........+..+..+. ...........++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 98766 233355667889999999999888776 89999999987433333332111 1111122333489
Q ss_pred CCcEEEEEeC-CCcEEEEeCCC--Cce--EEEeccCCCCEEEEEEcCCCCcEEEEEECC-CcEEEecCCc
Q 008005 498 EQAFIASGSE-DSQVYIWHRYT--GEL--VLALAGHSGSVNCVSWNPANLHMLASASDD-RTIRIWGLDQ 561 (581)
Q Consensus 498 ~~~~l~sgs~-dg~I~iwd~~~--~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-g~I~iW~~~~ 561 (581)
+|++|+++.. ...|.+|.+.. +++ +.....+......+.++|.+ ++|+.+..| ..|.+|..+.
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 9999988765 23788887653 332 22333344557899999999 566666654 5789988764
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=6.8e-11 Score=123.00 Aligned_cols=277 Identities=17% Similarity=0.202 Sum_probs=185.9
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeee---EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS---LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
-+++++.++-. +||..|. .-.|.+||..++.-+. ..+.+..|...=.-- -.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence 34455555544 5666654 3458999987653221 112223341000000 0234555555444443322211
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccc----cEEEEEEeeCCCEEEEEEcCCe
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL----RISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
. . +..-...+....+.-+...++.++.++.+.+||.....+......... ...-+..+++.-++++|+.-+.
T Consensus 81 ~-~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 Q-I---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred h-h---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1 1 112233444455566788899999999999999976554433332211 1122334556668899999999
Q ss_pred EEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE
Q 008005 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|.+|+..... .....|++.|.++.++-||+++++.+.|.++++|++.+........-+|...++. +++ .++ .+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~~-~~n--~i 231 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA--CCF-LPN--RI 231 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE--EEe-ccc--ee
Confidence 9999987433 5578999999999999999999999999999999999985555566778877544 444 444 89
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCC-CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++++|.+.++|+. +++.+..+.+|. ..|..++..++. ..++|++.||.+++|++......
T Consensus 232 ~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccccc
Confidence 99999999999974 466666888885 578999999888 69999999999999999765544
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=8.7e-09 Score=95.90 Aligned_cols=270 Identities=15% Similarity=0.181 Sum_probs=181.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-CCcEEE
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRR 343 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~v 343 (581)
-.+.+.++-++|+|+++.|.++-. +|.|.-|.++.. +.+..+.....-..+-..+++++++++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 356778899999999998888754 477888888753 566555554444445588999999999999876 578999
Q ss_pred EEcCC-CcEEEE--EecCCCe----------EEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEeec---cCccccEEE
Q 008005 344 WDVNS-GECLHV--YEKTGVG----------LISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWK---GQKTLRISD 406 (581)
Q Consensus 344 wd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~ 406 (581)
+-+.. |..... ...|.+. +....+.|+++++++..- --.|.+|++..+.+.... .......+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 98865 433221 1233333 778889999999888764 346999999866553322 233456889
Q ss_pred EEEeeCCCEEEEEEc-CCeEEEEECCCC--eeeE----------EecCCceEEEEECCCCCEEEEEee-CCcEEEEEecC
Q 008005 407 MAITDDGKRIISICR-EAAILLLDREAN--FERW----------IEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIES 472 (581)
Q Consensus 407 i~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~----------~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~ 472 (581)
|.|+|++++..+.+. +++|.+|..... .... +........+.+++||++|+++.. ...|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 999999999888775 789999988774 2111 123456778999999999998765 34788888876
Q ss_pred CCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-cEEEEeC--CCCceEEEec-cCCCCEEEEEEc
Q 008005 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHR--YTGELVLALA-GHSGSVNCVSWN 538 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~--~~~~~~~~~~-~h~~~v~~l~~~ 538 (581)
....+............-+...+.+.+++|+++.+++ .|.+|.+ .+|++..... .......||.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5443333322211111112223378899999888866 7888865 4555543332 233445666654
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=3e-11 Score=110.42 Aligned_cols=245 Identities=16% Similarity=0.223 Sum_probs=170.0
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-----EEEEEecCC------------CeEEEEEEecCCC--eEEEE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTG------------VGLISCGWFLDGG--GIFAG 377 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~sg 377 (581)
.+-|.++.|...|.+|+||..+|.|.++.-+... ....+..|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644322 222333332 3577889988654 57788
Q ss_pred eCCCcEEEEeCCCCeE------------------------------------EeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 378 MTDKSICLWDLDGREL------------------------------------ESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 378 ~~dg~i~vwd~~~~~~------------------------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
+.|.+|++|.+..... ..+...|...|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8999999998842111 11223556678999999999888876 5
Q ss_pred CCeEEEEECCCCeeeE--E--------ecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCc---eeEEEecc----
Q 008005 422 EAAILLLDREANFERW--I--------EEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPK---LVSRYKGH---- 483 (581)
Q Consensus 422 dg~i~i~d~~~~~~~~--~--------~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~---- 483 (581)
|-.|.+|+++-....+ . ....-|++..|+| ..+.++..++.|+|++.|++...- ..+.+...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999887543111 1 1234588999999 467888888899999999984211 11111111
Q ss_pred -----ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC-CCCceEEEeccCCC------------CE---EEEEEcCCCC
Q 008005 484 -----KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR-YTGELVLALAGHSG------------SV---NCVSWNPANL 542 (581)
Q Consensus 484 -----~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~-~~~~~~~~~~~h~~------------~v---~~l~~~p~~~ 542 (581)
...+..|.-.-++.+|+|+++-.. -+|++||+ ...+++.+++-|.. .| ..++|+.++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~- 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND- 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-
Confidence 112233444555889999986543 58999998 45677777776642 33 357899998
Q ss_pred cEEEEEECCCcEEEecCCcccc
Q 008005 543 HMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..++|||....++++++..+..
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ceEecccccceEEEecCCCCcc
Confidence 6999999999999999765543
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=6.3e-10 Score=99.93 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=174.7
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC---CCC-eEEEeeCCCcEEEEEcCCCcEEEEEecC------CCeE
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDH-QLLTCGQEEAIRRWDVNSGECLHVYEKT------GVGL 362 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v 362 (581)
.|.+.+|++..................+..+.|.- ++. .++-+..+|.|.++..........+.+- ....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46788998876533321122222345577788864 444 5666778899999987654443333322 1124
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe--eccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe----e
Q 008005 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELES--WKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANF----E 435 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~----~ 435 (581)
.++.|++.+..++++..+|.+.+-+.....+.. ....|..+.....|+.. .+.+.+|+.|+.+..||++... .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 578899999999999999999966665544443 44455667888888753 4688899999999999999443 2
Q ss_pred eEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 436 RWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
....|...|.++.-+| .+.++++|+.|..|++||.++-.+++..-... +.++.+...... .+.+++++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKHHPEI-FHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceEEEEecchh-hhHHHHHHHhcC-ceEE
Confidence 2345777888888876 68899999999999999999765665543322 444544443211 123344444444 4555
Q ss_pred eCCCC--c---eEEEeccCCCCEEEEEEcCCCCcEEEEEE-CCCcEE-EecCCccc
Q 008005 515 HRYTG--E---LVLALAGHSGSVNCVSWNPANLHMLASAS-DDRTIR-IWGLDQIN 563 (581)
Q Consensus 515 d~~~~--~---~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~-iW~~~~~~ 563 (581)
+...+ + .....+.|.+-+..-.|.... .+|+||+ .|+.++ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccCC
Confidence 54332 3 345566788888888896665 5899876 567655 77655443
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=5e-10 Score=109.97 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=149.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC------C--------------CCCeEEEeeCCCc
Q 008005 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS------P--------------NDHQLLTCGQEEA 340 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s------p--------------~~~~l~s~~~dg~ 340 (581)
.|...++|....||.++||+...+...........-++..++..|. | |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999998764322222222223344454442 2 3346778888999
Q ss_pred EEEEEcCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEE
Q 008005 341 IRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 418 (581)
|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+................+.+++++||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999888776 67889999999999999999999999999999988877776666668999999999999988
Q ss_pred EEcCCeEEEEECCCCe--eeEEecCCceEEEEECCC-----CCEEEEEe-eCCcEEEEEecC
Q 008005 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKD-----NKYLLVNL-INQEIHLWSIES 472 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~-----~~~l~~~~-~d~~i~iwd~~~ 472 (581)
++ +.|.+||+++++ ..+.+|.++|.+++|--+ |.+++++. .+..+.+|-++.
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 589999999998 788899999999999776 67766654 355677887765
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=2.5e-09 Score=117.57 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=187.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEE----EcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIW----EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iw----d~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
...+.|.++.|-++...++.+..+|.|.+. +..+ ..++. ...-...|.+++||||+..|+..+.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~---VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEI---VGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEE---EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 4432 22333 334567899999999999999999998887764
Q ss_pred cC---------------C--------CcEEEEEec------------------------CCCeEEEEEEecCCCeEEEEe
Q 008005 346 VN---------------S--------GECLHVYEK------------------------TGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 346 ~~---------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~sg~ 378 (581)
-. . |+....|.+ .+..-..++|-.||.++++.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 21 0 010001100 223456789999999999877
Q ss_pred C---C---CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCeeeE-----EecCCce
Q 008005 379 T---D---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERW-----IEEEEVI 444 (581)
Q Consensus 379 ~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-----~~~~~~i 444 (581)
. . ..+++|+-+ +.+......-.+--.+++|.|.|+.+++... ...|.+|..+...... ......|
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence 4 2 479999976 5565555544445678999999999998865 4568888866655211 1345679
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE-EEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEe----CCC
Q 008005 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWH----RYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd----~~~ 518 (581)
..+.|++|+..|++...+. |.+|-..+..-..+ .+....... +....|+| +...|...+.+|.+..++ +..
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~--~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES--VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC--CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 9999999999999977554 99999877521111 122111110 11122344 344566666656665443 211
Q ss_pred C--------ceEEEec-----------------------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 519 G--------ELVLALA-----------------------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 519 ~--------~~~~~~~-----------------------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+ ..+..+. .-..+|++++|++++ ..+++...||.|.+|.....
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecCC
Confidence 1 0111111 124689999999998 56899999999999986544
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=2.9e-11 Score=131.52 Aligned_cols=243 Identities=14% Similarity=0.198 Sum_probs=178.0
Q ss_pred EEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC-CCeEEEE
Q 008005 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISC 365 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~ 365 (581)
+.....++...-|..+..+ ...+.+-..|.++.-+|...+.+||+.||.|++|....++.+..+... ...|+.+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~-----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS-----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred CCcccCCccccceecccce-----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 3333444555555544221 123345566888888999999999999999999999999888777633 4788999
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE---cCCeEEEEECCCCe---eeEEe
Q 008005 366 GWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANF---ERWIE 439 (581)
Q Consensus 366 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~ 439 (581)
.|+.+|+.+..+..||.+.+|.+.......+..+ .....++.|-. ..+++++ .++.+.+||..-.. .....
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qch-nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCH-NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred hhcccCCceeeeccCCceeecccCCcceeccccC-Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence 9999999999999999999999986555555544 34677777765 4556554 46789999976544 44478
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
|.+.++++++-|..+.|++|+.+|.|++||++.. ++...+.. .. ...++++|+..|.|+||++...
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh------------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999999999999999999999999876 55555543 12 4568999999999999999887
Q ss_pred ceEEEecc---CCCC--E--EEEEEcCCCCcEEEEEECCCc
Q 008005 520 ELVLALAG---HSGS--V--NCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 520 ~~~~~~~~---h~~~--v--~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
..+..+.. |.+- . ..+...+. ..|.+|+.||+
T Consensus 2401 ~ll~~~p~e~ak~gfFr~~g~Q~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2401 GLLHTFPSEHAKQGFFRNIGMQINVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred chhhcCchhhcccchhhhcCceeeeccC--ceEEEecCCCC
Confidence 77766653 2111 1 22223333 36778888874
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2.3e-09 Score=109.26 Aligned_cols=236 Identities=9% Similarity=0.047 Sum_probs=145.2
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE---EEeeCCC--cEEEEEcCCCcEEEEEecCCCeEEEEEEec
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL---LTCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 369 (581)
.|.+.|.+..+. ..+......+..-.|+|||+.+ ++...+| .|.+.++.+++.... ....+......|+|
T Consensus 166 ~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC
Confidence 566666653321 2344455567788999999752 2444443 577788887765433 33344456789999
Q ss_pred CCCeEEEEeC-CC----cEEEEeCCC---CeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCe--EEEEECCC--Ce-e
Q 008005 370 DGGGIFAGMT-DK----SICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISIC-REAA--ILLLDREA--NF-E 435 (581)
Q Consensus 370 ~~~~l~sg~~-dg----~i~vwd~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~--~~-~ 435 (581)
||+.|+..+. +| .+..|++.. +................+|+|||+.|+..+ .+|. |+++++.. +. .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9999887653 22 344467654 233333322222346789999999888766 4554 55555542 22 2
Q ss_pred eEEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC---CC
Q 008005 436 RWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE---DS 509 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~---dg 509 (581)
........+....|+|||+.|+..+.+ ..|.+||+.++ +. ..+...... .....|+|+|+.|+..+. ..
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~---~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPEN---KESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCC---ccceEECCCCCEEEEEECCCCCc
Confidence 333344567789999999999877653 36899999876 33 233322212 223445899988775433 34
Q ss_pred cEEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
.|++||+..++..... ...+.+...+|+|..
T Consensus 396 ~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 7899999877654443 345667788898854
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=1.1e-09 Score=105.58 Aligned_cols=298 Identities=18% Similarity=0.186 Sum_probs=194.5
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---------
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------- 338 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--------- 338 (581)
+..-.-++..++|||.|.+|++....| |.+|....... + ..+. | ..|..+.|+|+++||.+=+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~--l-~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK--L-VRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhh--e-eeee-c-CCceecccCcccceeeeeccCCccChhhcc
Confidence 333566888999999999999887666 89998775532 2 2222 3 459999999999999986543
Q ss_pred ------CcEEEEEcCCCcEEEEEecCCCe--EE-EEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEE
Q 008005 339 ------EAIRRWDVNSGECLHVYEKTGVG--LI-SCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMA 408 (581)
Q Consensus 339 ------g~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~ 408 (581)
..+.+||+.+|..+..+.....+ .+ -+.|+-+..+++-. ....++++++.. -....+.......+....
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEE
Confidence 35999999999999988876554 44 57788887776654 445799999722 122222223334688899
Q ss_pred EeeCCC--EEEE-----EEcCCeEEEEECCCCeeeE--EecCCceEEEEECCCCCEEEEEee-----------CCcEEEE
Q 008005 409 ITDDGK--RIIS-----ICREAAILLLDREANFERW--IEEEEVITSFSLSKDNKYLLVNLI-----------NQEIHLW 468 (581)
Q Consensus 409 ~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~-----------d~~i~iw 468 (581)
|+|.++ .|+. ....+.+++|.+..+.... .-..-.-..+.|.+.|+++++-.. ...++++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 998753 3333 2456788888887554111 112223356788999998776432 3468888
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCCCcEEE--EEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA--SGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
++......+. ....+.+.. ..|.|.++.++ +|-.+-.+.++|++.. +...+ ..+.=+.+.|+|.+ ++++
T Consensus 261 ~~~e~~i~V~--~~~~~pVhd---f~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~-r~il 331 (561)
T COG5354 261 RITERSIPVE--KDLKDPVHD---FTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHE-RYIL 331 (561)
T ss_pred eeccccccee--cccccccee---eeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcc-cEEE
Confidence 8875422222 233444333 33366666544 4457889999998755 44333 35556778899999 6888
Q ss_pred EEECC---CcEEEecCCcccccc-cc---CCCceEEecCCCC
Q 008005 547 SASDD---RTIRIWGLDQINMKH-RD---QSNGIVHHCNGRI 581 (581)
Q Consensus 547 s~s~D---g~I~iW~~~~~~~~~-~~---~~~~~~~~~~G~~ 581 (581)
.++-| |.|-+|+........ .. ...-.-|+|||.+
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF 373 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQF 373 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceE
Confidence 87765 689999987654433 22 2333446777753
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=7.9e-09 Score=98.74 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=138.9
Q ss_pred EcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC-cEEEEEcCCCcEEEEEec
Q 008005 280 FSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-AIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 280 ~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 357 (581)
|++ +|.+++..|. |.+.|.+...+-. .--+|.+.|....+..+++-++.|..|| .+-|+|..+++. +.+..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~ 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEK 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeC
Confidence 444 6788888874 5677776654321 2246788899999998888999999999 899999988774 44556
Q ss_pred CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC----eEEEEECCCC
Q 008005 358 TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA----AILLLDREAN 433 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~ 433 (581)
.-+.|.++..+++|+.++++.....+.+.|++++..........+-|+.+.|+|++++++-+-.+| .|+++|..++
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 667899999999999999999999999999999998888877778899999999999999887665 6999999997
Q ss_pred e-eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 434 F-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 434 ~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+ .........=.+-+|.||+++|..-+.
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eEEEecCCcccccCcccCCCCcEEEEEec
Confidence 7 334444444556788999998876543
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=111.02 Aligned_cols=202 Identities=16% Similarity=0.063 Sum_probs=128.0
Q ss_pred ecccccCcEEEEEEcCCCCE--E-EEEeCCC--eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-CC-
Q 008005 267 ILEAHSDEVWFLQFSHDGKY--L-ASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EE- 339 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~--l-asgs~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg- 339 (581)
.+......+.+-+|||||+. + ++...+| .|.+.++..+.. ..+.. ..+.....+|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccceEECCCCCEEEEEECCCCC
Confidence 34445566778899999974 2 2444444 466667765432 22222 3344557899999998887653 22
Q ss_pred ---cEEEEEcCCC---cEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCc--EEEEeCCC--CeEEeeccCccccEEEEE
Q 008005 340 ---AIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKS--ICLWDLDG--RELESWKGQKTLRISDMA 408 (581)
Q Consensus 340 ---~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~--i~vwd~~~--~~~~~~~~~~~~~i~~i~ 408 (581)
.+..|++.++ +...............+|+|||+.|+..+ .+|. |+++++.. +....... ....+....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~ 333 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPA 333 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCcccee
Confidence 3445777653 33333323223446789999999887765 4564 44445532 32332222 223567889
Q ss_pred EeeCCCEEEEEEcC---CeEEEEECCCCeeeEEe-cCCceEEEEECCCCCEEEEEee---CCcEEEEEecCC
Q 008005 409 ITDDGKRIISICRE---AAILLLDREANFERWIE-EEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD 473 (581)
Q Consensus 409 ~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~ 473 (581)
|+|||+.|+..+.+ ..|.+||+.++....+. ....+....|+|||+.|+.... ...|+++|+.++
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99999999877653 47999999888744333 3346778999999998886544 346888888765
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=2.2e-10 Score=104.94 Aligned_cols=251 Identities=15% Similarity=0.255 Sum_probs=182.7
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc-CCCcEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV-NSGECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~v 385 (581)
.+...+.||.+.|+....-|...-+++.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 456678899999999999998888999999999999954 3344333222 23668899999999999999999999999
Q ss_pred EeCC----CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe
Q 008005 386 WDLD----GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 386 wd~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
+.+. ..........|..++..+-|+-...++++.+.|..+.---.+.+. ..-.......+.+.+.-. +..+|.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecc
Confidence 8774 233344445666789999999888999999988776544444433 100000111111111111 555666
Q ss_pred eCCcEEEEEecC-CCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCCCCEEEEEEc
Q 008005 461 INQEIHLWSIES-DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 461 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~~ 538 (581)
..|.|....+.. ...++.++.+|... +.+..|.+....+++|..|..+.+||+--.+ ....+.+|...|..+...
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~---~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGE---VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccc---eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 677777666543 23677788888877 5566668899999999999999999986543 346788999999999988
Q ss_pred CCCCcEEEEEECCCcEEEecCCcccc
Q 008005 539 PANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 539 p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+.- ..+++++.||.|.+|+++....
T Consensus 250 ~~t-~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 250 QHT-RQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhh-eeeeeccCCCeEEEEeccceee
Confidence 877 6999999999999999986543
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=3.1e-09 Score=107.25 Aligned_cols=303 Identities=16% Similarity=0.145 Sum_probs=205.2
Q ss_pred ccccccceeecccccCcEEEEEEcCC------------CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEe
Q 008005 258 NRIPSQTLQILEAHSDEVWFLQFSHD------------GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~------------g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 325 (581)
+....+.++.++.|...|+.+.|.|- .-+||++...|.|.+||.... .....+..|.+++..++|
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheee
Confidence 44567789999999999999999873 126788888899999999865 445667889999999999
Q ss_pred CC---CC-CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-------CeE
Q 008005 326 SP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-------REL 393 (581)
Q Consensus 326 sp---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-------~~~ 393 (581)
-+ +. ..|++-....++.+|+..+|+....+........|+.+.| |.+++..-+..|.+.+.+.-+ ++.
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 87 33 4566667778999999999999998887777888888888 667777777778777776521 222
Q ss_pred EeeccCccc------------c-------------EEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEE
Q 008005 394 ESWKGQKTL------------R-------------ISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITS 446 (581)
Q Consensus 394 ~~~~~~~~~------------~-------------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~ 446 (581)
..+...+.. . ...++|+|.-+.++.......+.++|++-.. ....-..+.+.-
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akf 277 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKF 277 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcce
Confidence 222221110 0 1135667777777777778889999998776 222233444555
Q ss_pred EEECCCC--CEEEEEeeCCcEEEEEecCCCcee------------------EEEe-------------------------
Q 008005 447 FSLSKDN--KYLLVNLINQEIHLWSIESDPKLV------------------SRYK------------------------- 481 (581)
Q Consensus 447 ~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~------------------~~~~------------------------- 481 (581)
+.+-|++ ..|++...||.+.+|-.+...... ....
T Consensus 278 v~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 278 VDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 5665654 568888889998888654311000 0000
Q ss_pred -----------------------------------------------ccccceeEEE--------eeecCCCC-------
Q 008005 482 -----------------------------------------------GHKRARFVIR--------SCFGGFEQ------- 499 (581)
Q Consensus 482 -----------------------------------------------~~~~~~~~i~--------~~~~~~~~------- 499 (581)
+|........ .....|.+
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~ 437 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTV 437 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceee
Confidence 0000000000 00001111
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC----------CcEEEecCCccccc
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD----------RTIRIWGLDQINMK 565 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D----------g~I~iW~~~~~~~~ 565 (581)
.++|.|.+.|+|.++|+.++.....+..|.+.|.++.|-... .+++.+.. +.+.+=|+++|-.+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s--slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS--SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce--eEEEeeeccccccccceeeeEEEEEccccccc
Confidence 357899999999999999999999999999999999998765 45555432 34667777776544
No 268
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=1e-08 Score=103.83 Aligned_cols=258 Identities=14% Similarity=0.182 Sum_probs=160.7
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
++..++.++.++.+..+|..++... ..... .+.+.+.-.. .+..++.++.+|.+..||..+|+.+..+.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe---eeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 4667888888999999999776432 22221 1222211111 34567777889999999999999887765443221
Q ss_pred E-----EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc----c---cEEEEEEe--eCCCEEEEEEcCCeEEEE
Q 008005 363 I-----SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT----L---RISDMAIT--DDGKRIISICREAAILLL 428 (581)
Q Consensus 363 ~-----~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----~---~i~~i~~~--~~~~~l~~~~~dg~i~i~ 428 (581)
. +... .+..++.+..++.+..+|..+++..-...... . ....+.-+ -.+..+++++.+|.++.+
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 1 1111 23477888889999999997765432111100 0 00001001 135578888899999999
Q ss_pred ECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
|..++...+........... .++..+++++.+|.++.+|..++ +.+............. . ...+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ss-p---~i~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTA-P---AVVGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCcccc-C---EEECCEEEEEeCC
Confidence 99988754443322222222 25678888889999999999887 4443332111111000 0 1135688999999
Q ss_pred CcEEEEeCCCCceEEEeccCCCCEEE-EEEcCCCCcEEEEEECCCcEEEe
Q 008005 509 SQVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
|.|+++|..+|+.+..+..+...+.. ..+. ++ .|+.++.||.|..|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 99999999999999988876654333 3333 33 47788999999876
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=7.1e-11 Score=114.27 Aligned_cols=281 Identities=15% Similarity=0.275 Sum_probs=186.0
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC----eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+..+.||+..|..++--.+.+-+++++.|.+|++|.+...+ .-.+..++..|..+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999887888889999999999999987432 224677889999999999999988888765 788
Q ss_pred EEEEEcCCCcEEEEEecC--CCeEEEEEEec--CCCeEEEE-eCCCcEEEEeCCCCeEEeec-----cCccccEEEEEEe
Q 008005 341 IRRWDVNSGECLHVYEKT--GVGLISCGWFL--DGGGIFAG-MTDKSICLWDLDGRELESWK-----GQKTLRISDMAIT 410 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~sg-~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~i~~~ 410 (581)
|.+||.--|+.+..+... .+.+..+...+ +...+++| +...+|+++|.+........ .....-+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998877765533211 12222222223 44455555 67889999999865433221 2333568999999
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE-EEecCCCceeEEEeccccce
Q 008005 411 DDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL-WSIESDPKLVSRYKGHKRAR 487 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~ 487 (581)
+.|++++++-.+|.|.+.|.+++. ..+....-....++ .|..+.++....|.++.+ |..-++ ......+....+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppep- 962 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPEP- 962 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCcc-
Confidence 999999999999999999999987 22222222222222 244556666666777777 765554 222222222222
Q ss_pred eEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc-----eEEEecc--CCCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008005 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-----LVLALAG--HSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
..|...-|.-+++......+.+|-- .++ .+..++. ..+..++++--|-+ .-+..|...|.|.+
T Consensus 963 ----ahflqsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 963 ----AHFLQSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred ----hhhhhccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence 1122223455777777777888852 221 1222222 35678888888877 56777888888875
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.9e-08 Score=101.80 Aligned_cols=267 Identities=9% Similarity=0.048 Sum_probs=166.5
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
.+..+++++.+|.+.-+|..++.. ................ ++..++.++.+|.+..+|..+|+.+..........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~---~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR---LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE---eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee
Confidence 356788888899999999877643 2222222211112222 46678888899999999999999887765433211
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccE-----EEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE
Q 008005 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDREANFERW 437 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 437 (581)
..... .+..++.++.+|.|+.||.++++..-......... ....+. +..++.+..++.+..+|.+++...+
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 11111 35578888889999999998766533222211111 111111 2467788888999999998887433
Q ss_pred EecCC------c---eEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEe
Q 008005 438 IEEEE------V---ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 438 ~~~~~------~---i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
..... . ...+.-+| .+..+++++.++.++.||..++ +.+....... . ... ...+..++.++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~~-~-----~~p-~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASS-Y-----QGP-AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccCC-c-----cCc-eEeCCEEEEEC
Confidence 21100 0 00111111 3567888888999999999887 4443333111 0 001 12456788888
Q ss_pred CCCcEEEEeCCCCceEEEeccCC-CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 507 EDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
.||.|+.+|..+|+.+....... ....+... .+ ..+++++.||.|.+||..+++...+..
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 99999999999998876553221 12222222 24 478889999999999999998876544
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=9.1e-11 Score=127.78 Aligned_cols=199 Identities=15% Similarity=0.224 Sum_probs=156.9
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.++.|-..|.++.=+|...+-+||+.||.|++|.+..+.++.+.++. +. ..|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCCceeeeccCCceeeccc
Confidence 34456678889988999999999999999999999877766554443 33 88999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEe---CCCcEEEEeCCC---CeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGM---TDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~vwd~~~---~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
. .+.....+.|.....+..|-. ..+++++ .++.+.+||.-- ..+.. ..|...++++++.|..+.+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence 7 666777788888888888874 5666654 467999999732 22222 66777899999999999999999
Q ss_pred cCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe
Q 008005 421 REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 421 ~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
.+|.|++||++..+.+..-.. ++ ...++++++..|.|+||++... ..+..+.
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEcccc-chhhcCc
Confidence 999999999998762111000 44 5678999999999999999876 5555443
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=9.1e-10 Score=108.19 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=152.2
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC---CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcccc
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR 403 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 403 (581)
|...++|....||.+++|+..+++....|... .+..++..|. |.+... ...+.... .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s-------------~~k~~~~~--~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS-------------PMKWLSLE--K 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc-------------hHHHHhHH--H
Confidence 45678999999999999999999877766432 2333344443 111100 00000000 0
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE----EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANFERW----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
. ..-+.+...++-|...|.|.+|+...+.... -.|.+.|.++.++.+-..|.+++.|+.+..|+.... ..+..
T Consensus 63 ~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~ 139 (541)
T KOG4547|consen 63 A--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRI 139 (541)
T ss_pred H--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeee
Confidence 0 0113345577888889999999999888322 257888999999999999999999999999999887 77777
Q ss_pred EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCC-----CCcEEEEEECCCcE
Q 008005 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-----NLHMLASASDDRTI 554 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~~l~s~s~Dg~I 554 (581)
+.........+ | .+|++..+++++ ++|++||+++++.+..|.+|.++|++++|..+ |.++|.++..+.-+
T Consensus 140 ~~~~~~~~~sl--~-is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 140 WKEQKPLVSSL--C-ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eccCCCccceE--E-EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 77766654333 2 388999998886 57999999999999999999999999999877 54677777788889
Q ss_pred EEecCCc
Q 008005 555 RIWGLDQ 561 (581)
Q Consensus 555 ~iW~~~~ 561 (581)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 9998875
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=2.2e-08 Score=112.44 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=159.6
Q ss_pred EEEEeCCC-CCeEEEeeCCCcEEEEEcCCCcEEEEEecC--------------CCeEEEEEEecCCCeEEEEeC-CCcEE
Q 008005 321 FTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKT--------------GVGLISCGWFLDGGGIFAGMT-DKSIC 384 (581)
Q Consensus 321 ~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~sg~~-dg~i~ 384 (581)
..++++++ +.++++-..++.|++||.. +..+..+... -.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788764 5566666778889999975 5544444321 113578899988887766654 56899
Q ss_pred EEeCCCCeEEeeccCc----------------cccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCeeeEEec-------
Q 008005 385 LWDLDGRELESWKGQK----------------TLRISDMAITD-DGKRIISICREAAILLLDREANFERWIEE------- 440 (581)
Q Consensus 385 vwd~~~~~~~~~~~~~----------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 440 (581)
++|+.++.+..+.... ......++++| ++..+++.+.++.|++||..++.......
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9999877665442210 12356899999 55566666778999999988765322211
Q ss_pred ---------CCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEE------------Eeccccc-----eeEEEee
Q 008005 441 ---------EEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSR------------YKGHKRA-----RFVIRSC 493 (581)
Q Consensus 441 ---------~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~------------~~~~~~~-----~~~i~~~ 493 (581)
-.....++++|+++.|+++ +.++.|++||+.++...... +....+. ...-..+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 1235679999999855554 55789999999875321110 0000000 0001122
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-------------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-------------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.++++|.++++-+.++.|++||..++....... +.-....+++++++| +++++-+.++.|++||++
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECC
Confidence 336788888888999999999988776553221 112357789999999 789999999999999998
Q ss_pred cccc
Q 008005 561 QINM 564 (581)
Q Consensus 561 ~~~~ 564 (581)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8765
No 274
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.19 E-value=1.4e-10 Score=102.03 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCC---H---HHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHH
Q 008005 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHS---S---VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASF 134 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~---~---~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 134 (581)
++++|+++||+.||-..||.++|..|.+|+|+..+. + .-.+++.+|..|+-++|+..+..+...--...+.+.|
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F 103 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFF 103 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHH
Confidence 688999999999999999999999999999998732 2 4456889999999999999999885221112334889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcccccccC-hhhHHHhhhcc
Q 008005 135 LILEQKFLELLRRDKVSAALNSLRSEIVPLQIN-MSRVHELASCI 178 (581)
Q Consensus 135 ~~~~q~~lell~~~~~~~a~~~l~~~l~pl~~~-~~~~~~l~~~l 178 (581)
.+++|+++|++..+...+|+.++|.++.|.... .+...+|...+
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999998763 35666665543
No 275
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.17 E-value=1.6e-07 Score=88.83 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=146.9
Q ss_pred EEEeCC-CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC-
Q 008005 322 TVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ- 399 (581)
Q Consensus 322 ~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~- 399 (581)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+.+...+..++.+...+ +.++|..+++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567887 66667776678999999998876543 33332 66777773345666666644 45559988766544432
Q ss_pred ----ccccEEEEEEeeCCCEEEEEEcC--------CeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEE-EeeCCcEE
Q 008005 400 ----KTLRISDMAITDDGKRIISICRE--------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLV-NLINQEIH 466 (581)
Q Consensus 400 ----~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~ 466 (581)
.....+++++.++|+..++.... |.|..++...........-...+.++|+|+++.|++ -+..+.|.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeE
Confidence 44578999999999966665543 668888888333455555667889999999998765 45678899
Q ss_pred EEEecCCCc-e--eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc-CCCC
Q 008005 467 LWSIESDPK-L--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN-PANL 542 (581)
Q Consensus 467 iwd~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~-p~~~ 542 (581)
.|++..... . ...+...........-+....+|++.++....+.|.+++.. |+.+..+......+++++|. ++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 999975423 1 12221111111112222336788888888889999999976 99888887766689999994 5654
Q ss_pred cEEEEE
Q 008005 543 HMLASA 548 (581)
Q Consensus 543 ~~l~s~ 548 (581)
.+++|.
T Consensus 239 ~L~vTt 244 (246)
T PF08450_consen 239 TLYVTT 244 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555554
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=5e-09 Score=94.23 Aligned_cols=202 Identities=10% Similarity=0.086 Sum_probs=139.8
Q ss_pred cCcEEEEEEcC---CCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC---CEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 272 SDEVWFLQFSH---DGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~---~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
+..+..+.|.. +|. .++-+..+|.|.++.............+..-.- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566666653 455 566677889999998764322211122221111 24578899999999999999999966
Q ss_pred EcCCCcEE--EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-Ce-EEeeccCccccEEEEEEee-CCCEEEE
Q 008005 345 DVNSGECL--HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RE-LESWKGQKTLRISDMAITD-DGKRIIS 418 (581)
Q Consensus 345 d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~-~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~ 418 (581)
+....... +..+.|..+++.+.|+. +.+.+++|+.|+.+..||++. ++ +..-...|...|.+|.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 65555443 37889999999999986 456789999999999999983 22 2222345566788888775 5779999
Q ss_pred EEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCC
Q 008005 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~ 473 (581)
|+.|-.|++||.++.. .......+.|..+.++|.- ..+++++.-+-.++.+...+
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999999999999755 2333455889999999943 33444555556677777654
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=6e-10 Score=111.17 Aligned_cols=233 Identities=14% Similarity=0.177 Sum_probs=166.9
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---------------EEEEEecCCCeEEEEEEecCCCeEEEEeCC
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---------------CLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 380 (581)
......|+.|+....++++||.||.++|..+.+.. .-+++.+|...|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34557899999999999999999999999886532 224567899999999999999999999999
Q ss_pred CcEEEEeCCCCeEEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe-cCCceEEEEECCCCCEEE
Q 008005 381 KSICLWDLDGRELES--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-EEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 381 g~i~vwd~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~sp~~~~l~ 457 (581)
|.|.+|-+-.+.... .......-|.+++|+.||..++.+..||.|.+=.++.....-.. .......+.|++|.+.++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999986544322 12233447899999999999999999999998877766522111 122345789999999999
Q ss_pred EEeeCCcEEEEEecCCCce-------eEE---EeccccceeEEEe-----eecCCCCcEEEEEeCCCcEEEEeCCCC-ce
Q 008005 458 VNLINQEIHLWSIESDPKL-------VSR---YKGHKRARFVIRS-----CFGGFEQAFIASGSEDSQVYIWHRYTG-EL 521 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~-------~~~---~~~~~~~~~~i~~-----~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~ 521 (581)
.+-.+|.+++||...+... +.. +.........+.+ ....|+...++.+-.+|.+.|-.-.+. ++
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999998764211 110 1100111111111 122567788999999998888764433 33
Q ss_pred EEEeccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 522 VLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 522 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+..-. .-.|.++.|+++| .+|+.+|.|
T Consensus 253 vv~dt--gm~~vgakWnh~G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVDT--GMKIVGAKWNHNG-AVLAVCGND 279 (1189)
T ss_pred eEEec--ccEeecceecCCC-cEEEEccCc
Confidence 32222 2568899999999 699998865
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=5.5e-08 Score=109.23 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=155.3
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEEcccCCeeeEEEEecC--------------CCCCEEEEEeCCCCCeEEEeeC-CCc
Q 008005 277 FLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--------------HRKPVFTVSWSPNDHQLLTCGQ-EEA 340 (581)
Q Consensus 277 ~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~V~~l~~sp~~~~l~s~~~-dg~ 340 (581)
.++++++ +.++++-+.++.|.+||.... .. ..+.+ +-.....+++.++++.|+++.. .+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i---~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-FI---VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC-EE---EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 5788774 567777777888999998632 11 11111 1123578999998887666554 567
Q ss_pred EEEEEcCCCcEEEEEecC-----------------CCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccC---
Q 008005 341 IRRWDVNSGECLHVYEKT-----------------GVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQ--- 399 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--- 399 (581)
|+++|..++. +.++.+. -.....++++|+ +..+++.+.++.|++||..++....+...
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987765 3333211 112457899994 55556666788999999977655433211
Q ss_pred -----------ccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCCCeeeEEec-----------------------CCce
Q 008005 400 -----------KTLRISDMAITDDGKRIISI-CREAAILLLDREANFERWIEE-----------------------EEVI 444 (581)
Q Consensus 400 -----------~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----------------------~~~i 444 (581)
.......++++|+++.++++ +.++.|++||+.++....... -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 11245679999999855544 567899999998755222110 1124
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc-----------ceeEEEeeecCCCCcEEEEEeCCCcEEE
Q 008005 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-----------ARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
..++++++|+.+++.+.++.|++||..++ ... .+.+... .......+..+++|+++++-+.++.|++
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg-~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATK-RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCC-eEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 68899999998888888999999999875 322 2222110 0001122333778999999999999999
Q ss_pred EeCCCCce
Q 008005 514 WHRYTGEL 521 (581)
Q Consensus 514 wd~~~~~~ 521 (581)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988765
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4.5e-09 Score=106.11 Aligned_cols=285 Identities=12% Similarity=0.105 Sum_probs=196.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCC------------CeEEEeeCCCcEE
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------------HQLLTCGQEEAIR 342 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------------~~l~s~~~dg~i~ 342 (581)
-.++.|+|.| ++|.|+. ..|.+-|..+- +.+..+.-|...|+.+.|.|-. -.||++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 5678899987 6777764 46888887543 6667888899999999998721 2577888889999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFL---DG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRII 417 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~ 417 (581)
+||...+..+..+..+..++..++|-+ +. ..|++-....+|.+|+..+++..-..........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999999999999999999999987 33 4566777778999999988776554444444677788888 566777
Q ss_pred EEEcCCeEEEEECCCCe--------eeE-EecCC------------c-------------eEEEEECCCCCEEEEEeeCC
Q 008005 418 SICREAAILLLDREANF--------ERW-IEEEE------------V-------------ITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--------~~~-~~~~~------------~-------------i~~~~~sp~~~~l~~~~~d~ 463 (581)
..+..|.+.+.+.-... ... ..|.. . ...++|+|.-+.++......
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 77777877776643211 111 11111 0 12357788766666667789
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc----------------eEEEecc
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE----------------LVLALAG 527 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~----------------~~~~~~~ 527 (581)
.+.++|++-. ..+.......+....+.+.. .+....++++-.||.+.+|-.+... ....+..
T Consensus 253 ellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 253 ELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 9999999876 56666555555444455554 5667789999999999999765421 1111111
Q ss_pred -CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc
Q 008005 528 -HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 528 -h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
.+-.+......|..+..++.--.+|.+.+|.+.++++..
