Query 008005
Match_columns 581
No_of_seqs 1102 out of 2943
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.6E-52 8.9E-57 426.8 39.2 288 265-560 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 7E-45 2.4E-49 358.9 42.5 291 264-560 24-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 3.9E-44 1.3E-48 356.9 46.8 292 260-558 43-340 (340)
4 4ery_A WD repeat-containing pr 100.0 1E-43 3.5E-48 349.6 42.6 293 263-560 14-311 (312)
5 2ynn_A Coatomer subunit beta'; 100.0 1.1E-43 3.8E-48 347.8 41.9 291 263-561 4-302 (304)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-43 7.5E-48 352.2 42.4 302 263-567 6-341 (345)
7 2pbi_B Guanine nucleotide-bind 100.0 2.7E-43 9.2E-48 352.7 42.7 292 261-558 53-354 (354)
8 3frx_A Guanine nucleotide-bind 100.0 5.5E-42 1.9E-46 338.1 43.1 291 264-562 9-318 (319)
9 3iz6_a 40S ribosomal protein R 100.0 1.6E-43 5.5E-48 358.1 32.9 298 261-563 55-377 (380)
10 2xzm_R RACK1; ribosome, transl 100.0 8E-42 2.7E-46 340.7 42.4 296 262-563 11-342 (343)
11 4gqb_B Methylosome protein 50; 100.0 1.6E-42 5.4E-47 344.8 35.2 290 270-566 28-336 (344)
12 1nr0_A Actin interacting prote 100.0 1.9E-41 6.5E-46 364.5 42.5 309 264-580 139-594 (611)
13 4g56_B MGC81050 protein; prote 100.0 4.1E-42 1.4E-46 344.4 33.1 289 267-562 37-344 (357)
14 1erj_A Transcriptional repress 100.0 6E-41 2E-45 340.8 40.8 284 270-562 62-390 (393)
15 2hes_X YDR267CP; beta-propelle 100.0 1.9E-40 6.5E-45 328.8 40.6 292 262-561 4-328 (330)
16 1nr0_A Actin interacting prote 100.0 9E-41 3.1E-45 359.2 39.5 296 262-565 49-359 (611)
17 4aow_A Guanine nucleotide-bind 100.0 1.7E-39 5.7E-44 323.1 44.1 293 264-563 30-339 (340)
18 2ynn_A Coatomer subunit beta'; 100.0 5.6E-40 1.9E-44 321.5 37.2 271 308-580 4-283 (304)
19 2ymu_A WD-40 repeat protein; u 100.0 2E-39 6.8E-44 347.0 44.2 285 261-558 292-577 (577)
20 2ymu_A WD-40 repeat protein; u 100.0 7.3E-39 2.5E-43 342.6 45.9 308 261-581 251-563 (577)
21 3zwl_B Eukaryotic translation 100.0 4.8E-39 1.6E-43 323.2 41.6 292 265-566 25-351 (369)
22 1gxr_A ESG1, transducin-like e 100.0 3.9E-38 1.3E-42 312.5 43.5 284 268-559 47-335 (337)
23 3dm0_A Maltose-binding peripla 100.0 1.4E-38 4.9E-43 347.7 42.1 290 265-561 375-693 (694)
24 1sq9_A Antiviral protein SKI8; 100.0 4E-39 1.4E-43 327.8 35.1 294 263-563 7-397 (397)
25 3odt_A Protein DOA1; ubiquitin 100.0 3.9E-38 1.3E-42 309.2 39.6 293 261-569 7-304 (313)
26 3ei3_B DNA damage-binding prot 100.0 2E-38 6.8E-43 321.2 38.3 291 263-561 64-382 (383)
27 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-38 4.5E-43 320.8 34.4 292 267-564 3-364 (372)
28 1vyh_C Platelet-activating fac 100.0 2.2E-38 7.5E-43 323.6 36.4 264 312-580 103-393 (410)
29 3i2n_A WD repeat-containing pr 100.0 1.3E-38 4.5E-43 318.7 33.9 294 264-564 10-356 (357)
30 4e54_B DNA damage-binding prot 100.0 6.7E-39 2.3E-43 330.4 32.0 296 264-565 111-434 (435)
31 2pm9_A Protein WEB1, protein t 100.0 1.7E-39 5.7E-44 332.7 26.5 290 271-564 11-340 (416)
32 3k26_A Polycomb protein EED; W 100.0 6.2E-38 2.1E-42 314.8 36.2 290 266-561 12-366 (366)
33 1r5m_A SIR4-interacting protei 100.0 1.2E-37 4.1E-42 319.3 37.2 286 270-563 43-363 (425)
34 1r5m_A SIR4-interacting protei 100.0 2.9E-37 9.8E-42 316.5 37.0 280 270-560 106-424 (425)
35 3ow8_A WD repeat-containing pr 100.0 5E-37 1.7E-41 302.7 37.0 268 237-516 50-319 (321)
36 3gre_A Serine/threonine-protei 100.0 1.2E-37 4.1E-42 321.4 32.1 296 259-558 49-437 (437)
37 4a11_B DNA excision repair pro 100.0 1.8E-36 6E-41 309.0 38.7 302 263-567 34-371 (408)
38 2pm9_A Protein WEB1, protein t 100.0 3.9E-38 1.3E-42 322.5 26.5 311 242-562 42-415 (416)
39 3vl1_A 26S proteasome regulato 100.0 4E-37 1.4E-41 315.6 33.9 309 238-561 71-419 (420)
40 1got_B GT-beta; complex (GTP-b 100.0 2.9E-36 9.9E-41 300.0 38.7 267 308-580 46-325 (340)
41 3dwl_C Actin-related protein 2 100.0 3.6E-38 1.2E-42 318.5 25.0 288 267-559 6-377 (377)
42 3mkq_A Coatomer beta'-subunit; 100.0 2.7E-36 9.1E-41 336.2 42.1 295 263-564 4-305 (814)
43 4gga_A P55CDC, cell division c 100.0 8.4E-36 2.9E-40 305.8 40.7 280 274-564 107-398 (420)
44 1gxr_A ESG1, transducin-like e 100.0 1.2E-36 4E-41 301.8 33.0 299 271-580 8-319 (337)
45 4aez_A CDC20, WD repeat-contai 100.0 2.6E-36 8.8E-41 307.7 35.8 287 268-567 87-386 (401)
46 1yfq_A Cell cycle arrest prote 100.0 3.5E-36 1.2E-40 299.4 34.8 287 265-559 4-322 (342)
47 3vl1_A 26S proteasome regulato 100.0 2.9E-37 9.9E-42 316.6 27.3 299 273-580 57-398 (420)
48 3f3f_A Nucleoporin SEH1; struc 100.0 2.4E-36 8.1E-41 300.6 33.1 296 265-565 4-341 (351)
49 4gqb_B Methylosome protein 50; 100.0 1E-35 3.6E-40 295.6 36.9 247 269-521 79-334 (344)
50 4h5i_A Guanine nucleotide-exch 100.0 1.8E-36 6.2E-41 304.2 31.7 282 273-562 15-344 (365)
51 4ggc_A P55CDC, cell division c 100.0 4.7E-35 1.6E-39 288.0 41.1 293 260-563 9-317 (318)
52 3v7d_B Cell division control p 100.0 3.2E-35 1.1E-39 305.6 41.5 287 264-567 113-427 (464)
53 3frx_A Guanine nucleotide-bind 100.0 2.5E-35 8.6E-40 290.4 37.4 269 305-580 5-299 (319)
54 2pbi_B Guanine nucleotide-bind 100.0 2.4E-35 8.3E-40 294.9 37.3 268 309-581 56-340 (354)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-35 6.8E-40 305.5 37.8 295 264-580 110-420 (445)
56 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-35 7.9E-40 343.5 42.7 290 264-561 607-913 (1249)
57 4g56_B MGC81050 protein; prote 100.0 2.5E-36 8.4E-41 302.4 29.0 293 277-580 10-325 (357)
58 4ery_A WD repeat-containing pr 100.0 2.5E-35 8.5E-40 289.6 35.6 269 307-580 13-292 (312)
59 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.5E-35 1.2E-39 292.8 36.3 269 307-579 5-315 (345)
60 3mmy_A MRNA export factor; mRN 100.0 3.1E-35 1.1E-39 295.2 35.3 298 259-562 26-347 (368)
61 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-35 1.3E-39 341.8 40.7 315 261-579 646-1056(1249)
62 3dw8_B Serine/threonine-protei 100.0 2.8E-35 9.5E-40 304.4 35.1 286 270-560 26-445 (447)
63 3iz6_a 40S ribosomal protein R 100.0 3.7E-36 1.3E-40 304.1 27.8 269 308-580 57-357 (380)
64 1p22_A F-BOX/WD-repeat protein 100.0 4.9E-35 1.7E-39 301.6 36.4 280 266-567 127-420 (435)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-34 1.1E-38 296.4 41.7 301 238-562 132-443 (445)
66 2xzm_R RACK1; ribosome, transl 100.0 1.3E-34 4.3E-39 288.6 37.0 274 237-519 41-341 (343)
67 1pgu_A Actin interacting prote 100.0 1.3E-34 4.3E-39 311.9 38.8 305 243-560 37-365 (615)
68 1pgu_A Actin interacting prote 100.0 3E-34 1E-38 309.0 41.0 307 263-580 151-597 (615)
69 1erj_A Transcriptional repress 100.0 2.5E-34 8.6E-39 292.0 37.7 241 273-518 124-389 (393)
70 2pm7_B Protein transport prote 100.0 2.1E-34 7.1E-39 280.9 35.2 247 311-561 3-285 (297)
71 2j04_B YDR362CP, TAU91; beta p 100.0 5.9E-36 2E-40 312.4 25.0 314 241-563 179-519 (524)
72 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-34 5.3E-39 322.2 36.9 199 268-473 13-243 (902)
73 2pm7_B Protein transport prote 100.0 2.7E-34 9.3E-39 280.0 33.5 249 265-517 2-284 (297)
74 3bg1_A Protein SEC13 homolog; 100.0 6.3E-35 2.1E-39 287.2 28.2 248 266-517 7-292 (316)
75 2hes_X YDR267CP; beta-propelle 100.0 6.2E-34 2.1E-38 281.9 35.5 248 308-562 5-281 (330)
76 3jrp_A Fusion protein of prote 100.0 1.3E-34 4.3E-39 292.2 30.5 253 264-520 3-289 (379)
77 3v7d_B Cell division control p 100.0 2E-33 6.9E-38 292.1 40.3 299 238-559 135-461 (464)
78 2oaj_A Protein SNI1; WD40 repe 100.0 3.3E-34 1.1E-38 319.6 36.3 182 239-434 33-244 (902)
79 3mkq_A Coatomer beta'-subunit; 100.0 7E-34 2.4E-38 316.7 38.5 323 241-580 31-405 (814)
80 3bg1_A Protein SEC13 homolog; 100.0 3.2E-34 1.1E-38 282.1 24.9 246 311-560 7-292 (316)
81 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4E-37 273.6 36.3 284 289-580 9-319 (340)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-34 1.7E-38 290.9 25.0 285 274-564 36-345 (402)
83 3zwl_B Eukaryotic translation 100.0 4.9E-32 1.7E-36 272.0 37.6 267 308-580 23-328 (369)
84 2j04_B YDR362CP, TAU91; beta p 100.0 8.7E-34 3E-38 296.1 25.1 306 264-580 126-496 (524)
85 3jrp_A Fusion protein of prote 100.0 1.5E-32 5.3E-37 276.9 32.8 248 310-561 4-287 (379)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-32 1.5E-36 280.9 36.1 284 272-561 4-391 (450)
87 3dm0_A Maltose-binding peripla 100.0 3.8E-32 1.3E-36 296.9 37.0 271 240-517 400-692 (694)
88 1sq9_A Antiviral protein SKI8; 100.0 2.1E-32 7.2E-37 278.1 32.0 251 308-566 7-327 (397)
89 3ei3_B DNA damage-binding prot 100.0 3.3E-32 1.1E-36 275.4 33.1 267 308-581 64-366 (383)
90 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-31 4.1E-36 262.9 34.3 262 307-580 8-279 (313)
91 1k8k_C P40, ARP2/3 complex 41 100.0 6.1E-32 2.1E-36 271.9 32.1 244 313-561 4-274 (372)
92 2xyi_A Probable histone-bindin 100.0 5.6E-32 1.9E-36 278.1 32.3 252 311-565 122-414 (430)
93 4aez_A CDC20, WD repeat-contai 100.0 2.6E-31 8.9E-36 270.6 36.4 274 238-526 106-388 (401)
94 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-33 1.8E-37 282.8 23.6 261 270-560 13-296 (588)
95 3dw8_B Serine/threonine-protei 100.0 2.9E-32 1E-36 281.7 28.6 247 315-565 26-377 (447)
96 3gre_A Serine/threonine-protei 100.0 1.7E-32 5.9E-37 282.7 24.9 275 279-567 34-365 (437)
97 4gga_A P55CDC, cell division c 100.0 4E-31 1.4E-35 271.0 34.8 284 238-537 118-414 (420)
98 3k26_A Polycomb protein EED; W 100.0 5.3E-32 1.8E-36 271.5 26.5 268 238-518 37-366 (366)
99 3jro_A Fusion protein of prote 100.0 2.1E-32 7.3E-37 300.7 25.1 251 265-519 2-286 (753)
100 4e54_B DNA damage-binding prot 100.0 1E-31 3.5E-36 276.7 28.1 266 312-581 114-414 (435)
101 3dwl_C Actin-related protein 2 100.0 1.2E-32 4.2E-37 277.9 19.6 242 313-560 7-280 (377)
102 3i2n_A WD repeat-containing pr 100.0 2E-31 6.8E-36 266.5 27.9 268 309-581 10-335 (357)
103 1yfq_A Cell cycle arrest prote 100.0 6E-31 2.1E-35 261.5 30.4 252 311-569 5-290 (342)
104 3bws_A Protein LP49; two-domai 100.0 4.1E-30 1.4E-34 264.5 37.5 289 264-561 115-432 (433)
105 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-30 4.8E-35 260.4 32.7 281 263-563 10-338 (355)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 5.2E-31 1.8E-35 268.5 29.9 273 241-521 53-345 (402)
107 3mmy_A MRNA export factor; mRN 100.0 2.4E-30 8.4E-35 259.5 34.2 269 308-581 30-329 (368)
108 3jro_A Fusion protein of prote 100.0 4.2E-31 1.4E-35 290.4 29.2 249 311-563 3-287 (753)
109 4a11_B DNA excision repair pro 100.0 5.9E-30 2E-34 260.6 34.1 314 237-561 58-405 (408)
110 1l0q_A Surface layer protein; 100.0 3.9E-29 1.3E-33 253.6 39.1 271 285-567 3-281 (391)