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 112233344456544555555678899999999766543
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=1.5e-07 Score=91.29 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=145.2
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEEcccCCeeeEEEEecCC-------CCCEEEEEeCCCCCeEEEee-C-CCc
Q 008005 280 FSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWSPNDHQLLTCG-Q-EEA 340 (581)
Q Consensus 280 ~s~~g~~lasgs~----------dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~s~~-~-dg~ 340 (581)
+||||+.|+.+.. +..|.+||..+... ...+.-- ...-..++++|||++|++.. . +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 9999998877655 78899999987643 3333321 12234788999999998776 3 689
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEE-ee-ccCcc--ccE-EEEEEee-CC
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELE-SW-KGQKT--LRI-SDMAITD-DG 413 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~-~~-~~~~~--~~i-~~i~~~~-~~ 413 (581)
|.+.|+.+++.+..+.... ...-...+.+. +.+-+.||......+.. ++.. .. ...+. .++ ..-.+.+ +|
T Consensus 130 V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG 206 (352)
T ss_pred EEEEECCCCcEEEEEeCCC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence 9999999999998887643 11112222221 22333455444433321 1111 00 00000 000 0003455 77
Q ss_pred CEEEEEEcCCeEEEEECCCCe------eeEEe--------cCCceEEEEECCCCCEEEEEee----------CCcEEEEE
Q 008005 414 KRIISICREAAILLLDREANF------ERWIE--------EEEVITSFSLSKDNKYLLVNLI----------NQEIHLWS 469 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~------~~~~~--------~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd 469 (581)
+++.+... |.|++.|+.... ..... ..+.+.-++++|+++.+++... .+.|.++|
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 77776666 999999965543 11111 1233445999999999988532 25799999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEEe-CCCcEEEEeCCCCceEEEec
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~~~ 526 (581)
..+. +.+..+..... .....++++++ +|++.. .++.|.++|..+++.+..+.
T Consensus 286 ~~t~-kvi~~i~vG~~----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 286 AKTG-KRLRKIELGHE----IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCC-eEEEEEeCCCc----eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9988 66665553222 22233389999 777666 57889999999999998873
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=6.6e-10 Score=111.29 Aligned_cols=284 Identities=14% Similarity=0.217 Sum_probs=183.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC--CCEEEEEeCCCC--CeEEEeeCCCcEEEEEcC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR--KPVFTVSWSPND--HQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~ 347 (581)
.+.+..+..+|.|+-+|.++.-| +.+-|+..... ...-+ .|. -.|-.+.|+|.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 45677899999999999998877 56667764322 11111 122 236778888743 344444445566789875
Q ss_pred C---CcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 348 S---GECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 348 ~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
. ......+.+|...++.+.|.|.. ..+++++.|-.+..||+++.. +..+..-+. ....++|+-....+.+.+.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccCcchhhhcc
Confidence 3 33445667889999999999854 467889999999999997633 333333333 5677889877667777788
Q ss_pred CCeEEEEECCCCe---eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 422 EAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 422 dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
...|++||.+.+. .....+...+.+++|.. ....+.+.+.|++|++||.....+.-........+++ ..++.+.
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw--~~r~~Pf 256 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW--RGRYLPF 256 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce--ecccccc
Confidence 8899999999877 33344566677777765 3346778889999999998764332222222222222 2222111
Q ss_pred -CCcEEEEEeCCCcEEE---------EeCCC-CceEEEeccCCCCEEEEEEcCCC---------CcEEEEEECCCcEEEe
Q 008005 498 -EQAFIASGSEDSQVYI---------WHRYT-GELVLALAGHSGSVNCVSWNPAN---------LHMLASASDDRTIRIW 557 (581)
Q Consensus 498 -~~~~l~sgs~dg~I~i---------wd~~~-~~~~~~~~~h~~~v~~l~~~p~~---------~~~l~s~s~Dg~I~iW 557 (581)
+|.++.---.+..+.+ |+..+ .+++..+.||...|....|-..+ ...|+|-|.|.++++|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 1112211111113333 33333 36789999999999888775422 1489999999999999
Q ss_pred cCCcc
Q 008005 558 GLDQI 562 (581)
Q Consensus 558 ~~~~~ 562 (581)
-+...
T Consensus 337 pI~~~ 341 (1081)
T KOG0309|consen 337 PIDSQ 341 (1081)
T ss_pred eccHH
Confidence 98753
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.9e-08 Score=94.56 Aligned_cols=274 Identities=10% Similarity=0.101 Sum_probs=162.9
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeE
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGI 374 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 374 (581)
.+.+|+...............-..+++..+++++|++++.+. +..++|++..++..+.+.... .+.++.|+|-+.+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL 88 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYL 88 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeeccccccc
Confidence 377887653211111111111144477888999998777654 568999999988755444333 78899999999888
Q ss_pred EEE-----eC-----CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCc
Q 008005 375 FAG-----MT-----DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 375 ~sg-----~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~ 443 (581)
.+- .. .-.+.+|++.++............-.+..|+.|... ++--..+.+.+|+..+.. ....-+...
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~ 167 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSG 167 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeeeeeccc
Confidence 762 11 235779999875443333222222256777776543 222334567777776643 222233445
Q ss_pred eEEEEECCCC--CEEEE-----EeeCCcEEEEE-----------------------------------------------
Q 008005 444 ITSFSLSKDN--KYLLV-----NLINQEIHLWS----------------------------------------------- 469 (581)
Q Consensus 444 i~~~~~sp~~--~~l~~-----~~~d~~i~iwd----------------------------------------------- 469 (581)
|+.+.+||.+ ..+++ .+.-..+++|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 5555555542 11211 11122344443
Q ss_pred ----------ecCCCceeEEEeccccceeEEEeeecCCCCcEE--EEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 470 ----------IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI--ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 470 ----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l--~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
+.+. .....+ ...++ +....|+++++-+ +-|-.-..+.|||++ +.++..+. +++=+++-|
T Consensus 248 YGEq~Lyll~t~g~-s~~V~L-~k~GP---Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~f 319 (566)
T KOG2315|consen 248 YGEQTLYLLATQGE-SVSVPL-LKEGP---VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFF 319 (566)
T ss_pred cccceEEEEEecCc-eEEEec-CCCCC---ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEE
Confidence 3311 111111 11233 3334446676543 345556788888864 66776665 678899999
Q ss_pred cCCCCcEEEEEECC---CcEEEecCCccccccccC---CCceEEecCCCC
Q 008005 538 NPANLHMLASASDD---RTIRIWGLDQINMKHRDQ---SNGIVHHCNGRI 581 (581)
Q Consensus 538 ~p~~~~~l~s~s~D---g~I~iW~~~~~~~~~~~~---~~~~~~~~~G~~ 581 (581)
+|.| ++|+.+|-+ |.|-|||+.+.++..... ..-+.|+|||+.
T Consensus 320 np~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 320 NPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEY 368 (566)
T ss_pred CCCC-CEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcE
Confidence 9999 788888754 899999999988876655 566789999963
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=2e-07 Score=102.75 Aligned_cols=303 Identities=13% Similarity=0.142 Sum_probs=186.7
Q ss_pred cEEEEEEcCCCCE--EEEEeCCC--eEEEEEcccCCeeeEEEEec-----CCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 274 EVWFLQFSHDGKY--LASSSKDQ--SAIIWEVKEDGQVSLKHRLS-----GHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 274 ~V~~l~~s~~g~~--lasgs~dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
.+...+|.+.... ++++.... .|.+...........+..+. ...+.|.++.|.++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 4566667665543 33333322 34444444333223333332 335679999999999999999999999999
Q ss_pred ----EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-------------C-----------eEEee
Q 008005 345 ----DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-------------R-----------ELESW 396 (581)
Q Consensus 345 ----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-------------~-----------~~~~~ 396 (581)
+..+.. +.....-+.+|.+++|+||+..++..+.++++.+.+-+- + +..++
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 554433 223334467899999999999999999999887764320 0 00000
Q ss_pred c------------cC-----------ccccEEEEEEeeCCCEEEEEEc---C---CeEEEEECCCCee-eEEecCCceEE
Q 008005 397 K------------GQ-----------KTLRISDMAITDDGKRIISICR---E---AAILLLDREANFE-RWIEEEEVITS 446 (581)
Q Consensus 397 ~------------~~-----------~~~~i~~i~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~-~~~~~~~~i~~ 446 (581)
. .. ....-..++|-.||.++++.+- . ..+++|+.+..-. ......+--.+
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~ 261 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGA 261 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCC
Confidence 0 00 1123457889999999998875 2 4799999874322 22233344567
Q ss_pred EEECCCCCEEEEEee---CCcEEEEEecCCCceeEEEeccc-cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 447 FSLSKDNKYLLVNLI---NQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 447 ~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
++|.|.|+++++... ...|.+|.-.+. .-..|.... .....+....|++++..||....|. |.+|...+..-.
T Consensus 262 l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY 338 (928)
T PF04762_consen 262 LSWRPSGNLIASSQRLPDRHDVVFFERNGL--RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY 338 (928)
T ss_pred ccCCCCCCEEEEEEEcCCCcEEEEEecCCc--EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE
Confidence 899999999998765 345667765442 222232221 1122345566699999999987666 999998776532
Q ss_pred --EEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc---ccCCCceEEecCCC
Q 008005 523 --LALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH---RDQSNGIVHHCNGR 580 (581)
Q Consensus 523 --~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~---~~~~~~~~~~~~G~ 580 (581)
..+.. ....+..+.|+|..+..|...+.+|.+..+++.-..... .....+++..-||+
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~ 402 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN 402 (928)
T ss_pred EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC
Confidence 23322 233456699999988888888887877665543221111 12245555556654
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=7.7e-08 Score=97.41 Aligned_cols=191 Identities=11% Similarity=0.095 Sum_probs=127.3
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCC--CcEEEEEc
Q 008005 274 EVWFLQFSHDGKY-LASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQE--EAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~-lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~d--g~i~vwd~ 346 (581)
.+....|||||+. ++..+.+ ..|.++|+.++.. .. +....+......|+|||+.++.. +.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~---lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EK---IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EE---EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999984 6644433 4688888876532 22 22344556678899999877644 333 46888888
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC-
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d- 422 (581)
.+++.. .+..+........|+|||+.|+..+.. + .|+++|+.++.......... ....|+|||+.++.....
T Consensus 265 ~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCC
Confidence 877644 344333334456899999988776643 3 68888998877655443221 124899999999887654
Q ss_pred --------CeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEecC
Q 008005 423 --------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIES 472 (581)
Q Consensus 423 --------g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~ 472 (581)
..|.+.|+.++....+..........|+|||+.++..+..+ .+.++++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 37888998887744443333444689999999888776532 355555554
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=5.9e-09 Score=94.37 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=166.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC--eeeEEEEecCCCC------------CEEEEEeCCCC--CeEEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHRK------------PVFTVSWSPND--HQLLT 334 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~h~~------------~V~~l~~sp~~--~~l~s 334 (581)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+....+++|.- .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999999999999999999999765321 2333445666643 47888887654 45777
Q ss_pred eeCCCcEEEEEcCCCc------------------------------------------EEEEE-ecCCCeEEEEEEecCC
Q 008005 335 CGQEEAIRRWDVNSGE------------------------------------------CLHVY-EKTGVGLISCGWFLDG 371 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~~ 371 (581)
.+.|.+|++|.+.... +.+.+ ..|...+.++.++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 00111 3456678888998887
Q ss_pred CeEEEEeCCCcEEEEeCCC----CeEEeeccCc----cccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-----eeE
Q 008005 372 GGIFAGMTDKSICLWDLDG----RELESWKGQK----TLRISDMAITDD-GKRIISICREAAILLLDREANF-----ERW 437 (581)
Q Consensus 372 ~~l~sg~~dg~i~vwd~~~----~~~~~~~~~~----~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~ 437 (581)
..++++ .|=.|.+|+++- -.+....++. ..-|++..|+|. ...+...+..|.|++-|+++.. ...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 567899998852 2223333222 124778888886 4566777889999999998543 111
Q ss_pred -------------EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc------------ceeEEEe
Q 008005 438 -------------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARFVIRS 492 (581)
Q Consensus 438 -------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~i~~ 492 (581)
......|..+.|+++|+++++-. --++++||.+....++.+..-|.. .++.---
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11234578899999999998754 568999999988888888765542 2222212
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeC
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+.++.+.+.+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 233667888888888877777753
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=1.3e-07 Score=85.70 Aligned_cols=240 Identities=16% Similarity=0.133 Sum_probs=125.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCe--eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
.++.+.||+.||.- .|..|.|=..+++-. .......+...-.=+.++||||+.+||.+...|+|+++|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 46778899988876 577777766553311 011112222222357899999999999999999999999875 33444
Q ss_pred EecCC-------CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 355 YEKTG-------VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 355 ~~~~~-------~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+.... ..|..+.|.+.. . +..|+ ..|++....|.++-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~------------------~---------------s~~ws---~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYK------------------K---------------SAQWS---YELLVINYRGQLRS 123 (282)
T ss_pred cCcccccCCccccceeeeEeeccc------------------c---------------ccccc---eeEEEEeccceeee
Confidence 43221 223333332210 0 00110 11222222232222
Q ss_pred EECCCC--e-----e--eE-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 428 LDREAN--F-----E--RW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 428 ~d~~~~--~-----~--~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
|-+..+ + . .+ ......|.++.++|..+.|++|+.... ..+ . -.+........+..-..|
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCCC
Confidence 221110 0 0 00 112456777888887777777664322 000 0 001111112222222233
Q ss_pred CCcEEEEEeCCCc------EEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 498 EQAFIASGSEDSQ------VYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 498 ~~~~l~sgs~dg~------I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
..+.+. ..+|+. -.+|.+-+.+...........|..|..+||| .+||+...+|.|.+|++....++..
T Consensus 193 yyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 193 YYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred cEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhhcc
Confidence 322222 222221 2344433333333223346789999999999 7999999999999999998877654
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.9e-07 Score=94.61 Aligned_cols=207 Identities=13% Similarity=0.101 Sum_probs=131.9
Q ss_pred CEEEEEeCCCCCe-EEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-C--CCcEEEEeCCCC
Q 008005 319 PVFTVSWSPNDHQ-LLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-T--DKSICLWDLDGR 391 (581)
Q Consensus 319 ~V~~l~~sp~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~--dg~i~vwd~~~~ 391 (581)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++... . +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999985 6544443 468999998887655443 445566788999998876543 2 357888899887
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeC------
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------ 462 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------ 462 (581)
....+..... ......|+|||+.++..+.. + .|+++|+.++........+.. ...|+|||++++.....
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC
Confidence 7666544332 23456899999988877643 2 688889988774222222212 35899999998887654
Q ss_pred ---CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC---cEEEEeCCCCceEEEeccCCCCEEEE
Q 008005 463 ---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRYTGELVLALAGHSGSVNCV 535 (581)
Q Consensus 463 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~v~~l 535 (581)
..|.+.|+.++ . .+.+...... . ...|+|+|+.|+..+.++ .+.+.++. |.....+....+.+...
T Consensus 346 ~~~~~I~v~d~~~g-~-~~~LT~~~~~---~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 346 KNTFNLYLISTNSD-Y-IRRLTANGVN---Q-FPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCCcEEEEEECCCC-C-eEECCCCCCc---C-CeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCC
Confidence 26788888775 2 2333332111 1 233489999876665433 46666764 44444444444444433
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=1.1e-07 Score=90.99 Aligned_cols=188 Identities=17% Similarity=0.264 Sum_probs=138.2
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC--------CCCEEEEE-eCC-CCCeEEEeeCCCcEEEEEcCCCc
Q 008005 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH--------RKPVFTVS-WSP-NDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h--------~~~V~~l~-~sp-~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
+.||+.++.. ..|.|.+||..+..-.++...+.-. ..+...+. |++ +|.+++..+. |...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4577766653 4677999998764321111111111 11111222 443 6888888875 677777766555
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
.++. ++...|.-..+..+++.++.|..|| .+-++|.++++.......-. .|.++..+++|+.++++.....+.++|
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4433 4555687778888888999999999 89999999999877766554 899999999999999999999999999
Q ss_pred CCCCeeeEE--ecCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCC
Q 008005 430 REANFERWI--EEEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESD 473 (581)
Q Consensus 430 ~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~ 473 (581)
+.++..+.+ ...+-|+.+.|+|++++++.+.-+| .|++||+.++
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999985554 4566799999999999999987765 6899999886
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=6.2e-08 Score=86.17 Aligned_cols=257 Identities=10% Similarity=0.015 Sum_probs=164.6
Q ss_pred CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-----CCCeEEEeeCCCcEEEEEcCCCcE-EEEEecCCCeEEEE
Q 008005 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGEC-LHVYEKTGVGLISC 365 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~ 365 (581)
....|-+|+..++.+ ...... ..+.|-| ...+|+.||.-|...+|...+.+. .+....+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 344577888775531 122222 3445554 456899999999999999986543 33333343333222
Q ss_pred EE-ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee-----eEEe
Q 008005 366 GW-FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE-----RWIE 439 (581)
Q Consensus 366 ~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~ 439 (581)
.- ......+..++.|.++++.+++.+............+.++++++|++++++.+....|..|.+..... ....
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 11 11233477788899999999876544333322223488999999999999999999999999877552 2223
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe----ccccceeEEEeeecCCCCc--EEEEEeCCCcEEE
Q 008005 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK----GHKRARFVIRSCFGGFEQA--FIASGSEDSQVYI 513 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~l~sgs~dg~I~i 513 (581)
....-.+..|+.....+++++.||++.|||++....+..... .|.+. ++.|-+++.|. +|+..-.=+.+.+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa---~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA---FRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc---eEEEEecCCCcceEEEEecCcceEEE
Confidence 445567889999999999999999999999998655443322 23343 55666565443 3444444568999
Q ss_pred EeCCCCceEEEec-------cCC-CCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 514 WHRYTGELVLALA-------GHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 514 wd~~~~~~~~~~~-------~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.|++++.....+. .|. ..|..-.|+.++. -+.+.+.+ .+.-|++..
T Consensus 279 ~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~-s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE-SNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEcccCceeeEEecCccccccccccccccccccCCCc-ccccccch-hhheeeccc
Confidence 9999886544332 233 3488888888774 44444443 344555543
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.3e-09 Score=99.32 Aligned_cols=250 Identities=15% Similarity=0.179 Sum_probs=180.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~ 349 (581)
|.+.|+.+..+ -.+++.+++.||.++.|.-..-.....+..+..|...|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 78888887654 3569999999999999987643445666777889999999999999999999777 999999999876
Q ss_pred cEEEEEecCCCeEEEEEEec-CC--C-eEEE-EeCCCcEEEEeCCC--CeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 350 ECLHVYEKTGVGLISCGWFL-DG--G-GIFA-GMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~-~~--~-~l~s-g~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
..+..++...-+= .+.|.. .| . .+++ .-.++.+.++|-.. .+...+...|..+|..+.+.+-+..+++....
T Consensus 87 DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 6543333221111 122222 22 1 2333 33578999999754 35566677788899999999999999999999
Q ss_pred CeEEEEECCCCe-----------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc--
Q 008005 423 AAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-- 483 (581)
Q Consensus 423 g~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 483 (581)
|.|..|...... ..+.......+++.|+|++..+.+-..|..|+++++.++ +.++.+...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccch
Confidence 999999987411 112234566889999999999999999999999999886 333222100
Q ss_pred -----------------------------ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 484 -----------------------------KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 484 -----------------------------~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
.+.......+| ...+++|+-|+-=| |++.++.++.+.+.+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f-des~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF-DESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE-cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 01112233444 67888988887766 889999888777655
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=7.3e-10 Score=107.40 Aligned_cols=237 Identities=14% Similarity=0.257 Sum_probs=162.5
Q ss_pred EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
...+.||...|..++--.+.+.+++++.|.+|++|.++. ..|..++..|+.+|.++.|..+.+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 356789999999988877888999999999999999863 3477889999999999999988777665 5889
Q ss_pred EEEEeCCCCeEEe---eccCccccEEEEEEee--CCCEEEEE-EcCCeEEEEECCCCe--eeE-----EecCCceEEEEE
Q 008005 383 ICLWDLDGRELES---WKGQKTLRISDMAITD--DGKRIISI-CREAAILLLDREANF--ERW-----IEEEEVITSFSL 449 (581)
Q Consensus 383 i~vwd~~~~~~~~---~~~~~~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~--~~~-----~~~~~~i~~~~~ 449 (581)
|.+||.--+.+.. +...+ +.+..+..-+ +...++++ +...+|+++|.+... ..+ ...+..+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999974333221 11122 2333333333 33344444 678899999998866 111 123456889999
Q ss_pred CCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEE-EeCCCCceEEEeccC
Q 008005 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI-WHRYTGELVLALAGH 528 (581)
Q Consensus 450 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i-wd~~~~~~~~~~~~h 528 (581)
.+.|++++++-.+|.|.+.|.+++ +.+..+.........+ . .|..+.++....|.++.+ |..-+|....+.+..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllql---a-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQL---A-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhh---c-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999998 6666555443321111 1 567778888888999999 998777666655543
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 529 SGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 529 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
..+..-+. .-|+ -++++.....+.+|
T Consensus 960 pepahflq--svgp-SLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 960 PEPAHFLQ--SVGP-SLVTAQNGNILGVY 985 (1034)
T ss_pred Ccchhhhh--ccCc-eeEEeccCcEEEEE
Confidence 32221111 1132 34555444455555
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.3e-07 Score=92.36 Aligned_cols=254 Identities=14% Similarity=0.182 Sum_probs=161.2
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-----------CCcEEEEeC
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDL 388 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----------dg~i~vwd~ 388 (581)
-+.+.|||.|.||+|--..| |.+|--.+-..++.|.. ..|.-+.|+|+.++|+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987765 88997555555555533 35778999999999998543 247999999
Q ss_pred CCCeEEeeccC---ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeC-
Q 008005 389 DGRELESWKGQ---KTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLIN- 462 (581)
Q Consensus 389 ~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d- 462 (581)
.++.+...... ....-.-..||.|+++++.... ..|.+|+..... ....-....|..+.|+|.++.|+.=+..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 98876554433 1112345689999999988766 678888877633 1222234568899999998888764432
Q ss_pred ----CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC----------CCcEEEEeCCCCceEEEeccC
Q 008005 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE----------DSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 463 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h 528 (581)
..+.+..+.+. +.++.-..+.-.. + -.+|..+|.+|+.--. =..+-|+.++....--....-
T Consensus 369 ~~~parvtL~evPs~-~~iRt~nlfnVsD--c-kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSK-REIRTKNLFNVSD--C-KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cCCcceEEEEecCcc-ceeeeccceeeec--c-EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 24556666554 3333333222211 1 2334667777764321 113445555443322222224
Q ss_pred CCCEEEEEEcCCCCcEEEEEECC--CcEEEecCCccccc-------cccCCCceEEecCCCC
Q 008005 529 SGSVNCVSWNPANLHMLASASDD--RTIRIWGLDQINMK-------HRDQSNGIVHHCNGRI 581 (581)
Q Consensus 529 ~~~v~~l~~~p~~~~~l~s~s~D--g~I~iW~~~~~~~~-------~~~~~~~~~~~~~G~~ 581 (581)
...|...+|-|.|.++.+..+.+ .++.+|.+++.... .....+.+.|+|.|++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRF 506 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcE
Confidence 56889999999995443333333 57999998842211 1233899999999985
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.3e-09 Score=97.43 Aligned_cols=170 Identities=18% Similarity=0.347 Sum_probs=133.9
Q ss_pred EEEEecC--CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------e
Q 008005 364 SCGWFLD--GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------E 435 (581)
Q Consensus 364 ~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~ 435 (581)
.|+|+-+ +.+ ++.+.+-.|-+-|+.++....+. ....|.++.|...++.+..|+.+|.|..+|++... .
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466542 333 55566778888899887766665 33478899999989999999999999999998763 6
Q ss_pred eEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCce---eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcE
Q 008005 436 RWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
..+.|+..|+++..-. ++.+|++.+.+|.|.+||++.. +. +..+.+|......+.... .+....|++++.|...
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccc-ccccceEEEccCeeEE
Confidence 6778999999998877 8889999999999999999875 44 888999988655554444 6677788899999999
Q ss_pred EEEeCCCCceEEEeccCC----CCEEEEEEc
Q 008005 512 YIWHRYTGELVLALAGHS----GSVNCVSWN 538 (581)
Q Consensus 512 ~iwd~~~~~~~~~~~~h~----~~v~~l~~~ 538 (581)
+||.+++|.++.+++-.. ..+.+++|.
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehh
Confidence 999999999998887543 245555554
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=5.1e-07 Score=85.04 Aligned_cols=220 Identities=17% Similarity=0.136 Sum_probs=139.4
Q ss_pred CCcEEEEEcCCCcEEEEEecCC--CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 338 EEAIRRWDVNSGECLHVYEKTG--VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
+|+|..||..+|+.+....... ....+. ..++++.+++++.++.|..||..+++..-...... .+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccc
Confidence 6889999999999988886421 122211 23367788888999999999998777643333221 211112 334567
Q ss_pred EEEEEcCCeEEEEECCCCeeeEE-ecCC-----ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccce-e
Q 008005 416 IISICREAAILLLDREANFERWI-EEEE-----VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-F 488 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~-~~~~-----~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 488 (581)
+++++.++.++.+|..++...+. .... .........++..++++..++.|..+|..++ +.+..+....... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCc
Confidence 77778889999999999885444 2211 1122223334788888888999999999998 6666665533221 1
Q ss_pred E------EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 489 V------IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 489 ~------i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
. +.......++ .++.++.++.+..+|+.+++.+.... ...+..+ ..+++ ..|+.++.++.|..||+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCC
Confidence 0 1111112234 77777777864444999998664333 3334442 23455 46777779999999999998
Q ss_pred cccc
Q 008005 563 NMKH 566 (581)
Q Consensus 563 ~~~~ 566 (581)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=3.6e-07 Score=81.40 Aligned_cols=191 Identities=7% Similarity=0.003 Sum_probs=132.8
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCe
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG 361 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (581)
...+||.|+..|...+|...++.. .......|...|+-+.=.- ....+..++.|.++++.+++-+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 345899999999999999986542 2233334444433222111 2234677788999999988765443333333344
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--EEe-eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----
Q 008005 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LES-WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---- 434 (581)
Q Consensus 362 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---- 434 (581)
+.++.+++|+++.++.+....|..|.++... +.. ........--+..|+.....++++..||++.+||++...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 8899999999999999999999999986422 222 222333345677899999999999999999999998754
Q ss_pred ---eeEEecCCceEEEEECCCCC--EEEEEeeCCcEEEEEecCCCc
Q 008005 435 ---ERWIEEEEVITSFSLSKDNK--YLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 435 ---~~~~~~~~~i~~~~~sp~~~--~l~~~~~d~~i~iwd~~~~~~ 475 (581)
.....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++...
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 22335788999999998664 455444567899999998743
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=7.1e-07 Score=90.74 Aligned_cols=258 Identities=11% Similarity=0.084 Sum_probs=155.2
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEE-EEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
+..++.++.+|.+.-+|..++... ...... ..+.+ ... .+..++.+..++.+..+|..+|+.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVA---WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCc---ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 456777888999999998876432 222211 11211 111 24467777888999999999999888775431111
Q ss_pred -----EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc----c---cEEEEEEee--CCCEEEEEEcCCeEEEE
Q 008005 363 -----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT----L---RISDMAITD--DGKRIISICREAAILLL 428 (581)
Q Consensus 363 -----~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----~---~i~~i~~~~--~~~~l~~~~~dg~i~i~ 428 (581)
.+... .+..++.++.+|.+..+|..+++..-...... . ....+..+| .+..+++++.+|.+..+
T Consensus 194 ~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 194 TLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 01111 23467778889999999987765422111000 0 011111122 24577778889999999
Q ss_pred ECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
|..++...+.........+.. .+..+++++.++.+..+|..++ +.+-.......... ... ...+..|+.++.|
T Consensus 272 d~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~--~sp--~v~~g~l~v~~~~ 344 (394)
T PRK11138 272 DLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLL--TAP--VLYNGYLVVGDSE 344 (394)
T ss_pred ECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcc--cCC--EEECCEEEEEeCC
Confidence 999988555433222222222 4667888888999999999887 33322211111100 000 0124677889999
Q ss_pred CcEEEEeCCCCceEEEeccCCCCEEE-EEEcCCCCcEEEEEECCCcEEEecC
Q 008005 509 SQVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
|.|++.|..+|+.+.........+.+ ..+. ++ .|+.++.||.|..++.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence 99999999999998877644333332 2222 33 6888899999988764
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=1.5e-08 Score=101.82 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=167.1
Q ss_pred EEEEEEcCCC--CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCCc-
Q 008005 275 VWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE- 350 (581)
Q Consensus 275 V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~- 350 (581)
|-.+.|+|.. .+-++........+|++.....-.....+.+|..+|+.+-|+|. ...+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4556677643 24444444556789998755444556678899999999999984 4679999999999999998864
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDD-GKRIISICREAAILLL 428 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~ 428 (581)
.+..+..-......+.|+-....+++.+..+.|.+||++. .....+...+...++.++|..- ...+.+.+.|++|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 4445545556677899998777777778888999999964 4444444446667788877653 3467888999999999
Q ss_pred ECCCCe---eeEEecCCceEEEEECCCCCEEEEE-----------eeCCcEEEEEecCCCceeEEEeccccceeEEEe--
Q 008005 429 DREANF---ERWIEEEEVITSFSLSKDNKYLLVN-----------LINQEIHLWSIESDPKLVSRYKGHKRARFVIRS-- 492 (581)
Q Consensus 429 d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~-----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~-- 492 (581)
|..... ........+|..-.+.|-|.-.++- -.++.-..|+..+...++..|.||...+....+
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 987655 4445556666666666644322221 113334456666677889999999875432111
Q ss_pred ---eec--CCCCcEEEEEeCCCcEEEEeCCC
Q 008005 493 ---CFG--GFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 493 ---~~~--~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
|.+ ....-.|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 111 11223689999999999997654
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=9.2e-06 Score=76.80 Aligned_cols=215 Identities=14% Similarity=0.092 Sum_probs=140.6
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC-CCCCeEEEeeCCCcEEEEEcCCCcEEEE
Q 008005 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 277 ~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
++.|.+ ++.++++--..+.|..|+..++. . ....+.+ ...+++. +++ .|+.+... .+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-~-~~~~~~~----~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-V-EVIDLPG----PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-E-EEEESSS----EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-E-EEEecCC----CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 577888 77777777778999999987642 1 1122222 6677777 565 45555554 456669999866554
Q ss_pred Eec-----CCCeEEEEEEecCCCeEEEEeCC--------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEE-EE
Q 008005 355 YEK-----TGVGLISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS-IC 420 (581)
Q Consensus 355 ~~~-----~~~~v~~~~~~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~ 420 (581)
... .....+.+++.++|+..++.... |.|..++.. ++....... ....+.++|+|+++.|+. -+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeeccc
Confidence 443 34678899999999876665543 568888887 454443332 236889999999998764 56
Q ss_pred cCCeEEEEECCCCe------eeEEecC---CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 421 REAAILLLDREANF------ERWIEEE---EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 421 ~dg~i~i~d~~~~~------~~~~~~~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
..+.|..+++.... ..+.... +....++++.+|++.++....+.|.++|.+. +.+..+..... ....
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--~~~~~i~~p~~--~~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--KLLREIELPVP--RPTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS--CEEEEEE-SSS--SEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc--cEEEEEcCCCC--CEEE
Confidence 67889999985322 2222222 2478899999999888888899999999873 66666665522 3455
Q ss_pred eeecCCCCcEEEEE
Q 008005 492 SCFGGFEQAFIASG 505 (581)
Q Consensus 492 ~~~~~~~~~~l~sg 505 (581)
++|..++.+.|+..
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 66656675655443
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4e-07 Score=85.72 Aligned_cols=257 Identities=16% Similarity=0.156 Sum_probs=153.3
Q ss_pred EEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-Ce
Q 008005 296 AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GG 373 (581)
Q Consensus 296 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 373 (581)
|+..+..+- +....+.+|...|..++|+|... ++..++.+..|+|.|+++..++..+..+ ..+++|+|.-|. ++
T Consensus 175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence 455544332 33346677888999999999766 7888999999999999999999988887 689999998865 45
Q ss_pred EEEEeCCCcEEEEeCCCCe--EEeecc-CccccEEEEEEe------eCCCEEEEEEcCCeEEEEECCCCe-----eeEEe
Q 008005 374 IFAGMTDKSICLWDLDGRE--LESWKG-QKTLRISDMAIT------DDGKRIISICREAAILLLDREANF-----ERWIE 439 (581)
Q Consensus 374 l~sg~~dg~i~vwd~~~~~--~~~~~~-~~~~~i~~i~~~------~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~ 439 (581)
+++|..+|.|.+||++..+ +..... ....+|..++.- +.|..++....+ +..|...... ....+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence 7778889999999997432 111111 122244444332 234444444332 3344443322 12234
Q ss_pred cCCceEEEEECCCCCEEEEEeeCC----c---EEE-EEecCCCceeEEEecc----ccceeEEEeeecCCCCcEEE-EEe
Q 008005 440 EEEVITSFSLSKDNKYLLVNLINQ----E---IHL-WSIESDPKLVSRYKGH----KRARFVIRSCFGGFEQAFIA-SGS 506 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~----~---i~i-wd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~-sgs 506 (581)
..+...++.+.+-.+.+++..... . |-. -|..++......-.++ ......-...+..++.++|+ .|.
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 455667777777666666554431 0 111 1111111111111111 11111111222245556555 455
Q ss_pred CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC-CCCcEEEEEECCCcEEEecCC
Q 008005 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
..+.+.+||..+++.+..+.- +.+|.+++... ++..+|++-. |..++||..+
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred CcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 567999999999999998875 47888888554 3444666554 5578888754
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.81 E-value=2.6e-06 Score=80.13 Aligned_cols=219 Identities=15% Similarity=0.153 Sum_probs=133.0
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
+|+|..||..++..+-. ..+..-.....+. ..+++..+++++.++.+..||..+|+.+..+..... +.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~-~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-YDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEE-EECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEE-EECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eeccc
Confidence 67888888876633211 1221111222211 223566788888999999999999999888775322 11111 23466
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEee-ccCc---cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCc-----
Q 008005 373 GIFAGMTDKSICLWDLDGRELESW-KGQK---TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEV----- 443 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~~-~~~~---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 443 (581)
.+++++.++.|+.+|..+++..-. .... ...........++..++++..++.|..+|.+++...+......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 788888889999999877765443 2211 1112233333448889999999999999999988433321111
Q ss_pred -------eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 444 -------ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 444 -------i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+..-....++ .++++..++.+..+|+.++ +..-... ... ..... ...+..+++++.++.|.+||+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg-~~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG-EKLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT-EEEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEEEET
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC-CEEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEEEC
Confidence 1122222244 7777777776444499887 3332222 222 11112 456677887879999999999
Q ss_pred CCCceEE
Q 008005 517 YTGELVL 523 (581)
Q Consensus 517 ~~~~~~~ 523 (581)
.+|+.+-
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998764
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=3.2e-06 Score=86.01 Aligned_cols=270 Identities=8% Similarity=0.001 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEE-----EEEeCC--CCCeEEEeeCCCcEEEEEcCCCcEEEEEe
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-----TVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-----~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
+..+++++.+|.+.-+|..++... -...+........ .+.-.| ++..++.++.+|.+..+|.++|+.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 456667777888888888766422 1111211100000 000011 35567778889999999999999888776
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccE-----EEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008005 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
........... .+..++.+..++.+..+|..+++..-......... ..-.. .+..++.++.++.+..+|..
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 54322111112 24577788889999999998776543322211000 01111 13357778889999999998
Q ss_pred CCeeeEEecC-C--------ceEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 432 ANFERWIEEE-E--------VITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 432 ~~~~~~~~~~-~--------~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
++...+.... . ....+..+| .+..+++++.++.+..+|..++ +.+-........ .. ...+.
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~----~~---~~~~~ 295 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-QIVWKREYGSVN----DF---AVDGG 295 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-CEEEeecCCCcc----Cc---EEECC
Confidence 8873332110 0 011112223 3556777788999999999887 333322211100 01 12456
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCC-CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
.|+.++.+|.++.+|..+|+.+-....-. ....+.... + ..|+.++.||.|.+.|..+++...+..
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N--GYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C--CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 77888899999999999998765433211 112222222 3 367888999999999999998876543
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=7.6e-08 Score=85.29 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=118.5
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE------------EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL------------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
|+.+.++. ...|+++..++.+......++.+. +.+..+..+-.+-..+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55566653 345667766766666554444332 22222222211222223467899999999999999
Q ss_pred CCCCe-EEeeccCccccEEEEEEeeCCCEEEEEE-----cCCeEEEEECCCCe--eeEEecCCceEEEEECCCC-CEEEE
Q 008005 388 LDGRE-LESWKGQKTLRISDMAITDDGKRIISIC-----REAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLV 458 (581)
Q Consensus 388 ~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-----~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~ 458 (581)
.+.-. ...........--+.++...++.+.++. .-+..+.|+++... .........+++++-+|.. +.+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 86411 1111111111122233334444444332 23445666665544 2222233449999999954 56677
Q ss_pred EeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
|+.||.+-+||.+....+...+..|+..++.+. |...++..|+++++||.+..||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~--FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH--FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhhee--ccCCCchheeEecCCCcEEEEcCCC
Confidence 788999999999998788888999998876654 4456778899999999999999653
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.77 E-value=7e-08 Score=87.53 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=158.0
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-E----EEEEecCC------------CeEEEEEEecCC--CeEEEE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-C----LHVYEKTG------------VGLISCGWFLDG--GGIFAG 377 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-~----~~~~~~~~------------~~v~~~~~~~~~--~~l~sg 377 (581)
...|+++.|...|.||++|...|.|.+|.-+... | ...|+.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999755432 1 22244442 357788888754 357888
Q ss_pred eCCCcEEEEeCCCCeEE-------------------------------------------eeccCccccEEEEEEeeCCC
Q 008005 378 MTDKSICLWDLDGRELE-------------------------------------------SWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 378 ~~dg~i~vwd~~~~~~~-------------------------------------------~~~~~~~~~i~~i~~~~~~~ 414 (581)
+.|.+|++|.+..+.+. .....|...++++.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987432110 01124445678889998888
Q ss_pred EEEEEEcCCeEEEEECCCCee--eE---Eec-----CCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCce---eEEE
Q 008005 415 RIISICREAAILLLDREANFE--RW---IEE-----EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKL---VSRY 480 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~~--~~---~~~-----~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~---~~~~ 480 (581)
.++++ .|-.|.+|++.-... .. .++ ...|++..|+|. ...+...+..|.|++.|++...-+ .+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77765 567888998875431 11 112 245889999994 566777788999999999842111 1111
Q ss_pred e---------ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-CceEEEeccCC------------CCEE---EE
Q 008005 481 K---------GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-GELVLALAGHS------------GSVN---CV 535 (581)
Q Consensus 481 ~---------~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~------------~~v~---~l 535 (581)
. .....+..|.-.-++++|+++++-+. -+|+|||... ..++.++.-|. ..|. .+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1 11122334545556899999886544 4899999875 34666665442 2333 46
Q ss_pred EEcCCCCcEEEEEECCCcEEEecC
Q 008005 536 SWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.|+.+. ..+.+|+.....-|+-.
T Consensus 344 sfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCc-ccccccccccceeeecc
Confidence 788887 57788887777777663
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=1.1e-07 Score=89.62 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=111.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe-eeEEEEecCCCCCEEEEEeCCCCCeEEEe---eCCCcEEEEEcCCCc
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTC---GQEEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~---~~dg~i~vwd~~~~~ 350 (581)
+..+..++.+++||.+..+....++++....+ .++...... ...-+++.|..+......+ +....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556778888888888887777777765443 233332222 2223344444444444444 444556666666555
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
+. .+-+|-.-++.++|+||+++++++..|..|++-.... ..+..+..+|..-|..++..++. .|++++.|++|++||
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 43 3448888999999999999999999999999987754 45556666777789999988765 589999999999999
Q ss_pred CCCCe
Q 008005 430 REANF 434 (581)
Q Consensus 430 ~~~~~ 434 (581)
+.++.