111 1l0q_A Surface layer protein; 100.0 1.7E-28 6E-33 248.7 42.4 322 238-579 5-359 (391)
112 3lrv_A PRE-mRNA-splicing facto 100.0 7.2E-31 2.5E-35 261.4 23.9 267 279-561 43-333 (343)
113 4gq1_A NUP37; propeller, trans 100.0 4.7E-31 1.6E-35 267.7 20.3 273 269-559 86-387 (393)
114 4h5i_A Guanine nucleotide-exch 100.0 5.1E-30 1.7E-34 257.2 27.3 246 266-519 67-344 (365)
115 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-31 1.7E-35 268.4 19.9 244 270-550 83-350 (588)
116 4ggc_A P55CDC, cell division c 100.0 4.7E-29 1.6E-33 245.1 33.5 273 231-520 32-317 (318)
117 2xyi_A Probable histone-bindin 100.0 1.2E-29 4.1E-34 260.7 30.0 251 266-519 122-411 (430)
118 1p22_A F-BOX/WD-repeat protein 100.0 2E-29 6.8E-34 259.6 31.0 274 239-538 147-433 (435)
119 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-28 8.5E-33 244.1 30.3 248 298-563 3-273 (355)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.4E-28 2.5E-32 249.0 31.8 235 318-559 5-337 (450)
121 2w18_A PALB2, fancn, partner a 100.0 1.9E-27 6.6E-32 227.5 31.5 275 274-559 41-355 (356)
122 3bws_A Protein LP49; two-domai 100.0 1.3E-27 4.6E-32 245.7 31.8 302 271-580 59-413 (433)
123 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-27 6.5E-32 236.1 26.4 281 238-525 26-344 (351)
124 3lrv_A PRE-mRNA-splicing facto 100.0 5.2E-28 1.8E-32 240.7 21.5 230 324-563 43-294 (343)
125 1nir_A Nitrite reductase; hemo 100.0 4.6E-26 1.6E-30 239.6 31.4 290 280-580 145-491 (543)
126 1nir_A Nitrite reductase; hemo 100.0 1.5E-25 5.2E-30 235.7 34.9 325 239-580 153-532 (543)
127 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-26 1.1E-30 252.1 29.3 303 272-580 36-437 (741)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.2E-26 1.1E-30 233.6 26.6 295 272-577 62-407 (415)
129 2w18_A PALB2, fancn, partner a 99.9 1.5E-25 5.3E-30 214.3 24.8 196 271-470 110-355 (356)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.2E-25 1.1E-29 226.2 27.0 263 266-541 111-409 (415)
131 4gq1_A NUP37; propeller, trans 99.9 1.1E-25 3.7E-30 228.2 22.2 230 237-472 103-389 (393)
132 3u4y_A Uncharacterized protein 99.9 9.7E-24 3.3E-28 208.6 32.3 277 279-565 4-308 (331)
133 1ri6_A Putative isomerase YBHE 99.9 7.8E-24 2.7E-28 210.0 30.6 287 286-578 7-333 (343)
134 1xfd_A DIP, dipeptidyl aminope 99.9 2.2E-24 7.4E-29 236.9 24.6 299 274-580 18-422 (723)
135 2ojh_A Uncharacterized protein 99.9 2.6E-23 8.9E-28 201.3 26.5 252 289-551 17-292 (297)
136 3vgz_A Uncharacterized protein 99.9 4.8E-22 1.7E-26 198.0 35.9 269 271-551 39-334 (353)
137 1k32_A Tricorn protease; prote 99.9 1.2E-22 4.3E-27 231.4 33.1 301 264-580 44-433 (1045)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-22 6.1E-27 221.0 32.1 279 273-563 82-437 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 6.1E-23 2.1E-27 224.7 27.8 297 275-580 28-413 (706)
140 1pby_B Quinohemoprotein amine 99.9 1.4E-22 4.9E-27 200.3 26.3 271 285-568 2-317 (337)
141 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.1E-27 223.6 28.2 281 274-562 110-460 (741)
142 3o4h_A Acylamino-acid-releasin 99.9 2.1E-22 7.1E-27 215.2 27.8 272 271-561 20-315 (582)
143 1k32_A Tricorn protease; prote 99.9 4.3E-22 1.5E-26 226.9 29.5 284 265-562 196-503 (1045)
144 1xfd_A DIP, dipeptidyl aminope 99.9 3.9E-22 1.3E-26 218.9 28.0 300 241-551 33-431 (723)
145 1ri6_A Putative isomerase YBHE 99.9 2.2E-21 7.6E-26 192.2 30.6 288 242-541 12-334 (343)
146 3hfq_A Uncharacterized protein 99.9 5.6E-21 1.9E-25 190.1 32.9 271 292-565 14-323 (347)
147 2ojh_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 187.2 27.3 241 334-580 17-284 (297)
148 3vgz_A Uncharacterized protein 99.9 4.2E-21 1.4E-25 191.2 29.1 259 318-580 41-326 (353)
149 3pe7_A Oligogalacturonate lyas 99.9 2.4E-21 8.2E-26 195.9 26.0 294 263-561 21-382 (388)
150 3u4y_A Uncharacterized protein 99.9 7.2E-21 2.5E-25 187.8 28.8 252 324-580 4-285 (331)
151 1jmx_B Amine dehydrogenase; ox 99.9 7.8E-21 2.7E-25 188.8 27.2 269 277-569 4-333 (349)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 3.8E-20 1.3E-24 189.3 28.4 201 272-473 36-279 (434)
153 3scy_A Hypothetical bacterial 99.9 5.3E-19 1.8E-23 176.8 35.9 276 284-566 13-344 (361)
154 3scy_A Hypothetical bacterial 99.9 3.1E-19 1.1E-23 178.5 32.4 262 271-538 48-360 (361)
155 1z68_A Fibroblast activation p 99.9 3.9E-21 1.3E-25 210.7 20.1 276 277-561 20-391 (719)
156 1pby_B Quinohemoprotein amine 99.9 7.7E-20 2.6E-24 180.6 26.3 271 239-530 5-322 (337)
157 3hfq_A Uncharacterized protein 99.9 7.7E-19 2.6E-23 174.6 31.2 248 270-522 37-323 (347)
158 3o4h_A Acylamino-acid-releasin 99.8 4.2E-20 1.4E-24 197.3 19.6 247 317-580 21-294 (582)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 9.5E-19 3.2E-23 178.9 28.5 202 270-471 90-332 (434)
160 1z68_A Fibroblast activation p 99.8 1.8E-19 6.2E-24 197.5 24.8 308 239-564 30-446 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-18 4.8E-23 174.0 28.2 277 286-564 4-344 (365)
162 4a5s_A Dipeptidyl peptidase 4 99.8 4.9E-19 1.7E-23 194.3 25.8 298 274-580 18-428 (740)
163 3c5m_A Oligogalacturonate lyas 99.8 1.3E-19 4.5E-24 183.4 19.4 273 274-560 37-381 (396)
164 2oiz_A Aromatic amine dehydrog 99.8 1.8E-18 6.2E-23 172.5 25.5 278 292-580 29-360 (361)
165 3pe7_A Oligogalacturonate lyas 99.8 2.8E-18 9.5E-23 173.3 24.6 276 299-580 15-363 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-17 4.6E-22 166.9 26.8 244 271-519 38-342 (365)
167 3azo_A Aminopeptidase; POP fam 99.8 9.6E-18 3.3E-22 182.0 26.0 290 265-564 16-372 (662)
168 1q7f_A NHL, brain tumor CG1071 99.8 5.1E-16 1.7E-20 149.6 33.4 241 315-562 27-281 (286)
169 2dg1_A DRP35, lactonase; beta 99.8 1.3E-16 4.3E-21 157.6 29.7 270 273-551 6-300 (333)
170 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.4E-21 158.4 30.1 266 264-541 43-359 (361)
171 2gop_A Trilobed protease; beta 99.8 1.6E-16 5.5E-21 157.7 29.8 254 273-560 15-330 (347)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1.7E-16 6E-21 156.3 28.9 242 317-562 23-323 (329)
173 1q7f_A NHL, brain tumor CG1071 99.8 9.1E-16 3.1E-20 147.8 31.3 242 269-519 26-281 (286)
174 1jmx_B Amine dehydrogenase; ox 99.8 9.2E-17 3.1E-21 159.3 24.9 252 322-580 4-307 (349)
175 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-16 3.7E-21 175.7 26.6 303 244-563 35-451 (740)
176 3c5m_A Oligogalacturonate lyas 99.7 2.5E-17 8.6E-22 166.5 18.1 254 320-580 38-363 (396)
177 2xdw_A Prolyl endopeptidase; a 99.7 2.5E-15 8.6E-20 164.1 32.7 246 315-563 122-416 (710)
178 3azo_A Aminopeptidase; POP fam 99.7 6.7E-16 2.3E-20 167.4 26.2 248 312-564 18-328 (662)
179 2z2n_A Virginiamycin B lyase; 99.7 1E-13 3.5E-18 134.0 38.5 281 268-563 10-297 (299)
180 1qks_A Cytochrome CD1 nitrite 99.7 5.6E-14 1.9E-18 147.3 36.8 308 264-580 189-556 (567)
181 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 9.8E-19 149.5 34.4 272 282-562 165-478 (567)
182 3e5z_A Putative gluconolactona 99.7 1.2E-14 4.2E-19 140.7 29.0 245 312-567 22-292 (296)
183 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-15 2.5E-19 144.7 27.7 238 272-517 23-321 (329)
184 2bkl_A Prolyl endopeptidase; m 99.7 9.3E-16 3.2E-20 167.0 22.7 279 282-564 77-400 (695)
185 2xdw_A Prolyl endopeptidase; a 99.7 6.9E-15 2.3E-19 160.6 29.2 241 270-520 122-416 (710)
186 2bkl_A Prolyl endopeptidase; m 99.7 4.6E-15 1.6E-19 161.5 25.7 243 270-521 118-400 (695)
187 3dsm_A Uncharacterized protein 99.7 5.3E-14 1.8E-18 138.3 30.2 272 292-577 15-321 (328)
188 1rwi_B Serine/threonine-protei 99.7 2.7E-14 9.2E-19 136.1 26.2 241 319-565 25-268 (270)
189 2gop_A Trilobed protease; beta 99.7 2.9E-14 9.8E-19 141.4 26.3 222 318-564 15-294 (347)
190 3no2_A Uncharacterized protein 99.7 1.4E-13 4.7E-18 131.4 29.8 239 283-528 4-262 (276)
191 3e5z_A Putative gluconolactona 99.7 7.2E-14 2.4E-18 135.2 27.6 243 264-521 19-289 (296)
192 1yr2_A Prolyl oligopeptidase; 99.6 7.8E-14 2.7E-18 152.9 29.2 276 282-564 116-444 (741)
193 3no2_A Uncharacterized protein 99.6 2.5E-13 8.5E-18 129.6 28.6 213 328-549 4-231 (276)
194 2dg1_A DRP35, lactonase; beta 99.6 8.4E-13 2.9E-17 129.9 33.0 241 262-509 34-301 (333)
195 2mad_H Methylamine dehydrogena 99.6 2.6E-12 9E-17 128.0 35.9 276 280-567 28-356 (373)
196 2qc5_A Streptogramin B lactona 99.6 4.7E-12 1.6E-16 122.3 36.8 278 270-560 17-299 (300)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.7E-17 127.9 31.2 243 316-562 16-300 (314)
198 3sjl_D Methylamine dehydrogena 99.6 9.2E-13 3.1E-17 129.5 29.7 286 280-578 40-384 (386)
199 1rwi_B Serine/threonine-protei 99.6 2E-13 6.8E-18 130.0 24.5 240 274-521 25-267 (270)
200 2z2n_A Virginiamycin B lyase; 99.6 1.3E-11 4.4E-16 119.1 33.9 239 314-560 11-254 (299)
201 3dsm_A Uncharacterized protein 99.6 1.7E-12 5.8E-17 127.5 27.4 250 273-537 44-319 (328)
202 3g4e_A Regucalcin; six bladed 99.5 1.7E-11 5.9E-16 118.4 32.0 229 315-551 10-263 (297)
203 1yr2_A Prolyl oligopeptidase; 99.5 1E-12 3.5E-17 144.1 25.0 242 270-521 160-444 (741)
204 3c75_H MADH, methylamine dehyd 99.5 1E-11 3.6E-16 124.3 27.7 277 282-568 82-409 (426)
205 3sjl_D Methylamine dehydrogena 99.5 9.4E-12 3.2E-16 122.4 26.5 267 262-540 69-384 (386)
206 2qc5_A Streptogramin B lactona 99.5 2E-10 6.9E-15 110.7 35.5 258 315-581 17-285 (300)
207 2mad_H Methylamine dehydrogena 99.5 2.8E-10 9.5E-15 113.3 35.7 249 264-525 59-357 (373)
208 3hrp_A Uncharacterized protein 99.5 5E-11 1.7E-15 120.4 30.3 237 273-516 131-408 (409)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.3E-11 1.8E-15 115.8 29.1 239 271-518 16-299 (314)
210 3hrp_A Uncharacterized protein 99.5 2.3E-11 7.7E-16 123.0 26.7 235 318-559 131-408 (409)
211 1xip_A Nucleoporin NUP159; bet 99.5 1.3E-11 4.6E-16 121.8 24.2 173 274-460 39-232 (388)
212 2qe8_A Uncharacterized protein 99.4 1.5E-11 5.1E-16 121.5 23.1 269 273-558 17-318 (343)
213 3dr2_A Exported gluconolactona 99.4 5.4E-11 1.9E-15 115.4 26.4 230 313-555 40-301 (305)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 4.5E-10 1.5E-14 110.0 33.1 225 320-551 51-293 (326)
215 3c75_H MADH, methylamine dehyd 99.4 8.4E-11 2.9E-15 117.8 26.2 252 262-525 109-409 (426)
216 3iuj_A Prolyl endopeptidase; h 99.4 3.9E-11 1.3E-15 130.2 25.7 241 315-564 126-408 (693)
217 3iuj_A Prolyl endopeptidase; h 99.4 5.1E-11 1.7E-15 129.4 25.4 239 270-521 126-408 (693)
218 1mda_H Methylamine dehydrogena 99.3 6.8E-11 2.3E-15 116.5 20.9 257 295-569 47-354 (368)
219 3dr2_A Exported gluconolactona 99.3 3.2E-10 1.1E-14 109.9 24.6 235 264-515 36-303 (305)