T Consensus 222 ~~sgk 226 (390)
T KOG3914|consen 222 ITSGK 226 (390)
T ss_pred cccCC
Confidence 99886
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=1.3e-07 Score=89.11 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=115.4
Q ss_pred cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ce
Q 008005 403 RISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KL 476 (581)
Q Consensus 403 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~ 476 (581)
....+..++.++.++++..+....+++..... ..........+++.+..+.....++..-|.++-+|+-... ..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556677888888888888887777665543 2222334445566666666677777666666666654422 22
Q ss_pred eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
....-||-.. +.-+.++||+++|+++..|..|+|-.......+..+ -||..-|..++.-++. .|+|+|.|++|+
T Consensus 144 ~~~~lGhvSm---l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 144 CEPILGHVSM---LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred cchhhhhhhh---hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 3334456554 334445999999999999999999887766555555 4699999999998865 699999999999
Q ss_pred EecCCccccccccC
Q 008005 556 IWGLDQINMKHRDQ 569 (581)
Q Consensus 556 iW~~~~~~~~~~~~ 569 (581)
+||+.+++..+...
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999887655
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=2.5e-05 Score=69.82 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=146.7
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
-|++++.|...|.+++.+..++.+......... -.+ .....+++..+..++.|++....|..+..++...+......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 367899999999999999998754322222111 111 22346789999999999999999999999998887766666
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec-cCccccEEE--EEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe
Q 008005 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISD--MAITDDGKRIISICREAAILLLDREANFERWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~--i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 439 (581)
.+-+..|-...|+.+...|.|.--..+......+- .....++-. ++. +..+..++-||.+.-+|-...+.....
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~sG~qvwr~~ 215 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFDESGRQVWRPA 215 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEcCCCcEEEeec
Confidence 66667775556777777777766665543222211 111112211 111 334555666777766663332233233
Q ss_pred cCCceEE-EEEC-CCCCEEEEEeeCCcE--------EEEEecCCCceeEEEeccccceeEEEeeecCC---CCcEEEEEe
Q 008005 440 EEEVITS-FSLS-KDNKYLLVNLINQEI--------HLWSIESDPKLVSRYKGHKRARFVIRSCFGGF---EQAFIASGS 506 (581)
Q Consensus 440 ~~~~i~~-~~~s-p~~~~l~~~~~d~~i--------~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~sgs 506 (581)
..++|.. -+-+ |..+.+..+..+..+ .+|....+ .....+.... ++..+.++ ..+++..++
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s 289 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSPK-----LRFDLHSPGISYPKLLRRSS 289 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCcc-----cceeccCCCCcchhhhhhhc
Confidence 3333321 1111 333444444333322 34444443 1111111111 11222122 246788889
Q ss_pred CCCcEEEEeCCCCceEEEeccCCCCEEEEE--------E-cC---CCCcEEEEEECCCcEEEecCCcc
Q 008005 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVS--------W-NP---ANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~--------~-~p---~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.||.+.|.-.. +.+.....|.+.+..+. | +| +| .|+.|+.|..|+-||+++.
T Consensus 290 ~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 290 GDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred CCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence 99988887432 22444444444333322 1 12 34 6788899999999999864
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=3e-06 Score=76.96 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=116.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeee--EEEEe-cCCCCCEEEEEeCCC------CCeEEEeeCCCcEEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS--LKHRL-SGHRKPVFTVSWSPN------DHQLLTCGQEEAIRRW 344 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~--~~~~~-~~h~~~V~~l~~sp~------~~~l~s~~~dg~i~vw 344 (581)
.=..++||||+.+||.+...|+|+++|+....-+. ....+ ..-..+|..+.|.+. ...|++-..+|.++-|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 34579999999999999999999999997432110 00101 112356777777652 2257777888888888
Q ss_pred EcCCC-----cEEEEEec---CCCeEEEEEEecCCCeEEEEeCCCc-----------EEEEeCCCCeEEeeccCccccEE
Q 008005 345 DVNSG-----ECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKS-----------ICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 345 d~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~-----------i~vwd~~~~~~~~~~~~~~~~i~ 405 (581)
-+..+ +..+.+.. ....|.++.|+|..+.|++|+.... +..|.+-... +-.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----------PYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----------CcE
Confidence 76432 33344432 3678999999999888888765322 2333321110 100
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
......+...-...... .++.+-+.. .........|..|..||||..|++...+|.|.+|++.+- .....+...
T Consensus 195 k~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~~ 270 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQD 270 (282)
T ss_pred EEccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccchh
Confidence 00001101110111111 122222111 111234677999999999999999999999999999876 555555444
Q ss_pred cc
Q 008005 484 KR 485 (581)
Q Consensus 484 ~~ 485 (581)
..
T Consensus 271 eq 272 (282)
T PF15492_consen 271 EQ 272 (282)
T ss_pred hC
Confidence 33
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.73 E-value=1.5e-05 Score=79.69 Aligned_cols=264 Identities=15% Similarity=0.162 Sum_probs=147.2
Q ss_pred cCCCCEEEEE---------eCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 281 SHDGKYLASS---------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 281 s~~g~~lasg---------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
|||+++++.. +..+.+.|||+.++.. ..+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6888877764 2346789999987521 22222256788999999999998875 57899999887754
Q ss_pred EEEEecCC-----------------CeEEEEEEecCCCeEEEEeCCC---------------------------------
Q 008005 352 LHVYEKTG-----------------VGLISCGWFLDGGGIFAGMTDK--------------------------------- 381 (581)
Q Consensus 352 ~~~~~~~~-----------------~~v~~~~~~~~~~~l~sg~~dg--------------------------------- 381 (581)
.+.-.... ..-..+.|+||+++|+....|-
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 43221110 1224678999999988753321
Q ss_pred ---cEEEEeCCCCeEEeec-----cCccccEEEEEEeeCCCEEEEEE--cC---CeEEEEECCCCeee---EEecCCce-
Q 008005 382 ---SICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISIC--RE---AAILLLDREANFER---WIEEEEVI- 444 (581)
Q Consensus 382 ---~i~vwd~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~--~d---g~i~i~d~~~~~~~---~~~~~~~i- 444 (581)
.+.++|+.+++..... .....-+..+.|.++++.++..- ++ ..+.++|..++... .......+
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 1344555544432111 12234678899999998444443 22 24677788766522 12222222
Q ss_pred --EEEEEC-CCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEEeCCC----cEEEEe
Q 008005 445 --TSFSLS-KDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDS----QVYIWH 515 (581)
Q Consensus 445 --~~~~~s-p~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg----~I~iwd 515 (581)
....+. +++. ++.....+|.-+||-+.......+.+....-.+. ....+.++++ +.+++..++ .|+.-+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~--~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVT--SILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EE--EEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeec--ccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 245554 5555 4445556776666655544344444443333322 2333355544 445666533 566667
Q ss_pred CCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 516 RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 516 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+..+.....+....+....+.|+|++..++.+++.-
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 763444555655444447999999996666666643
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=5e-08 Score=89.80 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=114.7
Q ss_pred EEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC----CceeEEEeccccceeEEEe
Q 008005 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD----PKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~i~~ 492 (581)
++.+.+..+-+.|+.++....+...+.|.++.|...++.+..|..+|.|..+|++.. ......+ .|...+..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 455667788899999998777778889999999999999999999999999999875 2222222 24444333333
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCce---EEEeccCCCCEEEE--EEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGEL---VLALAGHSGSVNCV--SWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~v~~l--~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
. ..++++|++.+.+|+|++||.+--++ +.++.||...-.-+ -.++.. ..++++|+|...|||.++.+.+...
T Consensus 307 L--q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 307 L--QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred h--ccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeec
Confidence 3 23678999999999999999877666 88888885433322 234555 5888999999999999999988876
Q ss_pred cCCCc
Q 008005 568 DQSNG 572 (581)
Q Consensus 568 ~~~~~ 572 (581)
.+...
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 65433
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=3.9e-08 Score=62.94 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.1
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd 300 (581)
++++++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999999999999999999997
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=1.9e-05 Score=74.04 Aligned_cols=201 Identities=16% Similarity=0.238 Sum_probs=136.0
Q ss_pred EEEEcC-CCCEEEEEeCCCe-EEEEEcccCCeeeEEEEecCCCCC--EEEEEeCCCCCeEEEeeC-----CCcEEEEEcC
Q 008005 277 FLQFSH-DGKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKP--VFTVSWSPNDHQLLTCGQ-----EEAIRRWDVN 347 (581)
Q Consensus 277 ~l~~s~-~g~~lasgs~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~~~-----dg~i~vwd~~ 347 (581)
.++.+| .+..++.+-.-|+ ..+||..++.... .+....+. --.-.||+||++|++.-. .|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 567788 5566777776665 6788888764332 22221111 123579999999998743 4789999998
Q ss_pred -CCcEEEEEecCCCeEEEEEEecCCCeEEEEeC------------------CCcEEEEeCCCCeEEeec----cCccccE
Q 008005 348 -SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT------------------DKSICLWDLDGRELESWK----GQKTLRI 404 (581)
Q Consensus 348 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------------------dg~i~vwd~~~~~~~~~~----~~~~~~i 404 (581)
+-+.+..+..+.-....+.+.||+..|+++.. +-++...|..++++.... ..+...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 66778888888877888999999988887532 234566666676655442 3355679
Q ss_pred EEEEEeeCCCEEEEEEcCC-------eEEEEECCCCe-------eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEE
Q 008005 405 SDMAITDDGKRIISICREA-------AILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWS 469 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg-------~i~i~d~~~~~-------~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd 469 (581)
..+++.++|..++..-..| -|.+++..... ..+......+-+|++++++.++++.+- .+.+.+||
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 9999999997776664433 24444443322 112234577999999999988866654 67899999
Q ss_pred ecCCCceeEEEe
Q 008005 470 IESDPKLVSRYK 481 (581)
Q Consensus 470 ~~~~~~~~~~~~ 481 (581)
..++ ..+....
T Consensus 246 ~~tg-~~~~~~~ 256 (305)
T PF07433_consen 246 AATG-RLLGSVP 256 (305)
T ss_pred CCCC-CEeeccc
Confidence 9887 5554443
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.67 E-value=5.3e-06 Score=88.93 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=140.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc----
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV---- 346 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~---- 346 (581)
-.+.|.++.|..++.-++.+..+|.|.+-|..+. .......-.+.|.+++|+||+..++..+..+++.+-+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 3478999999999999999999999999987753 22233345678999999999999999888877766432
Q ss_pred CC-------------------CcEEEEEecC---------------------CCeEEEEEEecCCCeEEEEe----CC-C
Q 008005 347 NS-------------------GECLHVYEKT---------------------GVGLISCGWFLDGGGIFAGM----TD-K 381 (581)
Q Consensus 347 ~~-------------------~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~sg~----~d-g 381 (581)
-. |+....|.+. ...=+++.|--||.++++.. .+ .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11 1111112111 11223589999999988732 23 7
Q ss_pred cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE---cCCeEEEEECCCCee-----eEEecCCceEEEEECCCC
Q 008005 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANFE-----RWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-----~~~~~~~~i~~~~~sp~~ 453 (581)
.|++||-+ +.+........+.-.+++|-|.|..+++.. +++.|.++..+.-.. .+......+..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 99999987 555555554555667899999999988874 466799998766542 222333448999999999
Q ss_pred CEEEE---EeeCCcEEEEEecCC
Q 008005 454 KYLLV---NLINQEIHLWSIESD 473 (581)
Q Consensus 454 ~~l~~---~~~d~~i~iwd~~~~ 473 (581)
..|++ ......|++|-+.+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99998 444556999988764
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.66 E-value=7e-08 Score=61.74 Aligned_cols=39 Identities=46% Similarity=0.921 Sum_probs=36.6
Q ss_pred CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|+++.++.+|.+.|++++|+|++ .+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46788999999999999999998 7999999999999997
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.63 E-value=3.1e-05 Score=83.25 Aligned_cols=239 Identities=12% Similarity=0.120 Sum_probs=150.3
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-----CC
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-----GR 391 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-----~~ 391 (581)
.+.|.++.|..++..++.+..+|.|.+-|.++.... ....-..+|.+++|+||+..++..+..+++.+-+-. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 367999999999999999999999999998876532 233446789999999999999998888887764421 00
Q ss_pred eE-------------------EeeccC--------------------ccccEEEEEEeeCCCEEEEEE----cC-CeEEE
Q 008005 392 EL-------------------ESWKGQ--------------------KTLRISDMAITDDGKRIISIC----RE-AAILL 427 (581)
Q Consensus 392 ~~-------------------~~~~~~--------------------~~~~i~~i~~~~~~~~l~~~~----~d-g~i~i 427 (581)
.+ ..+.+. ....=+.+.|-.||.++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00 011100 001223589999999998843 23 78999
Q ss_pred EECCCCe-eeEEecCCceEEEEECCCCCEEEEEee---CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE
Q 008005 428 LDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 428 ~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
||.+..- .......+.-.+++|-|.|..+++... ++.|.+|.-.+...--..+.-...... +.-..|..++..|+
T Consensus 227 ~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~-ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE-VEELAWNSNSDILA 305 (1265)
T ss_pred ecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc-hheeeecCCCCcee
Confidence 9988322 222334455678999999999888643 567888876543111111111111111 23334477788887
Q ss_pred E---EeCCCcEEEEeCCCCceE--EEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 504 S---GSEDSQVYIWHRYTGELV--LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 504 s---gs~dg~I~iwd~~~~~~~--~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+ ......|++|-+.+-.-. ..+.-..... +.|+|..+..+..-..+|.+.++++
T Consensus 306 v~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7 444556999987765432 2222222222 7788866555555556676666554
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=3.9e-07 Score=80.86 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=102.8
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-----CCcE
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-----EEAI 341 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-----dg~i 341 (581)
.+.-|.++-.+-+.+-.+..++++..||.+.+++.+.. +...+....-...-.+.+....++.+.+++. -+..
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 33345544444444555677999999999999998742 1111111111111122223334555554432 2345
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe-EEeeccCccccEEEEEEee-CCCEEEE
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITD-DGKRIIS 418 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~ 418 (581)
+.|+++..+....-......|.+++-+|.. ..+++|+.||.+.+||.+... .......|..++..+-|+| ++..|++
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 666665443332222334458888888854 456778889999999998653 3444556677899999998 5678999
Q ss_pred EEcCCeEEEEECCC
Q 008005 419 ICREAAILLLDREA 432 (581)
Q Consensus 419 ~~~dg~i~i~d~~~ 432 (581)
++.||.+..||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999775
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1e-05 Score=83.76 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=135.2
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCe-EEEEEEecCCCeEEEEeCCC-----cEEEEeCCCC-
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG-LISCGWFLDGGGIFAGMTDK-----SICLWDLDGR- 391 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~- 391 (581)
.|+| |++.+..++.|+.+|.|.+.+ ..-+.++.+..+... |..+....+...|++.+.|+ .|++|+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 577888999999999988877 334445777777666 43333333346777776665 4899999521
Q ss_pred --e---EE---eec----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC------eeeEEecCCceEEEEECCCC
Q 008005 392 --E---LE---SWK----GQKTLRISDMAITDDGKRIISICREAAILLLDREAN------FERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 392 --~---~~---~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~sp~~ 453 (581)
. +. ... +....++.+++++.+-+.+|+|-.+|.|..+.-+-. .........+|+.+++..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1 11 111 123457899999999999999999999999864321 13334567889999999998
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC-CcEEEEEeCCCcEEEEeCCCCceEEEec-cCCCC
Q 008005 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVYIWHRYTGELVLALA-GHSGS 531 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~ 531 (581)
+.++.......|.+|.+.+.......+..+... +.|..+++. +.++++++ ..+++|+.....+...+. +|...
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~---lnCss~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS---LNCSSFSDGTYQFICAGS--EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCcc---ceeeecCCCCccEEEecC--ceEEEEcCCCcceeeeecCCCeEE
Confidence 885555557789999998654223334444443 333332333 33444443 359999988777777777 66654
Q ss_pred EEE
Q 008005 532 VNC 534 (581)
Q Consensus 532 v~~ 534 (581)
...
T Consensus 259 ~~~ 261 (933)
T KOG2114|consen 259 MLV 261 (933)
T ss_pred EEE
Confidence 433
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=9.5e-06 Score=80.99 Aligned_cols=252 Identities=18% Similarity=0.185 Sum_probs=146.2
Q ss_pred CCCCCeEEEee---------CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee
Q 008005 326 SPNDHQLLTCG---------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 326 sp~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 396 (581)
|||+++++... ..+.+.+||+++++....... ...+....|+|+|+.++... ++.|.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777776642 346799999999876544333 55678899999999988875 57899999876655444
Q ss_pred ccCc-----------------cccEEEEEEeeCCCEEEEEEcCC------------------------------------
Q 008005 397 KGQK-----------------TLRISDMAITDDGKRIISICREA------------------------------------ 423 (581)
Q Consensus 397 ~~~~-----------------~~~i~~i~~~~~~~~l~~~~~dg------------------------------------ 423 (581)
.... -..-..+-|+||+++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 3322 12345788999999988775431
Q ss_pred eEEEEECCCCeeeEE-------ecCCceEEEEECCCCCEEEEEeeCC-----cEEEEEecCCCceeEEEecccccee-EE
Q 008005 424 AILLLDREANFERWI-------EEEEVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARF-VI 490 (581)
Q Consensus 424 ~i~i~d~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~-~i 490 (581)
.+.++|+.++..... .....+..+.|.++++.|++.-.+. .+.++|..++.............+. .-
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 244455555542111 1234578899999998554443322 4677788765332222211111110 01
Q ss_pred Eeeec-CCCCcEEEEEeCCC--cEEEEeCCCCceEEEeccCCCCEEE-EEEcCCCCcEEEEEECCC----cEEEecCC-c
Q 008005 491 RSCFG-GFEQAFIASGSEDS--QVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDR----TIRIWGLD-Q 561 (581)
Q Consensus 491 ~~~~~-~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg----~I~iW~~~-~ 561 (581)
...++ ..++.++.....|| .|++++...+. ...+....-.|+. +.|++++..+++++..++ .|..-+++ .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 12232 45566677777788 56666766555 4456555666755 678888766667777643 45445555 3
Q ss_pred cccc---cccCCC-ceEEecCCC
Q 008005 562 INMK---HRDQSN-GIVHHCNGR 580 (581)
Q Consensus 562 ~~~~---~~~~~~-~~~~~~~G~ 580 (581)
+... .....+ .+.++|||+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSS
T ss_pred CCeEeccCCCCCceEEEECCCCC
Confidence 3322 233345 789999986
No 318
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.54 E-value=0.00032 Score=68.12 Aligned_cols=271 Identities=15% Similarity=0.157 Sum_probs=138.3
Q ss_pred EEcCCCCEEEEEe-CCCe--EEEEEcccCCeeeEEEEecCCCC-CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE
Q 008005 279 QFSHDGKYLASSS-KDQS--AIIWEVKEDGQVSLKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 279 ~~s~~g~~lasgs-~dg~--i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
+|.+||+.|+.++ .||. +.+.|+.++ .+..+....+ ......++|+++.++-......++-.|+.+.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 5788997655544 4655 455566553 2233443322 222466778888877666667899999999988777
Q ss_pred EecCCCeEEEEEEec--CCCeEEEEeC----------------------CCcEEEEeCCCCeEEeeccCccccEEEEEEe
Q 008005 355 YEKTGVGLISCGWFL--DGGGIFAGMT----------------------DKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 355 ~~~~~~~v~~~~~~~--~~~~l~sg~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~ 410 (581)
+......+-...|.. |+..++-.-. ...|...|+.+++......... .+..+.++
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fs 196 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFS 196 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccC
Confidence 777777776666653 4444432211 1246666888887766665443 78889999
Q ss_pred eCCCEEEEEEcCC-------eEEEEECCCCeeeE---EecCCceEEEEECCCCCEEEEEee-----CCcEEEEEecCCCc
Q 008005 411 DDGKRIISICREA-------AILLLDREANFERW---IEEEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDPK 475 (581)
Q Consensus 411 ~~~~~l~~~~~dg-------~i~i~d~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~ 475 (581)
|....+++-|..| .|-+.+........ ......+.-=-|.|||..+..-+. +..|.-+|..+...
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 9877777776544 34444444433211 122334555678999987765433 23466667776522
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCC----------------cEEEEeCCCCceEEE---------eccCCC
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS----------------QVYIWHRYTGELVLA---------LAGHSG 530 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg----------------~I~iwd~~~~~~~~~---------~~~h~~ 530 (581)
....... . .... ..+++|++++.=+.|. -|++++...+..... +.+|..
T Consensus 277 -~~~~~~p-~---~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 277 -RRLMEMP-W---CSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEEEEE--S---EEEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred -eEEEeCC-c---eeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 2111111 1 1222 2278888887655442 567788876654311 111111
Q ss_pred -CEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 531 -SVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 531 -~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.=-...|+||+..+|.++...|...||-++
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 124678999998888888889988887654
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=4.1e-05 Score=71.92 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=132.9
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEe-----CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSS-----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG- 336 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~- 336 (581)
..-+-|.|| -.||+||++|++.- ..|.|-|||.. ..+..+..+..|--.-..+.+.|||+.|+++-
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 344455566 56999999999863 45889999997 34577788888877778899999998877762
Q ss_pred -----------------CCCcEEEEEcCCCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeCCC-------cEEEEeC
Q 008005 337 -----------------QEEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDK-------SICLWDL 388 (581)
Q Consensus 337 -----------------~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg-------~i~vwd~ 388 (581)
.+..+..-|..+|+.+.... .|...+..+++.++|..++..-..| .|.+++.
T Consensus 119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~ 198 (305)
T PF07433_consen 119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR 198 (305)
T ss_pred CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC
Confidence 12346667788888776633 3677899999999987666655444 2444443
Q ss_pred CCCeEEeec------cCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEee
Q 008005 389 DGRELESWK------GQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 389 ~~~~~~~~~------~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
... +.... ..-...+-+|++++++..+++.+ ..+.+.+||..++.......-..+..++..+++ ++++ +.
T Consensus 199 g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s-sG 275 (305)
T PF07433_consen 199 GGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS-SG 275 (305)
T ss_pred CCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe-CC
Confidence 321 11111 11224789999999998876655 677899999999886655566667777777777 4444 43
Q ss_pred CCcEE
Q 008005 462 NQEIH 466 (581)
Q Consensus 462 d~~i~ 466 (581)
.|.+.
T Consensus 276 ~G~~~ 280 (305)
T PF07433_consen 276 QGQLI 280 (305)
T ss_pred CccEE
Confidence 45433
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.3e-05 Score=82.96 Aligned_cols=204 Identities=14% Similarity=0.224 Sum_probs=139.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCC-EEEEEeCCCCCeEEEeeCCCc-----EEEEEcC
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSPNDHQLLTCGQEEA-----IRRWDVN 347 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~~~dg~-----i~vwd~~ 347 (581)
.|+| |++.+..+|.|+.+|.|.+.+-. +.....++.+... |..+....+..+|++.+.|+. ++||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4554 66888899999999988887643 3555677777777 555544444478888887654 8999986
Q ss_pred CC------cEE---EEEe----cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC----CCeEEeeccCccccEEEEEEe
Q 008005 348 SG------ECL---HVYE----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD----GRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 348 ~~------~~~---~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~i~~~ 410 (581)
.- .++ +.+. ....++.+++.+.+-..+++|-.+|.|..+.=+ .+...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 42 344 2221 125678889999999999999999999988532 122222233344589999999
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe--ee-EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-cccc
Q 008005 411 DDGKRIISICREAAILLLDREANF--ER-WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKR 485 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~ 485 (581)
.+++.++.+.....|.+|.+.+.. .. .-.++....|..+++....+++++ +..+.+|+.... .+-..|. ++..
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCeE
Confidence 999885556666778888887555 22 345666788888887665466555 667999998765 4444454 5443
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.5e-05 Score=73.98 Aligned_cols=245 Identities=16% Similarity=0.143 Sum_probs=137.4
Q ss_pred ccceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg 339 (581)
.+..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+++. .....+..| ..+++++|.-|. ++|..|...|
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 344667788999999999999877 7888999999999999876 445566666 789999998865 5677778899
Q ss_pred cEEEEEcCCCcEE-EEEe--cCCCeEEEEEEe------cCCCeEEEEeCCCcEEEEeCCC--CeEEe-eccCccccEEEE
Q 008005 340 AIRRWDVNSGECL-HVYE--KTGVGLISCGWF------LDGGGIFAGMTDKSICLWDLDG--RELES-WKGQKTLRISDM 407 (581)
Q Consensus 340 ~i~vwd~~~~~~~-~~~~--~~~~~v~~~~~~------~~~~~l~sg~~dg~i~vwd~~~--~~~~~-~~~~~~~~i~~i 407 (581)
.|.|||++..+-. ..+. ....+|..++.- +.+..++.... .+..|++.. ..... ......+...++
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeee
Confidence 9999999865421 1111 122344444332 23444444433 245666532 22211 112223345566
Q ss_pred EEeeCCCEEEEEEcCC-------eEEE-EECCCCeeeE---Eec-CCc------eEEEEECCCCCEEEE-EeeCCcEEEE
Q 008005 408 AITDDGKRIISICREA-------AILL-LDREANFERW---IEE-EEV------ITSFSLSKDNKYLLV-NLINQEIHLW 468 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~---~~~-~~~------i~~~~~sp~~~~l~~-~~~d~~i~iw 468 (581)
.+.+-.+.++...+.. .+.. .|...+.... ..+ ... -..+.-.++.++++. +...+.+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 6666555555544321 0111 1111111000 000 110 011222334455544 3446789999
Q ss_pred EecCCCceeEEEeccccceeEEEeeecCCC-CcEEEEEeCCCcEEEEeCC
Q 008005 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~sgs~dg~I~iwd~~ 517 (581)
|..+. ..+.++... .++.. .+.+..+ +.+|++-. |..++||..+
T Consensus 417 D~~s~-evvQ~l~~~-epv~D--icp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 417 DPHSF-EVVQTLALS-EPVLD--ICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccchh-heeeecccC-cceee--cceeecCCcchhhhee-cceEEEEecC
Confidence 99987 677776655 33333 3333333 34555544 5567777643
No 322
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00015 Score=70.32 Aligned_cols=253 Identities=14% Similarity=0.135 Sum_probs=134.5
Q ss_pred EeCCCCCeEEEeeC-CC--cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc
Q 008005 324 SWSPNDHQLLTCGQ-EE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 324 ~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 400 (581)
+|.+||+.|+.++. || .+.+.|+.+++..+.-.+.........++++++.++.......|.-.|+++.+........
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56778876665544 54 5777788998877665544333335667788888877766778999999988776666655
Q ss_pred cccEEEEEEe--eCCCEEEEEEc----------------------CCeEEEEECCCCe-eeEEecCCceEEEEECCCCCE
Q 008005 401 TLRISDMAIT--DDGKRIISICR----------------------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 401 ~~~i~~i~~~--~~~~~l~~~~~----------------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~ 455 (581)
...+-...|. .|+..++..-. ...|...|+.++. .........+.-+.|+|....
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 5455445553 45655443321 2457778888887 556677788899999996655
Q ss_pred EEEEeeCC-----cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEe-----CCCcEEEEeCCCCceEEEe
Q 008005 456 LLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-----EDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 456 l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs-----~dg~I~iwd~~~~~~~~~~ 525 (581)
+++-+..| .-+||-+++.....+.+..+.. ...+.-=||.++|..|.--+ .+..|.-+|..+++.....
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 55544433 2377877766566666655543 34555667799998765422 2446777888887654322
Q ss_pred ccCCCCEEEEEEcCCCCcEEEEEECCC----------------cEEEecCCccccc----c-----------ccCCCceE
Q 008005 526 AGHSGSVNCVSWNPANLHMLASASDDR----------------TIRIWGLDQINMK----H-----------RDQSNGIV 574 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg----------------~I~iW~~~~~~~~----~-----------~~~~~~~~ 574 (581)
. ......+.-+++| .+++-=|.|. -|+++++..+... + .....++.
T Consensus 281 ~--~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 281 E--MPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp E--E-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred e--CCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 2 2245566678888 5665444432 4566777665532 0 11367888
Q ss_pred EecCCC
Q 008005 575 HHCNGR 580 (581)
Q Consensus 575 ~~~~G~ 580 (581)
|+|||+
T Consensus 358 FSPDgk 363 (386)
T PF14583_consen 358 FSPDGK 363 (386)
T ss_dssp E-TTSS
T ss_pred cCCCCC
Confidence 999997
No 323
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.1e-07 Score=97.66 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=176.0
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-- 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg-- 339 (581)
++...++..|+...+|++|+-+.+.|+.|+..|.|+++++.++ .......+|..+|+.+.-+.||..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCc
Confidence 4567788899999999999999999999999999999999987 34466789999999999999998877765433
Q ss_pred cEEEEEcCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee-cc---CccccEEEEEEeeCCC
Q 008005 340 AIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KG---QKTLRISDMAITDDGK 414 (581)
Q Consensus 340 ~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~---~~~~~i~~i~~~~~~~ 414 (581)
-..+|++.+ +...+.|.. -.++.|+.....-+.|+......+||+.++..... .. .....-++..|+|+..
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 467999854 445555543 34677776555556666667889999987554322 11 1112336788999887
Q ss_pred EEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008005 415 RIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
.++ .|| .+||.+... ...+..-..-..-.|+|.|..++..+ .|||+++- +.+.....-.. ....
T Consensus 1244 LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF-~lLh~VP~Ldq----c~Vt 1308 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTF-KLLHSVPSLDQ----CAVT 1308 (1516)
T ss_pred eEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHH-HHHhcCccccc----eEEE
Confidence 665 344 479988765 11111111222346899999988866 58999885 44433332221 2233
Q ss_pred ecCCCCcEEEEEeC------C-----------CcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC------
Q 008005 494 FGGFEQAFIASGSE------D-----------SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD------ 550 (581)
Q Consensus 494 ~~~~~~~~l~sgs~------d-----------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~------ 550 (581)
| ...|..++..-. | ...+-||...-..+.++.+ ..+|..++-.|.. .++...-.
T Consensus 1309 F-NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D-~~l~vIe~~~~~d~ 1385 (1516)
T KOG1832|consen 1309 F-NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTD-SFLGVIEMEDQEDM 1385 (1516)
T ss_pred e-ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCcc-ceEEEEeccChhhh
Confidence 3 334444433220 0 1223444444455566654 3567777777777 45555432
Q ss_pred ---CCcEEEecCCccc
Q 008005 551 ---DRTIRIWGLDQIN 563 (581)
Q Consensus 551 ---Dg~I~iW~~~~~~ 563 (581)
+-..++|.+...+
T Consensus 1386 dq~sT~~r~yEIGR~r 1401 (1516)
T KOG1832|consen 1386 DQFSTSARMYEIGRRR 1401 (1516)
T ss_pred hhhhhhhhhhhhcccC
Confidence 2245666664433
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00055 Score=61.45 Aligned_cols=260 Identities=12% Similarity=0.092 Sum_probs=138.2
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLIS 364 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 364 (581)
.+++.|+..+.+.--|..+++-+ . ...-+ ..|-+-+.- -|++++.|+..|.+.+.+..+|.....+..-..--..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~-W-e~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI-W-EAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE-e-ehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 36666777777777777655321 1 11111 112221111 3668999999999999999999888777654332233
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecC
Q 008005 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEE 441 (581)
Q Consensus 365 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~ 441 (581)
....+++..+..|+.|++.+..|.++....-...-......+-++.+-...|.++...|.+.-...+... .......
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~ 178 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF 178 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence 4456789999999999999999998765544333333233444556644456666666666655555442 1111122
Q ss_pred CceEE--EEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEE-------
Q 008005 442 EVITS--FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVY------- 512 (581)
Q Consensus 442 ~~i~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~------- 512 (581)
.++.+ ++. +..+..++-||.+.-+| ..+ +.+.++. ..++++.- -|...|..+.+..+.++..+.
T Consensus 179 ~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG-~qvwr~~-t~GpIf~~-Pc~s~Ps~q~i~~~~~~Cf~~~~p~~gh 251 (354)
T KOG4649|consen 179 GPIFASPLCV---GSSVIITTVDGVLTSFD-ESG-RQVWRPA-TKGPIFME-PCESRPSCQQISLENENCFCAPLPIAGH 251 (354)
T ss_pred CccccCceec---cceEEEEEeccEEEEEc-CCC-cEEEeec-CCCceecc-cccCCCcceEEEEecCCeEEEeccccce
Confidence 22221 111 33455556677776666 333 3333332 12222221 112124445555555554433
Q ss_pred -EEeCCCCceEEEeccCCCCEEEEEEc-C--CCCcEEEEEECCCcEEEecC
Q 008005 513 -IWHRYTGELVLALAGHSGSVNCVSWN-P--ANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 513 -iwd~~~~~~~~~~~~h~~~v~~l~~~-p--~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+|..++|.....+... -...+++ | ..+.+|..++.||.+.|-..
T Consensus 252 L~w~~~~g~t~~vy~~p---~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 252 LLWATQSGTTLHVYLSP---KLRFDLHSPGISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred EEEEecCCcEEEEEeCc---ccceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence 4444444332222110 0011211 1 11357888899999999833
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.5e-06 Score=85.77 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=85.4
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 276 WFLQFSHDGKYLASSS----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+-..|+|...++|+++ ..|.|.||--. +. ....-+..-| +++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GE-PQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecC-CC-CCccccccee---hhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3456889888888876 35788888432 21 1111122223 56799999888889998899999999888777
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 389 (581)
-.....|..++..+.|+++|+.++++..-|.|.+|..+
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999999999999999999999875
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=5.9e-06 Score=85.81 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=131.3
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
++..++.|+-...+..+|+.+. +..+...-....|.-+.. +++++.+|...|+|.+-|..+-+.++++..|.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccc---eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 3456777777777888888754 233333333334666654 57899999999999999999999999999999998
Q ss_pred EEEEEecCCCeEEEEeC---------CCcEEEEeCCCCeEEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEE---
Q 008005 363 ISCGWFLDGGGIFAGMT---------DKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLD--- 429 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d--- 429 (581)
.++. -.|+.|++++. |..|+|||++.-....-...+. ...-+.|.|. ...+++++..|...+.|
T Consensus 221 SDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccc
Confidence 7655 46889998875 5568999998644333222222 2244566664 45788888999999999
Q ss_pred CCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 430 REANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
+.+.. .........+..++++++++.++.+..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44443 233344455999999999999999999999999983
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=0.00014 Score=74.81 Aligned_cols=227 Identities=14% Similarity=0.138 Sum_probs=134.9
Q ss_pred EEEEeCCCeEEEEEcccCCeeeEEEEecCCC----------CCE---------------E--EEEeC---CCCCeEEEee
Q 008005 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHR----------KPV---------------F--TVSWS---PNDHQLLTCG 336 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~----------~~V---------------~--~l~~s---p~~~~l~s~~ 336 (581)
+.||+..|.++|+-+.+...+..+..|.... ..| . .+++. .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5677788888888887665554444332110 000 1 11111 1677777766
Q ss_pred C-CCcEEEEEcCCCcEEEEEecC-CCeEEEEE-------------------EecCCCeEEE-EeCCCcEEEEeCCCCeEE
Q 008005 337 Q-EEAIRRWDVNSGECLHVYEKT-GVGLISCG-------------------WFLDGGGIFA-GMTDKSICLWDLDGRELE 394 (581)
Q Consensus 337 ~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~-------------------~~~~~~~l~s-g~~dg~i~vwd~~~~~~~ 394 (581)
. +..|..-++...++-+.+... ...+..+. +.|||+.+.. .-..+.+.+.|.++.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 445655666555544433321 11222222 2334443322 222355667777665543
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEE----------------------------------------cCCeEEEEECCC--
Q 008005 395 SWKGQKTLRISDMAITDDGKRIISIC----------------------------------------REAAILLLDREA-- 432 (581)
Q Consensus 395 ~~~~~~~~~i~~i~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~-- 432 (581)
....... ....++++++|+++++.+ .++.|.++|..+
T Consensus 229 ~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 229 WQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 3322222 445677788888777665 125588888887
Q ss_pred --C-e-eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCc-----------eeEEEeccccceeEEEeeecC
Q 008005 433 --N-F-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPK-----------LVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 433 --~-~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~ 496 (581)
. . ...+........+.++|||+++++++. ++++.++|+.+... .+.......++ +...| .
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaF-D 383 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAF-D 383 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEE-C
Confidence 2 2 666777888899999999999888776 88999999987532 22233222222 33444 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC
Q 008005 497 FEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+|....+-.-|..|..||+..
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 7788888888999999999876
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=5.1e-06 Score=86.24 Aligned_cols=183 Identities=14% Similarity=0.108 Sum_probs=135.5
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEE
Q 008005 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i 407 (581)
++..++.|+....+..+|+.+.+..+........|.-+.. +++.+++|...|+|.+-|.++.+.......|.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4567888888888999999999888877766656666654 67899999999999999999988888888888788776
Q ss_pred EEeeCCCEEEEEEc---------CCeEEEEECCCCe-eeEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCce
Q 008005 408 AITDDGKRIISICR---------EAAILLLDREANF-ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 408 ~~~~~~~~l~~~~~---------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.. .|+.|++++. |..|++||++... ..-+.......-+.|.|. ...+++++..|...+.|..+...+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 55 5888988875 5568999998866 222222333355667774 467888999999999995443333
Q ss_pred -eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 477 -VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 477 -~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
...+..+......... ..+++++.++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~f-DiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAF-DISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeE-EecCCCceEEEecccCcEeeec
Confidence 3333333333333333 3488999999999999999997
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.00052 Score=69.00 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=87.9
Q ss_pred eEEEEEEec-CCCeEEEE----eCCCc----EEEEeCCCCeEEe---eccCccccEEEEEEeeCCCEEEEEEcCCeEEEE
Q 008005 361 GLISCGWFL-DGGGIFAG----MTDKS----ICLWDLDGRELES---WKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (581)
Q Consensus 361 ~v~~~~~~~-~~~~l~sg----~~dg~----i~vwd~~~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 428 (581)
...++.|+. +...+.+. +.+|. -++|++...++.. ........+.+++++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345667765 34445543 23443 3456664443322 222334479999999999999999999999999
Q ss_pred ECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE
Q 008005 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 480 (581)
|...+........-.++.++|+|+|..+++|+..|.+.+||+.-.+-....+
T Consensus 287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeec
Confidence 9998887777777788999999999999999999999999998753333333
No 330
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.40 E-value=4.3e-07 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhc
Q 008005 64 SEFIKIITRALYSLGYDKSGALLEEES 90 (581)
Q Consensus 64 ~e~~~lI~q~L~e~g~~~s~~~l~~Es 90 (581)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.9e-06 Score=81.19 Aligned_cols=248 Identities=16% Similarity=0.145 Sum_probs=162.7
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC--C-cEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCC
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--G-ECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG 390 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~ 390 (581)
.|.+.|+.+.-. -.+++.+++.||.++.|--.. | +.+..+..|-..+.+++.+.++..+.+++. |..++++|+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777776544 467999999999999997543 1 334455677788888988889988999777 99999999875
Q ss_pred CeEEeeccCccc-cEEEEEEeeC-C--CEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeC
Q 008005 391 RELESWKGQKTL-RISDMAITDD-G--KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 391 ~~~~~~~~~~~~-~i~~i~~~~~-~--~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
-..........- ...+...++. . ..-++.-.++.+.++|-.... ....-|-.+|..+.+.|-+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 433211111110 1111111221 1 122233467899999987654 2333578899999999999999999999
Q ss_pred CcEEEEEecCCCc-----eeEEEe------ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-----
Q 008005 463 QEIHLWSIESDPK-----LVSRYK------GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA----- 526 (581)
Q Consensus 463 ~~i~iwd~~~~~~-----~~~~~~------~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~----- 526 (581)
|-|.-|......+ ....++ +.........+..++|++..+.+-+.|..|++++..+|+.+..+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999999874111 111111 111111223334448999999999999999999999986654432
Q ss_pred ---------------------------cCCC-CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 527 ---------------------------GHSG-SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 527 ---------------------------~h~~-~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.|.. .-+.+.|...+ ++|+-++-=| |++.++.++...