220 3g4e_A Regucalcin; six bladed 99.3 2.6E-09 8.7E-14 103.1 30.2 227 269-507 9-261 (297)
221 1xip_A Nucleoporin NUP159; bet 99.3 2.2E-10 7.5E-15 113.1 21.6 175 319-506 39-232 (388)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.3E-13 99.6 30.8 220 274-507 50-291 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.3E-09 2.5E-13 103.5 29.8 260 283-558 102-375 (376)
224 1kb0_A Quinohemoprotein alcoho 99.2 8.8E-10 3E-14 118.6 23.6 288 284-580 77-532 (677)
225 1yiq_A Quinohemoprotein alcoho 99.2 2.4E-09 8.2E-14 115.5 26.7 262 283-550 120-538 (689)
226 3q7m_A Lipoprotein YFGL, BAMB; 99.2 9.2E-09 3.1E-13 102.8 28.9 268 283-568 52-344 (376)
227 1yiq_A Quinohemoprotein alcoho 99.2 1.3E-09 4.4E-14 117.6 23.9 289 284-580 70-530 (689)
228 1kb0_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 114.3 26.0 268 283-561 127-567 (677)
229 1mda_H Methylamine dehydrogena 99.2 9.7E-10 3.3E-14 108.3 19.9 256 261-539 55-366 (368)
230 1fwx_A Nitrous oxide reductase 99.1 8.4E-09 2.9E-13 105.7 23.5 232 328-565 100-435 (595)
231 2hz6_A Endoplasmic reticulum t 99.1 4.7E-11 1.6E-15 119.0 6.9 223 328-563 8-238 (369)
232 1npe_A Nidogen, entactin; glyc 99.1 1.2E-07 4.1E-12 89.7 29.4 250 285-541 2-262 (267)
233 3hxj_A Pyrrolo-quinoline quino 99.1 3.8E-09 1.3E-13 103.3 19.2 268 271-564 58-327 (330)
234 2ece_A 462AA long hypothetical 99.1 7.6E-08 2.6E-12 95.2 26.8 224 282-506 93-399 (462)
235 2hz6_A Endoplasmic reticulum t 99.1 8E-11 2.7E-15 117.3 5.3 258 283-560 8-278 (369)
236 3hxj_A Pyrrolo-quinoline quino 99.0 3.7E-09 1.3E-13 103.4 14.7 261 278-565 25-287 (330)
237 2qe8_A Uncharacterized protein 99.0 2E-08 6.8E-13 99.0 19.9 226 269-514 63-317 (343)
238 2fp8_A Strictosidine synthase; 99.0 2.8E-07 9.6E-12 89.8 27.6 235 319-561 20-313 (322)
239 4a2l_A BT_4663, two-component 98.9 2.8E-06 9.6E-11 93.7 36.5 278 275-565 175-484 (795)
240 4a2l_A BT_4663, two-component 98.9 7E-06 2.4E-10 90.5 39.4 279 272-565 309-618 (795)
241 1fwx_A Nitrous oxide reductase 98.9 1.8E-07 6.2E-12 95.9 24.3 235 282-520 99-433 (595)
242 2ece_A 462AA long hypothetical 98.9 1.9E-06 6.4E-11 85.4 29.3 220 327-549 93-399 (462)
243 1kv9_A Type II quinohemoprotei 98.9 1.7E-07 5.9E-12 100.7 23.4 276 284-569 66-496 (668)
244 2iwa_A Glutamine cyclotransfer 98.9 1E-06 3.6E-11 81.8 25.4 203 263-473 10-238 (266)
245 2iwa_A Glutamine cyclotransfer 98.9 3.8E-07 1.3E-11 84.8 21.8 206 350-563 10-239 (266)
246 2fp8_A Strictosidine synthase; 98.9 9.6E-07 3.3E-11 86.0 25.8 238 273-517 19-312 (322)
247 1npe_A Nidogen, entactin; glyc 98.8 5E-06 1.7E-10 78.4 28.3 203 273-481 36-246 (267)
248 1w6s_A Methanol dehydrogenase 98.8 3.2E-06 1.1E-10 88.8 27.8 289 284-580 62-528 (599)
249 1kv9_A Type II quinohemoprotei 98.8 1.9E-06 6.5E-11 92.5 26.6 258 284-549 117-520 (668)
250 2p4o_A Hypothetical protein; p 98.8 2.1E-05 7.3E-10 75.7 31.1 237 262-508 22-278 (306)
251 2ad6_A Methanol dehydrogenase 98.7 3.5E-06 1.2E-10 88.5 27.2 276 284-569 62-502 (571)
252 1flg_A Protein (quinoprotein e 98.7 9.6E-06 3.3E-10 85.4 29.9 288 285-580 69-541 (582)
253 3v9f_A Two-component system se 98.7 2.2E-05 7.5E-10 86.3 33.5 280 271-564 311-614 (781)
254 3nol_A Glutamine cyclotransfer 98.7 2.6E-06 8.9E-11 78.2 21.4 192 351-548 33-243 (262)
255 3v9f_A Two-component system se 98.7 5.7E-05 1.9E-09 83.0 36.5 280 272-564 210-527 (781)
256 1k3i_A Galactose oxidase precu 98.7 5.7E-07 2E-11 96.7 20.0 270 277-550 190-530 (656)
257 2p4o_A Hypothetical protein; p 98.7 5.3E-05 1.8E-09 72.9 32.1 231 309-549 24-277 (306)
258 3nol_A Glutamine cyclotransfer 98.7 4E-06 1.4E-10 77.0 21.3 189 262-461 31-244 (262)
259 2ad6_A Methanol dehydrogenase 98.7 5.3E-06 1.8E-10 87.2 25.0 261 284-551 115-528 (571)
260 1w6s_A Methanol dehydrogenase 98.6 8.8E-06 3E-10 85.5 25.7 265 278-550 111-536 (599)
261 3v64_C Agrin; beta propeller, 98.6 7.1E-05 2.4E-09 73.4 30.4 253 273-536 34-293 (349)
262 3nok_A Glutaminyl cyclase; bet 98.6 7.5E-06 2.6E-10 75.1 21.2 192 350-548 44-253 (268)
263 2xe4_A Oligopeptidase B; hydro 98.6 6.6E-06 2.2E-10 89.8 23.6 239 319-563 175-460 (751)
264 1flg_A Protein (quinoprotein e 98.6 9.7E-05 3.3E-09 77.7 31.7 259 284-550 117-549 (582)
265 1ijq_A LDL receptor, low-densi 98.6 0.00026 8.9E-09 68.3 32.1 232 286-527 3-247 (316)
266 3mbr_X Glutamine cyclotransfer 98.6 5.6E-05 1.9E-09 68.7 25.3 192 351-548 11-222 (243)
267 2xbg_A YCF48-like protein; pho 98.5 0.00021 7.2E-09 69.3 31.4 276 272-559 35-320 (327)
268 3tc9_A Hypothetical hydrolase; 98.5 1.7E-05 5.7E-10 80.3 24.2 238 319-560 138-429 (430)
269 1k3i_A Galactose oxidase precu 98.5 1.6E-06 5.5E-11 93.2 17.6 240 322-563 190-499 (656)
270 3nok_A Glutaminyl cyclase; bet 98.5 1.9E-05 6.6E-10 72.4 22.0 189 263-461 44-254 (268)
271 3mbr_X Glutamine cyclotransfer 98.5 4.2E-05 1.4E-09 69.6 24.0 190 263-461 10-223 (243)
272 2xe4_A Oligopeptidase B; hydro 98.5 6.3E-05 2.2E-09 82.0 29.9 194 270-470 170-398 (751)
273 3p5b_L Low density lipoprotein 98.5 0.00034 1.1E-08 70.0 32.7 241 286-536 85-338 (400)
274 3v65_B Low-density lipoprotein 98.5 7.4E-05 2.5E-09 74.4 27.7 252 275-537 79-337 (386)
275 3qqz_A Putative uncharacterize 98.5 0.00015 5.2E-09 66.8 26.7 200 266-469 20-250 (255)
276 2xtc_A F-box-like/WD repeat-co 98.4 2.6E-07 8.9E-12 67.8 4.2 36 60-95 2-37 (90)
277 3v64_C Agrin; beta propeller, 98.3 0.0011 3.6E-08 65.0 30.1 234 321-563 37-277 (349)
278 4hw6_A Hypothetical protein, I 98.3 0.00016 5.6E-09 73.0 24.6 235 319-560 140-432 (433)
279 1ijq_A LDL receptor, low-densi 98.3 0.0024 8.1E-08 61.5 31.4 199 272-473 29-239 (316)
280 3qqz_A Putative uncharacterize 98.3 0.0011 3.8E-08 61.0 27.2 200 354-558 21-250 (255)
281 3kya_A Putative phosphatase; s 98.3 0.00026 8.9E-09 71.7 24.7 243 319-566 140-480 (496)
282 3p5b_L Low density lipoprotein 98.3 0.0024 8.3E-08 63.7 31.6 202 271-473 110-321 (400)
283 3sov_A LRP-6, low-density lipo 98.2 0.0007 2.4E-08 65.2 26.4 227 293-527 12-247 (318)
284 3v65_B Low-density lipoprotein 98.2 0.00082 2.8E-08 66.8 27.1 235 321-564 80-321 (386)
285 3tc9_A Hypothetical hydrolase; 98.2 0.00031 1.1E-08 70.9 23.5 153 274-432 138-301 (430)
286 3m0c_C LDL receptor, low-densi 98.2 0.0021 7.3E-08 69.6 30.9 233 286-526 397-640 (791)
287 4hw6_A Hypothetical protein, I 98.1 0.0013 4.5E-08 66.3 26.5 193 273-470 139-372 (433)
288 3s94_A LRP-6, low-density lipo 98.0 0.012 4.1E-07 62.2 32.5 285 273-563 84-425 (619)
289 2ism_A Putative oxidoreductase 98.0 0.0036 1.2E-07 61.2 26.7 222 319-549 32-333 (352)
290 2p9w_A MAL S 1 allergenic prot 98.0 0.0022 7.6E-08 60.8 23.3 158 316-473 11-216 (334)
291 2p9w_A MAL S 1 allergenic prot 98.0 0.003 1E-07 59.9 24.1 158 275-434 15-217 (334)
292 3sov_A LRP-6, low-density lipo 98.0 0.0039 1.3E-07 60.0 25.6 198 273-473 35-239 (318)
293 4a0p_A LRP6, LRP-6, low-densit 98.0 0.021 7E-07 60.4 33.2 229 286-523 8-242 (628)
294 3s94_A LRP-6, low-density lipo 98.0 0.028 9.5E-07 59.3 34.9 199 272-473 39-244 (619)
295 2xzh_A Clathrin heavy chain 1; 97.9 0.014 4.8E-07 54.8 32.6 261 293-565 48-336 (365)
296 2xbg_A YCF48-like protein; pho 97.9 0.0093 3.2E-07 57.6 27.7 230 272-515 79-319 (327)
297 3amr_A 3-phytase; beta-propell 97.9 0.005 1.7E-07 58.9 24.1 194 329-526 40-272 (355)
298 3ei3_A DNA damage-binding prot 97.9 0.044 1.5E-06 62.1 35.9 283 272-564 553-916 (1158)
299 3a9g_A Putative uncharacterize 97.9 0.015 5E-07 56.9 28.3 224 318-549 29-330 (354)
300 3kya_A Putative phosphatase; s 97.9 0.0028 9.6E-08 64.2 23.4 195 274-470 140-408 (496)
301 4a0p_A LRP6, LRP-6, low-densit 97.9 0.043 1.5E-06 57.9 37.4 196 273-473 37-238 (628)
302 3m0c_C LDL receptor, low-densi 97.9 0.012 4E-07 63.8 29.3 201 271-473 422-633 (791)
303 2vpj_A Kelch-like protein 12; 97.8 0.0015 5E-08 62.4 19.5 228 328-563 14-280 (301)
304 3ii7_A Kelch-like protein 7; p 97.8 0.0039 1.3E-07 59.6 22.0 226 285-520 13-274 (306)
305 3amr_A 3-phytase; beta-propell 97.8 0.0047 1.6E-07 59.2 21.8 184 370-560 39-262 (355)
306 1n7d_A LDL receptor, low-densi 97.8 9.4E-05 3.2E-09 79.6 11.1 236 293-537 385-633 (699)
307 2vpj_A Kelch-like protein 12; 97.8 0.0017 5.9E-08 61.9 19.0 227 283-520 14-280 (301)
308 2xn4_A Kelch-like protein 2; s 97.7 0.0044 1.5E-07 59.0 21.5 228 284-521 16-279 (302)
309 2xn4_A Kelch-like protein 2; s 97.7 0.0042 1.4E-07 59.2 21.1 226 329-563 16-278 (302)
310 2ism_A Putative oxidoreductase 97.7 0.02 6.9E-07 55.8 26.1 196 272-473 30-298 (352)
311 1bpo_A Protein (clathrin); cla 97.7 0.046 1.6E-06 53.5 34.8 261 293-565 47-335 (494)
312 3a9g_A Putative uncharacterize 97.7 0.028 9.5E-07 54.9 26.5 197 272-473 28-297 (354)
313 3ii7_A Kelch-like protein 7; p 97.6 0.0046 1.6E-07 59.1 19.7 224 330-563 13-274 (306)
314 4asc_A Kelch repeat and BTB do 97.6 0.014 4.8E-07 55.9 22.4 227 286-522 7-281 (315)
315 3sre_A PON1, serum paraoxonase 97.6 0.032 1.1E-06 54.1 24.4 185 337-526 81-308 (355)
316 1zgk_A Kelch-like ECH-associat 97.5 0.0093 3.2E-07 57.0 19.7 227 283-520 24-289 (308)
317 1n7d_A LDL receptor, low-densi 97.5 0.0007 2.4E-08 72.8 12.6 200 273-473 406-615 (699)
318 1zgk_A Kelch-like ECH-associat 97.5 0.0075 2.6E-07 57.7 18.8 225 328-563 24-289 (308)
319 3ei3_A DNA damage-binding prot 97.5 0.14 4.7E-06 58.1 31.5 214 340-558 808-1059(1158)
320 2g8s_A Glucose/sorbosone dehyd 97.4 0.056 1.9E-06 52.6 24.5 234 319-559 19-350 (353)
321 3ott_A Two-component system se 97.4 0.22 7.7E-06 54.0 34.8 265 272-558 21-304 (758)
322 4asc_A Kelch repeat and BTB do 97.4 0.022 7.6E-07 54.5 20.8 223 331-563 7-279 (315)
323 2g8s_A Glucose/sorbosone dehyd 97.3 0.096 3.3E-06 51.0 24.7 146 272-421 17-216 (353)
324 2woz_A Kelch repeat and BTB do 97.2 0.046 1.6E-06 52.3 21.1 228 286-523 18-292 (318)
325 1uuj_A Platelet-activating fac 97.2 0.00022 7.4E-09 52.0 3.3 55 62-117 9-63 (88)
326 1xi4_A Clathrin heavy chain; a 97.1 0.037 1.3E-06 62.4 20.9 261 293-565 47-335 (1630)
327 2woz_A Kelch repeat and BTB do 97.1 0.073 2.5E-06 50.9 21.3 223 331-563 18-289 (318)
328 2uvk_A YJHT; unknown function, 97.1 0.034 1.2E-06 54.2 19.1 235 283-525 19-349 (357)
329 2uvk_A YJHT; unknown function, 97.0 0.022 7.6E-07 55.6 16.9 234 328-568 19-349 (357)
330 3sre_A PON1, serum paraoxonase 97.0 0.28 9.6E-06 47.4 29.1 190 276-469 53-295 (355)
331 3s25_A Hypothetical 7-bladed b 96.9 0.31 1.1E-05 46.0 27.2 245 281-559 22-291 (302)
332 2xzh_A Clathrin heavy chain 1; 96.8 0.36 1.2E-05 45.4 31.5 227 278-518 72-332 (365)
333 1cru_A Protein (soluble quinop 96.8 0.54 1.8E-05 47.3 30.7 142 318-459 27-245 (454)
334 2be1_A Serine/threonine-protei 96.7 0.054 1.8E-06 52.0 16.3 192 330-523 11-236 (339)
335 3pbp_A Nucleoporin NUP82; beta 96.7 0.22 7.4E-06 48.8 20.3 146 281-428 29-208 (452)
336 1bpo_A Protein (clathrin); cla 96.5 0.7 2.4E-05 45.3 30.1 228 277-518 70-331 (494)
337 3das_A Putative oxidoreductase 96.5 0.64 2.2E-05 44.7 31.8 229 316-549 30-326 (347)
338 3pbp_A Nucleoporin NUP82; beta 96.5 0.39 1.3E-05 47.0 20.5 143 410-556 29-207 (452)
339 3s25_A Hypothetical 7-bladed b 96.5 0.62 2.1E-05 44.0 23.2 173 369-563 23-218 (302)
340 1tl2_A L10, protein (tachylect 96.2 0.14 4.7E-06 45.3 14.4 142 319-470 42-206 (236)
341 3sbq_A Nitrous-oxide reductase 96.2 1.2 4.1E-05 45.1 24.3 257 287-549 73-453 (638)
342 2zwa_A Leucine carboxyl methyl 96.2 0.31 1.1E-05 52.2 20.5 195 327-522 396-639 (695)
343 1cru_A Protein (soluble quinop 96.1 0.39 1.3E-05 48.4 19.2 106 272-378 26-162 (454)
344 3das_A Putative oxidoreductase 95.9 0.45 1.5E-05 45.8 17.7 153 264-418 23-218 (347)
345 1tl2_A L10, protein (tachylect 95.9 0.21 7E-06 44.2 13.6 99 361-466 42-157 (236)
346 1xi4_A Clathrin heavy chain; a 95.8 0.43 1.5E-05 54.1 18.9 221 339-569 48-297 (1630)
347 3ott_A Two-component system se 95.5 3.4 0.00012 44.7 37.8 273 273-560 146-447 (758)
348 2be1_A Serine/threonine-protei 95.3 0.35 1.2E-05 46.3 14.4 183 285-473 11-232 (339)
349 2zwa_A Leucine carboxyl methyl 95.1 0.47 1.6E-05 50.8 16.4 150 283-434 451-637 (695)
350 3b7f_A Glycosyl hydrolase, BNR 95.0 3 0.0001 40.9 28.6 178 286-467 24-257 (394)
351 3b7f_A Glycosyl hydrolase, BNR 92.6 8.2 0.00028 37.6 27.9 263 272-538 54-391 (394)
352 3qhy_B Beta-lactamase inhibito 92.4 3.7 0.00013 38.1 15.2 222 319-564 25-249 (282)
353 3qhy_B Beta-lactamase inhibito 92.4 5.9 0.0002 36.7 16.5 238 274-541 25-265 (282)
354 4hvt_A Ritya.17583.B, post-pro 88.1 30 0.001 36.8 25.3 235 322-560 133-429 (711)
355 3ukx_C Bimax2 peptide; arm rep 87.3 0.23 7.9E-06 25.7 1.1 12 5-16 16-27 (28)
356 3ukw_C Bimax1 peptide; arm rep 86.7 0.17 5.8E-06 26.2 0.5 12 5-16 16-27 (28)
357 3sbq_A Nitrous-oxide reductase 86.7 30 0.001 35.3 24.2 229 332-562 73-409 (638)
358 2d68_A FOP, FGFR1OP; alpha hel 86.0 0.71 2.4E-05 33.3 3.6 29 65-93 20-48 (82)
359 1wp5_A Topoisomerase IV; broke 83.5 30 0.001 32.6 21.7 188 282-472 3-225 (323)
360 3uc1_A DNA gyrase subunit A; D 81.9 35 0.0012 32.2 23.0 199 272-472 41-279 (327)
361 2wg3_C Hedgehog-interacting pr 81.6 45 0.0015 33.3 27.8 107 273-379 14-158 (463)
362 2wg3_C Hedgehog-interacting pr 81.1 47 0.0016 33.1 25.4 103 319-421 15-158 (463)
363 3l6v_A GYRA, DNA gyrase subuni 80.7 42 0.0014 32.3 24.1 190 281-472 4-265 (370)
364 3kci_A Probable E3 ubiquitin-p 79.7 46 0.0016 32.2 27.3 265 286-561 12-345 (389)
365 3no0_A DNA gyrase subunit A; D 76.0 47 0.0016 30.4 21.3 194 273-471 24-245 (276)
366 3kci_A Probable E3 ubiquitin-p 75.4 61 0.0021 31.3 30.1 225 285-517 63-344 (389)
367 1suu_A DNA gyrase subunit A; t 72.8 62 0.0021 30.2 25.4 189 282-472 6-231 (312)
368 4gq2_M Nucleoporin NUP120; bet 72.7 36 0.0012 37.6 13.5 30 496-525 244-273 (950)
369 4gq2_M Nucleoporin NUP120; bet 66.2 37 0.0013 37.6 11.8 38 319-356 237-274 (950)
370 3q6k_A 43.2 kDa salivary prote 61.3 1.2E+02 0.0041 29.2 26.5 185 340-549 124-342 (381)
371 1zi0_A DNA gyrase subunit A; b 59.3 1.1E+02 0.0039 28.3 21.4 198 273-472 42-277 (307)
372 1sqj_A OXG-RCBH, oligoxylogluc 58.2 2E+02 0.0068 30.8 25.8 149 272-422 14-190 (789)
373 1am7_A Lysozyme; glycosidase, 57.0 17 0.00057 30.0 5.2 56 110-165 73-128 (158)
374 1suu_A DNA gyrase subunit A; t 56.6 1.3E+02 0.0043 28.0 27.1 233 327-563 6-285 (312)
375 4fhn_B Nucleoporin NUP120; pro 55.8 32 0.0011 39.0 9.1 38 319-356 239-276 (1139)
376 2k9m_A RNA polymerase sigma fa 55.4 8.9 0.0003 30.6 3.3 29 64-92 22-51 (130)
377 3l6v_A GYRA, DNA gyrase subuni 55.0 1.5E+02 0.0051 28.4 24.7 237 325-564 3-319 (370)
378 3zwu_A Alkaline phosphatase PH 51.7 49 0.0017 34.1 9.0 58 320-377 478-548 (592)
379 1zvt_A Topoisomerase IV subuni 50.3 1.4E+02 0.0049 26.7 14.2 142 373-517 4-162 (256)
380 1wp5_A Topoisomerase IV; broke 49.8 1.7E+02 0.0057 27.4 23.3 198 273-472 39-277 (323)
381 4hvt_A Ritya.17583.B, post-pro 49.6 2.6E+02 0.0088 29.6 26.4 234 275-517 131-429 (711)
382 1zi0_A DNA gyrase subunit A; b 49.3 1.6E+02 0.0056 27.2 26.2 234 327-564 1-280 (307)
383 3uc1_A DNA gyrase subunit A; D 47.1 1.8E+02 0.0063 27.1 25.5 231 285-517 4-278 (327)
384 1oyi_A Double-stranded RNA-bin 43.4 9.7 0.00033 27.4 1.5 33 61-95 13-45 (82)
385 4gco_A Protein STI-1; structur 43.1 69 0.0023 24.7 6.9 101 71-177 21-124 (126)
386 4a9v_A PHOX; hydrolase, beta-p 42.1 1.2E+02 0.0042 30.9 9.9 61 318-378 476-549 (592)
387 2lni_A Stress-induced-phosphop 42.0 1.1E+02 0.0036 22.9 10.2 95 61-161 14-111 (133)
388 4fhn_B Nucleoporin NUP120; pro 42.0 55 0.0019 37.0 8.3 30 496-525 246-275 (1139)
389 3f7f_A Nucleoporin NUP120; nuc 41.1 40 0.0014 35.5 6.3 37 319-357 223-259 (729)
390 3bqo_A Telomeric repeat-bindin 38.7 1E+02 0.0035 26.3 7.2 63 99-161 68-144 (211)
391 3lc0_A Histidyl-tRNA synthetas 37.7 1.2E+02 0.0041 30.0 9.1 27 53-79 152-178 (456)
392 3mez_B Mannose-specific lectin 37.4 1.3E+02 0.0046 22.8 9.8 15 501-515 91-105 (113)
393 3mkr_A Coatomer subunit epsilo 37.0 2E+02 0.007 26.0 10.2 89 63-161 64-157 (291)
394 3f7f_A Nucleoporin NUP120; nuc 36.9 84 0.0029 33.1 7.9 31 497-527 229-259 (729)
395 2cn3_A Xyloglucanase, beta-1,4 35.1 4.3E+02 0.015 27.9 25.4 59 319-378 24-91 (737)
396 4a9v_A PHOX; hydrolase, beta-p 33.7 1.7E+02 0.0059 29.9 9.3 60 402-461 476-550 (592)
397 2lfh_A DNA-binding protein inh 33.4 21 0.00073 24.5 1.9 54 1-76 11-64 (68)
398 3ct5_A Morphogenesis protein 1 32.6 33 0.0011 28.4 3.3 34 62-95 13-51 (159)
399 1kdl_A YOPD protein; yersinia, 31.8 28 0.00096 18.3 1.7 14 64-77 5-18 (26)
400 1zvt_A Topoisomerase IV subuni 31.3 2.8E+02 0.0097 24.7 12.7 112 361-472 34-163 (256)
401 3zwu_A Alkaline phosphatase PH 31.0 1.2E+02 0.004 31.3 7.9 58 403-460 477-549 (592)
402 2xz2_A CSTF-50, isoform B; RNA 30.5 34 0.0012 23.2 2.4 39 56-94 8-47 (66)
403 3him_A Probable transcriptiona 28.5 72 0.0025 26.9 5.2 60 61-120 16-81 (211)
404 4h3o_A Lectin; cadmium, plant 28.4 1.9E+02 0.0063 21.6 8.9 13 446-458 54-66 (105)
405 1sqj_A OXG-RCBH, oligoxylogluc 27.3 5.9E+02 0.02 27.1 26.2 143 317-462 14-190 (789)
406 2j4b_A TAF5, transcription ini 26.4 94 0.0032 24.9 5.0 50 128-177 29-78 (138)
407 1ug2_A 2610100B20RIK gene prod 25.6 2E+02 0.0067 21.0 6.2 25 64-88 38-63 (95)
408 3no0_A DNA gyrase subunit A; D 24.3 3.9E+02 0.013 24.0 24.5 199 361-565 25-250 (276)
409 2jvf_A De novo protein M7; tet 23.6 35 0.0012 23.1 1.6 27 55-81 54-80 (96)
410 3bu8_A Telomeric repeat-bindin 23.5 3.6E+02 0.012 23.4 8.1 67 114-180 91-160 (235)
411 2qfc_A PLCR protein; TPR, HTH, 23.4 3.3E+02 0.011 24.3 9.1 98 64-161 76-182 (293)
412 1q1v_A DEK protein; winged-hel 22.2 1.2E+02 0.0041 20.9 4.1 36 60-95 11-52 (70)
413 2k9l_A RNA polymerase sigma fa 21.8 34 0.0012 24.1 1.3 29 64-92 31-60 (76)
414 1v32_A AT5G08430, hypothetical 21.3 50 0.0017 24.8 2.2 23 59-81 33-55 (101)
415 2cp8_A NEXT to BRCA1 gene 1 pr 21.3 46 0.0016 21.7 1.7 22 61-82 3-24 (54)
416 1elw_A TPR1-domain of HOP; HOP 21.0 2.3E+02 0.0079 20.1 8.6 91 65-161 6-99 (118)
417 1x2l_A CUT-like 2, homeobox pr 20.8 1.3E+02 0.0045 22.5 4.3 30 55-84 11-40 (101)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-52 Score=426.83 Aligned_cols=288 Identities=18% Similarity=0.317 Sum_probs=263.9
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
...+.+|.++|++++|+|++.+|++|+.||+|+|||+.++ .....+.+|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999999876 4557889999999999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
|+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||++++........|...|.++.+++++..+++++.|+.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 99999999999999999999999999999999999999999999988776666677779999999999999999999999
Q ss_pred EEEEECCCCe--eeEEecCCceEEEEECCC--------------------CCEEEEEeeCCcEEEEEecCCCceeEEEec
Q 008005 425 ILLLDREANF--ERWIEEEEVITSFSLSKD--------------------NKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
|++||+.+.. ..+..|...|.+++|+|+ +.+|++++.|+.|++||++++ ..+..+.+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~ 336 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVG 336 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEEC
Confidence 9999998876 455678899999999996 678999999999999999987 78888999
Q ss_pred cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
|...+. .+.++|++.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++ .+|+||+.||+|++|+++
T Consensus 337 h~~~v~---~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 337 HDNWVR---GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CSSCEE---EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC--
T ss_pred CCCcEE---EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Confidence 987643 44458999999999999999999999999999999999999999999999 699999999999999964
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-45 Score=358.90 Aligned_cols=291 Identities=19% Similarity=0.293 Sum_probs=262.0
Q ss_pred ceeecccccCcEEEEEEcCC----CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 264 TLQILEAHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~----g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
..+.+.+|.+.|++++|+|+ +.+|+||+.|++|+||++... .......+.+|...|.+++|++++.++++++.|+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 35677899999999999985 569999999999999999753 4455667899999999999999999999999999
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
+|++||+.+++++..+..+...+.+++|+|++++|++|+.||.|++||++.+........+...+.+++|+|++++|+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 99999999999999999998899999999999999999999999999998877666566666689999999999999999
Q ss_pred EcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 420 CREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
+.|+.|++||++++. ..+..|...|.+++|+|++++|++++.|+.|++||+++. .....+.+|...+. .+.++|
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~---~~~~sp 258 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVL---NVAFCP 258 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEE---EEEECT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceE---EEEECC
Confidence 999999999999887 344568889999999999999999999999999999987 77888888888743 444589
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++.+|++++.|+.|++||+.+++++..+.+|.+.|.+++|+|++ .+|++++.||+|++||+.