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeecCeEE
Confidence 1221 23456788877 6777666543 788888776654
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.38 E-value=0.00071 Score=64.51 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=142.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEecCCCC----CEEEEEeCCCCCeEEEeeC--CCc
Q 008005 277 FLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGHRK----PVFTVSWSPNDHQLLTCGQ--EEA 340 (581)
Q Consensus 277 ~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~l~s~~~--dg~ 340 (581)
.+..|||++.+.+++ ..-.|.+||..+-.....+..-..|.. ....++++.|+++++.... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366899999887653 234589999976432222221111111 2234678889998877644 457
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCC-CCeEEee----c-cCccccEEEEEEeeCC
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLD-GRELESW----K-GQKTLRISDMAITDDG 413 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~-~~~~~~~----~-~~~~~~i~~i~~~~~~ 413 (581)
|.|-|+..++.+..+.... +..+ .| ....|.+-+.||.+....++ .++.... . ......+..-++...+
T Consensus 120 VtVVDl~~~kvv~ei~~PG--C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG--CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS--EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCCC--EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 8999999999888876654 2222 23 23568889999999888885 3332211 1 1111122344555666
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeEEec--------------CCceEEEEECCCCCEEEEEeeCC----------cEEEEE
Q 008005 414 KRIISICREAAILLLDREANFERWIEE--------------EEVITSFSLSKDNKYLLVNLINQ----------EIHLWS 469 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~i~~~~~sp~~~~l~~~~~d~----------~i~iwd 469 (581)
..++..+.+|.|+-.|+......+... .+...-+++++..+.|++....+ .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 777778999999999988766222211 12345578887766666643321 588888
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE-eCCCcEEEEeCCCCceEEEecc
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~ 527 (581)
+.+. +.+.++.... ....+... ..+..+|++. ..++.+.+||..+|+.+.++..
T Consensus 276 ~~t~-krv~Ri~l~~-~~~Si~Vs--qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKTH-KRVARIPLEH-PIDSIAVS--QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTT-EEEEEEEEEE-EESEEEEE--SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCC-eEEEEEeCCC-ccceEEEc--cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8887 6666666422 22233332 2233466554 4589999999999999988874
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.00036 Score=72.86 Aligned_cols=268 Identities=10% Similarity=0.075 Sum_probs=154.2
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC------CEE--EEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK------PVF--TVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~------~V~--~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
+..+..++.++.+.-.|..++... ........ .+. .+... ++..++.++.++.|.-+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVL---WRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhh---ceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 345666777888888888766322 22211111 010 11111 2267888888999999999999998877
Q ss_pred ecCCCe-----EE-EEEEecCCCeEEEEe---------CCCcEEEEeCCCCeEEeeccCc-c------------------
Q 008005 356 EKTGVG-----LI-SCGWFLDGGGIFAGM---------TDKSICLWDLDGRELESWKGQK-T------------------ 401 (581)
Q Consensus 356 ~~~~~~-----v~-~~~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~-~------------------ 401 (581)
...... +. ...+ .+..++.++ .++.+..+|..+++..-..... .
T Consensus 137 ~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 654321 11 1112 234555554 3678899999876643222111 0
Q ss_pred -ccE-EEEEEeeCCCEEEEEEcCC------------------eEEEEECCCCeeeEEecCCc--e------EEEEEC---
Q 008005 402 -LRI-SDMAITDDGKRIISICREA------------------AILLLDREANFERWIEEEEV--I------TSFSLS--- 450 (581)
Q Consensus 402 -~~i-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~--i------~~~~~s--- 450 (581)
..+ ...++.+.+..++.++.++ .|.-+|..+++..+...... . ....+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 001 1234455566777777665 79999999988555432110 0 000111
Q ss_pred -CCCC---EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE------------------eCC
Q 008005 451 -KDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG------------------SED 508 (581)
Q Consensus 451 -p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg------------------s~d 508 (581)
-++. .+++++.+|.+..+|..++ +.+-........ ...++ ..++.+ ..+
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~~~------~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVEQP------MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeeccc------cccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence 1333 5778888999999999998 444433221000 00122 222221 246
Q ss_pred CcEEEEeCCCCceEEEeccCC--------CCE--EEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 509 SQVYIWHRYTGELVLALAGHS--------GSV--NCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~h~--------~~v--~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
|.+.-.|..+|+.+-+..... .+. ..+.. .+ .+|+.++.||.|+.+|.++++...+..
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCceeeEEE
Confidence 788899999998876654321 111 11222 33 478888899999999999999887655
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3.2e-05 Score=79.64 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=127.6
Q ss_pred CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEE
Q 008005 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI 438 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~ 438 (581)
..+.|++++ ++.|+.|+.+|.|++++..+.. .....+.. . .-+|.++++++.||+|.+..+-+.. ....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~-~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSS-S------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccccc-c------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 345566664 6789999999999999987654 22222221 1 5679999999999999999988877 5557
Q ss_pred ecCCceEEEEECCC-----CCEEEEEeeCCcEEEEEecCCCceeE-EEeccccceeEEEeeecCCCCcEEEEEeCCCcEE
Q 008005 439 EEEEVITSFSLSKD-----NKYLLVNLINQEIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVY 512 (581)
Q Consensus 439 ~~~~~i~~~~~sp~-----~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~ 512 (581)
....++.+++++|+ .+.+++|+..| +.++.-.--..... .+....+.+.. +.| .|+++|-++.+| |+
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~---i~W--~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS---IKW--RGNLIAWANDDG-VK 182 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEE---EEe--cCcEEEEecCCC-cE
Confidence 78889999999997 57899999888 77765432111111 23333444333 322 678999888887 99
Q ss_pred EEeCCCCceEEEeccCCCCE------EEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 513 IWHRYTGELVLALAGHSGSV------NCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 513 iwd~~~~~~~~~~~~h~~~v------~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
|||+.+++.+..++.....+ ..+.|.++. .|+.| +..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence 99999998888776543333 467898876 34443 445899988883
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00011 Score=74.69 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=90.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
|...|.--+++..+++++.|+.-|.+++|+-..+. .......+-.+.+..+..+++..++|.|+..|.|.|+-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 34455555677788999999999999999986542 2223333455667777889999899999999999999887643
Q ss_pred EE---E--EE-ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 351 CL---H--VY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 351 ~~---~--~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
.. . .. +.|...|++++|++|+..+++|...|.|....++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 1 11 23678999999999999999999999999988876
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.25 E-value=6.4e-07 Score=89.28 Aligned_cols=242 Identities=11% Similarity=0.160 Sum_probs=149.3
Q ss_pred CCEEEEEeCCC--CCeEEEeeCCCcEEEEEcCCCcE--EEEEecCCCeEEEEEEec-CCCeEEEEe----CCCcEEEEeC
Q 008005 318 KPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGM----TDKSICLWDL 388 (581)
Q Consensus 318 ~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~sg~----~dg~i~vwd~ 388 (581)
..+.|+++.-+ ...++.|..+|.|.+-.+....- -.....+....++++|++ |.+.|++|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34667776553 34788888899999887765432 223446677889999998 556677664 3568999999
Q ss_pred CCCe--E---EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee-EEecCCceEEEEECC-CCCEEEEEee
Q 008005 389 DGRE--L---ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFER-WIEEEEVITSFSLSK-DNKYLLVNLI 461 (581)
Q Consensus 389 ~~~~--~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~i~~~~~sp-~~~~l~~~~~ 461 (581)
.++- . ..+.........+++|..+.+.+.+|.....+.++|++..... ..-....+..+.++| .++|++...
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 7641 1 1111112235668899989999999999999999999965522 222233577788888 777777655
Q ss_pred CCcEEEEE-ecCCCceeEEEecccc----ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--------ceEE---E-
Q 008005 462 NQEIHLWS-IESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------ELVL---A- 524 (581)
Q Consensus 462 d~~i~iwd-~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------~~~~---~- 524 (581)
||.|.+|| .+.-..++......+. ..+.+.+|... .|...+..-..++|+.+|+..- .... .
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~ 294 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESK 294 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEecccccCCcccccccceeeeccc
Confidence 99999999 4433233332222222 24455555543 4444444445569999986421 1111 1
Q ss_pred --eccCC--CCEEEEEEcCCCC-cEEEEEECCCcEEEecCCc
Q 008005 525 --LAGHS--GSVNCVSWNPANL-HMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 525 --~~~h~--~~v~~l~~~p~~~-~~l~s~s~Dg~I~iW~~~~ 561 (581)
++... +.|.+..||+..+ ...+++-..-++.-+++..
T Consensus 295 ~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 295 YPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 22122 5678888887652 3444555555555555543
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=2.6e-05 Score=80.29 Aligned_cols=182 Identities=13% Similarity=0.070 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 396 (581)
...++|++++ ++.|+.|+.+|.|++++.. +.. .+...|... ..+|.++++|+.||+|.+-.+-+......
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777776 6799999999999999865 333 333333322 55899999999999999998876555554
Q ss_pred ccCccccEEEEEEeeC-----CCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 397 KGQKTLRISDMAITDD-----GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
...+. ++.+++++|+ .+.+++|+.-| +.++..+-.. .......++|.++.| .|++++-+. |-.|++
T Consensus 109 ~df~r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~v 183 (846)
T KOG2066|consen 109 YDFKR-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN-DDGVKV 183 (846)
T ss_pred EecCC-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec-CCCcEE
Confidence 44443 8999999998 56889999888 7776543211 335567889999999 467777766 666899
Q ss_pred EEecCCCceeEEEecccc----ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 468 WSIESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
||+... +.+..+..... ..+... .+|.++.+ ++.| ..-+|+|..++
T Consensus 184 yd~~~~-~~l~~i~~p~~~~R~e~fpph-l~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR-QRLTNIPPPSQSVRPELFPPH-LHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred Eecccc-ceeeccCCCCCCCCcccCCCc-eEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999887 33333322211 111122 23344444 3333 44468887766
No 338
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.5e-05 Score=74.80 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCc-cCC----HHHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHH
Q 008005 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP-MHS----SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLI 136 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~-~~~----~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 136 (581)
.+.-+.|+|.-||--+||..||..|.++|.+. +-+ ..+..+++++++|+...++.-...-...-......+.|.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 57789999999999999999999999999875 211 2577888999999988888666533222122334578999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccccccc-ChhhHHHhhhccccCC
Q 008005 137 LEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELASCIISPS 182 (581)
Q Consensus 137 ~~q~~lell~~~~~~~a~~~l~~~l~pl~~-~~~~~~~l~~~l~~~~ 182 (581)
+.|+|.||++.+++.+|+.+.++.+.|... ....+.....++.++.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~ 240 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPK 240 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcc
Confidence 999999999999999999999999988764 4566666666666653
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=4.3e-07 Score=90.48 Aligned_cols=198 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred cCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEee----CCCcEEEE
Q 008005 272 SDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCG----QEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~----~dg~i~vw 344 (581)
...+.|++++.+. .+++.|..+|.|.+-.+.... ..-.....+|..+.++++|++ |.+.||.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-cccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456677776544 478899999999998876321 122345677889999999998 556666653 25679999
Q ss_pred EcCCC--cE--EEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEEEE
Q 008005 345 DVNSG--EC--LHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIIS 418 (581)
Q Consensus 345 d~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~ 418 (581)
|+.++ .+ ...|.. ......+++|..+.+.+++|.....+.++|++........ ..+..+..+.+.| .++++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhhhhcccceecCCCCCceec
Confidence 99876 21 112222 3345668899988999999999999999999743221111 1122466778888 6667665
Q ss_pred EEcCCeEEEEEC-CCCe---eeEEe----cCCceEEEEECCCCC-EEEEEe-eCCcEEEEEecC
Q 008005 419 ICREAAILLLDR-EANF---ERWIE----EEEVITSFSLSKDNK-YLLVNL-INQEIHLWSIES 472 (581)
Q Consensus 419 ~~~dg~i~i~d~-~~~~---~~~~~----~~~~i~~~~~sp~~~-~l~~~~-~d~~i~iwd~~~ 472 (581)
-. ||.|.+||. .+-+ ..... ....+..++|.|... .+++.. ..++|++||+..
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 54 999999994 3222 11111 223589999999543 344444 457899999864
No 340
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.17 E-value=2.9e-06 Score=52.19 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCc
Q 008005 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP 93 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~ 93 (581)
.+.++.++|+|||..+||..|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999999875
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=4.4e-05 Score=76.48 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=82.8
Q ss_pred EEEEEEcCC-CCEEEEE----eCCCe----EEEEEcccCCeeeEE-EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 275 VWFLQFSHD-GKYLASS----SKDQS----AIIWEVKEDGQVSLK-HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 275 V~~l~~s~~-g~~lasg----s~dg~----i~iwd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..++.||.. ...+.|. +.+|. -.+|++..+ +++.. .+.-.....|.|++++|+...|+.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 456777763 3334332 33443 356666543 22222 2223567789999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
|...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..+
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 98776433 334456678999999999999999999999999864443
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.15 E-value=0.0031 Score=60.30 Aligned_cols=266 Identities=11% Similarity=0.125 Sum_probs=152.8
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----------CCcEEEEEcCCCcEEEEEecCCC-eE
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTGV-GL 362 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~v 362 (581)
+.+.|+|.++++ .+..+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+.-... ..
T Consensus 17 ~rv~viD~d~~k---~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGK---LLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTE---EEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCc---EEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 468888887652 2222221 22334667999999887542 23599999999887776654432 11
Q ss_pred ------EEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC-C
Q 008005 363 ------ISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA-N 433 (581)
Q Consensus 363 ------~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~ 433 (581)
....++.|++++++.. -...|.+.|+..++........ .+..+--+ ..+.+.+.|.||.+..+.+.. +
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCC
Confidence 2346677888777654 3457888888887776544433 22222222 235688999999999888873 3
Q ss_pred eeeEE------ecCCc-eEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc----cc-----eeEEEeeecC
Q 008005 434 FERWI------EEEEV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK----RA-----RFVIRSCFGG 496 (581)
Q Consensus 434 ~~~~~------~~~~~-i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~~-----~~~i~~~~~~ 496 (581)
+.... ....+ +..-+++..+..++-.+.+|.|+-.|+.... +....+.... .. .+.+ ..+..
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~-~A~~~ 247 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL-IAYHA 247 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS--EEEET
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee-eeecc
Confidence 32111 11111 2233444455556667789999999987753 1222222110 00 0111 11112
Q ss_pred CCCcEEEEEe--C-----CC--cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEE-ECCCcEEEecCCcccccc
Q 008005 497 FEQAFIASGS--E-----DS--QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 497 ~~~~~l~sgs--~-----dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~ 566 (581)
+.+.+.+.-. . |+ .|.++|+.+++.+..+.. ..++.+|+.+.+..-+|++. ..++.|.+||..++++.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2333332211 1 12 588889999999998874 34688999998774466554 468999999999999876
Q ss_pred ccC
Q 008005 567 RDQ 569 (581)
Q Consensus 567 ~~~ 569 (581)
...
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 544
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0069 Score=61.05 Aligned_cols=258 Identities=11% Similarity=0.083 Sum_probs=166.0
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCe-EEEeeCCCcEEEEEcCCCcE
Q 008005 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~dg~i~vwd~~~~~~ 351 (581)
....+...+++..+.... ....+..-+.. ...... ....-...-..++.++.+.. .++...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 445677788885443332 22245555544 221111 11111133456788888874 44445568999999888877
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeC---CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEE
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i 427 (581)
........ ....++++++++.++++.. ++++.+.|..+..+.........+ ..++++|+|+.++... .++.|.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 77665444 5668999999988888766 688999998887776664333323 8999999999776665 7899999
Q ss_pred EECCCCeeeE------EecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEE-EeccccceeEEEeeecCC
Q 008005 428 LDREANFERW------IEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 428 ~d~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 497 (581)
.|........ .........+.++|++.++.+.... +.+...|..++ ..... ....... .. .....|
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~--~~-~v~~~p 262 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGA--PR-GVAVDP 262 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCC--CC-ceeECC
Confidence 9977766442 3344556789999999987776654 48888888775 33322 2222211 11 122278
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCceEEEeccCC---CCEEEEEEcCC
Q 008005 498 EQAFIASGSE-DSQVYIWHRYTGELVLALAGHS---GSVNCVSWNPA 540 (581)
Q Consensus 498 ~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~---~~v~~l~~~p~ 540 (581)
+|.++.+... .+.+.+-|..+........... ..+..+++.+.
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 9998888754 4799999988887776655432 23555555543
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00045 Score=70.03 Aligned_cols=224 Identities=13% Similarity=0.133 Sum_probs=112.0
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
..+....-....+.++|+|++++.++ ||.-.|+..... .... .+.-...+|.+.+ .+|+-...++|.|+.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEE
Confidence 33444455678999999999998854 777888874322 1111 1234567898844 566667688899963
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
--+.+....+... ..+..+-. |..|...+.+ .|.+||..++......... +|..+.|++++++++..+.+ .+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred cCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eE
Confidence 2222222223222 12333322 6666666554 8999999988877666654 48999999999999988755 66
Q ss_pred EEEECCCC------------eeeEEec-CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 426 LLLDREAN------------FERWIEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 426 ~i~d~~~~------------~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
++++.+.. ....... ...|.+.+|..+ .++..+.. .++. +..+ ....+..-..+.+.+..
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEE
Confidence 77665544 3333333 788999999765 44444433 5555 3332 11112211223333332
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.+..+.++....|+.|..+.+.
T Consensus 241 ---~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 ---LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ---ETTTTEEEEE-TT--EEEEE--
T ss_pred ---EccCCEEEEEECCCCEEEEEEC
Confidence 3344566666666666666543
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00047 Score=69.65 Aligned_cols=195 Identities=18% Similarity=0.138 Sum_probs=120.9
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC---C-CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT---D-KSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---d-g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
.+.+-|.. |.....+......+..-.|+|++..++.... . ..+.++|++++......... ..-..-+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCE
Confidence 34444544 5555666666677888899999988765432 2 35899999876654444322 24556789999998
Q ss_pred EEEEE-cCC--eEEEEECCCCee-eEEecCCceEEEEECCCCCEEEEEee-CC--cEEEEEecCCCceeEEEecccccee
Q 008005 416 IISIC-REA--AILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLI-NQ--EIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 416 l~~~~-~dg--~i~i~d~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
++.+. .|| .|+++|+.++.. +.....+.-+.-.|+|||++++..+. .| .|.+++.... ....+........
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCCCCc
Confidence 87664 444 577888888773 33333344446789999999888765 34 4666666654 3344433333211
Q ss_pred EEEeeecCCCCcEEEEEeC-CCc--EEEEeCCCCceEEEeccCCCCEEEEEEcCCCC
Q 008005 489 VIRSCFGGFEQAFIASGSE-DSQ--VYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
.-.++|+|++++..+. +|. |.+.|+.++.....+. +......-+|.|++.
T Consensus 330 ---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 330 ---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred ---CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 3345899999887764 344 7777776665433333 233334456777763
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00069 Score=69.88 Aligned_cols=216 Identities=11% Similarity=0.050 Sum_probs=128.2
Q ss_pred EcCCCCEEEEE-eCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC----cEEEEEcCCCcEEEE
Q 008005 280 FSHDGKYLASS-SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE----AIRRWDVNSGECLHV 354 (581)
Q Consensus 280 ~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg----~i~vwd~~~~~~~~~ 354 (581)
++|||+.+... -..+.+.+.|.++. +...++.-- +....++++|+|+++++++.+. ++..-+..+...+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc---eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 56677755433 34466777777654 233332222 2346778999999998887432 233333222222222
Q ss_pred EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----CeEEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEE
Q 008005 355 YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLL 428 (581)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~ 428 (581)
+.... + -.+.++|++... .++.|.+.|..+ ..+....... .....+.++|||+++++++. ++++.++
T Consensus 276 fni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 276 FNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 21110 0 023346776665 367899999987 3444433333 36889999999999887765 8899999
Q ss_pred ECCCCee-------------eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC---------CceeEEEeccccc
Q 008005 429 DREANFE-------------RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---------PKLVSRYKGHKRA 486 (581)
Q Consensus 429 d~~~~~~-------------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~ 486 (581)
|+.+... ............+|+++|+...+-.-|..|..||+... ...+.++.-|-+.
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 9987541 11222344567789999988888888999999998761 1344444444333
Q ss_pred eeEEEe--eecCCCCcEEEEEe
Q 008005 487 RFVIRS--CFGGFEQAFIASGS 506 (581)
Q Consensus 487 ~~~i~~--~~~~~~~~~l~sgs 506 (581)
...... -.-.++|++|++..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcc
Confidence 221111 11256788887764
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.13 E-value=0.0022 Score=66.98 Aligned_cols=238 Identities=15% Similarity=0.159 Sum_probs=133.3
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEee---------CCCcEEEEEcCCCcEEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCG---------QEEAIRRWDVNSGECLH 353 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~---------~dg~i~vwd~~~~~~~~ 353 (581)
..++.++.++.|.-+|.+++... -......+...-..+.-+| .+..++.++ .+|.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQV-WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEe-eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57777888999999999877432 1111122100001111122 123454443 46789999999999888
Q ss_pred EEecCCCe--------------------E-EEEEEecCCCeEEEEeCCC------------------cEEEEeCCCCeEE
Q 008005 354 VYEKTGVG--------------------L-ISCGWFLDGGGIFAGMTDK------------------SICLWDLDGRELE 394 (581)
Q Consensus 354 ~~~~~~~~--------------------v-~~~~~~~~~~~l~sg~~dg------------------~i~vwd~~~~~~~ 394 (581)
.+...... + ...++.+.+..++.++.++ .|.-+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 77542110 1 1233444567788887665 6888899877664
Q ss_pred eeccCccccE------EEEEEe----eCCC---EEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEe-
Q 008005 395 SWKGQKTLRI------SDMAIT----DDGK---RIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL- 460 (581)
Q Consensus 395 ~~~~~~~~~i------~~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~- 460 (581)
=......... ....+. -++. .+++++.+|.++.+|.++++..+..... ...++.+| ..++++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~~~ 346 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLGAF 346 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEccc
Confidence 3322111000 000111 1333 5777888999999999999855443221 12233444 3333322
Q ss_pred -----------------eCCcEEEEEecCCCceeEEEeccccc-e----eEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 461 -----------------INQEIHLWSIESDPKLVSRYKGHKRA-R----FVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 461 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+|.+.-+|+.++ +.+-........ . ...........+.+|+.++.||.|+.+|..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 3567888888877 444333322000 0 0000000012457888999999999999999
Q ss_pred CceEEEecc
Q 008005 519 GELVLALAG 527 (581)
Q Consensus 519 ~~~~~~~~~ 527 (581)
|+.+-+++.
T Consensus 426 G~~lW~~~~ 434 (488)
T cd00216 426 GKELWKFRT 434 (488)
T ss_pred CceeeEEEC
Confidence 999887764
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.12 E-value=0.0064 Score=62.40 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=137.3
Q ss_pred EEEEEeCCCCCeEEEe-eCCC----cEEEEEcCCCcEEEEE-ecCCCeEEEEEEecCCCeEEEEeCCC-----------c
Q 008005 320 VFTVSWSPNDHQLLTC-GQEE----AIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDK-----------S 382 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg-----------~ 382 (581)
+....++||++++|.+ +..| .++++|+.+|+.+... ... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999998865 3333 5999999999776532 222 222399999988887765433 3
Q ss_pred EEEEeCCCCeE---EeeccCcccc-EEEEEEeeCCCEEEEEEcC----CeEEEEECCCC-----e-eeEEecCCceE-EE
Q 008005 383 ICLWDLDGREL---ESWKGQKTLR-ISDMAITDDGKRIISICRE----AAILLLDREAN-----F-ERWIEEEEVIT-SF 447 (581)
Q Consensus 383 i~vwd~~~~~~---~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~-----~-~~~~~~~~~i~-~~ 447 (581)
|+.|.+.+... ..+....... ...+..++|+++++..... ..+++.|+... . .........+. .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888865432 2222222223 6788899999998765432 45888898875 2 33333333343 33
Q ss_pred EECCCCCEEEEEee---CCcEEEEEecCCCc--eeEEEeccccceeEEEeeecCCCCcEEEEEeCCC--cEEEEeCCCCc
Q 008005 448 SLSKDNKYLLVNLI---NQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--QVYIWHRYTGE 520 (581)
Q Consensus 448 ~~sp~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg--~I~iwd~~~~~ 520 (581)
... .+.+++.... ++.|...++..... ....+..+........+.. ..+.+++....++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 3334333322 35676677766532 2224444444322222221 2345566666666 78899988344
Q ss_pred eEEEecc-CCCCEEEEEEcCCCCcEEEEEECC---CcEEEecCCccccc
Q 008005 521 LVLALAG-HSGSVNCVSWNPANLHMLASASDD---RTIRIWGLDQINMK 565 (581)
Q Consensus 521 ~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~D---g~I~iW~~~~~~~~ 565 (581)
....+.. -.+.|..+...+++..+.++.+.- ++|.-||+.+++..
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4444433 345577777777775566665543 57888888887754
No 349
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.07 E-value=7.7e-06 Score=70.15 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhccccccc-ChhhHHHhhh
Q 008005 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELAS 176 (581)
Q Consensus 98 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l~pl~~-~~~~~~~l~~ 176 (581)
....++++|++|+++.|+..++.....-......+.|.++.|+|+|++..++..+|+...|+.+.|... ..+.+.++..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456789999999999999999876321111224688999999999999999999999999998866554 5567777777
Q ss_pred ccccCCcccccCCCCCCccchHHHHHHHHHHHhcCCCCCCCC-cchHHHHHHHHHH
Q 008005 177 CIISPSKSLTLGDSGQDTEDEKSRSKFLAKLQKLLPASVVIP-EKRLEHLVEKALD 231 (581)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~rl~~l~~q~~~ 231 (581)
++................-....|.++.+.+...+-...-+| ...|..++.+...
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~ 139 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLS 139 (145)
T ss_pred HHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 776654332000000011123567888887777554444444 4566666666543
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.06 E-value=0.0043 Score=59.69 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=137.1
Q ss_pred CCCeEEEeeCCCcEEEEEcCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee----------
Q 008005 328 NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW---------- 396 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---------- 396 (581)
.++.|+.|+.+| +.++++.. ......... ..|..+...++-+.+++-+ |+.++++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899998888 89999833 333333222 2399999998877766664 59999999864222211
Q ss_pred ----ccCccccEEEEE--EeeCCCEEEEEEcCCeEEEEECCCC------eeeEEecCCceEEEEECCCCCEEEEEeeCCc
Q 008005 397 ----KGQKTLRISDMA--ITDDGKRIISICREAAILLLDREAN------FERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 397 ----~~~~~~~i~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
.......+...+ -...+...+++.....|.+|..... ..+.......+.+++|. ++.++++. ...
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-SKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-CCc
Confidence 111122344444 2234444455555568888877653 23445667889999998 56777776 555
Q ss_pred EEEEEecCCCceeEEEecccc---------ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEE--EeccCCCCEE
Q 008005 465 IHLWSIESDPKLVSRYKGHKR---------ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL--ALAGHSGSVN 533 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h~~~v~ 533 (581)
..+.|+.++ .....+..... ....+.... -+++.+|++. |. +-+|=-..|+... .+. -...+.
T Consensus 159 f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 159 FYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQ-WSSAPQ 232 (275)
T ss_pred eEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cc-eEEEEcCCCCcCcccEEE-cCCchh
Confidence 888898864 33222211111 011122222 2345666653 22 3333223454433 222 234556
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEecCCccccccccCCCceEEecCC
Q 008005 534 CVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNG 579 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G 579 (581)
++++.. + +|+..+. +.|.||++.++++.+.....++...+.|
T Consensus 233 ~~~~~~--p-yli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 233 SVAYSS--P-YLIAFSS-NSIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred EEEEEC--C-EEEEECC-CEEEEEECcCCcEEEEEECCCEEEEecC
Confidence 666643 3 5555555 5599999999999998888877776665
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00024 Score=73.53 Aligned_cols=254 Identities=15% Similarity=0.148 Sum_probs=145.5
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
|++...+.+.+|-+..-+... -+..-| +++++|+|..-.|+.|-.-|.+.+|...+. +.......|..
T Consensus 35 fS~er~GSVtIfadtGEPqr~------Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a 102 (1416)
T KOG3617|consen 35 FSPERGGSVTIFADTGEPQRD------VTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPA 102 (1416)
T ss_pred ecCCCCceEEEEecCCCCCcc------ccccee---hhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCC
Confidence 455566677777554321111 111112 456999999989999999999999998754 33445567999
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-Cc-----------------EEEEEec---------------CCCeEE-E
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GE-----------------CLHVYEK---------------TGVGLI-S 364 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~-----------------~~~~~~~---------------~~~~v~-~ 364 (581)
+|..+.||++|..++++..-|.+.+|...- |+ +...+.. ....+- -
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~ 182 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEP 182 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhccc
Confidence 999999999999999999999999998652 11 0000000 000000 0
Q ss_pred EEE-------------ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC-
Q 008005 365 CGW-------------FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR- 430 (581)
Q Consensus 365 ~~~-------------~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~- 430 (581)
.-| .|+|..++.++.+|+|+..|-.+........... ..+-|.+....+++...+-++.++-.
T Consensus 183 fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~ 259 (1416)
T KOG3617|consen 183 FNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVL 259 (1416)
T ss_pred ccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEec
Confidence 001 2456778888888988888865543322221110 01111111111111111111111110
Q ss_pred -----------------------------CC----CeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC----
Q 008005 431 -----------------------------EA----NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---- 473 (581)
Q Consensus 431 -----------------------------~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---- 473 (581)
.. ....-......+++++++..+..+..|...|.+.+|--...
T Consensus 260 ~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g 339 (1416)
T KOG3617|consen 260 AKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQG 339 (1416)
T ss_pred CCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccC
Confidence 00 00111234567999999999999999999999999964331
Q ss_pred -C-ceeEEEeccccceeEEEeeecCCCCcEEEEEeC
Q 008005 474 -P-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 474 -~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
+ .-...+.+.......|+.+-|+|-.+.++.-+.
T Consensus 340 ~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 340 DPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred CCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 1 223344555555555777777775555544443
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.017 Score=58.65 Aligned_cols=260 Identities=13% Similarity=0.195 Sum_probs=132.5
Q ss_pred EEEcCCCCEEEEEeCC----------C-eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 278 LQFSHDGKYLASSSKD----------Q-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 278 l~~s~~g~~lasgs~d----------g-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
++.+|.|..+|....+ . .|.||+... ..+ ..+.-..+.|.++.|+.+. .|++...||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll---~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLL---SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEe---EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeC
Confidence 4555666656555433 1 588888763 222 2222222789999998754 5666778999999998
Q ss_pred CCCcEEEEEe--cCCCeEEEE-----EEecCCCeEEEEeCCCcEEEEeCCCCeEE--eeccCc-------c-ccEEE-EE
Q 008005 347 NSGECLHVYE--KTGVGLISC-----GWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQK-------T-LRISD-MA 408 (581)
Q Consensus 347 ~~~~~~~~~~--~~~~~v~~~-----~~~~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~-------~-~~i~~-i~ 408 (581)
. |+....+. .....|..+ .+..+| ++.-..++.+.+.+--..... ...... . ..... ..
T Consensus 109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 F-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred C-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6 43311111 111122222 222233 333344555555433221111 000000 0 00111 23
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008005 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
++.+....+....++.+.+.+...... ....+++..+++||++++++.-..+|.+.+.+.+-. +....+......
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~--i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~-- 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ--IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKS-- 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc--ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCC--
Confidence 444555555556666666554332211 334568999999999999999999999988876544 334444333110
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccccc
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
.| ..++-+++|..+..|. ..+..+...... +.|.-+++ .++..-.|| |||..-+..+..++.
T Consensus 261 -------~p--~~~~WCG~dav~l~~~----~~l~lvg~~~~~---~~~~~~~~-~~l~~E~DG-~riit~~~~~~l~~V 322 (410)
T PF04841_consen 261 -------PP--KQMAWCGNDAVVLSWE----DELLLVGPDGDS---ISFWYDGP-VILVSEIDG-VRIITSTSHEFLQRV 322 (410)
T ss_pred -------CC--cEEEEECCCcEEEEeC----CEEEEECCCCCc---eEEeccCc-eEEeccCCc-eEEEeCCceEEEEEC
Confidence 11 2334444555555562 122222222222 34444442 444444555 777777666655443
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00048 Score=69.60 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=124.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEe---CC-CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCC
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSS---KD-QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg 339 (581)
.+.+..-...+..-+|+|+++.++..+ .. ..+.++++.++... .+..+.++. ..-+|+|||+.|+.+. .||
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~---~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNN---GAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCcc---CCccCCCCCCEEEEEECCCC
Confidence 344444556677788999998766542 22 46899999876543 333344444 4568999998877654 455
Q ss_pred c--EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCC
Q 008005 340 A--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 340 ~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
. |.+.|+.++...+ +....+.-..-.|+|||+.++..+.. | .|.+++.++............ -..-.|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-NSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC-CcCccCCCCCC
Confidence 4 6666877766433 54444444477899999998877653 3 577788887766444433322 22778999999
Q ss_pred EEEEEEcC-Ce--EEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 415 RIISICRE-AA--ILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 415 ~l~~~~~d-g~--i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+++..+.. |. |.+.|+.++. .+..........-.|.++++.+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 99988753 33 6666666555 455555555566777888877766544
No 354
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.03 E-value=3.1e-06 Score=59.52 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCH
Q 008005 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKV 150 (581)
Q Consensus 98 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~lell~~~~~ 150 (581)
.+..++++|++|+|++|+..++............+.|.+++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 57889999999999999999988765443344578999999999999987654
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0036 Score=63.59 Aligned_cols=226 Identities=13% Similarity=0.090 Sum_probs=108.6
Q ss_pred cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE-eCCCCe
Q 008005 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW-DLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw-d~~~~~ 392 (581)
.........+.++|+|++++++ .||.-.|+.....+.... +.....+|.+ .+.+++-...+.|.++ +++...
T Consensus 29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCcccc
Confidence 3344557899999999998885 467788887443333221 2334678888 4567777778899996 443222
Q ss_pred EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
........ .+..+-. |..|...+. +.|.+||+.++.....-.-..|..+.|++++.+++..+ +..+.+++...
T Consensus 102 ~k~i~~~~--~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t-~~~i~il~~~~ 174 (443)
T PF04053_consen 102 VKSIKLPF--SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT-KDSIYILKYNL 174 (443)
T ss_dssp T-----SS---EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--S-SEEEEEE-H
T ss_pred ceEEcCCc--ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-CCeEEEEEecc
Confidence 11222211 2444433 766666554 48999999998844333344589999999999999987 55777776543
Q ss_pred C----------CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCC
Q 008005 473 D----------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 473 ~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
. ............. +....|..+ -++++... .|+.+ -.|+. ..+..-..++.=+.+.|..
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~---IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~- 244 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISER---IKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHLDKPLYLLGYLPKE- 244 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S-----SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-SS--EEEEEETTT-
T ss_pred hhcccccccCchhceEEEEEecce---eEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEcCCceEEEEEEccC-
Confidence 1 0012222110111 112222212 22222221 34332 12221 1222224456666777766
Q ss_pred cEEEEEECCCcEEEecCCccc
Q 008005 543 HMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
..+.....|+.|..+.++...
T Consensus 245 ~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp TEEEEE-TT--EEEEE--HHH
T ss_pred CEEEEEECCCCEEEEEECHHH
Confidence 578888888899888776543
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0065 Score=56.48 Aligned_cols=201 Identities=11% Similarity=0.105 Sum_probs=114.0
Q ss_pred EEecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+.+-...+..++|.|+.+.|+ +....+.|..++.++..+.............+++..++.++++.-.++.+.++++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3444556799999999866554 556677888889876666555544445789999998887777666789999998843
Q ss_pred Ce-----e--eEE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC--CCceeEE--Eeccc---cceeEEEe
Q 008005 433 NF-----E--RWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES--DPKLVSR--YKGHK---RARFVIRS 492 (581)
Q Consensus 433 ~~-----~--~~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~~~~~--~~~~~---~~~~~i~~ 492 (581)
.. . ... ..+..+-.++|+|.++.|+++-...-..+|.+.. ....... ..... .....++.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 22 1 111 2345689999999988888888777777777765 1111111 11111 11112222
Q ss_pred e-ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC---------CCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 493 C-FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS---------GSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 493 ~-~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+ +....+.+++....+..|..+| .+|+++..+.-.. ...-+|+|.++| . |...++-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-C-EEEEcCCceEEEe
Confidence 2 3345667788888888999999 6788766554222 246789999998 4 4445565554443
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0012 Score=66.06 Aligned_cols=258 Identities=8% Similarity=0.055 Sum_probs=132.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee----------------------------------------eEEEEe
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------------------------------------SLKHRL 313 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 313 (581)
.|+++.|+++..-|+.|...|.|.||.+..++.. .....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999987543211 122223
Q ss_pred cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe--c------CCCeEEEEEEec-----CC---CeEEEE
Q 008005 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE--K------TGVGLISCGWFL-----DG---GGIFAG 377 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~sg 377 (581)
....++|++++.| |=.+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4457889999997 45599999999999999998777766532 1 234577787763 22 358889
Q ss_pred eCCCcEEEEeCCCCeEEeeccCccccEEEEEEe--eCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCE
Q 008005 378 MTDKSICLWDLDGRELESWKGQKTLRISDMAIT--DDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 378 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~ 455 (581)
+..|.+.+|.+.-. -. ....+..+... .++.. ..|..++..++....... ..+..+.-...-.-
T Consensus 162 Tn~G~v~~fkIlp~----~~--g~f~v~~~~~~~~~~~~i-------~~I~~i~~~~G~~a~At~-~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 162 TNSGNVLTFKILPS----SN--GRFSVQFAGATTNHDSPI-------LSIIPINADTGESALATI-SAMQGLSKGISIPG 227 (395)
T ss_dssp ETTSEEEEEEEEE-----GG--G-EEEEEEEEE--SS-----------EEEEEETTT--B-B-BH-HHHHGGGGT----E
T ss_pred eCCCCEEEEEEecC----CC--CceEEEEeeccccCCCce-------EEEEEEECCCCCcccCch-hHhhccccCCCcCc
Confidence 99999999876310 00 00011111111 11111 122233433333110000 00000000001122
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec----CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC--
Q 008005 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG----GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-- 529 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-- 529 (581)
+++...+..++++...+.....+.+ ........+++. ...+..|++-..+|.|++|.+..-+.+..+.-+.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred EEEEEcccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 4444558899999988763333334 221122222222 2356788999999999999999988887776532
Q ss_pred --CCEEEEEEcCCCCcEEEEEEC
Q 008005 530 --GSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 530 --~~v~~l~~~p~~~~~l~s~s~ 550 (581)
..+...+++++| ..++-.|.