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999 799999999999999963
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-44 Score=356.93 Aligned_cols=292 Identities=18% Similarity=0.302 Sum_probs=260.0
Q ss_pred ccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
++.+...++.+|.+.|++++|+|++++|++|+.||+|+|||..++ .....+..|...|.+++|+|++++|++++.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 445677889999999999999999999999999999999999876 34567788999999999999999999999999
Q ss_pred cEEEEEcCCC----cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 340 AIRRWDVNSG----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 ~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
.|++|++.++ .....+.+|...|.++.|++++ .+++++.|+.|++||+.++........|...|.+++|+|++++
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999999875 3566788999999999999876 5899999999999999988887777778889999999999999
Q ss_pred EEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008005 416 IISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
+++++.|+.|++||++++. ..+..|...|.+++|+|++++|++++.|+.|++||+++. ..+..+.. ......+..+
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~-~~~~~~v~~~ 276 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYSH-DNIICGITSV 276 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC-TTCCSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEcc-CCcccceEEE
Confidence 9999999999999999876 455578899999999999999999999999999999886 55555542 2222235555
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.++|++.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ .+|+||+.||+|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 669999999999999999999999999999999999999999999999 7999999999999997
No 4
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-43 Score=349.57 Aligned_cols=293 Identities=27% Similarity=0.516 Sum_probs=265.4
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.....+.+|.+.|++++|+|++++|++|+.||.|++|+..++ .....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 456788999999999999999999999999999999999866 45567889999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
+||+.+++++..+..|...|.++.|+|+++.+++|+.|+.|++||++++........+...|.+++|+|+++.+++++.|
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999887776666777799999999999999999999
Q ss_pred CeEEEEECCCCee-eE--EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC
Q 008005 423 AAILLLDREANFE-RW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 423 g~i~i~d~~~~~~-~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
+.|++||++++.. .. ..+...+..++|+|++++|++++.|+.|++||+.+. +.+..+.+|......+...+..+++
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCC
Confidence 9999999998762 22 245567999999999999999999999999999987 7788888887765555555556789
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE--CCCcEEEecCC
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS--DDRTIRIWGLD 560 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~Dg~I~iW~~~ 560 (581)
.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++ .|++|++|+.+
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEecCC
Confidence 999999999999999999999999999999999999999999 6899887 69999999875
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-43 Score=347.82 Aligned_cols=291 Identities=16% Similarity=0.226 Sum_probs=257.4
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+..|..+|.+++|+|++++|++|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 456789999999999999999999999999999999999876 55677889999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEeeccCccccEEEEEEee-CCCEEEEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITD-DGKRIISIC 420 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~ 420 (581)
+||+.+++++..+..|...|.+++|+|++.+|++|+.|++|++||++++ ........|...|.+++|+| ++..+++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999765 55556667777999999999 678999999
Q ss_pred cCCeEEEEECCCCe--eeE-EecCCceEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 421 REAAILLLDREANF--ERW-IEEEEVITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~-~~~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
.|+.|++||+++.. ... ..+...+..+.|+| ++.+|++++.|+.|++||++++ ..+..+.+|...+ ..+.+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v---~~~~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNV---SFAVF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCE---EEEEE
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCE---EEEEE
Confidence 99999999998765 222 24557789999987 7789999999999999999987 8888999998874 44455
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCc-EEEEEECCCcEEEecCCc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLH-MLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s~Dg~I~iW~~~~ 561 (581)
+|++.+|++|+.||.|++||..+++++..+..|...+.+++|+|++.. ++++|++| .+.+|++.+
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 899999999999999999999999999999999999999999998844 46766655 577887764
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=352.20 Aligned_cols=302 Identities=23% Similarity=0.381 Sum_probs=249.0
Q ss_pred cceeecccccC-cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 263 QTLQILEAHSD-EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 263 ~~~~~l~~h~~-~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
.+++++.+|.+ .|++++|+|+|++||+|+.|++|+|||+..+..........+|...|.+++|+|++++|++|+.|++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 46788999998 99999999999999999999999999998653222223347899999999999999999999999999
Q ss_pred EEEEcCCC--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC---eEEeeccCccccEEEEEEeeCCCEE
Q 008005 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 342 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
++||+.++ +++..+.+|...|.+++|+|++++|++|+.|+.|++||++.. ........|...|.+++|+|++++|
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 99999877 457788899999999999999999999999999999999764 2344455667789999999999999
Q ss_pred EEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC--------------ceeE
Q 008005 417 ISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--------------KLVS 478 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~ 478 (581)
++++.|+.|++||.+... .....|...|.+++|+|++++|++++.|+.|++||..... ..+.
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 999999999999998764 3455788999999999999999999999999999974321 1122
Q ss_pred EEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc---------eEEEeccCCCCEEEEEEcCCCCcEEEEE
Q 008005 479 RYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE---------LVLALAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 479 ~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
.+.+ |... +..+.+++++..+++++.|+.|++|+...+. ......+|...|++++|+|+++.+|+||
T Consensus 246 ~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 246 TLSGFHSRT---IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EECSSCSSC---EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred EecCCCCCc---EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 3333 4444 3344458899999999999999999976542 1233468999999999999986699999
Q ss_pred ECCCcEEEecCCccccccc
Q 008005 549 SDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 549 s~Dg~I~iW~~~~~~~~~~ 567 (581)
+.||+|++|++.+++....
T Consensus 323 s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp ETTSCEEEEEECC------
T ss_pred CCCCcEEEEEecCCCCccc
Confidence 9999999999998775543
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-43 Score=352.67 Aligned_cols=292 Identities=17% Similarity=0.274 Sum_probs=257.2
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
..+....+.+|.+.|++++|+|++++||||+.||+|+|||..+. .....+..|...|.+++|+|++.+|++++.|+.
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 34567889999999999999999999999999999999998766 344667789999999999999999999999999
Q ss_pred EEEEEcCCC------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee--C
Q 008005 341 IRRWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD--D 412 (581)
Q Consensus 341 i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~--~ 412 (581)
+++|++... .....+..|...|.++.|+|++..|++++.|++|++||+++++.......|...|.+++++| +
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999998653 34566778999999999999999999999999999999998887777777777899999987 5
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008005 413 GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
++.+++++.|+.|++||++++. ..+..|...|.+++|+|++.+|++++.|+.|++||++.. ..+..+..+.. ...+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~~-~~~~ 287 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKESI-IFGA 287 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTTC-CSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCCc-ccce
Confidence 7899999999999999999877 445568899999999999999999999999999999886 55555544332 2224
Q ss_pred EeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
..+.++|++.+|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++ .+|++|+.||+|++|+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 445559999999999999999999999999999999999999999999999 7999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.5e-42 Score=338.15 Aligned_cols=291 Identities=20% Similarity=0.295 Sum_probs=253.0
Q ss_pred ceeecccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCe--eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 264 TLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...++.+|.+.|++++|+|++ ++|++|+.|++|++|++..... -.....+.+|...|.+++|+|++++|++|+.|++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 466889999999999999965 7999999999999999874322 2346778999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC------CC
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD------GK 414 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~------~~ 414 (581)
|++||+.+++++..+.+|...|.+++|+|++..+++|+.|++|++||+++..+.... .|...+.++.+.|. +.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC-CCSSCEEEEEECCC------CC
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ccCCcEEEEEEccCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999877665554 45568999999985 45
Q ss_pred EEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 415 RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
.+++++.|+.|++||+++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.+. +.+..+..+. . +..
T Consensus 168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~-~---v~~ 242 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD-E---VFS 242 (319)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS-C---EEE
T ss_pred EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC-c---EEE
Confidence 89999999999999999877 455678999999999999999999999999999999987 6677776543 2 444
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec--------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA--------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+.++|++.++++++.++ +++|++..+..+..+. .|...+.+++|+|+| ++|++|+.||+|++|++.+.
T Consensus 243 ~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 243 LAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCceEEEEEEeec
Confidence 55599999999887654 9999998887776654 346679999999999 79999999999999999764
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-43 Score=358.11 Aligned_cols=298 Identities=19% Similarity=0.333 Sum_probs=256.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...+.+++.+|.+.|++++|+|++++|++|+.||+|+|||..++ .....+..|...|.+++|+|++++|++|+.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 34567889999999999999999999999999999999999876 556778899999999999999999999999999
Q ss_pred EEEEEcCCCc-------EEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeec-----cCccccEEEE
Q 008005 341 IRRWDVNSGE-------CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWK-----GQKTLRISDM 407 (581)
Q Consensus 341 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~i 407 (581)
|++||+.+.. ....+.+|...+.++.|.|++ ..|++|+.|++|++||+.++...... ..|...|.++
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999987532 345577899999999999964 56999999999999999887665443 4566789999
Q ss_pred EEee-CCCEEEEEEcCCeEEEEECCCC-e--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 408 AITD-DGKRIISICREAAILLLDREAN-F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 408 ~~~~-~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
++++ +++.+++++.|+.|++||++.. . ..+..|...|.+++|+|++++|++++.|+.|++||++++ ..+..+..+
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~ 290 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNRE 290 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEEECCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEEeccc
Confidence 9987 8899999999999999999743 2 456678999999999999999999999999999999987 666666544
Q ss_pred ccc----eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe----ccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 484 KRA----RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL----AGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 484 ~~~----~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
... ...+..+.++|++.++++|+.||.|++||..+++.+..+ .+|.+.|++++|+|++ .+|+||+.||+|+
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLK 369 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEE
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-CEEEEeeCCCCEE
Confidence 321 111334455999999999999999999999999988777 6899999999999999 7999999999999
Q ss_pred EecCCccc
Q 008005 556 IWGLDQIN 563 (581)
Q Consensus 556 iW~~~~~~ 563 (581)
+|++...+
T Consensus 370 iW~~~~~~ 377 (380)
T 3iz6_a 370 IWAFSGHR 377 (380)
T ss_dssp EEECCSSS
T ss_pred EEecCCCc
Confidence 99998654
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8e-42 Score=340.72 Aligned_cols=296 Identities=19% Similarity=0.286 Sum_probs=249.3
Q ss_pred ccceeecccccCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEEcccCCe----eeEEEEecCCCCCEEEEEeCCCCCe
Q 008005 262 SQTLQILEAHSDEVWFLQF-----SH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPNDHQ 331 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~-----s~-~g~~lasgs~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~ 331 (581)
.....++.+|.+.|++++| ++ ++++||+|+.|++|+|||+..... ......+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4467789999999999999 77 999999999999999999975321 2355678999999999999999999
Q ss_pred EEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec--cCccccEEEEEE
Q 008005 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAI 409 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~i~~ 409 (581)
+++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+......... ..+...|.+++|
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999865544333 245668999999
Q ss_pred eeCC----------CEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008005 410 TDDG----------KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 410 ~~~~----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
+|++ .++++++.|+.|++||..... ..+..|...|.+++|+|++++|++++.|+.|++||+........
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 9987 789999999999999965444 45567889999999999999999999999999999965434444
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEE--Eec-----------cCCCCEEEEEEcCCCCcEE
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL--ALA-----------GHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~-----------~h~~~v~~l~~~p~~~~~l 545 (581)
.+.. ... +..+.++|++.+++++ .|+.|++||+.+++... .+. +|...|++++|+|++ .+|
T Consensus 251 ~~~~-~~~---v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l 324 (343)
T 2xzm_R 251 EFDA-GST---INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG-KKL 324 (343)
T ss_dssp EEEC-SSC---EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS-CCE
T ss_pred eecC-CCc---EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC-CeE
Confidence 4432 222 4445558999887755 57789999998766433 443 688899999999999 699
Q ss_pred EEEECCCcEEEecCCccc
Q 008005 546 ASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~ 563 (581)
++|+.||+|++|++.++.