T Consensus 305 d~~~~~~ssis~~G-di~~~~gp 326 (395)
T PF08596_consen 305 DSRRLSSSSISRNG-DIFYWTGP 326 (395)
T ss_dssp -HHHHTT-EE-TTS--EEEE-SS
T ss_pred ccccccccEECCCC-CEEEEeCc
Confidence 234456678888 45555543
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0028 Score=58.87 Aligned_cols=199 Identities=14% Similarity=0.152 Sum_probs=111.0
Q ss_pred eecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
+.+.+-.+.+..++|+|+.+ ++++....+.|...+.+ +++.....+.+ .+..-.|++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 35666677799999999755 56666677777777764 33333333444 3457888998888777776678999999
Q ss_pred EcCCCc------EEEEEe-----cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC----CeEEe-----e--ccCccc
Q 008005 345 DVNSGE------CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELES-----W--KGQKTL 402 (581)
Q Consensus 345 d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~~~~~-----~--~~~~~~ 402 (581)
++.... ....+. .+...+-.++|.+.++.|+++-...-..+|.++. ..... + ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 112222 2356789999999988888887776666666543 11110 0 112234
Q ss_pred cEEEEEEeeCCCE-EEEEEcCCeEEEEECCCCeeeEEecC----------CceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 403 RISDMAITDDGKR-IISICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 403 ~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.+.+++++|.... ++....+..|..+|............ ...-.++++++|++.++ +..+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 6889999987654 45555677888888665543333322 24778999999865554 445544443
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.0006 Score=69.64 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=100.4
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE-ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-- 392 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-- 392 (581)
|...|.--+++..+++++.|+..|.+.+|+-..+.....- .+....+..++.+++..++++|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 4445666666778899999999999999997766543322 2345566677788888889999999999999885422
Q ss_pred -E---EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEEC
Q 008005 393 -L---ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLS 450 (581)
Q Consensus 393 -~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s 450 (581)
. ......|...|++++|++++..+++|...|.|....+.... .......+.|..+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 11222346789999999999999999999999998887721 4555667778777765
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.022 Score=59.86 Aligned_cols=279 Identities=12% Similarity=0.090 Sum_probs=148.6
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC--CE-------EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK--PV-------FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~--~V-------~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
+..++.++.++.|.-.|..++..+ -......... .+ ..+++ .+..++.++.|+.+.-.|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~l-W~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKEL-WKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCcee-eEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 345666667777888887766322 1111111100 00 01122 234677788899999999999998876
Q ss_pred EecCCC----eEEEEEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccC-c-----------------------
Q 008005 355 YEKTGV----GLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQ-K----------------------- 400 (581)
Q Consensus 355 ~~~~~~----~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~-~----------------------- 400 (581)
...... .+.+.-.. .+..++++.. +|.|..+|.++++..=.... .
T Consensus 146 ~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 653211 11111001 1335555543 68899999877654321110 0
Q ss_pred -------cccE-EEEEEeeCCCEEEEEEcC-----C-----------eEEEEECCCCeeeEE----ecC-------CceE
Q 008005 401 -------TLRI-SDMAITDDGKRIISICRE-----A-----------AILLLDREANFERWI----EEE-------EVIT 445 (581)
Q Consensus 401 -------~~~i-~~i~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~----~~~-------~~i~ 445 (581)
...+ ..+++.+....++.+..+ + .|.-.|.++++..+. .|. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0011 134566666666665522 1 677788888873332 221 1122
Q ss_pred EEEECCCCC---EEEEEeeCCcEEEEEecCCCceeEE--------Ee---c-ccc-c--------------eeEEE----
Q 008005 446 SFSLSKDNK---YLLVNLINQEIHLWSIESDPKLVSR--------YK---G-HKR-A--------------RFVIR---- 491 (581)
Q Consensus 446 ~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~--------~~---~-~~~-~--------------~~~i~---- 491 (581)
-+.+..+|+ .++.+..+|.+++.|..++ +++.. +. . ... . ...+.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~ 383 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF 383 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCC-ceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence 233334665 7788999999999999887 44311 10 0 000 0 00000
Q ss_pred -------eeecCCCCcEEEEEeC---------------------------------CCcEEEEeCCCCceEEEeccCCCC
Q 008005 492 -------SCFGGFEQAFIASGSE---------------------------------DSQVYIWHRYTGELVLALAGHSGS 531 (581)
Q Consensus 492 -------~~~~~~~~~~l~sgs~---------------------------------dg~I~iwd~~~~~~~~~~~~h~~~ 531 (581)
...+.|...+++.... -|.|.-+|+.+|+..-........
T Consensus 384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~ 463 (527)
T TIGR03075 384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL 463 (527)
T ss_pred cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence 0111233333332222 245777888888777665432211
Q ss_pred EEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 532 VNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+... -.+ .+++.++.||.++.+|.++++...+..
T Consensus 464 ~~~~l~-t~g-~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 464 WGGVLA-TAG-DLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCcceE-ECC-cEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 112111 133 477778889999999999999887655
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.0018 Score=64.77 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=122.6
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC--------
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-------- 390 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-------- 390 (581)
.|+.+.|+++...|+++...|.|.||.+...+... ......-....+.+ + ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 48899999999999999999999999876543321 00000111111111 0 00111222333321
Q ss_pred -CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe----------cCCceEEEEECC-----CC-
Q 008005 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE----------EEEVITSFSLSK-----DN- 453 (581)
Q Consensus 391 -~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~i~~~~~sp-----~~- 453 (581)
-..........++|++++.+.-| ++++|..+|.+.+.|++.....+.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 11233334446789999997555 8999999999999999988733332 223477777752 33
Q ss_pred --CEEEEEeeCCcEEEEEecC--CCceeEEEe----ccccceeEEEeeecCC------------------CCcEEEEEeC
Q 008005 454 --KYLLVNLINQEIHLWSIES--DPKLVSRYK----GHKRARFVIRSCFGGF------------------EQAFIASGSE 507 (581)
Q Consensus 454 --~~l~~~~~d~~i~iwd~~~--~~~~~~~~~----~~~~~~~~i~~~~~~~------------------~~~~l~sgs~ 507 (581)
-.+++|+..|.+.+|.+.- +......+. .+...+..+....... .-.-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4788999999999998752 111111111 2223333332221000 1112344445
Q ss_pred CCcEEEEeCCCCceEEEeccCCCCEEEEEEc-----CCCCcEEEEEECCCcEEEecCCcccccc
Q 008005 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSWN-----PANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~-----p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+..++++...+.+.........-.+..+.+- ..+ ..|++-..+|.|+++.+...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEE
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhh
Confidence 6779999988887766555322233344452 234 688899999999999998776553
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.93 E-value=0.015 Score=55.81 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=124.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE------
Q 008005 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY------ 355 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 355 (581)
..++.|+.|..+| +.+++....... .... +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3577899999888 899998322221 1211 223399999999777776665 499999998764333210
Q ss_pred --------ecCCCeEEEEE--EecCCCeEEEEeCCCcEEEEeCCCC------eEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 356 --------EKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGR------ELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 356 --------~~~~~~v~~~~--~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
......+...+ -...+...++......|.+|..... ....+... ..+.+++|. ++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 01122333333 1123444444555568888877542 22232222 378888888 5567766
Q ss_pred EcCCeEEEEECCCCeee-EEec-------------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 420 CREAAILLLDREANFER-WIEE-------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~~~-~~~~-------------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
.. ....+.|+.++... .... ..++..+... ++.+|++ . +..-.+.|..+.......+.-...
T Consensus 155 ~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCc
Confidence 64 44788888866522 2211 1123333333 4455554 2 344444455442111122222222
Q ss_pred ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC
Q 008005 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 528 (581)
+ ....+ ...||++.+.++ |.||++.+++++..+...
T Consensus 231 p---~~~~~---~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 P---QSVAY---SSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred h---hEEEE---ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 2 11222 224777766654 999999999998888754
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.93 E-value=0.019 Score=58.32 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=114.0
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC---ccccEEE-----EEEee
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---KTLRISD-----MAITD 411 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~-----i~~~~ 411 (581)
.|.||+. .|+.+..+.-..+.+.++.|..+ ..|++...||.++++|+.+.. .+... ....|.. ..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 4888874 46666666655588999999874 567778899999999997655 11111 1112222 22333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--eeEE-ecCC---------ceE-EEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008005 412 DGKRIISICREAAILLLDREANF--ERWI-EEEE---------VIT-SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~---------~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
+| ++....++.+++..--... .... .... ... ...++.+....+....++.+.+.+-... .
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-~--- 211 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-K--- 211 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-c---
Confidence 44 4444455555554332221 0110 0000 000 1234444444555455555554443221 0
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-CCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.+.. .+. +..+..||+++++|.-..+|.+.+....-.+.+..+... ......+.|.-++ .+++.- ...|.+.
T Consensus 212 ~i~~-~~~---i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~--~~~l~lv 284 (410)
T PF04841_consen 212 QIDS-DGP---IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSW--EDELLLV 284 (410)
T ss_pred cccC-CCC---eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEe--CCEEEEE
Confidence 1111 112 333334999999999999999999987666666666544 4567788888776 333333 4456666
Q ss_pred cCCccc
Q 008005 558 GLDQIN 563 (581)
Q Consensus 558 ~~~~~~ 563 (581)
......
T Consensus 285 g~~~~~ 290 (410)
T PF04841_consen 285 GPDGDS 290 (410)
T ss_pred CCCCCc
Confidence 544433
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.91 E-value=0.017 Score=62.15 Aligned_cols=194 Identities=15% Similarity=0.179 Sum_probs=121.8
Q ss_pred ccCcEEEEEEcC--CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--------CCCeEEEe-eCCC
Q 008005 271 HSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--------NDHQLLTC-GQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--------~~~~l~s~-~~dg 339 (581)
+.+...+++... |..+++=| ..|-|+.....+.+.....+..-.. ...-.|.| +.++|+.- ....
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg---~~igVFk~~~~~~l~f~t~i~~i~~-~~g~~~~P~k~mL~~~d~~mil~~~~~~~ 504 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRG---SKIGVFKNTDDDGLEFSTAISNIST-PKGKNFTPKKAMLHDQDRNMILLDPNNPN 504 (794)
T ss_pred CCCccceeEeeeccCceEEECC---CcEeEEECCCCCceeeeEEeccccc-CCCcccCcchhhhhccccceEeecCCCCC
Confidence 345566666663 44444433 2488887764333332222211100 01112333 33444443 3457
Q ss_pred cEEEEEcCCCcEEEEEecCCCe-EEEEEEec-----CCCeEEEEeCCCcEEEEeCCCC--eEEee---ccCccccEEEEE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVG-LISCGWFL-----DGGGIFAGMTDKSICLWDLDGR--ELESW---KGQKTLRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~sg~~dg~i~vwd~~~~--~~~~~---~~~~~~~i~~i~ 408 (581)
.++-.|+++|+.+.....+... |..++-.. +....+.|-.++.+..||.+-. ++... ........+|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 8999999999999999888644 54443211 2345678889999999999742 22211 112234678888
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 409 ITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
-+.+| +||+|+.+|.|++||.-... ..+.....+|..+..+.||+++++.+ +..+.+++.
T Consensus 585 Tt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 585 TTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 87777 79999999999999954433 33345688999999999999999876 667777775
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.007 Score=60.99 Aligned_cols=201 Identities=9% Similarity=0.091 Sum_probs=141.5
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC---CCcEEEEEcCCCc
Q 008005 275 VWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~ 350 (581)
-..+++++.+. ..++...++.|.+.|......... ...+. ....++++|+++.+..+.. ++++.+.|..+++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~--~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS--IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE--eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 34678888887 444555568899999765432211 11222 4678999999988777665 6889999999998
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEe-e---ccCccccEEEEEEeeCCCEEEEEEcC---
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELES-W---KGQKTLRISDMAITDDGKRIISICRE--- 422 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~~~~~d--- 422 (581)
..........+ ..+++.|++..++... .++.|.+.|..+..+.. . ..........+.++++|+.+.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 88886554444 8899999999777666 68899999987766653 1 01112246778999999977776554
Q ss_pred CeEEEEECCCCeeeEE--ecCC-ceEEEEECCCCCEEEEEeeC-CcEEEEEecCCCceeEEEe
Q 008005 423 AAILLLDREANFERWI--EEEE-VITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~--~~~~-~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~ 481 (581)
+.+...|..++..... .... ....+..+|+|+++.+.... +.+.+.|..+. .......
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~ 292 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGP 292 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeec
Confidence 5899999988773222 2222 56788999999999988554 78888888776 4444443
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.89 E-value=0.0083 Score=59.13 Aligned_cols=213 Identities=18% Similarity=0.221 Sum_probs=124.8
Q ss_pred CcEEEEEcCCCcEEEEEecC-CCeEEEEEEec---C----CCeEEEEeC----------CCcEEEEeCCCC-----eEEe
Q 008005 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWFL---D----GGGIFAGMT----------DKSICLWDLDGR-----ELES 395 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~---~----~~~l~sg~~----------dg~i~vwd~~~~-----~~~~ 395 (581)
..|++.|..+.+.+..+.-. ...+.+++... + ..++++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888888777666543 33444444322 1 456776653 288999999773 3332
Q ss_pred e-ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e---eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 396 W-KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E---RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 396 ~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
. .....++|.+++-- ++ .+++ +..+.|.+|++.... . ........++++.. .++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEE
Confidence 2 12234578888776 33 4443 345889999987766 2 22223345555555 4669999999999998877
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-------C--ceEEEeccC-CCCEEEE---EE
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-------G--ELVLALAGH-SGSVNCV---SW 537 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-------~--~~~~~~~~h-~~~v~~l---~~ 537 (581)
+.....+..+.......+...+.+.. +++.++++..+|.+.++.... + +......-| ...|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 65434455555444555556565542 335999999999999998652 2 222222222 4567877 55
Q ss_pred cC--CCCc-----EEEEEECCCcEEEe
Q 008005 538 NP--ANLH-----MLASASDDRTIRIW 557 (581)
Q Consensus 538 ~p--~~~~-----~l~s~s~Dg~I~iW 557 (581)
.| .+.. .++.++.+|.|...
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 55 2212 47888899998843
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.86 E-value=0.059 Score=57.86 Aligned_cols=282 Identities=15% Similarity=0.157 Sum_probs=155.4
Q ss_pred cCcEEEEEEcCCC------CEEEEEeCCCeEEEEEcccCCeeeEEEEecC--CCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 272 SDEVWFLQFSHDG------KYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 272 ~~~V~~l~~s~~g------~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...|.|+.++|-| ++++.|..+..+.+--...+........+.+ -...|....|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4689999999842 2788888777666554443332222222222 2234555666667889999999999876
Q ss_pred EEc--CCCcE--------------EEEEecC-CCeEEEE------EEecCCCeEEE-----------------------E
Q 008005 344 WDV--NSGEC--------------LHVYEKT-GVGLISC------GWFLDGGGIFA-----------------------G 377 (581)
Q Consensus 344 wd~--~~~~~--------------~~~~~~~-~~~v~~~------~~~~~~~~l~s-----------------------g 377 (581)
|.+ .+|.. ++++... ...+.++ .|+.+++.+++ .
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 644 44432 1122111 1111111 11112211111 1
Q ss_pred eCCCcEEEEeCCC-C--eEEeeccCccccEEEEEEeeCCCEEEEEEcC--------------CeEEEEECCCCeeeE---
Q 008005 378 MTDKSICLWDLDG-R--ELESWKGQKTLRISDMAITDDGKRIISICRE--------------AAILLLDREANFERW--- 437 (581)
Q Consensus 378 ~~dg~i~vwd~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~--- 437 (581)
...+.+++.-++. + ...+ ... ......+++.+....+.+.+.. ..++++|.++.....
T Consensus 690 ~~~~~l~i~tid~iqkl~irt-vpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he 767 (1096)
T KOG1897|consen 690 ANGGALTIGTIDEIQKLHIRT-VPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE 767 (1096)
T ss_pred ecCCceEEEEecchhhcceee-ecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecc
Confidence 1223344433321 1 1111 111 1245566666644444433321 246677766655111
Q ss_pred Eec---CCceEEEEECCC-CCEEEEEee----------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE
Q 008005 438 IEE---EEVITSFSLSKD-NKYLLVNLI----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 438 ~~~---~~~i~~~~~sp~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
... ...+.++.|..| +.++++|+. .|.|.+|.+... ..++....+.-.......+ -.+|+++|
T Consensus 768 f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~--~fngkllA 844 (1096)
T KOG1897|consen 768 FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALV--EFNGKLLA 844 (1096)
T ss_pred ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehh--hhCCeEEE
Confidence 111 223555568777 778888864 478888888773 3444444333332233333 34677776
Q ss_pred EEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 504 SGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+- +..|++|+..+.+.++.-..|..++..+...-.+ ..++.|..=+.|.+-..+.
T Consensus 845 ~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ec--CcEEEEEEccccceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEec
Confidence 54 4579999999887887777888899999988888 6889988877777655443
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.052 Score=55.73 Aligned_cols=240 Identities=18% Similarity=0.223 Sum_probs=126.7
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC---------
Q 008005 274 EVWFLQFSHDGKYLASS-SKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--------- 339 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasg-s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--------- 339 (581)
.+...++||||+++|.+ +.. ..++++|+.++..+ ...+.... ...+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--CCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 44467899999988865 333 35999999876322 12222211 12399999988876665433
Q ss_pred --cEEEEEcCCCcE--EEEEecCCCe--EEEEEEecCCCeEEEEeCC----CcEEEEeCCCC-----eEEeeccCccccE
Q 008005 340 --AIRRWDVNSGEC--LHVYEKTGVG--LISCGWFLDGGGIFAGMTD----KSICLWDLDGR-----ELESWKGQKTLRI 404 (581)
Q Consensus 340 --~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~-----~~~~~~~~~~~~i 404 (581)
.|+.|.+.++.. ...+...... ...+..++|+++++..... ..+.+.|+... .............
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 378888877642 3445444332 5678889999998764432 35788888764 3444443333223
Q ss_pred EEEEEeeCCCEEEEEE---cCCeEEEEECCCCe-----eeEEecCCceEEEEECCCCCEEEEEee-CC--cEEEEEecCC
Q 008005 405 SDMAITDDGKRIISIC---REAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQ--EIHLWSIESD 473 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~ 473 (581)
..+... .+.+++... ..+.|...++.... .....+...+.-..+...+.+|++... ++ .|+++++..+
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 333333 333333332 24678888887765 244455553333333344556665544 43 5788888722
Q ss_pred CceeEEEeccccc-eeEEEeeecCCCCc-EEEEEeC---CCcEEEEeCCCCceE
Q 008005 474 PKLVSRYKGHKRA-RFVIRSCFGGFEQA-FIASGSE---DSQVYIWHRYTGELV 522 (581)
Q Consensus 474 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~sgs~---dg~I~iwd~~~~~~~ 522 (581)
............ +..+. ..+++. +.++.+. -++++.||+.+++..
T Consensus 360 -~~~~~~~~p~~g~v~~~~---~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVS---GDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -EEEEEEESSSSSEEEEEE---S-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -cEEeeecCCcceEEeccC---CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 333333332222 12221 123333 2222222 347888888887653
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.83 E-value=0.03 Score=59.32 Aligned_cols=228 Identities=16% Similarity=0.124 Sum_probs=123.3
Q ss_pred CCCCEEEEEeCC------CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-C-----cEEEEEcCCC
Q 008005 282 HDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E-----AIRRWDVNSG 349 (581)
Q Consensus 282 ~~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g-----~i~vwd~~~~ 349 (581)
..+.+++.||.+ ..+..+|..++ .+.....+... ..-.+++.. ++...++||.| | ++..||..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 345567777766 35778888754 33333333322 223344444 46788889988 3 5778888877
Q ss_pred cEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 350 ECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 350 ~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
+-...-. ...... +++ .-+|...++|+.|| +|-.||..+.+...........-..-...-+|...++|+.+
T Consensus 360 ~W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred ceeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 6433111 111111 111 22677888899887 47788887776655544433233333334567777777754
Q ss_pred ------CeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeCC-----cEEEEEecCCCceeEEEecccccee
Q 008005 423 ------AAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 423 ------g~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
.++..||..+..-.... ....-..++. -++.+.++|+.++ +|..||..+.. - ...........
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W-~~v~~m~~~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ-W-TMVAPMTSPRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc-e-eEcccCccccc
Confidence 35788898887622211 1111111222 2667777787776 36778877642 1 11111111111
Q ss_pred EEEeeecCCCCcEEEEEeCCC-----cEEEEeCCCC
Q 008005 489 VIRSCFGGFEQAFIASGSEDS-----QVYIWHRYTG 519 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg-----~I~iwd~~~~ 519 (581)
...++ .-++...++|+.|| +|..||..+.
T Consensus 515 ~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 515 AVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111 23567778888776 4555655444
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.81 E-value=0.035 Score=55.53 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC---------------Cc-EEEEE
Q 008005 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE---------------QA-FIASG 505 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~-~l~sg 505 (581)
..+.+++.+|++++.++...-|.|.++|+.+. ..++.++|........-......+ .. +++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 44788999999999888877899999999987 778888877664332222211111 11 23445
Q ss_pred eCCCcEEEEeCCCCceEEEecc
Q 008005 506 SEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~~~~ 527 (581)
-.-|.|.||.+++|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5678899999998888776653
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.023 Score=54.88 Aligned_cols=220 Identities=16% Similarity=0.202 Sum_probs=125.8
Q ss_pred EeCCCCCeEE-EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-Eeec----
Q 008005 324 SWSPNDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWK---- 397 (581)
Q Consensus 324 ~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~---- 397 (581)
.|.++...|+ +--..+.|.-|+..+++. ..+.... .+.+......+..|+++.. .+.+++.+.+.. ....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4667666444 444567888888876653 2332222 3344444444555555433 355556544333 2211
Q ss_pred cCccccEEEEEEeeCCCEEEEEEc-----------CCeEEEEECCCCeeeEEec-CCceEEEEECCCCCEEEEEee-CCc
Q 008005 398 GQKTLRISDMAITDDGKRIISICR-----------EAAILLLDREANFERWIEE-EEVITSFSLSKDNKYLLVNLI-NQE 464 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~-d~~ 464 (581)
.......++..+.|+|.+.+..-. -|.|+.+|......+.... -...+.++||||++.|+++.. .+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 222346788899999876665433 1456666654444443333 556678999999988887765 478
Q ss_pred EEEEEecC--C---Cce-eEEEeccccceeEEEeeecCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 465 IHLWSIES--D---PKL-VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 465 i~iwd~~~--~---~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
|+-|++.. . ... ...+....+..-.+ + ...+|.+-+++..+| .|.+|+.. |+++..+.-+...+++++|
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~--~-vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM--A-VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCce--E-EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 88887762 1 011 11111111110011 1 144666665555554 89999987 9999988887778888888
Q ss_pred cC-CCCcEEEEEECC
Q 008005 538 NP-ANLHMLASASDD 551 (581)
Q Consensus 538 ~p-~~~~~l~s~s~D 551 (581)
-- +...+++|+...
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 54 343455555544
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.018 Score=56.81 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=110.2
Q ss_pred CCEEEEEeC----------CCeEEEEEcccC----CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 284 GKYLASSSK----------DQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 284 g~~lasgs~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
..+|+.|.. .|.|.++++... .+++..... ...++|++++-. ++. |+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence 467887753 288999999863 345444443 347889999876 444 44433 478999999888
Q ss_pred c-EEEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeC--CCCeEEeec-cCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 350 E-CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDL--DGRELESWK-GQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 350 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
+ ....-.. ....+.++... ++++++|.....+.++.. ....+.... ......+.++.+-++++.+++++.+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 4433322 23466666655 569999998888887744 333333322 222346888888877789999999999
Q ss_pred EEEEECCCC---------e---eeEEecCCceEEE---EECC--CCC------EEEEEeeCCcEEEE
Q 008005 425 ILLLDREAN---------F---ERWIEEEEVITSF---SLSK--DNK------YLLVNLINQEIHLW 468 (581)
Q Consensus 425 i~i~d~~~~---------~---~~~~~~~~~i~~~---~~sp--~~~------~l~~~~~d~~i~iw 468 (581)
+.++..... . .........|+++ ++.| .+. .++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999887631 1 2233456667777 5555 222 47777888888743
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=6.5e-05 Score=66.27 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=88.6
Q ss_pred EEEEEcCCeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 416 IISICREAAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
+...+.+|.|.-++++........ +... ...-.-+..+++|+.+|.|++|...........+...... +.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~---i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES---IDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc---cee
Confidence 444566777777776654411111 1111 1222245679999999999999876321222222111111 111
Q ss_pred -eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC-CCEEEEEEcCCCCcEEEEE--ECCCcEEEecCCccc
Q 008005 493 -CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASA--SDDRTIRIWGLDQIN 563 (581)
Q Consensus 493 -~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~--s~Dg~I~iW~~~~~~ 563 (581)
.....++.+.++++.||.|+.|++...+.+.....|. .++..+..+..+ .+++++ |.|..++.|++....
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 1223455689999999999999999999888888887 566666666656 577777 888888889887543
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.098 Score=55.04 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=130.4
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC---CCCeEEEee------CCCcEEEEEcCCCcEEEEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCG------QEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~ 355 (581)
..++.++.|+.+.-.|..++...-. .....+... ..+.-+| ++ .++++. .+|.|..+|.++|+.+..+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~-~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS-KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee-ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 4566777899999999887643211 111111110 0111122 34 444443 3689999999999987765
Q ss_pred ecCCC-------------------------------eE-EEEEEecCCCeEEEEeCC-----C-----------cEEEEe
Q 008005 356 EKTGV-------------------------------GL-ISCGWFLDGGGIFAGMTD-----K-----------SICLWD 387 (581)
Q Consensus 356 ~~~~~-------------------------------~v-~~~~~~~~~~~l~sg~~d-----g-----------~i~vwd 387 (581)
..-.. .+ ..+++.+..+.++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 43211 11 123555666667666522 2 566778
Q ss_pred CCCCeEEeeccCcccc---------EEEEEEeeCCC---EEEEEEcCCeEEEEECCCCeee----------EEec---C-
Q 008005 388 LDGRELESWKGQKTLR---------ISDMAITDDGK---RIISICREAAILLLDREANFER----------WIEE---E- 441 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~---------i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~----------~~~~---~- 441 (581)
++++++.=........ ..-+.+..+|+ .++.++.+|.+++.|.++++.. +... .
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 8887765333221111 12222334665 6778999999999999987631 1000 0
Q ss_pred -Cc----------------------------eEEEEECCCCCEEEEEeeC------------------------------
Q 008005 442 -EV----------------------------ITSFSLSKDNKYLLVNLIN------------------------------ 462 (581)
Q Consensus 442 -~~----------------------------i~~~~~sp~~~~l~~~~~d------------------------------ 462 (581)
.+ -..++++|+..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0125677777666665544
Q ss_pred ---CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC
Q 008005 463 ---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 463 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 528 (581)
+.|.-+|+.++ +..-............ . ...+.+++.++.||.++.+|.++|+.+..++-.
T Consensus 438 ~~~g~l~AiD~~tG-k~~W~~~~~~p~~~~~---l-~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITG-KIVWEHKEDFPLWGGV---L-ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCC-ceeeEecCCCCCCCcc---e-EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 23555555555 3332222111100000 0 114457778888999999999999999887654
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.00017 Score=44.99 Aligned_cols=38 Identities=42% Similarity=0.716 Sum_probs=34.1
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd 300 (581)
++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34667778999999999999999999999999999996
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00045 Score=69.64 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=76.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEE-EEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
-.-.|..+.|+|.-.++|++..+|.|.+..+. +..+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44568889999999999999999999999886 245566776777777 9999999999999999999999999999
Q ss_pred cEEEEEe-cCCCeEEEEEEe
Q 008005 350 ECLHVYE-KTGVGLISCGWF 368 (581)
Q Consensus 350 ~~~~~~~-~~~~~v~~~~~~ 368 (581)
..+..+. .....|.++.|.
T Consensus 95 ~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred Cceeccccccccchheeecc
Confidence 8776632 224566677775
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.03 Score=53.99 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=128.0
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEec
Q 008005 279 QFSHDGKY-LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 279 ~~s~~g~~-lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
.|.++... +.+--..+.|.-|+..++.. ..+. +.+.+.++..-.++..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 46676664 44445677888888865422 1222 2333445444445556665543 366677766655333221
Q ss_pred C-----CCeEEEEEEecCCCeEEEEeC-----------CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 358 T-----GVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 358 ~-----~~~v~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
. ....+.+...|+|.+.++... -|.|+.+|.. +........+-...+.++|+||++.++.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 234556777788766554333 1345555543 3344444333336788999999998888766
Q ss_pred C-CeEEEEECCC--Ce----e---eEEecCCceEEEEECCCCCEEEEEeeCC-cEEEEEecCCCceeEEEeccccceeEE
Q 008005 422 E-AAILLLDREA--NF----E---RWIEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 422 d-g~i~i~d~~~--~~----~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
. +.|.-|++.. .. . ......+..-.++...+|.+-+++..+| .|..|+.+ + +++..+...... ..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~--~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKR--PT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCCC--Cc
Confidence 4 7888887763 11 1 1112346677788888898876555554 89999988 4 677776665322 34
Q ss_pred EeeecCCCCcEEEEEeC
Q 008005 491 RSCFGGFEQAFIASGSE 507 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~ 507 (581)
.++|..++.+.|+..+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 56777777666655544
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.50 E-value=0.00033 Score=43.57 Aligned_cols=39 Identities=51% Similarity=0.924 Sum_probs=34.3
Q ss_pred CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+++...+..|...|+++.|++.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 35567777899999999999988 7999999999999996
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.0099 Score=46.80 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=66.7
Q ss_pred EEEEEeCC---CC-CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 320 VFTVSWSP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 320 V~~l~~sp---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
|++|++.. || +.|++|+.|..|++|+- .+.+..+... ..|++++-... ..|+.+..+|+|-+|+-..+....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence 56666654 32 57999999999999973 4566666554 46777776654 679999999999999864333222
Q ss_pred eccCccccEEEEEEee---CC-CEEEEEEcCCeEE
Q 008005 396 WKGQKTLRISDMAITD---DG-KRIISICREAAIL 426 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~---~~-~~l~~~~~dg~i~ 426 (581)
.....+.++++.. || ..|++|-.+|.|-
T Consensus 78 ---KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 ---KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222466655543 22 2678887777764
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00071 Score=68.24 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEE-EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..++..++ +++|.|||+.|++|-.||+|++.|+..+....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 777888887777777 99999999999999999999999998655443
Q ss_pred e-ccCccccEEEEEEe
Q 008005 396 W-KGQKTLRISDMAIT 410 (581)
Q Consensus 396 ~-~~~~~~~i~~i~~~ 410 (581)
. .......|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 3 22223356666665
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.42 E-value=0.017 Score=61.17 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=123.6
Q ss_pred CCeEEEeeCC------CcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCC-C-----cEEEEeCCCCeEEe
Q 008005 329 DHQLLTCGQE------EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTD-K-----SICLWDLDGRELES 395 (581)
Q Consensus 329 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-g-----~i~vwd~~~~~~~~ 395 (581)
+.+++.||.+ ..+..||..++.......-. ...-.+++.. ++...++|+.| | ++..||....+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3444555554 35777887776433322211 1122333333 56778888888 3 57788888777555
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCeeeEEe-cCCceEEEEE-CCCCCEEEEEeeCC-----
Q 008005 396 WKGQKTLRISDMAITDDGKRIISICREA-----AILLLDREANFERWIE-EEEVITSFSL-SKDNKYLLVNLINQ----- 463 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-~~~~i~~~~~-sp~~~~l~~~~~d~----- 463 (581)
.......+...-...-+|...++|+.|| ++-.||..+.+-.... ......+... .-+|...++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 4443333333333344677888888886 4778888877622221 1112222221 22677777777554
Q ss_pred -cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-----cEEEEeCCCCceEEE--eccCCCCEEEE
Q 008005 464 -EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QVYIWHRYTGELVLA--LAGHSGSVNCV 535 (581)
Q Consensus 464 -~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~h~~~v~~l 535 (581)
++..||..++. -. ....-.........+ .-++.+.+.|+.|+ +|..||..+.+.... +....+.+..+
T Consensus 444 ~sve~YDP~t~~-W~-~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 444 NSVECYDPETNT-WT-LIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ceEEEEcCCCCc-ee-ecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 46778876641 11 111111111111111 34677888888876 377788776554332 22223333333
Q ss_pred EEcCCCCcEEEEEECCC-----cEEEecCCccccc
Q 008005 536 SWNPANLHMLASASDDR-----TIRIWGLDQINMK 565 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg-----~I~iW~~~~~~~~ 565 (581)
.+ ++ .+.+.|+.|| +|..||..+.+-.
T Consensus 520 ~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 520 VL--GG-KLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred EE--CC-EEEEEecccCccccceeEEcCCCCCcee
Confidence 33 23 6888888886 5777877665543
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.40 E-value=0.015 Score=61.72 Aligned_cols=224 Identities=11% Similarity=0.105 Sum_probs=113.8
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC------CcEEEEEcCCCcEEEEEe--cCCCeEEEEE
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDVNSGECLHVYE--KTGVGLISCG 366 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~--~~~~~v~~~~ 366 (581)
.+..||..++ .+.....+...... .+++. -++...+.||.+ ..+..||..+..-...-. ...... +++
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 4677787653 33332222221111 12222 256777777754 347788887765322111 111111 122
Q ss_pred EecCCCeEEEEeCCC-----cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC-------------------
Q 008005 367 WFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE------------------- 422 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------- 422 (581)
.-++...+.|+.++ .+..||..+.................+..-++...+.|+.+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 23666777787754 47889988776554443222222222223467777777654
Q ss_pred ----CeEEEEECCCCeeeEEec---CCceEEEEECCCCCEEEEEeeC------CcEEEEEecC-C-CceeEEEeccccce
Q 008005 423 ----AAILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLIN------QEIHLWSIES-D-PKLVSRYKGHKRAR 487 (581)
Q Consensus 423 ----g~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~-~-~~~~~~~~~~~~~~ 487 (581)
..+..||..+..-..... ...-.+++ .-+++..++|+.+ ..+..||..+ + -..+..+.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-- 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-- 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--
Confidence 247788888766221111 11111122 2256666666653 2467788776 3 122222222111
Q ss_pred eEEEeeecCCCCcEEEEEeCCC--cEEEEeCCCCceEEEeccCC
Q 008005 488 FVIRSCFGGFEQAFIASGSEDS--QVYIWHRYTGELVLALAGHS 529 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~ 529 (581)
....+ .-++++.++|+.|| .+..||..+.+-...-..|+
T Consensus 505 -~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 505 -ALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred -cceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 11111 33778889999888 77788877766554444443
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.36 E-value=0.019 Score=60.88 Aligned_cols=182 Identities=10% Similarity=0.090 Sum_probs=102.9
Q ss_pred CcEEEEEEcCCCCEEEEEe------CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC--------
Q 008005 273 DEVWFLQFSHDGKYLASSS------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-------- 338 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-------- 338 (581)
..+...++||||+.+|... .|+.-.||-...++.... ...+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999999887665 244445554432332222 12332 37888999998877776532
Q ss_pred ----CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE---EeCCCCeEEe-----eccCccccEEE
Q 008005 339 ----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL---WDLDGRELES-----WKGQKTLRISD 406 (581)
Q Consensus 339 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v---wd~~~~~~~~-----~~~~~~~~i~~ 406 (581)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....+.... ....-...+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 223333444333222 2245799999999999988766 477777 4434443211 11222223688
Q ss_pred EEEeeCCCEEEEEEcCC--eEEEEECCCCeeeEEec---CCceEEEEECCCCCEEEEEeeCCcE
Q 008005 407 MAITDDGKRIISICREA--AILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 407 i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
+.|..++..+ ++..++ .+...++.......... ...+..++-+++ .+++...++.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9999999855 444443 34444555443222122 445566666552 35555555533
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.34 E-value=0.061 Score=48.02 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=119.2
Q ss_pred eEEEeeCCCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCC---CeEEEEeCCCcEEEEeCCCCe--EEee-----ccC
Q 008005 331 QLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDG---GGIFAGMTDKSICLWDLDGRE--LESW-----KGQ 399 (581)
Q Consensus 331 ~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~---~~l~sg~~dg~i~vwd~~~~~--~~~~-----~~~ 399 (581)
++.+-=..|.|.-||+.+.+..+. +... +..++.+--.+ .+.+.++..-.|.-||-.... +... ...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444456777788877553322 2222 23333332222 222333333344556632211 1111 111
Q ss_pred ccccEEEEEEeeCCCEEEEEEc---------CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEE-eeCCcEEEEE
Q 008005 400 KTLRISDMAITDDGKRIISICR---------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWS 469 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd 469 (581)
...+.++-..+|+|++++-.-. .|.++.|-...........-.--+.++|+.+.+.+... +.+-+|.-||
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 2346778888999998432212 35666666555544444445556788999888776655 4466777777
Q ss_pred --ecCCC----ceeEEEec-----cc-cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 470 --IESDP----KLVSRYKG-----HK-RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 470 --~~~~~----~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
..++. +.+..+.. +. .....| ..+|++.++.-+.|+|...|..+|+.+.+++-....|++++|
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 33331 12222221 10 111111 447788888888899999999999999999988999999999
Q ss_pred cCCCC-cEEEEEEC
Q 008005 538 NPANL-HMLASASD 550 (581)
Q Consensus 538 ~p~~~-~~l~s~s~ 550 (581)
--.+- -+.+|+..
T Consensus 262 gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 262 GGKNLDILYVTTAA 275 (310)
T ss_pred cCCCccEEEEEehh
Confidence 75421 24445543
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.06 Score=50.00 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=106.9
Q ss_pred ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
+.+-...|.++.|+|+.+.|++......-.||=..+|+.++++.-. -...-.+.|..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999999999998888888887889998887633 223446778878877777778888888877532
Q ss_pred -eEEe---------eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe------------cCCceEEEEE
Q 008005 392 -ELES---------WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE------------EEEVITSFSL 449 (581)
Q Consensus 392 -~~~~---------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~i~~~~~ 449 (581)
.... ...........++|.|....|..+-.-.-+.+|........... .-..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 1111 01122446788999999999998887777777765543311110 1123566777
Q ss_pred CCC-CCEEEEEeeCCcEEEEEecCC
Q 008005 450 SKD-NKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 450 sp~-~~~l~~~~~d~~i~iwd~~~~ 473 (581)
++. +..++.+..++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 764 444455555566666666553
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0074 Score=64.94 Aligned_cols=102 Identities=16% Similarity=0.277 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
.+..++.|+..|.+-..|+..+ +.....-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4557888998999988888643 22223333446789999999999999999999999999999999998888775544
Q ss_pred E---EEEEecCCCeEEEEeCCCcEEEEeC
Q 008005 363 I---SCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 363 ~---~~~~~~~~~~l~sg~~dg~i~vwd~ 388 (581)
+ .+.|..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 4455566667888877776 5544
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.022 Score=60.40 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=90.5
Q ss_pred CCCCEEEEEeCCCCCeEEEee------CCC--cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-------
Q 008005 316 HRKPVFTVSWSPNDHQLLTCG------QEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------- 380 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------- 380 (581)
....+...+++|||+.++... .|+ .|.+++. .+.. ..+.... ....-.|+|||..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999887665 244 4445454 2222 3332222 37788999998877776432
Q ss_pred -----CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE---EECCCCeeeE------Ee-cCCceE
Q 008005 381 -----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL---LDREANFERW------IE-EEEVIT 445 (581)
Q Consensus 381 -----g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~------~~-~~~~i~ 445 (581)
+.+.+.+++.+.... .....|..+.|+|||.+++... ++.|++ -....+.... .. ....+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 234444554444332 2234699999999999998876 577777 4434443222 12 223468
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 446 SFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
++.|.+++.++ ++..++...+|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEe
Confidence 89999998854 55555554555543
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.27 E-value=0.26 Score=49.64 Aligned_cols=273 Identities=11% Similarity=0.059 Sum_probs=147.4
Q ss_pred CCCEEEEEeCCCeEEEEEcccCC-eeeEEEEecCCCCCEEEEEeCC-----CCCeEEEeeCCCcEEEEEcCC--Cc----
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNS--GE---- 350 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~--~~---- 350 (581)
+...+++||..|.++||+...++ ...-...-..-..+|..+..-+ +...||+ =.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34589999999999999986432 1111111122356777776532 2233444 4456788887732 11
Q ss_pred ---EEEEEecC--CCeEEEEEEec----C-CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 351 ---CLHVYEKT--GVGLISCGWFL----D-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 351 ---~~~~~~~~--~~~v~~~~~~~----~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
.+..+..| ......+++-| . ...+.+-+.||.+.+++-+.-......... --...+.+.+....+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEEec
Confidence 12222222 22333344333 2 356888899999999998776655555442 2456788999999999999
Q ss_pred cCCeEEEEECCCCe------------------------eeEEecCCceEEEE---ECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 421 REAAILLLDREANF------------------------ERWIEEEEVITSFS---LSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 421 ~dg~i~i~d~~~~~------------------------~~~~~~~~~i~~~~---~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.+..+..|....-. .....-...+..+. ++.....+++-+ ...+.+.+-.+.
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G~ 272 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNGS 272 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCCe
Confidence 99888888642211 11122333344433 332333333333 445555554332
Q ss_pred CceeEEEeccccceeEEEee-ecCCC-CcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc--CCCCcEEEEEE
Q 008005 474 PKLVSRYKGHKRARFVIRSC-FGGFE-QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN--PANLHMLASAS 549 (581)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~-~~~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s 549 (581)
-+..+++............. ...++ ...++.++.++.+.||.- .+++..-+....+| ++... ++-+.+|++-+
T Consensus 273 l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 273 LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEc
Confidence 22233332222211111110 01112 235888999999999963 33333333323333 33322 22224899999
Q ss_pred CCCcEEEecCCc
Q 008005 550 DDRTIRIWGLDQ 561 (581)
Q Consensus 550 ~Dg~I~iW~~~~ 561 (581)
.+|.+.+-=+.+
T Consensus 350 ~~G~L~v~YLGT 361 (418)
T PF14727_consen 350 DEGQLSVSYLGT 361 (418)
T ss_pred CCCcEEEEEeCC
Confidence 999998866654
No 389
>PHA02713 hypothetical protein; Provisional
Probab=97.25 E-value=0.021 Score=60.62 Aligned_cols=187 Identities=7% Similarity=0.020 Sum_probs=99.3
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCeeeEE
Q 008005 370 DGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-----AILLLDREANFERWI 438 (581)
Q Consensus 370 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~ 438 (581)
++..+++|+.+ ..+..||..+............+-......-+++..+.|+.++ .+..||..+..-...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56666677653 3477888877765444333222222233344677777777653 488899887652211
Q ss_pred -ecC---CceEEEEECCCCCEEEEEeeCC-----------------------cEEEEEecCCCceeEEEeccccceeEEE
Q 008005 439 -EEE---EVITSFSLSKDNKYLLVNLINQ-----------------------EIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 439 -~~~---~~i~~~~~sp~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
... .....+.+ +++..++|+.++ .+..||..++ +- .....-......
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W-~~v~~m~~~r~~-- 456 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IW-ETLPNFWTGTIR-- 456 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eE-eecCCCCccccc--
Confidence 111 11112222 577777776542 4667777654 11 111111011000
Q ss_pred eeecCCCCcEEEEEeCC------CcEEEEeCCC-C--ceEEEeccCCCCEEEEEEcCCCCcEEEEEECCC--cEEEecCC
Q 008005 492 SCFGGFEQAFIASGSED------SQVYIWHRYT-G--ELVLALAGHSGSVNCVSWNPANLHMLASASDDR--TIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~d------g~I~iwd~~~-~--~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~iW~~~ 560 (581)
.....-++++.+.|+.+ ..+..||..+ . ..+..+.........+.. ++ ++.++||.|| ++-.||+.
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcc
Confidence 11112356666777654 2467899776 3 334444433333333333 45 7899999998 78888888
Q ss_pred ccccc
Q 008005 561 QINMK 565 (581)
Q Consensus 561 ~~~~~ 565 (581)
+.+-.
T Consensus 534 ~~~W~ 538 (557)
T PHA02713 534 TYEWN 538 (557)
T ss_pred ccccc
Confidence 77644
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0099 Score=59.07 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=99.4
Q ss_pred CCCeEE-EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC-------eEEEEeCCCcEEEEeCCC--CeEEeec
Q 008005 328 NDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-------GIFAGMTDKSICLWDLDG--RELESWK 397 (581)
Q Consensus 328 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~sg~~dg~i~vwd~~~--~~~~~~~ 397 (581)
+.++|+ ++.....++-.|++.|+.+...+.+.. |.-+.+.|+.+ .-+.|-.|+.|.-||.+- .....+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788889999999999888765 66677777543 245677899999999863 2122222
Q ss_pred cCc----cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 398 GQK----TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 398 ~~~----~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
..+ .....|.+-..+| ++++|+.+|.|++||.-... ..+.....+|..+..+.+|+++++.+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 211 2346677766666 89999999999999984333 45556788999999999999998766 6667666653
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.13 E-value=0.052 Score=42.84 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=66.8
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 275 VWFLQFSH---DG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~---~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
|+++++.. || +-|++|+.|..|+||+-+ ..+..+.. .+.|++++-... ..++.+-.+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 55666554 43 479999999999999865 33444443 455777777665 57899999999999974 33
Q ss_pred EEEEEecCCCeEEEEEEecCC----CeEEEEeCCCcEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDG----GGIFAGMTDKSIC 384 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~----~~l~sg~~dg~i~ 384 (581)
.+...+... .++++.+..-. ..|++|-.+|.|-
T Consensus 73 RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344444333 36666655422 2588888888764
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.13 E-value=0.27 Score=47.20 Aligned_cols=273 Identities=11% Similarity=0.063 Sum_probs=126.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccC-CeeeEEEEecCC--CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
...+..|.|..+.+-+|+|. .+. |+...++ ..+.....-... .-...++.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 44788999986666666664 453 4444433 334332211111 123667777643 3344 44454 33444444
Q ss_pred CcEEEEEe---cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 349 GECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 349 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
|+.-..+. .-......+....++ ....++..|.|+.=.=.+..-..........+..+..++||++++++......
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 54333332 112333444444444 44444555665543333334444444444678899999999988888776677
Q ss_pred EEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE-Eecccccee-EEEeeecCCCCcE
Q 008005 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKRARF-VIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~-~i~~~~~~~~~~~ 501 (581)
.-||.-... .........|.++.|+|++...+++ ..|.|++=+.......... ........+ .+...+ .+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~-~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY-RPPNEI 246 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE-SSSS-E
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe-cCCCCE
Confidence 788866543 3444467889999999998776654 7888888772221111111 111112222 344444 555555
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEec---cCCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 502 IASGSEDSQVYIWHRYTGELVLALA---GHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.++|+ .|.+. ...+.|+.-.... .-.+.++.|.|.+.. .-...+.+|.|.-|
T Consensus 247 wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred EEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence 55554 44443 3345555444333 234568888887654 34456678877655
No 393
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.06 E-value=0.0074 Score=64.88 Aligned_cols=137 Identities=12% Similarity=0.175 Sum_probs=86.1
Q ss_pred cCCeEEEEECCCCe--eeEEecC-CceEEEEECC-----CCCEEEEEeeCCcEEEEEecCCCceeEEEeccc-cceeEEE
Q 008005 421 REAAILLLDREANF--ERWIEEE-EVITSFSLSK-----DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIR 491 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~-~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~i~ 491 (581)
....|+-.|++.++ ..+..+. .+|..++-.. +...-++|-.++.+..||.+-....+..-..+. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 45789999999988 3333333 2244443321 133467788899999999987532221111111 1111233
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+.. ....-+||.|+.+|.|++||.-..+....+++-..+|.+|..+.||..+|+|| +..+.+++..
T Consensus 582 ~~a-Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFA-TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred EEE-ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 333 44556899999999999999543333445667789999999999996555554 4577777753
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.28 Score=45.69 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=107.1
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEE-eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008005 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLW-DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
+-...+.++.|+|+.+.|++......-.++ +.++.-+....-..-.....+.+..++++.++--.+..+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 444569999999999999988777765555 444444444433333456778898888888888888888888766543
Q ss_pred -ee----EE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE--EEeccccc----eeEEEe-eecC
Q 008005 435 -ER----WI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--RYKGHKRA----RFVIRS-CFGG 496 (581)
Q Consensus 435 -~~----~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~----~~~i~~-~~~~ 496 (581)
.. .+ ..+.....++|+|....|+++-...-+.||.+........ ....+... ...++. .+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 00 11 1245678899999999999988888777777765432211 11111111 111222 2334
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
..+.+++-+.+++.+.-.|. +|+++..+
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~-~G~~~~~l 270 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDL-SGEVIELL 270 (316)
T ss_pred CCCcEEEEecCCceEEEEec-CCCeeeeE
Confidence 56778888888888888885 45554443
No 395
>PRK10115 protease 2; Provisional
Probab=96.91 E-value=0.91 Score=49.62 Aligned_cols=239 Identities=11% Similarity=0.042 Sum_probs=119.7
Q ss_pred CcEEEEEEcCCCCEEEEEeC-----CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC------CcE
Q 008005 273 DEVWFLQFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAI 341 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d------g~i 341 (581)
-.+..+.|||||++|+.+.. ...+++-|+.++..+ ...+.+ . -..++|++|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 35667889999998886532 235778888755211 111221 1 1469999999877665442 357
Q ss_pred EEEEcCCC--cEEEEEecCCCeEEEEEEec-CCCeEEEEeC---CCcEEEEeCC--CCeEEeeccCccccEEEEEEeeCC
Q 008005 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFL-DGGGIFAGMT---DKSICLWDLD--GRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 342 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~---dg~i~vwd~~--~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
..+++.++ +....+........-..+.+ ++++++..+. ++.+.+++.. .+...............+. ..+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--HYQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--eCC
Confidence 88888887 44444544333333233334 7777665443 4578888852 2222222222211222222 223
Q ss_pred CEEEEEEcC----CeEEEEECCC-Ce-eeEEec-C-CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccc
Q 008005 414 KRIISICRE----AAILLLDREA-NF-ERWIEE-E-EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHK 484 (581)
Q Consensus 414 ~~l~~~~~d----g~i~i~d~~~-~~-~~~~~~-~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~ 484 (581)
..+...+.. ..|...++.. .. .....+ . ..+..+.+. .+.++++...++.-+++-+......+..+. ...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 444444332 2344455542 22 344444 2 367778876 334455555566655554443212333332 111
Q ss_pred cceeEEEeeecCCC-CcEEEEEeC---CCcEEEEeCCCCc
Q 008005 485 RARFVIRSCFGGFE-QAFIASGSE---DSQVYIWHRYTGE 520 (581)
Q Consensus 485 ~~~~~i~~~~~~~~-~~~l~sgs~---dg~I~iwd~~~~~ 520 (581)
.....+. ....++ +.++++.+. -+.++.+|..+++
T Consensus 359 ~~~~~~~-~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIA-YNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeec-ccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 1111111 111133 334444433 4578889987765
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.032 Score=51.26 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=113.3
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG 336 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 336 (581)
.+.-+-+-||. .|||||.+|...-.| |.|-|||.. ..+..+..+..|.-.-..+.|.+||+.++.+.
T Consensus 109 s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 109 SQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 33344455554 499999998876433 789999997 44566777888888888999999999988764
Q ss_pred CC------------------CcEEEEEcCCCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeCCCcE-----EE-EeC
Q 008005 337 QE------------------EAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKSI-----CL-WDL 388 (581)
Q Consensus 337 ~d------------------g~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i-----~v-wd~ 388 (581)
.. -.+.+.|..+|..+.+.. .+...+..+..-+||...+.+-..|.- .+ .-.
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 30 123334444444433221 223456666666666555544332210 00 000
Q ss_pred CCCeEEeecc------CccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEee
Q 008005 389 DGRELESWKG------QKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 389 ~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
.++.+..+.. .....|-+++.+.+...++..+ ..+...+||..++.......-.....++- ...-+++.+.
T Consensus 261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~--~~~gf~vssg 338 (366)
T COG3490 261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAA--AKGGFAVSSG 338 (366)
T ss_pred CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccccee--ccCceEEecC
Confidence 1111111110 1112467788876555555444 45567899999987444333333333333 3344666677
Q ss_pred CCcEEEEEe
Q 008005 462 NQEIHLWSI 470 (581)
Q Consensus 462 d~~i~iwd~ 470 (581)
+|.+.++.-
T Consensus 339 ~G~~~~~s~ 347 (366)
T COG3490 339 QGRIIFYSR 347 (366)
T ss_pred CceEEeccc
Confidence 888887743
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.011 Score=58.88 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=86.3
Q ss_pred EcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCE-------EEEEeeCCcEEEEEecCCCc-eeEEEeccccceeEE
Q 008005 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKY-------LLVNLINQEIHLWSIESDPK-LVSRYKGHKRARFVI 490 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~-------l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~i 490 (581)
.....++-.|++.++ .........|+-+.+.|+.+. -++|-.++.|.-||.+-... .+..-.+|.-....-
T Consensus 353 ~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 353 GEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 344567777777777 222223333677777775432 35577789999999985433 233333333211111
Q ss_pred EeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
-.|+.....-+|++||.+|.|++||.-.......+++-..+|..|..+.+|..+|+|| +..+.+-++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 1333345567899999999999999733334456788889999999999995444444 445655554
No 398
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0091 Score=57.37 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCccC-C------HHHHHHHHHHHcCChHHHHHHhhcCC--CCChhHHHHHHHH
Q 008005 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH-S------SVVNQFMQQVMDGYWDESIITLHMIG--LSDETAVKSASFL 135 (581)
Q Consensus 65 e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~-~------~~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~~ 135 (581)
.++.+|..|++..|..+.+..|-+|+|.... . ..+.++.+++..|+-.-|+..+..-. +.. ....+.|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHHH
Confidence 3589999999999999999999999999864 2 26788889999999988887776532 222 23468899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHhhcccccccC
Q 008005 136 ILEQKFLELLRRDKVS--AALNSLRSEIVPLQIN 167 (581)
Q Consensus 136 ~~~q~~lell~~~~~~--~a~~~l~~~l~pl~~~ 167 (581)
+.++.|++++..|... +|+...|+.++|+...
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~ 229 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVAD 229 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccc
Confidence 9999999999987766 9999999999998653
No 399
>PRK10115 protease 2; Provisional
Probab=96.76 E-value=1.2 Score=48.74 Aligned_cols=237 Identities=11% Similarity=0.067 Sum_probs=118.7
Q ss_pred CEEEEEeCCCCCeEEEeeCC-----CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC------CcEEEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWD 387 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------g~i~vwd 387 (581)
.+..+.|+||+++|+.+... ..|++-|+.+|..+...-... -..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46778899999988765432 258899998886332211111 1458999999887766542 3688888
Q ss_pred CCCC--eEEeeccCccccEE-EEEEeeCCCEEEEEEc---CCeEEEEECCC--Ce-eeEEecCCce-EEEEECCCCCEEE
Q 008005 388 LDGR--ELESWKGQKTLRIS-DMAITDDGKRIISICR---EAAILLLDREA--NF-ERWIEEEEVI-TSFSLSKDNKYLL 457 (581)
Q Consensus 388 ~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~---dg~i~i~d~~~--~~-~~~~~~~~~i-~~~~~sp~~~~l~ 457 (581)
+.+. +-............ .+..+.++++++..+. ++.+.+++... .. .........+ ..+. +.. ..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEE
Confidence 8765 22222222222222 3334448887765543 35688888532 22 2223332222 2222 222 3344
Q ss_pred EEeeC--C--cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEE--EeCCCCceEEEec-cCCC
Q 008005 458 VNLIN--Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI--WHRYTGELVLALA-GHSG 530 (581)
Q Consensus 458 ~~~~d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i--wd~~~~~~~~~~~-~h~~ 530 (581)
..+.. . .|...++... .....+..+.... .+....+. .+.++++...+|.-++ ++..++ .+..+. ....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~-~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~ 359 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENI-MLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPA 359 (686)
T ss_pred EEEcCCCCCceEEEecCCCc-ccCeEEECCCCCC-EEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCc
Confidence 33332 2 3333344321 2223333332211 22222222 4466777777775444 454333 334333 2222
Q ss_pred CEEEEEEc--CCCCcEEEEEEC---CCcEEEecCCccc
Q 008005 531 SVNCVSWN--PANLHMLASASD---DRTIRIWGLDQIN 563 (581)
Q Consensus 531 ~v~~l~~~--p~~~~~l~s~s~---Dg~I~iW~~~~~~ 563 (581)
.+..+.++ +++..++++.+. -+.+..+|+.+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 33334444 444345555543 3567778877654
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.49 Score=44.03 Aligned_cols=193 Identities=11% Similarity=0.001 Sum_probs=111.7
Q ss_pred EEEEEecCC-CeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEeeccCc-cccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 351 CLHVYEKTG-VGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 351 ~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.+..+.... .-...+.|..++..+-+.+.-| .|+.+|+.+++........ ..--..++... ++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 344554333 3344667767777777777666 7999999987765433222 22233344442 23344445788999
Q ss_pred EEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc--eeEEEeeecCCCCcEEE
Q 008005 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 503 (581)
+||..+.+ .......+.-..++ .|++.|+.......++++|..+- +....+...... +..+.-.-+ -+|...|
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~-i~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY-INGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE-ETTEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE-EcCEEEE
Confidence 99998876 44444455556666 46777887777788999997765 555554433221 111111111 1566666
Q ss_pred EEeCCCcEEEEeCCCCceEEEecc------------C---CCCEEEEEEcCCCCcEEEEE
Q 008005 504 SGSEDSQVYIWHRYTGELVLALAG------------H---SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~~~~------------h---~~~v~~l~~~p~~~~~l~s~ 548 (581)
-.=....|...|..+|+.+..+.. + ....+.|+|+|....+++||
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666677888889999988876531 1 35689999999886777776
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.72 E-value=0.54 Score=44.21 Aligned_cols=229 Identities=10% Similarity=0.088 Sum_probs=133.7
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcC------CC-cEEEEEec-----CCCeEEEEEEecCCC------------eEE
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVN------SG-ECLHVYEK-----TGVGLISCGWFLDGG------------GIF 375 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 375 (581)
-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999888888888999999986 12 22333332 123567777764322 367
Q ss_pred EEeCCCcEEEEeCCCC------eEEeeccCc-cccEEEEEEee--CCCEEEEE-EcCCeEEEEECCCCeeeE----Ee--
Q 008005 376 AGMTDKSICLWDLDGR------ELESWKGQK-TLRISDMAITD--DGKRIISI-CREAAILLLDREANFERW----IE-- 439 (581)
Q Consensus 376 sg~~dg~i~vwd~~~~------~~~~~~~~~-~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~----~~-- 439 (581)
.+++||+|.-|...-. ......... ..-...+++.. .+.+|..+ -..++|.++|-.-..... ..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 7889999999986321 112222111 22234455543 35566555 367889998865443111 00
Q ss_pred --------------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc--cceeEEE---eeecCCCCc
Q 008005 440 --------------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK--RARFVIR---SCFGGFEQA 500 (581)
Q Consensus 440 --------------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~i~---~~~~~~~~~ 500 (581)
..-.|+-..-.++.+.=+.+..-|.|-+||+.. ..++++.... ..-+.+. ..|....+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 000111222223332223333457899999877 5677664222 1222222 345567788
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCCC------CEEEEEEcCC---C--CcEEEEEEC
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAGHSG------SVNCVSWNPA---N--LHMLASASD 550 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~v~~l~~~p~---~--~~~l~s~s~ 550 (581)
+|+.--.||+|..||..+++.+..+....+ .++.+.|... + ..++.+++-
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCC
Confidence 888877899999999999998888776443 4567777652 1 145555553
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.71 E-value=0.62 Score=44.80 Aligned_cols=229 Identities=15% Similarity=0.147 Sum_probs=105.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC-CCcE-
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGEC- 351 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~- 351 (581)
...+|.|..+ ..+++| ..+ +.+...+.+..+..+..-..-.+....+....++..++ ++..|.| |... .|+.
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 3567777543 344544 344 44444444555544432222223333444433443333 3444543 3333 3332
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
..........+..+..++|+.+++++.......-||.-.............+|..+.|.|++...+ ....|.|++=+..
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDP 215 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-T
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCC
Confidence 223344456788888889999888887666667888754433333333445899999999976655 4489999988833
Q ss_pred CCeeeEEe-------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccccceeEEEeeecCCCCcEEE
Q 008005 432 ANFERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 432 ~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
.....+.. ..-.+..++|.+++...++|+ .|.+ +...+.+ +.-+... ...-+....+..|..+ ..-+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~--~~gf 290 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNP--DKGF 290 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEET--TEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC-ccceECccccCCCCceEEEEEcCC--CceE
Confidence 33222222 223378999999877777665 4433 3344444 3333322 2222222334445444 2334
Q ss_pred EEeCCCcEEEE
Q 008005 504 SGSEDSQVYIW 514 (581)
Q Consensus 504 sgs~dg~I~iw 514 (581)
..+.+|.|--|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 45677766544
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.57 Score=43.63 Aligned_cols=273 Identities=11% Similarity=0.078 Sum_probs=143.4
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE- 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~- 350 (581)
.+-+..+.++.+ +...+..+.-++|.|+.+......+..+.- .+.-.++..+ |++...+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence 344556666544 566666666799999987655444433332 2334555554 7888888877778888887643
Q ss_pred --EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC--ccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 351 --CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ--KTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 351 --~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
....+.........++.+ |++-+.+..|+-+.+.|+.......+... ....+.++..+++-.+++ ..+--+.
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v--vy~egvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV--VYDEGVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE--EcccceE
Confidence 334444444444556655 77888888999999999965332222221 112566666665544433 3445567
Q ss_pred EEECCCCe-eeEEe--cCCceEEE-EECCCCCEEEEEeeCCcEEEEEecCCCceeEE--EeccccceeEEEeeecCCCCc
Q 008005 427 LLDREANF-ERWIE--EEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESDPKLVSR--YKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 427 i~d~~~~~-~~~~~--~~~~i~~~-~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~ 500 (581)
+.|..+.. ..... ....+.++ .+.-.+++..+...+.-+.+-|+.+...+.-. +.........++ ..+.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~-----ay~~ 311 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR-----AYGN 311 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE-----EecC
Confidence 77776655 12221 11112222 22334666777666777777777664322211 111110101111 1123
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++..+..+ ...+-+....+......+....+.+.+.+-+. +.+.+...++-+.||+..
T Consensus 312 y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~-q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 312 YNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDT-QIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEe-eEEEEeecCCCEEEEEec
Confidence 33333322 33333433332222222222223333333344 467788888889998763
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.66 Score=43.00 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=122.7
Q ss_pred EEEeCCCC-CeEEEeeCCCc-EEEEEcCCCcEEEEEecCCC--eEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCe
Q 008005 322 TVSWSPND-HQLLTCGQEEA-IRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRE 392 (581)
Q Consensus 322 ~l~~sp~~-~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 392 (581)
.|+|+|.. .-++.+-.-|+ ..++|....+...++...+. -.-.-.|+|||.+|++.-.| |.|-+||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 56777743 33555555554 56788887776655543221 12234689999999886544 679999987422
Q ss_pred E-EeeccCccccEEEEEEeeCCCEEEEEEc------------------CCeEEEEECCCCe---eeEE---ecCCceEEE
Q 008005 393 L-ESWKGQKTLRISDMAITDDGKRIISICR------------------EAAILLLDREANF---ERWI---EEEEVITSF 447 (581)
Q Consensus 393 ~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~---~~~~---~~~~~i~~~ 447 (581)
. .-....+......+.+.+||+.++.+.. .-++.+.|..++. .... .+.-.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 1 2222333446778999999999887643 1234445544443 1111 233457777
Q ss_pred EECCCCCEEEEEeeCCc----EEEEEecCCCceeEEEecccc-----ceeEEEeeecCCCCcEE-EEEeCCCcEEEEeCC
Q 008005 448 SLSKDNKYLLVNLINQE----IHLWSIESDPKLVSRYKGHKR-----ARFVIRSCFGGFEQAFI-ASGSEDSQVYIWHRY 517 (581)
Q Consensus 448 ~~sp~~~~l~~~~~d~~----i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~sgs~dg~I~iwd~~ 517 (581)
+..+||...+.+-..|. --+.-.....+++..+..... ..+ +.+.....+..++ +|.-..+...+||..
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anY-igsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANY-IGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhh-hhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 88888776665443221 011111111122222221111 011 1111113233344 444445577899999
Q ss_pred CCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+|..+..-.-. .+..++-...+ ++..+.+|.+.++.-
T Consensus 311 tG~vv~~a~l~--daaGva~~~~g---f~vssg~G~~~~~s~ 347 (366)
T COG3490 311 TGAVVSEAALP--DAAGVAAAKGG---FAVSSGQGRIIFYSR 347 (366)
T ss_pred CCcEEeccccc--ccccceeccCc---eEEecCCceEEeccc
Confidence 99887644321 22334433333 555567788887743
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.48 E-value=0.79 Score=50.25 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=113.3
Q ss_pred CCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCe--------EEEEEEec----------------CCCeEEEEeCCCcEE
Q 008005 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG--------LISCGWFL----------------DGGGIFAGMTDKSIC 384 (581)
Q Consensus 329 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~sg~~dg~i~ 384 (581)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788889999999999988877643211 12233321 345888899999999
Q ss_pred EEeCCCCeEEeeccCccccEE-------------EEEEee--CCCEEEEEEc----------CCeEEEEECCCCeeeEEe
Q 008005 385 LWDLDGRELESWKGQKTLRIS-------------DMAITD--DGKRIISICR----------EAAILLLDREANFERWIE 439 (581)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~i~-------------~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 439 (581)
-.|.++++..-...... .+. .+.-.| .+..+++++. +|.|+-+|.++++..+.-
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99998877653322110 110 011111 1335666643 688999999999844432
Q ss_pred cCC-------------------c-eEEEEECCCCCEEEEEee------------------CCcEEEEEecCCCceeEEEe
Q 008005 440 EEE-------------------V-ITSFSLSKDNKYLLVNLI------------------NQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 440 ~~~-------------------~-i~~~~~sp~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~ 481 (581)
+.. . -..++++++...++.+.. .+.|.-.|.+++ +..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEEec
Confidence 210 0 123456665555555332 234555666666 4444444
Q ss_pred ccccceeE------EEeeecC-CCCc---EEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 482 GHKRARFV------IRSCFGG-FEQA---FIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 482 ~~~~~~~~------i~~~~~~-~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
......+. ....-.. .+|+ .++.++.+|.++++|.++|+++...
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 32211111 0011011 1443 7999999999999999999987654
No 406
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.47 E-value=1.1 Score=44.65 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCEEEEEe-CCCeEEEEEcccCC-eeeEEEEecC---CC----CCEEEEEeCCCCCeEEEeeC------CCcEEEEEcC
Q 008005 283 DGKYLASSS-KDQSAIIWEVKEDG-QVSLKHRLSG---HR----KPVFTVSWSPNDHQLLTCGQ------EEAIRRWDVN 347 (581)
Q Consensus 283 ~g~~lasgs-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~V~~l~~sp~~~~l~s~~~------dg~i~vwd~~ 347 (581)
+.++|+..+ ..+.|+|.|+.++. ..++.+++.. +. ..-..+---|+|..++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455777766 67889999998543 2333333332 11 11122233478888887632 2458888888
Q ss_pred CCcEEEEEecC---CCeEEEEEEecCCCeEEEEeC--------------------CCcEEEEeCCCCeEEeeccCcc--c
Q 008005 348 SGECLHVYEKT---GVGLISCGWFLDGGGIFAGMT--------------------DKSICLWDLDGRELESWKGQKT--L 402 (581)
Q Consensus 348 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~--------------------dg~i~vwd~~~~~~~~~~~~~~--~ 402 (581)
+.+........ ...-....|.|..+.+++... ..++.+||+.+++..+...... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77776665543 223456777887777777532 3579999999988776665432 2
Q ss_pred cEEEEEEee--CCCEEEEEE-cCCeEEEE-ECCCCe---eeEEec--------------------CCceEEEEECCCCCE
Q 008005 403 RISDMAITD--DGKRIISIC-REAAILLL-DREANF---ERWIEE--------------------EEVITSFSLSKDNKY 455 (581)
Q Consensus 403 ~i~~i~~~~--~~~~l~~~~-~dg~i~i~-d~~~~~---~~~~~~--------------------~~~i~~~~~sp~~~~ 455 (581)
.+..+.|.. +..+-.+++ -.++|..| ....+. ...+.. ..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 345566654 344433333 33444444 334333 111110 345789999999999
Q ss_pred EEEEee-CCcEEEEEecCCCceeE
Q 008005 456 LLVNLI-NQEIHLWSIESDPKLVS 478 (581)
Q Consensus 456 l~~~~~-d~~i~iwd~~~~~~~~~ 478 (581)
|++++- .|.|+.||+.....+..
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EEEEcccCCcEEEEecCCCCCCcE
Confidence 988765 89999999988644433
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.41 E-value=1.1 Score=44.16 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEE----EeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGELVL----ALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~----~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+.++++.-..+.|....+..+..+. .+......+.++++.||| .++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-eEEEEECCCCeEe
Confidence 56677777767788888876443222 223345589999999999 6888877888774
No 408
>PHA03098 kelch-like protein; Provisional
Probab=96.36 E-value=0.13 Score=54.71 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=91.2
Q ss_pred CCCCEEEEEeCCC------eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-----CcEEEEEcCCCc
Q 008005 282 HDGKYLASSSKDQ------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE 350 (581)
Q Consensus 282 ~~g~~lasgs~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~ 350 (581)
.++.+++.||.++ .+..||..++ .+.....+.........+.+ ++..++.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566677776542 4667777653 33222222212222222222 57777888765 347788887765
Q ss_pred EEEEEe--cCCCeEEEEEEecCCCeEEEEeCC------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 351 CLHVYE--KTGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 351 ~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
-...-. ...... +++ .-++...+.|+.+ ..+..||+.+.................+...++...+.|+.+
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 332111 111111 122 2356666666632 358889988766554333222111222333456666666542
Q ss_pred --------CeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeC-----CcEEEEEecCC
Q 008005 423 --------AAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (581)
Q Consensus 423 --------g~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~ 473 (581)
..+.+||..+..-.... ....-.+++. -+++.++.|+.+ +.+.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 23888998876622111 1111111111 256666666543 35666666553
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.35 E-value=0.14 Score=54.53 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=91.2
Q ss_pred CCCeEEEeeCCC------cEEEEEcCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeEE
Q 008005 328 NDHQLLTCGQEE------AIRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELE 394 (581)
Q Consensus 328 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~ 394 (581)
++..++.||.++ .+..||..+.+....-... .... +++ .-++..++.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 566777777543 5778888776653221111 1111 122 2356677777765 35778888776654
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEEcC------CeEEEEECCCCeeeEEec---CCceEEEEECCCCCEEEEEeeCC--
Q 008005 395 SWKGQKTLRISDMAITDDGKRIISICRE------AAILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQ-- 463 (581)
Q Consensus 395 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~-- 463 (581)
.............+..-+++..+.|+.+ ..+..||..+..-..... ...-.++. ..++..++.|+.++
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCCC
Confidence 4333222122222233456666666632 468889988765211111 11111222 22556666665432
Q ss_pred ------cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 008005 464 ------EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGE 520 (581)
Q Consensus 464 ------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~ 520 (581)
.+.+||..++ +- ........+......+ ..++.+++.|+.+ +.|.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~-~W-~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 451 NIKVYNIVESYNPVTN-KW-TELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceEEEecCCCC-ce-eeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3778887764 11 1111111111111111 1256666666654 367777766543
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.34 E-value=0.8 Score=45.55 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred EcCCCCEEEEEe--C----CCeEEEEEcccCCeeeEEEEecC---CCCCEEEEEeCCCCCeEEEeeC-------------
Q 008005 280 FSHDGKYLASSS--K----DQSAIIWEVKEDGQVSLKHRLSG---HRKPVFTVSWSPNDHQLLTCGQ------------- 337 (581)
Q Consensus 280 ~s~~g~~lasgs--~----dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~~~------------- 337 (581)
--|+|++++|+- . -|-+.+.|-++- ........ ....-....|.|..+.++|...
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 347888888753 2 245667766532 33333322 2233466778887778887643
Q ss_pred -------CCcEEEEEcCCCcEEEEEecCCC--eEEEEEEec--CCCeEEEE-eCCCcEEEEeC-CCCe-----EEeeccC
Q 008005 338 -------EEAIRRWDVNSGECLHVYEKTGV--GLISCGWFL--DGGGIFAG-MTDKSICLWDL-DGRE-----LESWKGQ 399 (581)
Q Consensus 338 -------dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~sg-~~dg~i~vwd~-~~~~-----~~~~~~~ 399 (581)
..++.+||+.+.+.++++.-... ....+.|.. +..+=++| .-..+|..|-- +.+. +..+...
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 34799999999999999886543 345566654 44443333 33445554433 3222 1111110
Q ss_pred --------c--------cccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCe-ee-----EEe---------------cC
Q 008005 400 --------K--------TLRISDMAITDDGKRIISIC-REAAILLLDREANF-ER-----WIE---------------EE 441 (581)
Q Consensus 400 --------~--------~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~-----~~~---------------~~ 441 (581)
. ..-|++|.+|.|.++|..++ ..|.|+.||+.... .+ ++. ..
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 0 23579999999999998777 58999999998755 11 111 12
Q ss_pred CceEEEEECCCCCEEEEEe
Q 008005 442 EVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~ 460 (581)
+...-+..|.||+.|++.+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2346788888999888765
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.33 E-value=0.23 Score=50.65 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCEEEEEeCCC----CCeEEEeeCCCcEEEEEcC-----CCcEEEEEecC---CC--eEEEEEEecCCCeEEEEeCCCcE
Q 008005 318 KPVFTVSWSPN----DHQLLTCGQEEAIRRWDVN-----SGECLHVYEKT---GV--GLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 318 ~~V~~l~~sp~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~---~~--~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
..|..+.|.|- ...|++.-....|.||.+. +++.+.....+ .. --..|.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 44899999983 3345556677899999875 22322221111 11 12468899988887776665554
Q ss_pred EEEeCC--CCeEEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe------eeEEecCCceEEEEECCC
Q 008005 384 CLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREANF------ERWIEEEEVITSFSLSKD 452 (581)
Q Consensus 384 ~vwd~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~ 452 (581)
.++++. +..++.-. ...+.|.|.+|.+||++|+++-. .=.-++||-..+. ...+...+.|.++.-.-|
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 555653 33333323 33458999999999999877643 4457889876654 344455666666655443
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.24 E-value=0.00062 Score=71.24 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=77.8
Q ss_pred eecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEccc-CCeee---EEEEecCCCCCEEEEEeCC---CCCeEEEeeC
Q 008005 266 QILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKE-DGQVS---LKHRLSGHRKPVFTVSWSP---NDHQLLTCGQ 337 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~-~~~~~---~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~ 337 (581)
..++|..+.|-.++|... ...++ -.-|...||+++- .+++. .++....-...+.-+.|.| +..++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 346677888888888542 11222 2236688998752 11111 1222233344456666766 5667777777
Q ss_pred CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
+++|++.++.+... ..+..|...++.++|...|-..+.+ ++|||+.++
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFA 251 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEE
Confidence 88888877765433 3445577777777766544222211 678888888
Q ss_pred EEEcCCeEEEEE
Q 008005 418 SICREAAILLLD 429 (581)
Q Consensus 418 ~~~~dg~i~i~d 429 (581)
.++.||.+++|.
T Consensus 252 ~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 252 WAISDGSVGFYQ 263 (1283)
T ss_pred EeecCCccceee
Confidence 888888877775
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.0042 Score=55.10 Aligned_cols=138 Identities=11% Similarity=0.007 Sum_probs=72.7
Q ss_pred EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-cEEEEEecCCCeEEE-EE
Q 008005 289 SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLIS-CG 366 (581)
Q Consensus 289 sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~-~~ 366 (581)
..+.||.|.-+++.... ..+ +.-..|...-.-+ .-+..+++|+.+|.|.+|+..-. .....+......+.+ +.
T Consensus 35 ~~sa~~~v~~~~~~k~k-~s~-rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHK-ESC-RSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred cccCCcccccchhhhhh-hhh-hhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34567777777765221 111 1111122221112 23557899999999999987621 111111111222222 22
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc-ccEEEEEEeeCCCEEEEE--EcCCeEEEEECC
Q 008005 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIISI--CREAAILLLDRE 431 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~ 431 (581)
--.++.+..+++.||.|+.|++.-.+......+|. .++.....+..+..++.+ +.+..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22355678899999999999998777666666665 333333333334444444 444444444443
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=96.15 E-value=1.6 Score=43.22 Aligned_cols=275 Identities=8% Similarity=0.023 Sum_probs=132.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEccc-CCeeeEEEE-ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~-~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
...+++|.|..+.+-+|+|. +|. ||...+ +..++.... +......+.++.|.++ ..+++ +..+.|..- -+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666677664 453 444433 333433211 1112334778888653 33443 444443221 1223
Q ss_pred cEEEEEec---CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 350 ECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 350 ~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
+.-..... .......+....++ .++.++..|.|..=+-.+.............+.++.+.+++.++ ..+..|.+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v-~~g~~G~i~ 196 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPG-TAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYV-AVSSRGNFY 196 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCC-cceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEE-EEeCCceEE
Confidence 22222110 11111222222222 23344455555443323333333333334578899999987655 445556554
Q ss_pred EE-ECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc-ccceeEEEeeecCCCCcEE
Q 008005 427 LL-DREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 427 i~-d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l 502 (581)
.- |-.... .........++++.+.++++.++++. .|.+.+=..+.+ ..-.....+ ....+.+....+.+++..+
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEE
Confidence 32 222221 22223456788999999998777654 566543222332 211111111 1011123323335566655
Q ss_pred EEEeCCCcEEEEeCCCCceEEEecc---CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAG---HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+ ++.+|.|.. ....|+.-..... -....+.+.|..++ .. +..+..|.|.-|+-.
T Consensus 275 ~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~~G~il~~~~~ 331 (334)
T PRK13684 275 A-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KG-FVLGQRGVLLRYVGS 331 (334)
T ss_pred E-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCC-ce-EEECCCceEEEecCC
Confidence 4 556675553 3444544433322 22357788887666 34 456678888877643
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.13 E-value=0.019 Score=37.70 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
...|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
No 416
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.021 Score=61.58 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=73.3
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008005 412 DGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
.+..++.|+..|.+...|..+.- ..-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++.+.+..+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 34568888888888888877643 222345678999999999999999999999999999987 67777776665544
Q ss_pred EEEeeecCCCCcEEEEEeCCCc
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
.+-..-+..++..+.++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 4433333455667888888786
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.07 E-value=1 Score=45.39 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=64.3
Q ss_pred EEEeCCCCCeEEEeeCCCcEEE---EEcC-CC----cEEEEEec---C--CCeEEEEEEec-----------CCCeEEEE
Q 008005 322 TVSWSPNDHQLLTCGQEEAIRR---WDVN-SG----ECLHVYEK---T--GVGLISCGWFL-----------DGGGIFAG 377 (581)
Q Consensus 322 ~l~~sp~~~~l~s~~~dg~i~v---wd~~-~~----~~~~~~~~---~--~~~v~~~~~~~-----------~~~~l~sg 377 (581)
.++.+|++.+|+.+..+..+.+ |+.. .+ .......+ + ...|+++.|.| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577889999988877766554 5431 11 11111111 1 14677777654 34678999
Q ss_pred eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC---------CEEEEEEcCCeEEEEEC
Q 008005 378 MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG---------KRIISICREAAILLLDR 430 (581)
Q Consensus 378 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~~~dg~i~i~d~ 430 (581)
..+|.|++|...+..+... ..|..+|..+.+.... ..|..... +.|.+.|-
T Consensus 86 ~ssG~vrfyte~G~LL~~Q-~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg 145 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQ-LLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDG 145 (415)
T ss_pred ecccEEEEEeccchHHHHH-hcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEec
Confidence 9999999999765544333 3345578887775421 34444444 56666653
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.90 E-value=0.25 Score=49.67 Aligned_cols=144 Identities=14% Similarity=0.111 Sum_probs=81.5
Q ss_pred cEEEEEEcCCCCEEEEEe-----------CCC-eEEEEEccc-CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 274 EVWFLQFSHDGKYLASSS-----------KDQ-SAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
....|+|.++|+++++-. ..+ .|.+++-.+ .+.......+...-.....+++.+++ +++ +.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456889999999777642 223 676765432 23333333444444456889999888 444 444433
Q ss_pred EEEEEcCC-----CcEEEE---Eec----CCCeEEEEEEecCCCeEEEEeCC-------------------CcEEEEeCC
Q 008005 341 IRRWDVNS-----GECLHV---YEK----TGVGLISCGWFLDGGGIFAGMTD-------------------KSICLWDLD 389 (581)
Q Consensus 341 i~vwd~~~-----~~~~~~---~~~----~~~~v~~~~~~~~~~~l~sg~~d-------------------g~i~vwd~~ 389 (581)
.++.|... ++.... +.. +......+.|.|||...++-+.. |.|.-++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33435432 121111 222 12346789999998766654421 456666666
Q ss_pred CCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 390 GRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 390 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
+.....+.... .....++|+++|+.+++-.