T Consensus 325 ~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEETTSEEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEccC
Confidence 999999999999987653
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=344.76 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=235.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEccc--------CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE--------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~--------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
.|...|.+++|+|||++|++++ |+++++||... ............|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4777899999999999999887 77788887421 00000111223356789999999985 78899999999
Q ss_pred EEEEcCCCcEEEE----EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-EE
Q 008005 342 RRWDVNSGECLHV----YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RI 416 (581)
Q Consensus 342 ~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l 416 (581)
+|||+.+++.... ..+|...|.+++|+|++++|++|+.|++|++||+.+++.......|...|.+++|++++. .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999999875443 347899999999999999999999999999999999988888888888999999999885 78
Q ss_pred EEEEcCCeEEEEECCCCee-e---EEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 417 ISICREAAILLLDREANFE-R---WIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~-~---~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++++.|++|++||++++.. . ...+...+.+++|+|+ +++|++|+.|+.|++||++++ +.+..+.+|...+..
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~-- 262 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTG-- 262 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEE--
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEE--
Confidence 9999999999999998772 2 2345567899999994 578889999999999999987 788899999887444
Q ss_pred eeecCCCC-cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc
Q 008005 492 SCFGGFEQ-AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 492 ~~~~~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+.++|++ ++|++|+.|++|+|||+.++++. .+.+|.+.|++++|+|++..+|+|+|.||+|++|++.+..+..
T Consensus 263 -v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~ 336 (344)
T 4gqb_B 263 -LVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPA 336 (344)
T ss_dssp -EEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-----
T ss_pred -EEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCC
Confidence 4448887 68999999999999999988765 5789999999999999997788999999999999998776543
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-41 Score=364.49 Aligned_cols=309 Identities=21% Similarity=0.309 Sum_probs=257.1
Q ss_pred ceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
....+.+|.+.|++++|+|++. .|++|+.|++|++||..+. +....+.+|...|.+++|+|++++|++++.|++|+
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 4567889999999999999987 5999999999999998654 56678999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEe-------cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe--------------------
Q 008005 343 RWDVNSGECLHVYE-------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-------------------- 395 (581)
Q Consensus 343 vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-------------------- 395 (581)
+||+.+++++..+. .|...|.+++|+|++.+|++++.|++|++||+.+++...
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 99999999988884 689999999999999999999999999999998654322
Q ss_pred -----------------------eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE---------------
Q 008005 396 -----------------------WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW--------------- 437 (581)
Q Consensus 396 -----------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------- 437 (581)
....|...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~ 375 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence 123466789999999999999999999999999987543100
Q ss_pred ---------------------------------------------------------------------EecCCceEEEE
Q 008005 438 ---------------------------------------------------------------------IEEEEVITSFS 448 (581)
Q Consensus 438 ---------------------------------------------------------------------~~~~~~i~~~~ 448 (581)
..+...+.+++
T Consensus 376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va 455 (611)
T 1nr0_A 376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 455 (611)
T ss_dssp CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence 01123467899
Q ss_pred ECCCCCEEEEEeeCCcEEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-CceEEE--
Q 008005 449 LSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-GELVLA-- 524 (581)
Q Consensus 449 ~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~-- 524 (581)
|+|++++|++++.|+.|++||+.+... .... .+|... +..+.++|++++|++++.|+.|++||+.+ +++...
T Consensus 456 ~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~---v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 456 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC---EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc---eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 999999999999999999999987521 1223 566665 44455599999999999999999999987 655543
Q ss_pred eccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc-c------c-ccCCCceEEecCCC
Q 008005 525 LAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM-K------H-RDQSNGIVHHCNGR 580 (581)
Q Consensus 525 ~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~-~------~-~~~~~~~~~~~~G~ 580 (581)
+.+|...|++++|+|++ ++|+|++.|++|++|+++++.. . + ......+.|+|||+
T Consensus 532 ~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp CCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE
T ss_pred eeecccceeEEEECCCC-CEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE
Confidence 34599999999999999 7999999999999999987642 1 1 23356678888875
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.1e-42 Score=344.39 Aligned_cols=289 Identities=18% Similarity=0.218 Sum_probs=234.3
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeC------CCeEEEEEcccCCee-eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSK------DQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~------dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
...+|...|++++|||||++||+|+. |+.|++|+..++... .......+|...|.+++|+|++. +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 34579999999999999999999997 778999987654321 12233456889999999999875 55678899
Q ss_pred cEEEEEcCCCcEEE----EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-
Q 008005 340 AIRRWDVNSGECLH----VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK- 414 (581)
Q Consensus 340 ~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~- 414 (581)
+|++||+.+++... ....|...|.+++|+|++++|++|+.|+.|++||++++........|...|.+++|++++.
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 99999999887543 3347889999999999999999999999999999999888887778888999999999875
Q ss_pred EEEEEEcCCeEEEEECCCCee----eEEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008005 415 RIISICREAAILLLDREANFE----RWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
.+++++.|+.|++||++++.. ....+...+.+++|+|+ +.+|++++.|+.|++||+++. +.+..+.+|...+..
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITG 274 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEE
Confidence 788999999999999988762 22345677999999997 568889999999999999987 778888888887444
Q ss_pred EEeeecCCCC-cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC-CCCcEEEEEECCCcEEEecCCcc
Q 008005 490 IRSCFGGFEQ-AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 490 i~~~~~~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+.++|++ .+|++|+.||+|+|||+.+++++..+ +|.+.|++++|+| ++ .+|+|+|.||+|++|++...
T Consensus 275 ---l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 275 ---LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ---EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC--
T ss_pred ---EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCC
Confidence 3347765 68999999999999999999887665 7999999999999 55 79999999999999999754
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-41 Score=340.84 Aligned_cols=284 Identities=25% Similarity=0.466 Sum_probs=243.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC------------------CCEEEEEeCCCCCe
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR------------------KPVFTVSWSPNDHQ 331 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~V~~l~~sp~~~~ 331 (581)
+|.+.|++++|+|||++||+|+ +++++||++.++.. ...+..|. ..|.+++|+|++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 6999999999999999999986 78999999987643 33343332 34999999999999
Q ss_pred EEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee
Q 008005 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~ 411 (581)
|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++..|++++.|++|++||++++........+ ..+.+++++|
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~ 216 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSP 216 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999988765554443 4799999999
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCee--eE-------EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-------
Q 008005 412 -DGKRIISICREAAILLLDREANFE--RW-------IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP------- 474 (581)
Q Consensus 412 -~~~~l~~~~~dg~i~i~d~~~~~~--~~-------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------- 474 (581)
+++++++++.|+.|++||.+++.. .. ..|...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 296 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccC
Confidence 899999999999999999988762 11 3577889999999999999999999999999997631
Q ss_pred ----ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcC------CCCcE
Q 008005 475 ----KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP------ANLHM 544 (581)
Q Consensus 475 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p------~~~~~ 544 (581)
.....+.+|...+. .+.+++++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|++ ++ .+
T Consensus 297 ~~~~~~~~~~~~h~~~v~---~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~-~~ 372 (393)
T 1erj_A 297 PNSGTCEVTYIGHKDFVL---SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY-NV 372 (393)
T ss_dssp ----CEEEEEECCSSCEE---EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-EE
T ss_pred CCCCcceEEEecccCcEE---EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC-CE
Confidence 23456677776533 344488999999999999999999999999999999999999999986 56 69
Q ss_pred EEEEECCCcEEEecCCcc
Q 008005 545 LASASDDRTIRIWGLDQI 562 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~ 562 (581)
|+||+.||+|+||++...
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998654
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-40 Score=328.79 Aligned_cols=292 Identities=21% Similarity=0.331 Sum_probs=232.6
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe-cC-CCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SG-HRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
.+++..+.+|.+.|++++|+|+ +||+|+.|++|++|++..+. ......+ .+ |...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 3467889999999999999998 99999999999999997542 2344445 44 999999999999999999999999
Q ss_pred cEEEEEcCC-------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC----CeEEeeccCccccEEEEE
Q 008005 340 AIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELESWKGQKTLRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~i~ 408 (581)
+|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .+.......|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999853 456778889999999999999999999999999999999942 234445556777999999
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCC--CCEEEEEeeCCcEEEEEecCCC-------c
Q 008005 409 ITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDP-------K 475 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~-------~ 475 (581)
|+|++.+|++++.|++|++||..+.. ..+..|...|.+++|+|+ +.+|++++.|+.|++||+.... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 99999999999999999999987653 344578899999999998 7789999999999999997531 1
Q ss_pred eeEEEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc--eEE-EeccCCC-CEEEEEEcC--CCCcEEEEE
Q 008005 476 LVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE--LVL-ALAGHSG-SVNCVSWNP--ANLHMLASA 548 (581)
Q Consensus 476 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~--~~~-~~~~h~~-~v~~l~~~p--~~~~~l~s~ 548 (581)
....+.. |...+..+ .++++ .+|++++.||.|++||..+++ ... .+.+|.. .|++++|+| ++ .+|+|+
T Consensus 241 ~~~~~~~~h~~~v~~v---~~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~las~ 315 (330)
T 2hes_X 241 CEAILPDVHKRQVYNV---AWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILATG 315 (330)
T ss_dssp EEEECCSCCSSCEEEE---EECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEEEE
T ss_pred EeeecccccccceEEE---EEcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEEEe
Confidence 2233333 65554433 33554 489999999999999988774 333 3467887 899999999 56 799999
Q ss_pred ECCCcEEEecCCc
Q 008005 549 SDDRTIRIWGLDQ 561 (581)
Q Consensus 549 s~Dg~I~iW~~~~ 561 (581)
+.||+|++|++++
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999875
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9e-41 Score=359.25 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=254.8
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--- 338 (581)
.+....+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|.+++|+|++++|++++.+
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence 345678899999999999999999999999999999999965432 3455788999999999999999999998865
Q ss_pred -CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE
Q 008005 339 -EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 339 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 416 (581)
+.|++|| +++....+.+|...|.+++|+|++. .|++|+.|++|++||....+.......|...|.+++|+|++++|
T Consensus 128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence 3677776 5667778889999999999999987 59999999999999998887777777788899999999999999
Q ss_pred EEEEcCCeEEEEECCCCe-eeEE--------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc-
Q 008005 417 ISICREAAILLLDREANF-ERWI--------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA- 486 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~-~~~~--------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 486 (581)
++++.|++|++||..++. .... .|...|.+++|+|++++|++++.|+.|++||+.++ +.+..+..+...
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE 284 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc
Confidence 999999999999998776 2222 58889999999999999999999999999999987 666666543221
Q ss_pred eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 487 RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 487 ~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.......+ ++..+++++.||.|++||..+++....+.+|...|++++|+|++ .+|++++.|++|++||+.++...
T Consensus 285 ~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 285 DQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp GCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE
T ss_pred ceeEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcee
Confidence 11222333 67889999999999999999999888999999999999999999 79999999999999999987654
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-39 Score=323.10 Aligned_cols=293 Identities=17% Similarity=0.268 Sum_probs=250.8
Q ss_pred ceeecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccCCe--eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...+|+||.+.|++|+|+|+ +++||||+.|++|+|||+..... ......+.+|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45679999999999999997 68999999999999999975432 2356778999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EeeccCccccEEEEEEeeCC--CEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDG--KRII 417 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~i~~~~~~--~~l~ 417 (581)
|++|+............+...+..+.+++++..+++++.|+.+++||+..... ......+...+..++|++++ ..++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 99999999999888888888999999999999999999999999999976544 33445566789999998765 5788
Q ss_pred EEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
+++.|+.|++||.++.. ..+..|...|++++|+|++++|++++.|+.|++||+++. ..+..+..+.. +..+.+
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~----v~~~~~ 264 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDGGDI----INALCF 264 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECSSC----EEEEEE
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecCCce----EEeeec
Confidence 99999999999999887 455578899999999999999999999999999999987 66677765542 444455
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEec---------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALA---------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+|++.++ +++.|+.|++||+.++..+..+. +|...|++++|+|++ .+|++|+.||+|+|||+++|+
T Consensus 265 ~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 265 SPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred CCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence 7776654 56679999999999887766553 688899999999999 799999999999999998875
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-40 Score=321.46 Aligned_cols=271 Identities=17% Similarity=0.280 Sum_probs=235.7
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
....++.+|.+.|++++|+|++++|++++.||+|++||+.++..+..+..|...|.++.|+|++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECC-CCCEEEEEeeCC
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQ 463 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~ 463 (581)
+.+++.......|...|.+++|+|+++++++++.|++|++||++++. ..+..|...|.+++|+| ++.+|++++.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 99887777677777899999999999999999999999999998764 34557889999999999 678999999999
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCc
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
.|++||+...........++...+..+.... .+++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++ .
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~-~ 241 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYP-LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-P 241 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECC-STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-S
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEE-cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC-C
Confidence 9999999877444444445555544443332 4588899999999999999999999999999999999999999999 6
Q ss_pred EEEEEECCCcEEEecCCccccccccC-----CCceEEecCCC
Q 008005 544 MLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHCNGR 580 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~~G~ 580 (581)
+|++++.||+|++||+.++++..... ...+.++|+|+
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG
T ss_pred EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC
Confidence 99999999999999999988765433 23456666653
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-39 Score=347.00 Aligned_cols=285 Identities=26% Similarity=0.501 Sum_probs=255.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
..+.+..+.+|.+.|++++|+|++++|++++.|++|++||.... ....+.+|...|.+++|+|++++|++++.||.
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 44567788999999999999999999999999999999998642 34567899999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
|++||. +++.+..+..|...|.+++|+|++++|++++.|+.|++||.....+... ..+...|.+++|+|+++++++++
T Consensus 368 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 368 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp EEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe-cCCCCCeEEEEECCCCCEEEEEc
Confidence 999995 6788889999999999999999999999999999999999766555444 44566899999999999999999
Q ss_pred cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC
Q 008005 421 REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 421 ~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.|+.|++||..... .....|...|.+++|+|++++|++++.|+.|++||... +.+..+.+|...+. .+.++|++
T Consensus 446 ~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~---~l~~s~dg 520 (577)
T 2ymu_A 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVR---GVAFSPDG 520 (577)
T ss_dssp TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEE---EEEECTTS
T ss_pred CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEE---EEEEcCCC
Confidence 99999999987665 56667899999999999999999999999999999643 78888999988744 44459999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++|++++.||.|++||. +++++..+.+|.+.|++++|+|++ ++|+|++.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg-~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEeC
Confidence 99999999999999995 788999999999999999999999 7999999999999997
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.3e-39 Score=342.61 Aligned_cols=308 Identities=26% Similarity=0.496 Sum_probs=267.8
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
..+.+..+.+|...|++++|+|++++|++++.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+.
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 3456788999999999999999999999999999999999753 345678899999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
|++||.. +..+..+..|...+.+++|+|++..+++++.|+.|++||..+..+... ..+...|.+++|+|++++|++++
T Consensus 327 i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 327 VKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe-cCCCCCeEEEEECCCCCEEEEEe
Confidence 9999976 455677888999999999999999999999999999999766555444 44556899999999999999999
Q ss_pred cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC
Q 008005 421 REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 421 ~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.|+.|++||..... .....|...|++++|+|++++|++++.|+.|++||... +.+..+.+|...+ ..+.++|++
T Consensus 405 ~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v---~~~~~spd~ 479 (577)
T 2ymu_A 405 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSV---RGVAFSPDG 479 (577)
T ss_dssp TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCE---EEEEECTTS
T ss_pred CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCE---EEEEEcCCC
Confidence 99999999976555 55667899999999999999999999999999999754 6778888888774 444559999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc----cccCCCceEE
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK----HRDQSNGIVH 575 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~----~~~~~~~~~~ 575 (581)
++|++++.|+.|++||. +++++..+.+|...|++++|+|++ ++|++++.||.|++||.....+. +.....++.|
T Consensus 480 ~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEE
Confidence 99999999999999994 788999999999999999999999 79999999999999997543222 2334567889
Q ss_pred ecCCCC
Q 008005 576 HCNGRI 581 (581)
Q Consensus 576 ~~~G~~ 581 (581)
+|||+.
T Consensus 558 s~dg~~ 563 (577)
T 2ymu_A 558 SPDGQT 563 (577)
T ss_dssp CTTSSC
T ss_pred cCCCCE
Confidence 999874
No 21
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-39 Score=323.18 Aligned_cols=292 Identities=19% Similarity=0.287 Sum_probs=255.6
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
...+.+|.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4568899999999999999999999999999999999876 4567788999999999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeE-----------EeeccCccc--cEEE
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGREL-----------ESWKGQKTL--RISD 406 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~i~~ 406 (581)
|+.+++.+..+. +...+.+++|+|++..+++++.+ +.|.+||+..... ......+.. .+.+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 999999998887 77899999999999999999999 9999999854321 111112222 7999
Q ss_pred EEEeeCCCEEEEEEcCCeEEEEECCC-Ce--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 407 MAITDDGKRIISICREAAILLLDREA-NF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 407 i~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
++|+|+++.+++++.||.|++||+++ .. .....+...|.+++|+|++++|++++.|+.|++||+.+. ..+..+. +
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~ 258 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-QVLKKYE-T 258 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-C
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-ceeeeec-C
Confidence 99999999999999999999999998 44 445568889999999999999999999999999999987 6666666 3
Q ss_pred ccceeEEEeeecCCCCcEEEEEeCCC--------------cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 484 KRARFVIRSCFGGFEQAFIASGSEDS--------------QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg--------------~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
... +..+.++|++.++++++.++ .+++||..+++.+..+.+|.+.|++++|+|++ .+|++++
T Consensus 259 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~ 334 (369)
T 3zwl_B 259 DCP---LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-TSYASGG 334 (369)
T ss_dssp SSC---EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred CCC---ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC-CEEEEEc
Confidence 333 34455589999999999998 89999999999999999999999999999999 7999999
Q ss_pred CCCcEEEecCCcccccc
Q 008005 550 DDRTIRIWGLDQINMKH 566 (581)
Q Consensus 550 ~Dg~I~iW~~~~~~~~~ 566 (581)
.||.|++|+++++....
T Consensus 335 ~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 335 EDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp TTSEEEEEEECHHHHTC
T ss_pred CCCeEEEEECccccchh
Confidence 99999999999866543
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-38 Score=312.51 Aligned_cols=284 Identities=14% Similarity=0.221 Sum_probs=250.7
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec--CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
..+|.+.|++++|+|++++|++++ ||.|++|++.++........+. +|...|.+++|+|++++|++++.||.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999998 9999999998765433344444 7999999999999999999999999999999
Q ss_pred cCCCc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC
Q 008005 346 VNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (581)
Q Consensus 346 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 423 (581)
+.+++ ....+..|...+.+++|+|+++.+++++.||.|++||+++++.......+...+.+++|+|+++.+++++.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 99887 6677788899999999999999999999999999999998887777777777999999999999999999999
Q ss_pred eEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE
Q 008005 424 AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 424 ~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
.|++||+++.. .....+...+.+++|+|+++++++++.++.|++||+.+. . ...+..|... +..+.++|++++|
T Consensus 206 ~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~---v~~~~~~~~~~~l 280 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-D-KYQLHLHESC---VLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-C-EEEECCCSSC---EEEEEECTTSSEE
T ss_pred cEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-C-eEEEcCCccc---eeEEEECCCCCEE
Confidence 99999999887 555678889999999999999999999999999999886 3 3456667665 4444458999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
++++.||.|++||+.+++.+... .|...|.+++|+|++ .+|++++.||.|++|++
T Consensus 281 ~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS-CEEEEEETTSCEEEEEE
T ss_pred EEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC-CEEEEecCCCeEEEEEE
Confidence 99999999999999999888554 588999999999999 79999999999999996
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-38 Score=347.66 Aligned_cols=290 Identities=19% Similarity=0.311 Sum_probs=246.5
Q ss_pred eeecccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCe--eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 265 LQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
...+++|.+.|++++|+|++ ++|+||+.|++|+||++..... -.....+.+|...|.+++|+|++++|++|+.||+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 45688999999999999865 7999999999999999975432 13456788999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec---cCccccEEEEEEeeCC--CEE
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITDDG--KRI 416 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~i~~~~~~--~~l 416 (581)
++||+.++++...+..|...|.+++|+|+++.|++|+.|++|++||+.+....... ..|...|.+++|+|++ ..+
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99999999999999999999999999999999999999999999999766544433 3456689999999987 689
Q ss_pred EEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008005 417 ISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
++++.|+.|++||+++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.++ +.+..+..+. . +..+.
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~-~---v~~~~ 609 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANS-V---IHALC 609 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSS-C---EEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC-c---EEEEE
Confidence 999999999999999877 445578899999999999999999999999999999987 5555554332 2 44555
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC-------------------CCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-------------------GSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-------------------~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
++|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|++ .+|++|+.||+|+
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-STLFSGYTDGVIR 687 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-CEEEEEcCCCeEE
Confidence 589998888776 4569999999998887775432 137899999999 7999999999999
Q ss_pred EecCCc
Q 008005 556 IWGLDQ 561 (581)
Q Consensus 556 iW~~~~ 561 (581)
+|++..
T Consensus 688 iW~i~~ 693 (694)
T 3dm0_A 688 VWGIGR 693 (694)
T ss_dssp EEEC--
T ss_pred EEeccC
Confidence 999863
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-39 Score=327.81 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=251.8
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC---eeeEEEEecCCCCCEEEEEeCCC----C---CeE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG---QVSLKHRLSGHRKPVFTVSWSPN----D---HQL 332 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~---~~~~~~~~~~h~~~V~~l~~sp~----~---~~l 332 (581)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.+.. .......+.+|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34677889999999999999 799999999999999998753 12245677799999999999999 9 999
Q ss_pred EEeeCCCcEEEEEcCCCcE-----EEEEecC-----CCeEEEEEEe----cCCCe-EEEEeCCCcEEEEeCCC------C
Q 008005 333 LTCGQEEAIRRWDVNSGEC-----LHVYEKT-----GVGLISCGWF----LDGGG-IFAGMTDKSICLWDLDG------R 391 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~sg~~dg~i~vwd~~~------~ 391 (581)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++.. |++++.||.|++||+.. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5899999999 99999 99999999999999976 3
Q ss_pred eEE------eec------cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEe---c---CCceEEEEECC
Q 008005 392 ELE------SWK------GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIE---E---EEVITSFSLSK 451 (581)
Q Consensus 392 ~~~------~~~------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~---~---~~~i~~~~~sp 451 (581)
... .+. ..+...+.+++|+|++ .+++++.|+.|++||+++.. ..+.. | ...+.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 322 221 3456689999999999 99999999999999999877 33344 6 88999999999
Q ss_pred CCCEEEEEeeC---CcEEEEEecCCCceeEEEec-------------cccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 452 DNKYLLVNLIN---QEIHLWSIESDPKLVSRYKG-------------HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 452 ~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
++++|++++.| +.|++||+.+. +.+..+.+ |... +..+.++|++++|++++.||.|++||
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCc---EEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999 99999999987 77788877 7666 34445589999999999999999999
Q ss_pred CCCCceEEEec------cC---------------CCCEEEEEEcCCCC---------cEEEEEECCCcEEEecCCccc
Q 008005 516 RYTGELVLALA------GH---------------SGSVNCVSWNPANL---------HMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 516 ~~~~~~~~~~~------~h---------------~~~v~~l~~~p~~~---------~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+.+++.+..+. +| ...|++++|+|++. .+|++++.||.|++|++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999999999 88 99999999999972 499999999999999998763
No 25
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-38 Score=309.20 Aligned_cols=293 Identities=17% Similarity=0.233 Sum_probs=253.4
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+.+..+.+.+|.+.|++++| |++.+|++|+.||.|++||+.++ .....+..|...|.+++|+|++++|++++.||.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 34678899999999999999 99999999999999999999765 456677889999999999999999999999999
Q ss_pred EEEEEcCCC---cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEee-CCCEE
Q 008005 341 IRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRI 416 (581)
Q Consensus 341 i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l 416 (581)
|++|++... +....+..|...|.++.| +++.+++++.||.|++|| ..........+...+.++++.| +++.+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 999998764 567788899999999999 577999999999999999 4444444555667899999998 99999
Q ss_pred EEEEcCCeEEEEECCCCeeeEEe-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 417 ISICREAAILLLDREANFERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
++++.|+.|++||.......... +...+.+++|+|++. +++++.++.|++||+++. +.+..+.+|...+. .+.+
T Consensus 159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~---~~~~ 233 (313)
T 3odt_A 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVY---CIKL 233 (313)
T ss_dssp EEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEE---EEEE
T ss_pred EEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEE---EEEE
Confidence 99999999999995554444444 888999999999998 899999999999999987 78888888887744 4444
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+|++ .+++++.||.|++||+.+++.+..+..|...|++++|+|++ . +++++.||.|++|++++++......
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 8888 58899999999999999999999999999999999999999 4 6679999999999999988765544
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-38 Score=321.24 Aligned_cols=291 Identities=16% Similarity=0.191 Sum_probs=240.9
Q ss_pred cceeecccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCc
Q 008005 263 QTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~ 340 (581)
+....+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.++.. .......+|...|.+++|+| ++.+|++++.|+.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 3466788999999999999999 8999999999999999986543 23333457999999999999 7799999999999
Q ss_pred EEEEEcCCCcEEEEEecC---CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-EE
Q 008005 341 IRRWDVNSGECLHVYEKT---GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RI 416 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l 416 (581)
|++||+.+ .....+..+ ...|.+++|+|++..|++|+.|+.|++||++......+. .+...|.+++|+|+++ .+
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEE
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEE
Confidence 99999986 555566544 378999999999999999999999999999765555544 4556999999999999 99
Q ss_pred EEEEcCCeEEEEECCC----Ce-eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc----
Q 008005 417 ISICREAAILLLDREA----NF-ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA---- 486 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~----~~-~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---- 486 (581)
++++.|+.|++||+++ .. .....+...|.+++|+| ++++|++++.|+.|++||+++. .....+.+|...
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCCCTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-cccccccccccccccc
Confidence 9999999999999987 33 45557899999999999 9999999999999999999887 444555544311
Q ss_pred ---e-------eEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--CCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 487 ---R-------FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--HSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 487 ---~-------~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
. ..+..+.+++++++ +|+.||.|++||+.+++.+..+.+ |.+.+..++|+|++ .+|++++ ||.|
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i 375 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNI 375 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEE
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc-cEEEEec-CCcE
Confidence 0 01112333566666 778999999999999999999987 56778888999999 6999997 9999
Q ss_pred EEecCCc
Q 008005 555 RIWGLDQ 561 (581)
Q Consensus 555 ~iW~~~~ 561 (581)
++|++++
T Consensus 376 ~iw~~~~ 382 (383)
T 3ei3_B 376 LIWNRED 382 (383)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9999975
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-38 Score=320.78 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=247.7
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+..|.++|++++|+|++++||+|+.|+.|++||+.++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 34569999999999999999999999999999999864 33467788899999999999999999999999999999999
Q ss_pred CCCcEEEEE--ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe----EEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 347 NSGECLHVY--EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 347 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
.+++....+ ..|...|.+++|+|++++|++++.|+.|++||++... .......+...|.+++|+|+++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 998765544 5688899999999999999999999999999997654 3444455667899999999999999999
Q ss_pred cCCeEEEEECC------------------CCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE
Q 008005 421 REAAILLLDRE------------------ANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY 480 (581)
Q Consensus 421 ~dg~i~i~d~~------------------~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 480 (581)
.|+.|++||++ .+. ..+..+...+.+++|+|++++|++++.|+.|++||+++. +.+..+
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~ 240 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATL 240 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEE
Confidence 99999999964 233 334467889999999999999999999999999999987 788888
Q ss_pred eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC--Cce--------------------------------E----
Q 008005 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT--GEL--------------------------------V---- 522 (581)
Q Consensus 481 ~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~--~~~--------------------------------~---- 522 (581)
..|...+. .+.++|++.++++| .|+.|++|++.+ ++. .