T Consensus 173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 66655444333 2467788888887766543
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.90 E-value=0.029 Score=36.85 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=28.4
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~ 302 (581)
...|.+++|+|...+||.|+.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.88 E-value=3.5 Score=44.99 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=49.2
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 397 (581)
-.|..|.++|+|.+++..|..|.+.+.=.........+......+.|-.+.-+..+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~-------------------- 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTS-------------------- 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhh-ccC--------------------
Confidence 35888999999999999988664443322211111222222333333332222211 110
Q ss_pred cCccccEEEEEEeeC---CCEEEEEEcCCeEEEEECCCC
Q 008005 398 GQKTLRISDMAITDD---GKRIISICREAAILLLDREAN 433 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.....|..+.|+|. +..|++-+.|+++++||+...
T Consensus 144 -~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 -NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11124566666664 356666777777777776543
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.84 E-value=3.7 Score=44.90 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=127.5
Q ss_pred CcEEEEEEcCC----CCEEEEEe---CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEE--eCCC-CCeEEEeeCCCcEE
Q 008005 273 DEVWFLQFSHD----GKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS--WSPN-DHQLLTCGQEEAIR 342 (581)
Q Consensus 273 ~~V~~l~~s~~----g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~--~sp~-~~~l~s~~~dg~i~ 342 (581)
++|..++.-.. +..++||+ .||+++|....-+-.......+.| -..++.+. +.++ ..+|+.+- -+.-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceE
Confidence 46777665432 23566664 689999987532211122233444 45577777 4432 22555433 33445
Q ss_pred EEEcCCCcEEEEEe--cCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 343 RWDVNSGECLHVYE--KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
+..+... ..... +.......+..+. .++.|+=.. ...|++++-. +....|.... .++....+.+...++.+
T Consensus 432 vl~i~~e--~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~p~--~~ti~~~~~n~sqVvvA 505 (1096)
T KOG1897|consen 432 VLNISEE--VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRPPG--KITIGVVSANASQVVVA 505 (1096)
T ss_pred EEEEccc--eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccCCC--ceEEEEEeecceEEEEe
Confidence 5555322 11111 1111111122111 222322222 2346666644 3444454443 45555666666688888
Q ss_pred EcCCeEEEEECCCCe---eeEEecCCceEEEEECCC--C----CEEEEEeeCCcEEEEEecCCCceeEE--Eecccccee
Q 008005 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKD--N----KYLLVNLINQEIHLWSIESDPKLVSR--YKGHKRARF 488 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~--~----~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~ 488 (581)
+.++.+...+..... .........|.|+.++|- + +++++|..+..+.+.-.......+.. +.+..-+..
T Consensus 506 ~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRS 585 (1096)
T KOG1897|consen 506 GGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRS 585 (1096)
T ss_pred cCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchh
Confidence 888888887776655 233345677999999973 2 37888887776655544332222222 233333444
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEE--eCCCCce
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIW--HRYTGEL 521 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iw--d~~~~~~ 521 (581)
.+-.++ -.+..+|.++..||.+.-| |..+|..
T Consensus 586 Il~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 586 ILLTTF-EGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeeEEe-eccceEEEEEcCCceEEEEEEEcccceE
Confidence 444444 4457899999999988765 4455543
No 422
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.75 E-value=1.7 Score=40.30 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=150.4
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec--
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-- 397 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-- 397 (581)
-..++-.|||..-+++...+.|--.|..+|+....--+....-..+..-||+..-++-+.. .|.-.|-++.+...+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 3567778899888888888888888999998776655555666677778888776654443 4555566665555544
Q ss_pred -cCccccEEEEEEeeCCCEEEEEEc---------CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 398 -GQKTLRISDMAITDDGKRIISICR---------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 398 -~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
.+.........|.+.|+.-.++.. .+.|++|+.. .......++..|+|..-++.-.++.|..
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEeccccceEE
Confidence 233446778889999987777653 1334444433 2345678889999998888777888877
Q ss_pred EEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce-EEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL-VLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
.|..+... ..+..........+-.+.++-+..-++-...+.++.||-.+..- ...+.+....-.++.....+ ++..
T Consensus 215 idp~~~~a--ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~ 291 (353)
T COG4257 215 IDPFAGHA--EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWL 291 (353)
T ss_pred cccccCCc--ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEe
Confidence 77665422 22222222111233344467777778877788888888655432 23455555556677776666 4555
Q ss_pred EEECCCcEEEecCCcccc
Q 008005 547 SASDDRTIRIWGLDQINM 564 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~ 564 (581)
+--.-|.|.-+|.++...
T Consensus 292 sea~agai~rfdpeta~f 309 (353)
T COG4257 292 SEADAGAIGRFDPETARF 309 (353)
T ss_pred eccccCceeecCcccceE
Confidence 555556777777766553
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.73 E-value=0.43 Score=48.79 Aligned_cols=155 Identities=14% Similarity=0.233 Sum_probs=92.6
Q ss_pred cEEEEEEeeCCCEEEEEE--cCCeEEEEECCCCeeeEEecCCceEEEEECCC----CCEEEEEeeCCcEEEEEecCCC--
Q 008005 403 RISDMAITDDGKRIISIC--REAAILLLDREANFERWIEEEEVITSFSLSKD----NKYLLVNLINQEIHLWSIESDP-- 474 (581)
Q Consensus 403 ~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~----~~~l~~~~~d~~i~iwd~~~~~-- 474 (581)
++..++|....+.+++.- .+|.+++ +....++.-..|..+.|.|- ...+++......|.+|.+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kf-----Gds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e 95 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKF-----GDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE 95 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCcccc-----CCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc
Confidence 688888874443343331 2222222 11444556667999999984 3355556668899999986321
Q ss_pred --ceeEEEecccccee--EEEeeecCCCCcEEEEEeCCCcEEEEeCCC--CceEEEeccCCCCEEEEEEcCCCCcEEEEE
Q 008005 475 --KLVSRYKGHKRARF--VIRSCFGGFEQAFIASGSEDSQVYIWHRYT--GELVLALAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 475 --~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
+.+.....+-...+ .-.-|.|+|....|+.-.....-.++++.. ......++ ..+-|.|.+|.+||.+++++.
T Consensus 96 ~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 96 RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEe
Confidence 11111111111000 112356689888888777665545555543 33334443 468899999999997777777
Q ss_pred ECCCcEEEecCCccc
Q 008005 549 SDDRTIRIWGLDQIN 563 (581)
Q Consensus 549 s~Dg~I~iW~~~~~~ 563 (581)
|..=.-+|||=....
T Consensus 175 GSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 175 GSSLHSYIWDSAQKT 189 (671)
T ss_pred CCeEEEEEecCchhh
Confidence 776677889876653
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.63 E-value=2.8 Score=42.08 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=80.7
Q ss_pred CEEEEEeCCCCCeEEEee-----------CCC-cEEEEEcCC--Cc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 319 PVFTVSWSPNDHQLLTCG-----------QEE-AIRRWDVNS--GE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ ++++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356889999998777643 223 676665432 33 223443334456788888887 555555443
Q ss_pred EEEEeCCCC-----e---EEeeccC----ccccEEEEEEeeCCCEEEEEEcC-------------------CeEEEEECC
Q 008005 383 ICLWDLDGR-----E---LESWKGQ----KTLRISDMAITDDGKRIISICRE-------------------AAILLLDRE 431 (581)
Q Consensus 383 i~vwd~~~~-----~---~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d-------------------g~i~i~d~~ 431 (581)
.++.|.+.. + +..-... .......+++.|||...++.+.. +.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334455321 1 1111111 12357789999999876655521 456666766
Q ss_pred CCeeeEEec-CCceEEEEECCCCCEEEEEe
Q 008005 432 ANFERWIEE-EEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 432 ~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~ 460 (581)
+........ -.....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 655333332 33357899999998877644
No 425
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=2 Score=40.20 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=96.2
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC---eE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR---EL 393 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~ 393 (581)
.+-+..+.++ +++...+..+.-++|.|+.+.........-...-..-.|.-.|++..++..|.-+.+.|+... .+
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3446667776 457777788888999999886544333222211122334456889999887777888898543 23
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
.............++++ |++-..++.|+-+.+.|+.... ..+. .....+.++..+++..+++.. +.-+.+-|
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd 239 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVD 239 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEe
Confidence 33333333344566665 6678888899999999998876 3333 334467888888776666553 44466666
Q ss_pred ecCC
Q 008005 470 IESD 473 (581)
Q Consensus 470 ~~~~ 473 (581)
..+.
T Consensus 240 ~s~~ 243 (370)
T COG5276 240 VSGP 243 (370)
T ss_pred cCCC
Confidence 6654
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=95.57 E-value=0.9 Score=47.47 Aligned_cols=141 Identities=9% Similarity=-0.032 Sum_probs=71.5
Q ss_pred CCCeEEEeeCCC-----cEEEEEcCCCcEEEEEecCCCeE-EEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEeeccC
Q 008005 328 NDHQLLTCGQEE-----AIRRWDVNSGECLHVYEKTGVGL-ISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 328 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~ 399 (581)
++..+++||.++ .+..||..+++....-.-..... .+++ .-++...+.|+.+ ..+..||..++........
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 355666776543 46778887765433221111111 1122 2366666777754 3578888876655444433
Q ss_pred ccccEEEEEEeeCCCEEEEEEcCC---eEEEEECCCCeeeEEec---CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 400 KTLRISDMAITDDGKRIISICREA---AILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
...........-+|+..+.|+.++ .+..||.++..-..... ...-.+++ .-+++..+.| |.+.+||..++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCCC
Confidence 322222233344677777777543 46788887765221111 11111121 2245555555 35677887664
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=95.56 E-value=0.75 Score=48.07 Aligned_cols=146 Identities=8% Similarity=-0.065 Sum_probs=74.0
Q ss_pred CCCEEEEEeCCC-----eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC--CcEEEEEcCCCcEEEEE
Q 008005 283 DGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHVY 355 (581)
Q Consensus 283 ~g~~lasgs~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--g~i~vwd~~~~~~~~~~ 355 (581)
++.+++.||.++ ++..||..++ .+.....+.........+. -++...+.||.+ ..+..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 4667777653 3333332222221222222 367777788764 35788887665433221
Q ss_pred ecCCCeEEEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 356 EKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.-...........-++...+.|+.++ .+..||.++.................+..-+++..+.| |.+.+||.++
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 11111111111223566667777553 47788887766554433222122222233455555555 3567888877
Q ss_pred Ce
Q 008005 433 NF 434 (581)
Q Consensus 433 ~~ 434 (581)
..
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 65
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.53 E-value=2.2 Score=40.22 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=89.2
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE-cCCC
Q 008005 274 EVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSG 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd-~~~~ 349 (581)
.+.+.++++++..+|... ....+.++... ...... +.+ ..+..-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~--~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV--LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee--ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999777655 33345555443 322221 222 3678889999987777766666667774 3333
Q ss_pred cEE-EEEecC--CCeEEEEEEecCCCeEEEEe---CCCcEEEEeCC---CC---e---EEeeccCccccEEEEEEeeCCC
Q 008005 350 ECL-HVYEKT--GVGLISCGWFLDGGGIFAGM---TDKSICLWDLD---GR---E---LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 350 ~~~-~~~~~~--~~~v~~~~~~~~~~~l~sg~---~dg~i~vwd~~---~~---~---~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
... ...... ...|..+.++|||..++... .++.|.+--+. .+ . ...........+.++.|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 322 122222 12899999999999988765 34677776552 22 1 1122222234789999999998
Q ss_pred EEEEEEcCC
Q 008005 415 RIISICREA 423 (581)
Q Consensus 415 ~l~~~~~dg 423 (581)
.++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 777765544
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.45 E-value=1.9 Score=38.90 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=111.2
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CC--CeEEEeeCCCcEEEEEcC--CCcEEEEEe----
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-ND--HQLLTCGQEEAIRRWDVN--SGECLHVYE---- 356 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~--~~l~s~~~dg~i~vwd~~--~~~~~~~~~---- 356 (581)
++.+-=..|.|.-||+..+... ...+.+.. +.++.+-- ++ .+.+.++..-.|.-||-. .....+++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~--ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVY--RAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred EEEEEeccCceehhhhhhhheE--EEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4444445566777998754221 12222221 22333321 21 233444443345556632 222333311
Q ss_pred -cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc--------ccEEEEEEeeCCCEEEEE-EcCCeEE
Q 008005 357 -KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT--------LRISDMAITDDGKRIISI-CREAAIL 426 (581)
Q Consensus 357 -~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~i~~~~~~~~l~~~-~~dg~i~ 426 (581)
........-..+|+|++ +.|...-.=-.+....+.+..+...|. .--+.++|+.+.+.+... +.+-.|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 11334455566888887 444321111122222333333333332 123568888888777655 4456776
Q ss_pred EEE--CCCCe----eeEEe-------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008005 427 LLD--REANF----ERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 427 i~d--~~~~~----~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
-|| ..++. ...+. ..-....+++..+|++.+++-..++|...|..++ +.+..+.-.... ..++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~q--itscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQ--ITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCc--eEEEE
Confidence 777 44443 11111 1122345666778999999999999999999998 777777766554 34567
Q ss_pred ecCCCCcEEEEEe
Q 008005 494 FGGFEQAFIASGS 506 (581)
Q Consensus 494 ~~~~~~~~l~sgs 506 (581)
|..++-..+++..
T Consensus 261 FgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 261 FGGKNLDILYVTT 273 (310)
T ss_pred ecCCCccEEEEEe
Confidence 7777655555443
No 430
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=95.42 E-value=0.018 Score=49.86 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCH
Q 008005 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS 97 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~ 97 (581)
...|++||++.+|+..||.+++.+|++.+++.++.+
T Consensus 164 re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE~p 199 (199)
T PF06588_consen 164 REKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLEHP 199 (199)
T ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCCCC
Confidence 467899999999999999999999999999999853
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=2.9 Score=41.51 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=76.0
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE----EEEecCCCeEEEEEEe
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL----HVYEKTGVGLISCGWF 368 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~ 368 (581)
.|.+.=|-+...+.-.+...-....++|.++.||+|.+.||+--.+++|.+++....+.. .+.+.....|...+|.
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT 121 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence 444556655433322233333445679999999999999999999999999997433221 2223345568889998
Q ss_pred cCCCeEEEEeCCCcEEEEeC--CCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 369 LDGGGIFAGMTDKSICLWDL--DGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 369 ~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
.+ .-++.....| +-+|-. ..+.+.. ...+...|+-..|.++.+.++.++
T Consensus 122 ~s-~e~A~i~~~G-~e~y~v~pekrslRl-Vks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 122 SS-TEIAFITDQG-IEFYQVLPEKRSLRL-VKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred cC-eeEEEEecCC-eEEEEEchhhhhhhh-hhhcccCccEEEEccccceEeeec
Confidence 65 4445444433 444443 2222222 233344688888888877655444
No 432
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.09 E-value=3.1 Score=39.26 Aligned_cols=143 Identities=14% Similarity=0.096 Sum_probs=88.3
Q ss_pred CEEEEEeCCCCCeEEEee---CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe-CCCC--e
Q 008005 319 PVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD-LDGR--E 392 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd-~~~~--~ 392 (581)
.+...+++++++.++... ....+.++.. +....... ....+..-.|.+++...+....+....++. ...+ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 2234555543 33322221 233677889999976666666666666663 2222 2
Q ss_pred EEeeccCccc-cEEEEEEeeCCCEEEEEEc---CCeEEEEECCC---C-e------eeE-EecCCceEEEEECCCCCEEE
Q 008005 393 LESWKGQKTL-RISDMAITDDGKRIISICR---EAAILLLDREA---N-F------ERW-IEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 393 ~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~---~-~------~~~-~~~~~~i~~~~~sp~~~~l~ 457 (581)
.......... .|..+.++|||.+++.... ++.|.+--+.. + . ... ......++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222111 7999999999999888763 46777664332 2 1 111 12346789999999998877
Q ss_pred EEeeCCc
Q 008005 458 VNLINQE 464 (581)
Q Consensus 458 ~~~~d~~ 464 (581)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 433
>PLN02153 epithiospecifier protein
Probab=94.52 E-value=5.5 Score=39.51 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=36.3
Q ss_pred CCCeEEEEeCC-----CcEEEEeCCCCeEEeeccC-----ccccEEEEEEeeCCCEEEEEEcC-----------CeEEEE
Q 008005 370 DGGGIFAGMTD-----KSICLWDLDGRELESWKGQ-----KTLRISDMAITDDGKRIISICRE-----------AAILLL 428 (581)
Q Consensus 370 ~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-----------g~i~i~ 428 (581)
++..++.|+.+ ..+.+||+.+.+....... ...+....+..-+++..+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45566666653 3578889887665443221 11122222333455666666643 257788
Q ss_pred ECCCCe
Q 008005 429 DREANF 434 (581)
Q Consensus 429 d~~~~~ 434 (581)
|..+..
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 988766
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.32 Score=53.33 Aligned_cols=146 Identities=8% Similarity=0.020 Sum_probs=91.6
Q ss_pred cEEEEEEcCCCCEEEEE--eCCCeEEEEEcccCCee--------eEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEE
Q 008005 274 EVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQV--------SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIR 342 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasg--s~dg~i~iwd~~~~~~~--------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~ 342 (581)
+|..+...+|+...++. +.+-.|..||+.+-... ....+.........++.|+|.- ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55666667777654443 33447888998642111 1111122223346788899853 2456677889998
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec---cCccccEEEEEEeeCCCEEEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
|..+........--......++++|+|.|+.+++|-..|++.-|.........+. .....+|.+++|.....++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 8876533222111133557899999999999999999999999987543222221 1224689999999877766654
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.48 E-value=0.013 Score=57.69 Aligned_cols=240 Identities=12% Similarity=0.184 Sum_probs=133.7
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCCCCeEEeeccC
Q 008005 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~ 399 (581)
....|-|.+.-++.++.+..+..||-. ++..... ........++|..++..++ .+-..+.+.+||+.+....+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677877778888888889999843 4433333 2344566788888777654 456788999999976443333332
Q ss_pred ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEe-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCcee
Q 008005 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 477 (581)
....-.-+.|++.+..++.+...+.+.+++..+.. ....+ |...++++++.+.+..+. ++.|..+.+-...+.....
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~dcd~~L~v~~qegeta~l 194 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CDCDNTLSVTTQEGETASL 194 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cCcHHHHHHhhhccceeee
Confidence 22233337888888899999899999999987766 33333 788899999998765444 4444443333222211111
Q ss_pred EEEeccccc--eeEEEeeecCCCCcEEEEEeCCCcEEEE---eCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCC
Q 008005 478 SRYKGHKRA--RFVIRSCFGGFEQAFIASGSEDSQVYIW---HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 478 ~~~~~~~~~--~~~i~~~~~~~~~~~l~sgs~dg~I~iw---d~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
....+.... .+.+..-.|..-|..+.+.-.......| +-..+..--.++...+.+.|+.|--|| .|.-+-+-|
T Consensus 195 tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg--~i~igf~ag 272 (615)
T KOG2247|consen 195 TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--YILIGFDAG 272 (615)
T ss_pred eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccc--cccccccce
Confidence 111111111 0111111122222333222111110001 101112212455556788999998887 344555556
Q ss_pred cEEEecCCccccc
Q 008005 553 TIRIWGLDQINMK 565 (581)
Q Consensus 553 ~I~iW~~~~~~~~ 565 (581)
.|..-...+.++.
T Consensus 273 ~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 273 YIVSISAHNAELG 285 (615)
T ss_pred eEEEEeccchHHH
Confidence 6666566665543
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.41 E-value=3.2 Score=45.29 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEV 301 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~ 301 (581)
-.-.|..|.++|+|++||..|..| |.|-.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 334789999999999999988876 444444
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.40 E-value=10 Score=41.95 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=86.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeeE-EecCCceE-------------EEEECC--CCCEEEEEee----------CCcEE
Q 008005 413 GKRIISICREAAILLLDREANFERW-IEEEEVIT-------------SFSLSK--DNKYLLVNLI----------NQEIH 466 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~i~-------------~~~~sp--~~~~l~~~~~----------d~~i~ 466 (581)
+..++.++.|+.+.-.|.++++... +..++.+. .+.-.| .+..+++++. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4578889999999999999988433 22222211 111222 2345666643 57899
Q ss_pred EEEecCCCceeEEEecc-c--------cceeE------EEeeecCCCCcEEEEEe------------------CCCcEEE
Q 008005 467 LWSIESDPKLVSRYKGH-K--------RARFV------IRSCFGGFEQAFIASGS------------------EDSQVYI 513 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~-~--------~~~~~------i~~~~~~~~~~~l~sgs------------------~dg~I~i 513 (581)
-+|..++ +.+-.+... . +..+. -......+...+++.+. ..+.|.-
T Consensus 340 A~Da~TG-kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 340 AFDVNTG-ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEECCCC-cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999998 554444311 0 00000 00011122222322211 1346777
Q ss_pred EeCCCCceEEEeccCCCCEE---------EEEEcC-CC--CcEEEEEECCCcEEEecCCccccccc
Q 008005 514 WHRYTGELVLALAGHSGSVN---------CVSWNP-AN--LHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 514 wd~~~~~~~~~~~~h~~~v~---------~l~~~p-~~--~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.|.++|+..-.++.....+. -+.+.. +| ...++.++.+|.+.+.|-++++....
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 78888888776654111111 122222 34 12788999999999999999987764
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.40 E-value=0.0053 Score=60.38 Aligned_cols=148 Identities=11% Similarity=0.141 Sum_probs=107.4
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEE-EeeCCcEEEEEecCCCceeEEEec
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLV-NLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
.....|.+.+..++.++.+..+..||-...........+....++|+.++..+++ +-..+.+.+||+.+.....-.+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3445677777779999999999999977766555556666778888888776554 456789999999874222222222
Q ss_pred cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.. .-....|++....++.|...|.+.|++-.+.+.+.....|...+++++|.+.+ +.+.++.|..+.+-
T Consensus 117 ~~----s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 117 TS----SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNTLSVT 185 (615)
T ss_pred cc----hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHHHHHh
Confidence 22 12235568888889999999999999988777776666699999999999987 67777777655443
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.38 E-value=2.3 Score=45.06 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe-cCCCeEEEEEEe--cCCCeEEEEeCCCcEEEEeCC------
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLD------ 389 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~sg~~dg~i~vwd~~------ 389 (581)
...-+.-+.-++.-++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.+..+.|.++.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444444444443444579999999887544333 346789999996 588999999999999988541
Q ss_pred C-C---eE--EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 390 G-R---EL--ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 390 ~-~---~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
. . .+ .........+|.+..|.++|..++.+ ++.+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 0 11 11222333578899999999766554 456777664
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=0.42 Score=52.46 Aligned_cols=141 Identities=12% Similarity=0.052 Sum_probs=89.7
Q ss_pred CEEEEEeCCCCCeEEEe--eCCCcEEEEEcCCCcEE-----EEEe------cCCCeEEEEEEecCC-CeEEEEeCCCcEE
Q 008005 319 PVFTVSWSPNDHQLLTC--GQEEAIRRWDVNSGECL-----HVYE------KTGVGLISCGWFLDG-GGIFAGMTDKSIC 384 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~-~~l~sg~~dg~i~ 384 (581)
+|..+...+|+...++. +.+-.|..||+++-... ..+. ....-..++.|+|.- ...++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676554433 33447889998753211 1111 112345678888743 2356677888888
Q ss_pred EEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE-----ecCCceEEEEECCCCCEEEEE
Q 008005 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-----EEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 385 vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~ 459 (581)
+..+................++++|+|.|+.+++|-..|++.-|...-.....+ .....|.+++|-....++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 887754332222233344789999999999999999999999887665532111 225779999998777776653
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=5.3 Score=42.42 Aligned_cols=172 Identities=12% Similarity=0.232 Sum_probs=89.6
Q ss_pred CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE----ecCCCeEEEEEEec
Q 008005 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY----EKTGVGLISCGWFL 369 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~ 369 (581)
-.|+|++... .....+.-....+..+.|+.+. .|++...+|++.||++.. ..+..+ ......|..+.++.
T Consensus 64 ~~I~If~~sG----~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 64 PYIRIFNISG----QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred eeEEEEeccc----cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEec
Confidence 4588888752 1222222233478899999655 566678999999999853 322221 22234566666665
Q ss_pred CCCeEEEEeCCCcEEEEe-CCCCeEEeeccCccccE--EEEEEeeCCCE---EEEEEcCCeEEEEECCC--Ce-eeEEec
Q 008005 370 DGGGIFAGMTDKSICLWD-LDGRELESWKGQKTLRI--SDMAITDDGKR---IISICREAAILLLDREA--NF-ERWIEE 440 (581)
Q Consensus 370 ~~~~l~sg~~dg~i~vwd-~~~~~~~~~~~~~~~~i--~~i~~~~~~~~---l~~~~~dg~i~i~d~~~--~~-~~~~~~ 440 (581)
+| +++-..+|.+.+-+ ................. +|-...+++.. ++-....--..++-... .. ..+...
T Consensus 138 ~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 44 44444455555443 22222222222111112 22222222211 11111000001111111 11 122223
Q ss_pred CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 441 EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
...+..+.+||+.++|+.-+..|.|.+-+.+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 467888999999999999999999999888765
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=6.1 Score=42.00 Aligned_cols=196 Identities=15% Similarity=0.198 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc---CccccEEEEEEeeCCCE
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITDDGKR 415 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~i~~~~~~~~ 415 (581)
-.|+|+++ +|..+..+.-....+..+.|+.+ ..|++...+|++.+|++-+........ .....|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 45888886 46666655555558889999855 577788899999999996654433211 112245555555544
Q ss_pred EEEEEcCCeEEEEE-CCCCeeeEEec----CCceEEEEECCCC---CEEEEEeeCCcEEEEEecCCCceeEEEeccccce
Q 008005 416 IISICREAAILLLD-REANFERWIEE----EEVITSFSLSKDN---KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR 487 (581)
Q Consensus 416 l~~~~~dg~i~i~d-~~~~~~~~~~~----~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 487 (581)
+++-..+|.+.+.. ........... ...-.+....+++ ..++-....-...++...........+.. ..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~---~~ 216 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW---PN 216 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC---CC
Confidence 44444555555443 22222111110 0111222222221 11111110000111111111011111111 11
Q ss_pred eEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-CCCEEEEEEcCCC
Q 008005 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPAN 541 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~ 541 (581)
..+.-+..+|+.++|+--..+|.|.+-+.+..+....+... ..+...++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 12223334889999999999999999988877776666521 1223366776554
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.82 E-value=8.4 Score=39.01 Aligned_cols=144 Identities=8% Similarity=0.092 Sum_probs=86.7
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcE----EEEEecCCCeEEEEEEec----CCCeEEEEeCCCcEEEEeCCC--C------
Q 008005 328 NDHQLLTCGQEEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFL----DGGGIFAGMTDKSICLWDLDG--R------ 391 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~vwd~~~--~------ 391 (581)
+...|++|+..|.++||+...+.. +..-..-..+|..+..-. .....++.-.-..+.+|.+.. +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 346899999999999999865431 111123356777776432 122233334556677777621 1
Q ss_pred --eEEeeccCc-cccEEEEEEee----C-CCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeC
Q 008005 392 --ELESWKGQK-TLRISDMAITD----D-GKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 392 --~~~~~~~~~-~~~i~~i~~~~----~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
.+.....++ ......+++-| . ...+.+-+.||.+.+|+-+.-. ......---...+.+.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 111111111 11223333333 2 3567788999999999988766 4444443444567888888889999988
Q ss_pred CcEEEEEec
Q 008005 463 QEIHLWSIE 471 (581)
Q Consensus 463 ~~i~iwd~~ 471 (581)
..+..|...
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 888888763
No 444
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.80 E-value=5.8 Score=37.07 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=109.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCC--eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
-...+.|..+|.++-+.+.-| .|+.+|+.++... ....+.. .----.++.. +++...-.-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 344678878888888887666 6888998876432 2222222 1112233333 334444456688999999999998
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec-----cCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
+..+.-. ..=+.++ .|+..|+.......+.++|..+.+..... ...-..++.+.+- +|...+-.-....|.
T Consensus 123 ~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 8888654 3445666 46788888887889999998764332221 1112245667765 566666666677888
Q ss_pred EEECCCCee-eEE----------------ecCCceEEEEECCCCCEEEEEee
Q 008005 427 LLDREANFE-RWI----------------EEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 427 i~d~~~~~~-~~~----------------~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
..|..++.. ... ....-.+.++++|..+.|++.+.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 889888872 221 11345789999998877777663
No 445
>PLN02153 epithiospecifier protein
Probab=93.78 E-value=7.8 Score=38.46 Aligned_cols=149 Identities=9% Similarity=0.037 Sum_probs=72.8
Q ss_pred CCCEEEEEeCC-------CeEEEEEcccCCeeeEEEEecCCCC----CEEEEEeCCCCCeEEEeeCC-----CcEEEEEc
Q 008005 283 DGKYLASSSKD-------QSAIIWEVKEDGQVSLKHRLSGHRK----PVFTVSWSPNDHQLLTCGQE-----EAIRRWDV 346 (581)
Q Consensus 283 ~g~~lasgs~d-------g~i~iwd~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~ 346 (581)
++.+++.|+.+ ..+.+||..+. .+........... ....+.+ ++++++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH-TWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC-EEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 25778887653 3433222111000 1222232 46677777754 35788898
Q ss_pred CCCcEEEEEec-----CCCeEEEEEEecCCCeEEEEeCC-----------CcEEEEeCCCCeEEeeccCc---cccEEEE
Q 008005 347 NSGECLHVYEK-----TGVGLISCGWFLDGGGIFAGMTD-----------KSICLWDLDGRELESWKGQK---TLRISDM 407 (581)
Q Consensus 347 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~~---~~~i~~i 407 (581)
.+.+-...-.. ........+...+++.++.|+.+ ..+.+||..+.......... ..+....
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 77654321110 11111111222355666666653 24778898876655433221 1111111
Q ss_pred EEeeCCCEEEEEEc-------------CCeEEEEECCCCe
Q 008005 408 AITDDGKRIISICR-------------EAAILLLDREANF 434 (581)
Q Consensus 408 ~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 434 (581)
...-+++.++.++. ...+.+||..+..
T Consensus 189 ~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 189 FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 12235565555542 2468889988776
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.73 E-value=7.6 Score=38.17 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=56.4
Q ss_pred CCCeEEEeeCCC-----cEEEEEcCCCcEE---EEEecCCCeE--EEEEEecCCCeEEEEeC-----CCcEEEEeCCCCe
Q 008005 328 NDHQLLTCGQEE-----AIRRWDVNSGECL---HVYEKTGVGL--ISCGWFLDGGGIFAGMT-----DKSICLWDLDGRE 392 (581)
Q Consensus 328 ~~~~l~s~~~dg-----~i~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~sg~~-----dg~i~vwd~~~~~ 392 (581)
++.+++.|+.++ .+..+|+.+.+.. ..+..-..+. .+++. -++...+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456777777643 4667777665531 2221111111 12222 24556666664 2368888988766
Q ss_pred EEeeccCc-cccEEEEEEeeCCCEEEEEEcCC----eEEEEECCCCe
Q 008005 393 LESWKGQK-TLRISDMAITDDGKRIISICREA----AILLLDREANF 434 (581)
Q Consensus 393 ~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 434 (581)
........ ..+....+..-+++..+.|+.++ .+..||..+..
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 55443221 11223333445667777777653 35688888766
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=1.1 Score=44.24 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=64.5
Q ss_pred ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
...++|.++.||+|.+.+++--.+.+|.+++.........-...+......|.-.+|+.+ .-+|..+..| +-+|-...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345689999999999999999999999999985442222212222222222333333433 4455555544 55555433
Q ss_pred -CceEEEeccCCCCEEEEEEcCCCC
Q 008005 519 -GELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 519 -~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
.+.++..+.|+..|+-..|.++..
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccc
Confidence 334556677888999999999874
No 448
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.51 E-value=2.2 Score=45.20 Aligned_cols=112 Identities=13% Similarity=0.264 Sum_probs=73.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC--CCCCeEEEeeCCCcEEEEEcC---
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS--PNDHQLLTCGQEEAIRRWDVN--- 347 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~~~dg~i~vwd~~--- 347 (581)
.....+.-|.-++.-++-+....+.|||...+ .++....+ ...+.|.++.|. |+++.+++.|....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34444555555554444444567999999854 34444444 456789999996 589999999999999998532
Q ss_pred --C----CcEEEEE--ecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008005 348 --S----GECLHVY--EKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 348 --~----~~~~~~~--~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 388 (581)
. -..++.+ ..+ ..+|.+..|.++|..++.+ ++.+.++|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1223332 223 3678899999988655543 356777764
No 449
>PLN02193 nitrile-specifier protein
Probab=93.40 E-value=8.2 Score=40.24 Aligned_cols=189 Identities=12% Similarity=0.013 Sum_probs=92.0
Q ss_pred CCCeEEEeeCC-------CcEEEEEcCCCcEEEEEec--CCC--eEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 008005 328 NDHQLLTCGQE-------EAIRRWDVNSGECLHVYEK--TGV--GLISCGWFLDGGGIFAGMTD-----KSICLWDLDGR 391 (581)
Q Consensus 328 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~--~~~--~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~ 391 (581)
++..++.|+.+ ..+.+||+.+.+-...-.. ... ........-++...+.|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 35566666643 2477888877653321110 000 01111122245566666654 35888999877
Q ss_pred eEEeeccC---ccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCeeeEEecC------CceEEEEECCCCCEEE
Q 008005 392 ELESWKGQ---KTLRISDMAITDDGKRIISICRE-----AAILLLDREANFERWIEEE------EVITSFSLSKDNKYLL 457 (581)
Q Consensus 392 ~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~------~~i~~~~~sp~~~~l~ 457 (581)
+....... ...+....+..-+++..+.|+.+ ..+..||+.+..-...... ..-..++. -+++.++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyv 333 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWV 333 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEE
Confidence 66544332 11111122222355566666643 3467888877652211110 00111222 2566777
Q ss_pred EEeeC----CcEEEEEecCCCceeEEEecc---ccceeEEEeeecCCCCcEEEEEeCC--------------CcEEEEeC
Q 008005 458 VNLIN----QEIHLWSIESDPKLVSRYKGH---KRARFVIRSCFGGFEQAFIASGSED--------------SQVYIWHR 516 (581)
Q Consensus 458 ~~~~d----~~i~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~sgs~d--------------g~I~iwd~ 516 (581)
.++.+ ..+.+||+.+. .- ..+... ........++ ..++++++.|+.+ ..+.+||.
T Consensus 334 iGG~~g~~~~dv~~yD~~t~-~W-~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQD-KW-TQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EECCCCCccCceEEEECCCC-EE-EEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 76654 46889998775 22 222111 1111111122 2356677777753 24788888
Q ss_pred CCCce
Q 008005 517 YTGEL 521 (581)
Q Consensus 517 ~~~~~ 521 (581)
.+.+-
T Consensus 410 ~t~~W 414 (470)
T PLN02193 410 ETLQW 414 (470)
T ss_pred CcCEE
Confidence 77654
No 450
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.32 E-value=7.5 Score=36.88 Aligned_cols=211 Identities=10% Similarity=0.118 Sum_probs=119.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccC----CeeeEEEEecC-----CCCCEEEEEeCCCCC------------eE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQVSLKHRLSG-----HRKPVFTVSWSPNDH------------QL 332 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~-----h~~~V~~l~~sp~~~------------~l 332 (581)
--|.|+|+|.+.+-++....+...+||.... ....+.-.+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999998888888899999998621 11122233331 234577788875332 36
Q ss_pred EEeeCCCcEEEEEcCCCcE-----EEEEecC-CCe-EEEEEEec--CCCeEEEEe-CCCcEEEEeCCCCeEEee---ccC
Q 008005 333 LTCGQEEAIRRWDVNSGEC-----LHVYEKT-GVG-LISCGWFL--DGGGIFAGM-TDKSICLWDLDGRELESW---KGQ 399 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~-----~~~~~~~-~~~-v~~~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~---~~~ 399 (581)
+.+++||+|.-|...-+.. ...+... ... ...+++-. .+.+|+.+. ..++|.++|-.-..+..- ...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998533221 1222211 122 23444443 345565554 467898888643322110 000
Q ss_pred ----c--cccEEE---------EEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCC---ceEEEEECC------CCCE
Q 008005 400 ----K--TLRISD---------MAITDDGKRIISICREAAILLLDREANFERWIEEEE---VITSFSLSK------DNKY 455 (581)
Q Consensus 400 ----~--~~~i~~---------i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~i~~~~~sp------~~~~ 455 (581)
. ...|.. ..-.++.+.=+.+..-|.|-+||......+...... ....++..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 001111 111122222223333478999999888755554443 345566655 5677
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
|+-...||+|..||..++ ..+-.+....+
T Consensus 264 LVGNFGDG~InaFD~~sG-~~~g~L~~~~G 292 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-AQLGQLLDPDN 292 (336)
T ss_pred EEeecCCceeEEecCCCC-ceeeeecCCCC
Confidence 777777999999999877 55555554443
No 451
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.18 E-value=9.3 Score=37.54 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=51.7
Q ss_pred CCCeEEEEeCCC-----cEEEEeCCCCeE----EeeccCccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCCCee
Q 008005 370 DGGGIFAGMTDK-----SICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANFE 435 (581)
Q Consensus 370 ~~~~l~sg~~dg-----~i~vwd~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~ 435 (581)
++..++.|+.++ .+..+|+.+... ..........-...+..-+++..+.|+. ...+..||+.+..-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 455666676543 566777765543 1111111111111222235566666654 24688899887662
Q ss_pred eEEe---cCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCC
Q 008005 436 RWIE---EEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESD 473 (581)
Q Consensus 436 ~~~~---~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~ 473 (581)
.... ........+..-++++.+.|+.++ .+.+||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2111 111222222233567777776653 3567887764
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=6 Score=35.17 Aligned_cols=175 Identities=12% Similarity=0.036 Sum_probs=87.8
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEE-EEcCCeEEEEECCCCe-eeEEecCCceE
Q 008005 370 DGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS-ICREAAILLLDREANF-ERWIEEEEVIT 445 (581)
Q Consensus 370 ~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~~~i~ 445 (581)
++..+.+.+. ...|++||+.+++...........+-.=-+..-+..+.. .-.+|.-..+|.++-+ ......++.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 4555555544 347999999976654433222111211111222333333 3457777888877655 23333333334
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 446 SFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
.++. |+..|+.+.....++.-|..+-. ....++.+.. +..+.-.- --+|.+.|-.=.+..|...|..+|+.+
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE-~VdG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELE-WVDGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--ccccccee-eeccEEEEeeeeecceEEEcCCCCcEE
Confidence 4443 45556655545556655554421 1111111111 11111111 114455555555555666667777665
Q ss_pred EEec------------cCCCCEEEEEEcCCCCcEEEEEE
Q 008005 523 LALA------------GHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 523 ~~~~------------~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
..+. .|....+.+++.|++.++++||-
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 5442 34567889999998866777763
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.09 E-value=0.93 Score=45.49 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=80.9
Q ss_pred EEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCC-------EEEEEeeCCcEEEEEecCCCceeEEEecccc-cee
Q 008005 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-------YLLVNLINQEIHLWSIESDPKLVSRYKGHKR-ARF 488 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~ 488 (581)
+.....++-.|++.+. ..+..+.. + -+.|.|+.+ .-++|-++..|.-.|.+-....+........ ..+
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn 563 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKN 563 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccc
Confidence 4445567777777776 23333333 3 566666432 2345666777766676544322222111110 011
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
...+.. .....++|++|..|-|++||.-.-+....+++-...|..+..+.+|..+|+||- ..+.+-|+.
T Consensus 564 ~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 564 KFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred cccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 111111 335569999999999999996555555667777889999999999966666663 356666654
No 454
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.76 E-value=11 Score=37.37 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCCeEEEEeCC-----------CcEEEEeCCCCeEEeeccCccccEE-EEEE-eeCCCEEEEEEcC
Q 008005 370 DGGGIFAGMTD-----------KSICLWDLDGRELESWKGQKTLRIS-DMAI-TDDGKRIISICRE 422 (581)
Q Consensus 370 ~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~-~i~~-~~~~~~l~~~~~d 422 (581)
++...+.|+.+ ..+..||..+............... ..+. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666677653 2477788877665544311111111 1122 3467777777653
No 455
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.39 E-value=9.4 Score=35.57 Aligned_cols=237 Identities=12% Similarity=0.047 Sum_probs=139.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.-..++-+|||..-.++...+.|--.|..++. ....-.+....-..|..-||+..-++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGE---VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCc---eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 44567788899888888777777767776652 222222333344567777888766654433 45555555544322
Q ss_pred ---EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 354 ---VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 354 ---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
..+..........|.+.|+.-+++.. |.---.|...+.+..+..........|+..|+|..-++.-.++.|...|.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 11233556777889999988888753 22222233344444444444556788999999999888888888888887
Q ss_pred CCCeeeEEec----CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEe
Q 008005 431 EANFERWIEE----EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 431 ~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
.......+.. ......+-.+|.++.-++....+.+..||-....-....+.+.....+.+.. ...+..-.+--
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grVW~sea 294 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRVWLSEA 294 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcEEeecc
Confidence 7765222222 2234455667778877777777888888876643223333343333333332 23333333333
Q ss_pred CCCcEEEEeCCC
Q 008005 507 EDSQVYIWHRYT 518 (581)
Q Consensus 507 ~dg~I~iwd~~~ 518 (581)
..|.|.-+|-++
T Consensus 295 ~agai~rfdpet 306 (353)
T COG4257 295 DAGAIGRFDPET 306 (353)
T ss_pred ccCceeecCccc
Confidence 445555566443
No 456
>PLN02193 nitrile-specifier protein
Probab=92.14 E-value=17 Score=37.95 Aligned_cols=106 Identities=8% Similarity=0.026 Sum_probs=56.6
Q ss_pred CCCeEEEeeCC-----CcEEEEEcCCCcEEEEEec---CC-CeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCeE
Q 008005 328 NDHQLLTCGQE-----EAIRRWDVNSGECLHVYEK---TG-VGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGREL 393 (581)
Q Consensus 328 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~ 393 (581)
++.+.+.|+.+ ..+.+||+.+.+-...-.. .. ..-.+++ .-++..++.|+.++ .+..||+.+...
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 46677777765 3588889887654332111 11 1111222 23455666666543 467888877665
Q ss_pred EeeccCc---cccEEEEEEeeCCCEEEEEEcC----CeEEEEECCCCe
Q 008005 394 ESWKGQK---TLRISDMAITDDGKRIISICRE----AAILLLDREANF 434 (581)
Q Consensus 394 ~~~~~~~---~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 434 (581)
....... ..+....+..-+++.++.++.+ ..+.+||+.+..
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 4433211 1111111222356677776654 468999998876
No 457
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.92 E-value=0.79 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCEEEEEeCCCC---CeEEEeeCCCcEEEEEcCC
Q 008005 318 KPVFTVSWSPND---HQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 318 ~~V~~l~~sp~~---~~l~s~~~dg~i~vwd~~~ 348 (581)
++|.++.|+|++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4888888889999999985
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.87 E-value=8.7 Score=41.37 Aligned_cols=145 Identities=8% Similarity=0.104 Sum_probs=88.6
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeE---EEEe----------------cCCCCCEEEEEeCC--CCCeEEEeeCCCcEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSL---KHRL----------------SGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~---~~~~----------------~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
..++++|. .+.|.||+...-..... ...+ ......|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 67899999863222110 0000 00122355555443 556889999999999
Q ss_pred EEEcCC-------C----c---------EEEEEecCCCeEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCC--e-EEeec
Q 008005 343 RWDVNS-------G----E---------CLHVYEKTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLDGR--E-LESWK 397 (581)
Q Consensus 343 vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~--~-~~~~~ 397 (581)
+|.+++ . + +...+ .-...+++++++ ...+.||+++....|.||-.... . .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997631 1 0 11111 124578899988 77778888888888888765321 1 11111
Q ss_pred cCccccEEEEEEeeCC---C---EEEEEEcCCeEEEEEC
Q 008005 398 GQKTLRISDMAITDDG---K---RIISICREAAILLLDR 430 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~---~---~l~~~~~dg~i~i~d~ 430 (581)
..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1234478899998754 2 7888899999988877
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.74 E-value=0.66 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.1
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCeEEEEEccc
Q 008005 273 DEVWFLQFSHDG---KYLASSSKDQSAIIWEVKE 303 (581)
Q Consensus 273 ~~V~~l~~s~~g---~~lasgs~dg~i~iwd~~~ 303 (581)
++|.++.|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 4888888889999999974
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.66 E-value=4.3 Score=41.04 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=91.3
Q ss_pred CCCeEEE-eeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-------CeEEEEeCCCcEEEEeCC--CCeEEeec
Q 008005 328 NDHQLLT-CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-------GGIFAGMTDKSICLWDLD--GRELESWK 397 (581)
Q Consensus 328 ~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~sg~~dg~i~vwd~~--~~~~~~~~ 397 (581)
|..+|+. ++....+.-.|++.|+.+.....+... -+.|.|+. ..-++|-.+..|.-.|.+ +.++....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4455444 444556778899999999988887655 46677743 234556667777766764 32322211
Q ss_pred --cC-ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 398 --GQ-KTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 398 --~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.. .....++..-.. ..++++++..|.|++||.-... .........|..+..+.+|+++++.+ ...+.+.|++
T Consensus 556 sKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11 111233333333 4489999999999999976544 34445677899999999999998876 5667777764
No 461
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.54 E-value=17 Score=36.68 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=26.8
Q ss_pred CCCeEEEEeCC-----------CcEEEEeCCCCeEEeeccCccccEE-EEEEe-eCCCEEEEEEcC
Q 008005 370 DGGGIFAGMTD-----------KSICLWDLDGRELESWKGQKTLRIS-DMAIT-DDGKRIISICRE 422 (581)
Q Consensus 370 ~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~l~~~~~d 422 (581)
++...+.|+.+ ..+..||..+............... ..+.. -+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45566666543 2477888877665554321111111 12222 466667776643
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.14 E-value=4 Score=37.86 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=85.4
Q ss_pred EEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC---CeEEEEECCC-C-eeeE------EecCCceEEEEECC
Q 008005 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE---AAILLLDREA-N-FERW------IEEEEVITSFSLSK 451 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~i~d~~~-~-~~~~------~~~~~~i~~~~~sp 451 (581)
-.+||+.+++..........-...-.+.+||+.+.+|+.. ..+++++... . ...+ .....+-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3478888777766555444445556678999999988752 3578888654 1 1111 33445556677778
Q ss_pred CCCEEEEEeeCC-cEEEEEecCC-CceeEE-Eecc---ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 452 DNKYLLVNLINQ-EIHLWSIESD-PKLVSR-YKGH---KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 452 ~~~~l~~~~~d~-~i~iwd~~~~-~~~~~~-~~~~---~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
||+.|++|+... ...+|.-... ...... +... ......--..+..|+|++++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999998864 3445554221 111111 1110 11111122344578999998888765 56688888777766
Q ss_pred cc
Q 008005 526 AG 527 (581)
Q Consensus 526 ~~ 527 (581)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 463
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.76 E-value=9.8 Score=39.07 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.5
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
..|.++...+..+.+++.+.++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34888999998899999999999999999753
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.67 E-value=1.5 Score=40.28 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=49.3
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe-------c-------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL-------A-------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..++.++++.+.+|.+++||+.+++.+..- . .....|..+..+.+| .-+++-+ +|..+.|+.+-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 457889999999999999999988765322 1 245678899999888 5666665 57888888764
Q ss_pred c
Q 008005 562 I 562 (581)
Q Consensus 562 ~ 562 (581)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 465
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=90.26 E-value=0.41 Score=35.51 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCccC
Q 008005 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (581)
Q Consensus 65 e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~ 95 (581)
=++.||..||+=+||+.|+.+|+.|+|.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 4688999999999999999999999998754
No 466
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.15 E-value=22 Score=35.76 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCCEEEEEe-CCCeEEEEEccc-CCeeeEEEEecCC-CCCEEEEEeCCCCCeEEEeeCCC-----------cEEEEEcCC
Q 008005 283 DGKYLASSS-KDQSAIIWEVKE-DGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQEE-----------AIRRWDVNS 348 (581)
Q Consensus 283 ~g~~lasgs-~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~dg-----------~i~vwd~~~ 348 (581)
++++.+.|+ .+..+.++|+.. .+.+.....+... ......+. -++.+.+.|+... .+..||..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 445444444 344566777653 2234333322211 11112222 2566777776542 477788876
Q ss_pred CcEEEEEecCCCeE--EEEEEecCCCeEEEEeCC
Q 008005 349 GECLHVYEKTGVGL--ISCGWFLDGGGIFAGMTD 380 (581)
Q Consensus 349 ~~~~~~~~~~~~~v--~~~~~~~~~~~l~sg~~d 380 (581)
.+-...-....... .++....++...+.|+.+
T Consensus 116 n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 116 NSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 65433211111111 112221366667777754
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.06 E-value=2.5 Score=38.74 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCeeeEE----------------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 408 AITDDGKRIISICREAAILLLDREANFERWI----------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.+..+++++++.+.+|.+++||+.+.+.... .....|..+.++.+|.-+++- .+|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 3556788999999999999999998772221 244668888888888766654 46788888865
Q ss_pred C
Q 008005 472 S 472 (581)
Q Consensus 472 ~ 472 (581)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
No 468
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.02 E-value=0.19 Score=53.56 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=52.2
Q ss_pred eEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEE-----------EcCCCCcEEEEEECCCcEEE
Q 008005 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVS-----------WNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~-----------~~p~~~~~l~s~s~Dg~I~i 556 (581)
..+.+|.+-++..++..+-.++.|++.+..+... ..+.+|...++.++ .+||| ..+++++.||.+++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGF 261 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccce
Confidence 3455666677778888888899888877654332 44556776665544 58999 79999999999999
Q ss_pred ecCC
Q 008005 557 WGLD 560 (581)
Q Consensus 557 W~~~ 560 (581)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8764
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.97 E-value=22 Score=35.41 Aligned_cols=187 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-------EEEEEEcC---CeEEEEECCCCe---
Q 008005 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-------RIISICRE---AAILLLDREANF--- 434 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~d---g~i~i~d~~~~~--- 434 (581)
.|....++....++-+.+||++++.+... ..++++.+.+-.+-. .+++..++ ..|++|.+....
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~---~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSL---PVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEee---cCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Q ss_pred -------eeEEecCCceEEEEECCCCC----EEEEEeeCCcEEEEEecCCCc------eeEEEeccccceeEEEeeecCC
Q 008005 435 -------ERWIEEEEVITSFSLSKDNK----YLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 435 -------~~~~~~~~~i~~~~~sp~~~----~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
.........+..+|+-.+.. +.++...+|.+..|.+..... +++.|..... +..|....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ----~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ----PEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-----EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc----ceEEEEec
Q ss_pred CCcEEEEEeCCCcEEEEeCC-----CCceEEEecc--CCCCEEEEEE----cCCCCcEEEEEECCCcEEEecCCcc
Q 008005 498 EQAFIASGSEDSQVYIWHRY-----TGELVLALAG--HSGSVNCVSW----NPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~-----~~~~~~~~~~--h~~~v~~l~~----~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
...+|+.+-++.-|.-|+.+ .++.+....+ ....|-.|+. ...| .+|+|.-.+++..+|+....
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EEEEEcCCCCeEEEEecCCC
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.81 E-value=38 Score=37.88 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=58.7
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCC------CeEEEeeCCCcEEEEEcCCCcEEEEEecC-
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------HQLLTCGQEEAIRRWDVNSGECLHVYEKT- 358 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 358 (581)
.++.+-..|.+..+.....++......-..-+..|.|+++.+++ ++++.++.|+++++..+....++..+...
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~ 630 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG 630 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence 34444445555555554444333332223345568899998754 57999999999999998876666655432
Q ss_pred -CCeEEEEEEec---CCC------eEEEEeCCCcEEEE
Q 008005 359 -GVGLISCGWFL---DGG------GIFAGMTDKSICLW 386 (581)
Q Consensus 359 -~~~v~~~~~~~---~~~------~l~sg~~dg~i~vw 386 (581)
..++.++.+-+ ++. +|.+|-.+|.+.-+
T Consensus 631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 33333333322 222 45567677755444
No 471
>PRK13684 Ycf48-like protein; Provisional
Probab=89.76 E-value=22 Score=35.11 Aligned_cols=150 Identities=10% Similarity=0.010 Sum_probs=78.1
Q ss_pred CCeEEEEEEecCCCeEEEEeCCCcEEE-EeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--e
Q 008005 359 GVGLISCGWFLDGGGIFAGMTDKSICL-WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--E 435 (581)
Q Consensus 359 ~~~v~~~~~~~~~~~l~sg~~dg~i~v-wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~ 435 (581)
...+.++.+.+++..+++ +..|.+.. +|-.+.............+.++.+.++++.+++ +..|.+++-....+. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 456788888888755544 45565543 232323333333344457899999999887665 456776543333333 1
Q ss_pred e-EEe---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc-cceeEEEeeecCCCCcEEEEEeCCCc
Q 008005 436 R-WIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 436 ~-~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
. ... ....+..+.+.|++..+++ +.+|.+.. ....+ +.-....... .........+ ..+++. +..+..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~-~~~~~~-~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVF-LDPEKG-FVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEE-eCCCce-EEECCCce
Confidence 1 111 1234778899988776554 44665543 33333 2222221111 1111222333 223344 45667787
Q ss_pred EEEEe
Q 008005 511 VYIWH 515 (581)
Q Consensus 511 I~iwd 515 (581)
|--|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 77765
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=10 Score=43.31 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=24.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~ 302 (581)
....++|+|.-.++|.|..+|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34568899999999999999999999764
No 473
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.99 E-value=16 Score=39.17 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=41.9
Q ss_pred EEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 404 ISDMAITDDGKRIISICREA-----AILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
-..+.|-|+|..+++...|| .|.++..+.-. .........+..++|+-....++++ ..+.+.+|-..+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 34589999999999987665 35555543322 1222334456667776655544443 367788887655
No 474
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=88.98 E-value=38 Score=36.79 Aligned_cols=282 Identities=21% Similarity=0.202 Sum_probs=134.3
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCe--EEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee------CCC
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG------QEE 339 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~------~dg 339 (581)
...+...+..+.|+|+|..++..+.++. ..+|-+...+ ....+...|....|+|++..++... .++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g------~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG------LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC------ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 3456778888999999999988774432 4445443221 2334556688889999888877621 122
Q ss_pred c-------EEEEEcCCC-cEE-----------EEEecCCCeEEEEEEecCCCeEEEEeCCCc-------EEEEeCCCCeE
Q 008005 340 A-------IRRWDVNSG-ECL-----------HVYEKTGVGLISCGWFLDGGGIFAGMTDKS-------ICLWDLDGREL 393 (581)
Q Consensus 340 ~-------i~vwd~~~~-~~~-----------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-------i~vwd~~~~~~ 393 (581)
. +.+|....+ ... .........+....+.+++..++....+.. ..++...++.+
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGEL 208 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCce
Confidence 2 334433333 111 111222345555666665666665544332 22333334444
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCC--------eEEEEECCCCeeeE-EecCC---ceEEEEE-CCCCCEEEEEe
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICREA--------AILLLDREANFERW-IEEEE---VITSFSL-SKDNKYLLVNL 460 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~-~~~~~---~i~~~~~-sp~~~~l~~~~ 460 (581)
....... ..+..+.+.++++.++..+... .+.+++.+...... ..... ....+.. -++...++++.
T Consensus 209 ~~~~~~~-~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 209 ESLTPGE-GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred EEEcCCC-ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEe
Confidence 4444433 3588888888988555544322 23444412222111 11110 0000111 12223333333
Q ss_pred e-CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE-EeC---CCcEEEEeCCCCceEEEeccCCCCEEEE
Q 008005 461 I-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS-GSE---DSQVYIWHRYTGELVLALAGHSGSVNCV 535 (581)
Q Consensus 461 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-gs~---dg~I~iwd~~~~~~~~~~~~h~~~v~~l 535 (581)
. .+...++.............+....+.... .++..++. .+. -..+++++. ++.......+...+...
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~-----~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~ 360 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFD-----VDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKV 360 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEe-----eCCCEEEEEecCCCCccceEEEcC--CCceEEeeccccccccc
Confidence 3 567777776643233333333323222221 14444333 222 236777765 33333333333444444
Q ss_pred EEcCCCCcEEEEEECCC-cEEEecCCccccc
Q 008005 536 SWNPANLHMLASASDDR-TIRIWGLDQINMK 565 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg-~I~iW~~~~~~~~ 565 (581)
.+..- ..+---+.|| +|.-|-+......
T Consensus 361 ~~~~~--e~~~~~~~dG~~i~~~l~~P~~~~ 389 (620)
T COG1506 361 KLAEP--EPVTYKSNDGETIHGWLYKPPGFD 389 (620)
T ss_pred ccCCc--eEEEEEcCCCCEEEEEEecCCCCC
Confidence 44432 3455556566 7777776654433
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.76 E-value=45 Score=37.33 Aligned_cols=172 Identities=12% Similarity=0.080 Sum_probs=100.1
Q ss_pred cEEEEEcCCCcEEEEEecCC----CeEEEEEEecCCCe--EEEEe-----------CCCcEEEEeC-CCCeEEeeccCcc
Q 008005 340 AIRRWDVNSGECLHVYEKTG----VGLISCGWFLDGGG--IFAGM-----------TDKSICLWDL-DGRELESWKGQKT 401 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~--l~sg~-----------~dg~i~vwd~-~~~~~~~~~~~~~ 401 (581)
.|++.|..+++.+..+.... ..+..+.|+..... +++|. .+|.++.|++ +.+....+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37788887777666554332 24555566553322 33332 2345677766 2233222222222
Q ss_pred ccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCcee
Q 008005 402 LRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 477 (581)
-+-.-.++.|-..++++ +....+++||+..+. .........|+++.+ .+..+++|.....+.++..+...+..
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 22233455666665544 456799999998876 112223556777776 56788888887777777776655667
Q ss_pred EEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
..+...+.+.+...+... +...+|.+..=|.+.+-.+
T Consensus 1011 ~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 777777666666555443 4455777776677766653
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.76 E-value=26 Score=34.52 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=63.4
Q ss_pred CeEEEEEEecCCCeEEEEeCCCc------EEEEeCCC--C---eE-----EeeccCc-------cccEEEEEEeeCCCEE
Q 008005 360 VGLISCGWFLDGGGIFAGMTDKS------ICLWDLDG--R---EL-----ESWKGQK-------TLRISDMAITDDGKRI 416 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~dg~------i~vwd~~~--~---~~-----~~~~~~~-------~~~i~~i~~~~~~~~l 416 (581)
+.+..+.+.+++..+++.+.+|. +..+++.. . .+ ....... .....++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677778766667777777777 65555532 1 11 0111111 1144578887888888
Q ss_pred EEEEcC------CeEEEEECCCCe-ee---------------EEecCCceEEEEECCCCCEEEEEee
Q 008005 417 ISICRE------AAILLLDREANF-ER---------------WIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 417 ~~~~~d------g~i~i~d~~~~~-~~---------------~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
++.-.+ ..|+.++..... .. ....+....+++++|+|+.|+++..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 877777 789999876332 11 1223456889999999997777654
No 477
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=15 Score=41.94 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCC-CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
......++|+|.-.+++.+..+|.|+++-...-+......... ..+..+.+-...........+..+.+|.........
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 3445678999999999999999999999754322221111111 012222222222233344445556666553222111
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008005 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
... .+.+....+--.+ ..+ ..+.+++||..-.
T Consensus 115 ~~~----~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 115 LKQ----EITSFVTDPPPDW-LIG-ENGLVKVSDVLRH 146 (993)
T ss_pred cCC----cceeccCCCCcch-hcc-cCceeeEeeechh
Confidence 111 2222222222223 344 7777787776543
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=8.2 Score=39.25 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.2
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
.|..+..++.|..++-+|.+|.+..+=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788889999999999998765543
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.68 E-value=27 Score=34.66 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCeEEeeccCcc-ccEEEEEEeeCCCEEEEEEc
Q 008005 381 KSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIISICR 421 (581)
Q Consensus 381 g~i~vwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~ 421 (581)
..+..||..+........... .........-+++..+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889987766554433221 11122223346667777764
No 480
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.48 E-value=29 Score=37.41 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=25.2
Q ss_pred CCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008005 358 TGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 388 (581)
-..+|...+|+.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3667889999999998888888888888764
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.43 E-value=13 Score=30.68 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCe--------EEeeccCccccEEEEEEee----CCCEEEEEEcCCeEEEEECCCC
Q 008005 366 GWFLDGGGIFAGMTDKSICLWDLDGRE--------LESWKGQKTLRISDMAITD----DGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 366 ~~~~~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~i~~~~----~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.|......|++++.-|.|.+++..... ........ ..|++++-.+ ++.-++..+....+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 455555678888888899999875322 11222222 2577776554 2334445556678999999887
Q ss_pred e-eeEEecCCceEEEEECC----CCCEEEEEeeCCcEEEEEecC
Q 008005 434 F-ERWIEEEEVITSFSLSK----DNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 434 ~-~~~~~~~~~i~~~~~sp----~~~~l~~~~~d~~i~iwd~~~ 472 (581)
. .-+......+.++.+-. +...+++| .+..|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 7 33334456666666532 23344443 355666666544
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.02 E-value=6.1 Score=42.51 Aligned_cols=113 Identities=6% Similarity=0.127 Sum_probs=73.6
Q ss_pred EEEEEEcC--CCCEEEEEeCCCeEEEEEccc-------C----C------eeeEEEEecCCCCCEEEEEeC--CCCCeEE
Q 008005 275 VWFLQFSH--DGKYLASSSKDQSAIIWEVKE-------D----G------QVSLKHRLSGHRKPVFTVSWS--PNDHQLL 333 (581)
Q Consensus 275 V~~l~~s~--~g~~lasgs~dg~i~iwd~~~-------~----~------~~~~~~~~~~h~~~V~~l~~s--p~~~~l~ 333 (581)
|+.|.... +...|+.|..||.|.+|.++. . . .+.+...+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44554433 456899999999999997631 0 0 011111222 23468999998 7788889
Q ss_pred EeeCCCcEEEEEcCCC--cEEE-EEecCCCeEEEEEEecCC---C---eEEEEeCCCcEEEEeC
Q 008005 334 TCGQEEAIRRWDVNSG--ECLH-VYEKTGVGLISCGWFLDG---G---GIFAGMTDKSICLWDL 388 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~--~~~~-~~~~~~~~v~~~~~~~~~---~---~l~sg~~dg~i~vwd~ 388 (581)
+++....|.||-.... +... .-..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888865432 1111 111245678889998743 2 6788889999998887
No 483
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.84 E-value=43 Score=35.96 Aligned_cols=159 Identities=12% Similarity=0.151 Sum_probs=84.8
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE---Ee--cC------CceEEEEECCCCCEEEEEee-CC---cE
Q 008005 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERW---IE--EE------EVITSFSLSKDNKYLLVNLI-NQ---EI 465 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~--~~------~~i~~~~~sp~~~~l~~~~~-d~---~i 465 (581)
...+..+.+.++++.+++...+|.|.+||........ .. +. .-|..........++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 3478999999999999999999999999993322111 11 11 11111211122345555444 32 46
Q ss_pred EEEEecCCCceeEEEec---cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-----C-CCEEEEE
Q 008005 466 HLWSIESDPKLVSRYKG---HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-----S-GSVNCVS 536 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-----~-~~v~~l~ 536 (581)
+++.+......+..+.. +.........|+ ..|.+..- .++.|.+|++.+.+...++.-. . ..+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y--~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCY--QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEE--eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 77777222233333321 111111112222 24443333 6779999999887766655422 1 2334443
Q ss_pred -EcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 537 -WNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 537 -~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+|+ ++|.+ .+++|++.|+.-..+...
T Consensus 285 ~~s~n--RvLLs--~~nkIyLld~~~~siLse 312 (670)
T PF10395_consen 285 PPSPN--RVLLS--VNNKIYLLDLKFESILSE 312 (670)
T ss_pred cCCCC--eEEEE--cCCEEEEEeehhhhhhhh
Confidence 3332 45554 456899999876555433
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.77 E-value=2.8 Score=44.72 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=45.8
Q ss_pred CCCCEEEEEeCCCeEEEEEccc----CCeeeEEEE--------ec-----------CCCCCEEEEEeCC----CCCeEEE
Q 008005 282 HDGKYLASSSKDQSAIIWEVKE----DGQVSLKHR--------LS-----------GHRKPVFTVSWSP----NDHQLLT 334 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~----~~~~~~~~~--------~~-----------~h~~~V~~l~~sp----~~~~l~s 334 (581)
++...++.+..||.+....... +..+..... +. .....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566778888888887777653 111111110 00 1123456666666 7789999
Q ss_pred eeCCCcEEEEEcCCCcEEEEEec
Q 008005 335 CGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
.+.|+++|+||+.+++++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999776543
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.77 E-value=19 Score=32.47 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=60.9
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---C---cEEEE-EcCCC----cEEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---E---AIRRW-DVNSG----ECLH 353 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g---~i~vw-d~~~~----~~~~ 353 (581)
+.|..+...+.|.+|++.. .......++..- +.|..+.++..|+||+|--.+ . .+|+| |++.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~-~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQ-EECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEccc-CCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3444445677899999983 333455555543 789999999999999997432 2 56665 33211 1111
Q ss_pred -EEec---------------------CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008005 354 -VYEK---------------------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 354 -~~~~---------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 389 (581)
.+-+ -...+.+++..|-...|+.|+. +.+.+|.+.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~ 163 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLK 163 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence 1111 1234556666675555666644 567888764
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.24 E-value=32 Score=33.86 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=65.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCe------EEEEEcccC----CeeeEE--EEecCCCC--------CEEEEEeCCCCC
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQS------AIIWEVKED----GQVSLK--HRLSGHRK--------PVFTVSWSPNDH 330 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~------i~iwd~~~~----~~~~~~--~~~~~h~~--------~V~~l~~sp~~~ 330 (581)
.-+.+..+.+.+++..+++.+.+|. +..+++... ..+... ..+..-.+ ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3466778899865556666666776 555555431 111111 11222211 233678877888
Q ss_pred eEEEeeCC------CcEEEEEcCCCcEEEEEe---------------cCCCeEEEEEEecCCCeEEEEeC
Q 008005 331 QLLTCGQE------EAIRRWDVNSGECLHVYE---------------KTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 331 ~l~s~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
++++.-.+ ..|..++.. |+....+. ......-+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88876666 678888866 66544441 12456788999999997777654
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=9.4 Score=43.38 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=94.7
Q ss_pred ccccccceeecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEe--------CCC
Q 008005 258 NRIPSQTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW--------SPN 328 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~ 328 (581)
..+|...+..+. |...-+.+-+-|. ++.-+| -|+.+.+|+.++++.. ..+.+-...|..+.. .|.
T Consensus 65 ~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred ccCCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhh
Confidence 445666665555 4333334444443 333333 4888999999987554 334444455555543 222
Q ss_pred CCeEEEeeCCCcEEEEEcCC----CcE-----EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC--C--C----C
Q 008005 329 DHQLLTCGQEEAIRRWDVNS----GEC-----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL--D--G----R 391 (581)
Q Consensus 329 ~~~l~s~~~dg~i~vwd~~~----~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~--~--~----~ 391 (581)
=++++..+.--.|.++-+.- +.. ...+......|.|+....+|+.++ ++.||. +|.+ . . .
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~--lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGN--LYELVYQAEDGWFGS 215 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEE-eecCCC--EEEEEEeccCchhhc
Confidence 24444444444566654422 111 122333456788888666665555 556664 4443 1 0 0
Q ss_pred ---e--------------EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 392 ---E--------------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 392 ---~--------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
+ +......+..+|..+++...-..+.+-+..++|.+||+..
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 1111223355899999998888999999999999999987
No 488
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=86.28 E-value=70 Score=36.87 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=20.2
Q ss_pred ecccccCcEEEEEEcC--CCC-EE----EEEeCCCeEEEEEcc
Q 008005 267 ILEAHSDEVWFLQFSH--DGK-YL----ASSSKDQSAIIWEVK 302 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~--~g~-~l----asgs~dg~i~iwd~~ 302 (581)
...||...|.|....- ++. +| ++.+.||.+.|=|.+
T Consensus 342 mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred ccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 3457888877765432 111 22 234568888776653
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.46 E-value=53 Score=36.72 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEc--ccCCeeeEEEEec
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEV--KEDGQVSLKHRLS 314 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~--~~~~~~~~~~~~~ 314 (581)
++.+.....+..........+.-|...+..-.--..+...++|+| +...||.....|.-.||++ .............
T Consensus 111 I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~ 190 (765)
T PF10214_consen 111 ILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR 190 (765)
T ss_pred EEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc
Q ss_pred CCCCCE------E----EEEeCCCCCeEEEeeCCCcEEEEEcCCCcE--EEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 315 GHRKPV------F----TVSWSPNDHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 315 ~h~~~V------~----~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
.+.+.| . .+.|.++-..|+.++.. .+.++|+++... ..........|..+.-++.....+.--....
T Consensus 191 ~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~e 269 (765)
T PF10214_consen 191 NISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKE 269 (765)
T ss_pred CCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCe
Q ss_pred EEEEeCCC-----CeEEeeccCccccEEEEEEeeCCC------EEEEEEcCCeEEEEEC
Q 008005 383 ICLWDLDG-----RELESWKGQKTLRISDMAITDDGK------RIISICREAAILLLDR 430 (581)
Q Consensus 383 i~vwd~~~-----~~~~~~~~~~~~~i~~i~~~~~~~------~l~~~~~dg~i~i~d~ 430 (581)
|...++.. ..+..+.......=..+.++.... .++..-....|.+|..
T Consensus 270 iiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 270 IIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.46 E-value=17 Score=34.64 Aligned_cols=93 Identities=10% Similarity=0.181 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe------CCCcEEEEeCCCCeEEeeccCc----cccEEEEE
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM------TDKSICLWDLDGRELESWKGQK----TLRISDMA 408 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~----~~~i~~i~ 408 (581)
..|++||..+.+-...-..-.+.|.++.|..+.+.++.|. ....+..||..+.......... .+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999888776555555678899999996666666654 3457889999887776555522 35677776
Q ss_pred Eee-CCCEEE-EEE-cC--CeEEEEECC
Q 008005 409 ITD-DGKRII-SIC-RE--AAILLLDRE 431 (581)
Q Consensus 409 ~~~-~~~~l~-~~~-~d--g~i~i~d~~ 431 (581)
+.. |+..+. +|. .+ ..|..||-.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCC
Confidence 643 343343 332 23 345556544
No 491
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.33 E-value=20 Score=29.65 Aligned_cols=110 Identities=9% Similarity=0.126 Sum_probs=64.7
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCe---------eeEEecCCceEEEEECC-----CCCEEEEEeeCCcEEEEEecCC
Q 008005 408 AITDDGKRIISICREAAILLLDREANF---------ERWIEEEEVITSFSLSK-----DNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.|......|++++..|.|.+++..... ..++.....|++++--+ +...|++|+ ...+..||+..+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 455555678888899999999865432 46667777888886544 344566655 778999999886
Q ss_pred CceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCce
Q 008005 474 PKLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
.....+ .-...+..+.+-.... ...++++| .+..|.-||..-.+.
T Consensus 84 ~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred chhhhh--hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 443322 2222223332222222 34444444 455677777544333
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.23 E-value=5.5 Score=39.65 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=97.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC----CEE-EEEeCCCCCeEEEeeCCC
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----PVF-TVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~----~V~-~l~~sp~~~~l~s~~~dg 339 (581)
+..+..-...|..+-..|||+.|..-+. ..+.|+++.+. .+...+......+ .|+ .+..-..|..+++++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r-~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKR-SLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeeccc-ccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 3445556677888889999997776554 57888888743 2222111121111 122 122223466788888999
Q ss_pred cEEEE-EcCCCc-----EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC
Q 008005 340 AIRRW-DVNSGE-----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 340 ~i~vw-d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
-|.-| |+..+. .++.++-...++..+.-..+.+-+++-+.+|++.++.....+..-+...-. .+.-++++|.+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCccc
Confidence 88877 554332 223333333444444333344567888888998887765444333333222 57778999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe
Q 008005 414 KRIISICREAAILLLDREANF 434 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.++++- ..|.++++.+++..
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred chheee-cCCceEEEEecCCC
Confidence 888764 45778888776643
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.79 E-value=34 Score=32.66 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE------cCCeEEEEECCCCeeeEEec------CCceEEE
Q 008005 380 DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC------REAAILLLDREANFERWIEE------EEVITSF 447 (581)
Q Consensus 380 dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~------~~~i~~~ 447 (581)
-..|++||..+.+.......-.+.|+++.|..+.+.++.|. ....+..||..+..-..... .++++.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 34699999998888777777777899999997766666664 35578889998877322222 4677777
Q ss_pred EECC-CCC-EEEEEe-eCC--cEEEEEe
Q 008005 448 SLSK-DNK-YLLVNL-INQ--EIHLWSI 470 (581)
Q Consensus 448 ~~sp-~~~-~l~~~~-~d~--~i~iwd~ 470 (581)
.+.. |+. +.+.|. .++ .|..||=
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 7643 443 343443 233 3555543
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=10 Score=43.14 Aligned_cols=137 Identities=12% Similarity=0.227 Sum_probs=85.5
Q ss_pred eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEE--------ecCCCeEEEEeCCCcEEEEeCC----CCeEEeec-----c
Q 008005 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--------FLDGGGIFAGMTDKSICLWDLD----GRELESWK-----G 398 (581)
Q Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~-----~ 398 (581)
+-|+.+.+|+.+++.....+.+....|..+.. -|.=++++....--.|.++-+. +.....+. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35778999999998777777766666665543 2233445554455556666542 11111111 1
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCCeEEE--EECCCCe----------------------eeEE-ecCCceEEEEECCCC
Q 008005 399 QKTLRISDMAITDDGKRIISICREAAILL--LDREANF----------------------ERWI-EEEEVITSFSLSKDN 453 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i--~d~~~~~----------------------~~~~-~~~~~i~~~~~sp~~ 453 (581)
.....|+++....+|+.+.+| .||.|+= |....+- .... .+..+|..+.+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 223468899988888776665 5554432 2222110 0111 345689999999988
Q ss_pred CEEEEEeeCCcEEEEEecCC
Q 008005 454 KYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~ 473 (581)
..+++-+..+.|.+||+...
T Consensus 255 ~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ceeeeeccCceEEEEEccCC
Confidence 99999999999999999873
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.47 E-value=31 Score=34.60 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=93.8
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEec-CC----ceE-EEEECCCCCEEEEEeeCCcEEEE-Ee
Q 008005 401 TLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEE-EE----VIT-SFSLSKDNKYLLVNLINQEIHLW-SI 470 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~-~~----~i~-~~~~sp~~~~l~~~~~d~~i~iw-d~ 470 (581)
...+..+-..|||+.+..-+. ..+.++++.+.. .+.... .+ .|+ ++..-..|.-++++..||.|.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 346777889999999888766 778888877655 111111 11 122 12223356678888889988766 55
Q ss_pred cCCCce----eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 471 ESDPKL----VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 471 ~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
+....+ ++.++-.... +....-..+.+-+++-+.+|++.++.....+.+-.-.. -..+.-++++|.+ .+++
T Consensus 299 r~~~~p~l~h~R~f~l~pa~---~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~-~~Ll 373 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAE---VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQ-AYLL 373 (733)
T ss_pred ecCCCCcceeeeccccCccc---ceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCccc-chhe
Confidence 543221 1222222122 22222133455678888899998887555444432222 2356778999998 4665
Q ss_pred EEECCCcEEEecCCccccc
Q 008005 547 SASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~ 565 (581)
+- +.|.|+++.+++....
T Consensus 374 ~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 374 SE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ee-cCCceEEEEecCCCCC
Confidence 53 4578999999876543
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=26 Score=35.86 Aligned_cols=25 Identities=4% Similarity=-0.137 Sum_probs=17.0
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEE
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~v 385 (581)
.|..+..++.|..++..+.+|.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEE
Confidence 4556667777777777777775544
No 497
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.17 E-value=35 Score=33.64 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEE-------ecCCceEEEEECCC---CCEEEEEeeC---------
Q 008005 403 RISDMAITDDGKRIISICREAAILLLDREANF-ERWI-------EEEEVITSFSLSKD---NKYLLVNLIN--------- 462 (581)
Q Consensus 403 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~sp~---~~~l~~~~~d--------- 462 (581)
..+.|+|.|||+.++ +...|.|++++..... .... ........++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478899999987766 4669999999933332 1111 22345789999994 3444444431
Q ss_pred CcEEEEEecCCC-------ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC
Q 008005 463 QEIHLWSIESDP-------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (581)
Q Consensus 463 ~~i~iwd~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg 509 (581)
..|.-|...... .++..+............+.+.|+|.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 245545554331 11222222111222233344488887777666543
No 498
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=80 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=42.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEE------e--cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR------L--SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 280 ~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~------~--~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+..-|+.+..|+.+|.+.+|.+.+......... + .-+..+|..+...+.-.++++ -.|+.|.++++.+-+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcccc
Confidence 344677899999999999999875422111111 0 112456666666654444443 3466788888766544
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.06 E-value=6.1 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=22.3
Q ss_pred eccCCCCEEEEEEcCCCCcEEEEEECC--CcEEEe
Q 008005 525 LAGHSGSVNCVSWNPANLHMLASASDD--RTIRIW 557 (581)
Q Consensus 525 ~~~h~~~v~~l~~~p~~~~~l~s~s~D--g~I~iW 557 (581)
+....+.-....|+|||..++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999996666676676 777766
No 500
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.92 E-value=57 Score=33.06 Aligned_cols=146 Identities=10% Similarity=-0.007 Sum_probs=77.6
Q ss_pred EEEEEeeCCCEEEEEEcCCeEEEEECCCC--eeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-c---eeE
Q 008005 405 SDMAITDDGKRIISICREAAILLLDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-K---LVS 478 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~---~~~ 478 (581)
..+..++++..++.+.....++-||.... ..........++++.+.+++..++++ ..|.+.. ....+. . ...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccccee
Confidence 34556677776666554444444554332 23334455678899999999888766 4555433 222221 0 111
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec---cCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA---GHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
....... ...+....+.+++.. +.++.+|.+.... ..|+.-.... .-....+.+.|.+++ + ....+.+|.|.
T Consensus 320 ~~~~~~~-~~~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~-g~~~G~~G~il 394 (398)
T PLN00033 320 EADIKSR-GFGILDVGYRSKKEA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK-K-GFVLGNDGVLL 394 (398)
T ss_pred ecccCCC-CcceEEEEEcCCCcE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC-c-eEEEeCCcEEE
Confidence 1111111 122333333445554 5556778776664 4454433332 234568899998766 3 44556788876
Q ss_pred Ee
Q 008005 556 IW 557 (581)
Q Consensus 556 iW 557 (581)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
Done!