T Consensus 241 ~~~~~~v~---~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 241 ASETLPLL---AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp ECSSCCEE---EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred ccCCCCeE---EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 88876643 44447889988888 999999999877 421 0
Q ss_pred --EEe-ccCCCCEEEEEEcCCCC---cEEEEEECCCcEEEecCCcccc
Q 008005 523 --LAL-AGHSGSVNCVSWNPANL---HMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 523 --~~~-~~h~~~v~~l~~~p~~~---~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..+ .+|.+.|++++|++..+ .+|+|++.||.|++|++.+++.
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 223 48999999999875543 5999999999999999987653
No 28
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-38 Score=323.62 Aligned_cols=264 Identities=21% Similarity=0.387 Sum_probs=238.4
Q ss_pred EecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
.+.+|..+|++++|+|++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
........|...|.+++|+|+++++++++.|++|++||++++. ..+..|...+.++.++|++.++++++.|+.|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 8777777778899999999999999999999999999999887 45667889999999999999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCC--------------------CcEEEEEeCCCcEEEEeCCCCceEEEeccCC
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFE--------------------QAFIASGSEDSQVYIWHRYTGELVLALAGHS 529 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 529 (581)
+.+. .....+.+|...+..+. ++|+ +.+|++|+.||.|++||+.++.++..+.+|.
T Consensus 263 ~~~~-~~~~~~~~h~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 338 (410)
T 1vyh_C 263 VATK-ECKAELREHRHVVECIS---WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338 (410)
T ss_dssp TTTC-CEEEEECCCSSCEEEEE---ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCCC-ceeeEecCCCceEEEEE---EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence 9987 77788888887754443 3553 6799999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecCCC
Q 008005 530 GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 530 ~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
..|++++|+|++ .+|++++.||+|++||+.+++.... .....+.|+|+|+
T Consensus 339 ~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 339 NWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp SCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred CcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC
Confidence 999999999999 7999999999999999988776533 3356677888875
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=318.74 Aligned_cols=294 Identities=12% Similarity=0.184 Sum_probs=240.2
Q ss_pred ceeecccccCcEEEEEEcCCCCEE-EEEeC---CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC---CCeEEEee
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYL-ASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN---DHQLLTCG 336 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~l-asgs~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~l~s~~ 336 (581)
....+.+|.+.|++++|+|++..+ ++|+. ||.|+|||+.++... . ....+|...|.+++|+|+ +.+|++++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-L-LREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-E-EEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-c-eeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 345668899999999999999655 56655 999999999865422 2 223378999999999998 69999999
Q ss_pred CCCcEEEEEcCCCc-EEEEEecCCCeEEEEEE------ecCCCeEEEEeCCCcEEEEeCCCCe--EEeecc---CccccE
Q 008005 337 QEEAIRRWDVNSGE-CLHVYEKTGVGLISCGW------FLDGGGIFAGMTDKSICLWDLDGRE--LESWKG---QKTLRI 404 (581)
Q Consensus 337 ~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~---~~~~~i 404 (581)
.||.|++||+.+++ .+..+..|...|.++.| +|+++.|++++.||.|++||++.+. ...+.. .....+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999999988 88889999999999965 5789999999999999999998654 333322 123378
Q ss_pred EEEE----EeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECC---CCCEEEEEeeCCcEEEEEecCCCce
Q 008005 405 SDMA----ITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSK---DNKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 405 ~~i~----~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp---~~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.+++ |+|+++++++++.|+.|++||+++.. .....+...+.+++|+| ++.++++++.|+.|++||+++. ..
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~ 246 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HP 246 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ET
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-Cc
Confidence 8888 78899999999999999999999988 55567889999999999 9999999999999999999875 33
Q ss_pred eEEE-----eccccceeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCC-------------------ceEEEeccCCCC
Q 008005 477 VSRY-----KGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTG-------------------ELVLALAGHSGS 531 (581)
Q Consensus 477 ~~~~-----~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~-------------------~~~~~~~~h~~~ 531 (581)
...+ .+|...+. .+.++|++. ++++++.||.|++||+.++ +.+..+.+|.+.
T Consensus 247 ~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVW---QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp TTEEEEEEEECCSSCEE---EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred ccceeeeccCCCcCCEE---EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 3333 37776643 444478888 8999999999999998753 467788899999
Q ss_pred EEEEEEcCCCCcEEE-EEECCCcEEEecCCcccc
Q 008005 532 VNCVSWNPANLHMLA-SASDDRTIRIWGLDQINM 564 (581)
Q Consensus 532 v~~l~~~p~~~~~l~-s~s~Dg~I~iW~~~~~~~ 564 (581)
|++++|+|++. +|+ +++.||.|++|++.+.+.
T Consensus 324 v~~~~~s~~~~-~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 324 ISSLDWSPDKR-GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECSSST-TEEEEEETTSEEEEEEECC---
T ss_pred eeEEEEcCCCC-eEEEEecCCCcEEEEECCCccc
Confidence 99999999994 666 899999999999987654
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.7e-39 Score=330.37 Aligned_cols=296 Identities=16% Similarity=0.196 Sum_probs=233.4
Q ss_pred ceeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcE
Q 008005 264 TLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i 341 (581)
......+|...|+|++|+| ++.+||+|+.||+|+|||+.++.. .....+.+|.+.|++|+|+| ++.+|++|+.||+|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3456678999999999999 567999999999999999986543 34456779999999999998 78899999999999
Q ss_pred EEEEcCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-EEEE
Q 008005 342 RRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIIS 418 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~ 418 (581)
++||++++........+ ...+.+++|+|++.+|++|+.||.|++||+++..+..+. .|...|.+++|+|++. .+++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEE
Confidence 99999876554433333 345788999999999999999999999999876655444 4566899999999886 6788
Q ss_pred EEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc----eeE
Q 008005 419 ICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA----RFV 489 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~ 489 (581)
++.|+.|++||+++.. .....|...|++++|+|++++|++++.|+.|++||+.+. .....+..|... ...
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEeccccccccccee
Confidence 9999999999998765 233468889999999999999999999999999999987 444444444321 112
Q ss_pred EEeeecCCCCcEEEEEe------------CCCcEEEEeCCCCceEEEec-cCCCCEEEE-EEcCCCCcEEEEEECCCcEE
Q 008005 490 IRSCFGGFEQAFIASGS------------EDSQVYIWHRYTGELVLALA-GHSGSVNCV-SWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~-~h~~~v~~l-~~~p~~~~~l~s~s~Dg~I~ 555 (581)
+...+ ++++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+| .+|++|+ |++|+
T Consensus 348 ~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~-d~~i~ 424 (435)
T 4e54_B 348 IKAAW-HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM-GYHIL 424 (435)
T ss_dssp CBCEE-CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC-SSEEE
T ss_pred EEEEE-cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc-CCcEE
Confidence 22223 55555555553 34579999999999988765 688889887 699999 6888876 78999
Q ss_pred EecCCccccc
Q 008005 556 IWGLDQINMK 565 (581)
Q Consensus 556 iW~~~~~~~~ 565 (581)
||++++++.+
T Consensus 425 iW~~~~gk~r 434 (435)
T 4e54_B 425 IWSQQEARTR 434 (435)
T ss_dssp ECCCC-----
T ss_pred EEECCcCeee
Confidence 9999988754
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=332.68 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=247.6
Q ss_pred ccCcEEEEEEcCCCC-EEEEE----------eCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 271 HSDEVWFLQFSHDGK-YLASS----------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~~g~-~lasg----------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
+...|.+++|+|+++ +|++| +.|+.|+|||+.++........ ..|...|.+++|+|++.+|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 445788999999997 99999 8899999999986532222232 35889999999999999999999999
Q ss_pred cEEEEEcCC----CcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCe------EEe---eccCccccEE
Q 008005 340 AIRRWDVNS----GECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE------LES---WKGQKTLRIS 405 (581)
Q Consensus 340 ~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~------~~~---~~~~~~~~i~ 405 (581)
.|++||+.+ .+.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+.. ... ....+...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999988 4588889999999999999998 8999999999999999998765 211 1245666899
Q ss_pred EEEEeeC-CCEEEEEEcCCeEEEEECCCCee-e-EEec------CCceEEEEECCCC-CEEEEEeeCC---cEEEEEecC
Q 008005 406 DMAITDD-GKRIISICREAAILLLDREANFE-R-WIEE------EEVITSFSLSKDN-KYLLVNLINQ---EIHLWSIES 472 (581)
Q Consensus 406 ~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~-~~~~------~~~i~~~~~sp~~-~~l~~~~~d~---~i~iwd~~~ 472 (581)
+++|+|+ +..+++++.|+.|++||+++... . ...+ ...+.+++|+|++ .++++++.++ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 78999999999999999998772 2 2222 6789999999997 6899999998 999999998
Q ss_pred CCceeEEEe-ccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 473 DPKLVSRYK-GHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 473 ~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
...+...+. +|...+. .+.++| ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|+++.+|++++.
T Consensus 250 ~~~~~~~~~~~~~~~v~---~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGIL---SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TTSCSBCCCSCCSSCEE---EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred CCCCcEEeecCccCcee---EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence 756777777 7877643 344477 89999999999999999999999999999999999999999998679999999
Q ss_pred CCcEEEecCCcccc
Q 008005 551 DRTIRIWGLDQINM 564 (581)
Q Consensus 551 Dg~I~iW~~~~~~~ 564 (581)
||.|++|++.+...
T Consensus 327 d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 327 DNKIEVQTLQNLTN 340 (416)
T ss_dssp SSEEEEEESCCCCC
T ss_pred CCcEEEEEccCCCC
Confidence 99999999987664
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.2e-38 Score=314.83 Aligned_cols=290 Identities=14% Similarity=0.262 Sum_probs=243.8
Q ss_pred eecccccCcEEEEEEcCC----CCEEEEEeCCCeEEEEEcccCCeeeEEEEec--CCCCCEEEEEeCCC----CCeEEEe
Q 008005 266 QILEAHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLLTC 335 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~----g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~sp~----~~~l~s~ 335 (581)
....+|.+.|++++|+|+ ...+++++.++.|++|++.++.......... .|...|.+++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345589999999999984 4466666677799999998765544444333 37788999999998 6799999
Q ss_pred eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeec---cCccccEEEEEEee
Q 008005 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITD 411 (581)
Q Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~i~~~~ 411 (581)
+.||.|++||+.+++.+..+..|...|.+++|+| ++..|++++.||.|++||++++...... ..+...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 8999999999999999999987776665 56777999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCee--eE----------------------------EecCCceEEEEECCCCCEEEEEee
Q 008005 412 DGKRIISICREAAILLLDREANFE--RW----------------------------IEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~~--~~----------------------------~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+++.+++++.|+.|++||+++... .. ..+...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 999999999999999999987641 11 1178889999998 779999999
Q ss_pred CCcEEEEEecCCCc-------------eeEEEeccccceeEEEeeecCCC--CcEEEEEeCCCcEEEEeCCCCc----eE
Q 008005 462 NQEIHLWSIESDPK-------------LVSRYKGHKRARFVIRSCFGGFE--QAFIASGSEDSQVYIWHRYTGE----LV 522 (581)
Q Consensus 462 d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~sgs~dg~I~iwd~~~~~----~~ 522 (581)
|+.|++||+.+... .+..+..|...+.. +.++|+ +.+|++|+.||.|++||+.+++ ..
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY---MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC---CCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE---EEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 99999999987532 35666677665443 344667 9999999999999999999875 44
Q ss_pred EEeccC--CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 523 LALAGH--SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 523 ~~~~~h--~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+.+| ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus 327 ~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC--
T ss_pred eEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEecC
Confidence 577777 7999999999999 7999999999999999853
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=319.28 Aligned_cols=286 Identities=17% Similarity=0.249 Sum_probs=246.0
Q ss_pred cccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEc----ccCCe---eeEEEEecC----------CCCCEEEEEeCCCCCe
Q 008005 270 AHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEV----KEDGQ---VSLKHRLSG----------HRKPVFTVSWSPNDHQ 331 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~----~~~~~---~~~~~~~~~----------h~~~V~~l~~sp~~~~ 331 (581)
.|.+.|++++|+|+++ +||+|+.||.|++|++ .++.. +.....+.. |.+.|++++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4669999999999999 9999999999999999 76541 001222222 6779999999999999
Q ss_pred EEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcccc--------
Q 008005 332 LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR-------- 403 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~-------- 403 (581)
|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.++........+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 99999999999999 778889999999999999999999999999999999999999887776665555544
Q ss_pred -------EEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008005 404 -------ISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 404 -------i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
+.+++|++++ .+++++.++.|++||+.+.. .....+...|.+++|+|++++|++++.|+.|++||+.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~- 279 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG- 279 (425)
T ss_dssp ----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-
T ss_pred ccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-
Confidence 8999999985 68899999999999999876 445578899999999999999999999999999999987
Q ss_pred ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
.....+..|...+. .+.++|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.||.|
T Consensus 280 ~~~~~~~~~~~~i~---~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 354 (425)
T 1r5m_A 280 NSQNCFYGHSQSIV---SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQV 354 (425)
T ss_dssp SCSEEECCCSSCEE---EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCE
T ss_pred ccceEecCCCccEE---EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-CEEEEEECCCeE
Confidence 67778887877643 34447788 99999999999999999999999999999999999999999 799999999999
Q ss_pred EEecCCccc
Q 008005 555 RIWGLDQIN 563 (581)
Q Consensus 555 ~iW~~~~~~ 563 (581)
++|++.+.+
T Consensus 355 ~i~~~~~~~ 363 (425)
T 1r5m_A 355 NVYDLKKLN 363 (425)
T ss_dssp EEEECHHHH
T ss_pred EEEECCCCc
Confidence 999998876
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=316.49 Aligned_cols=280 Identities=17% Similarity=0.255 Sum_probs=247.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
+|.+.|++++|+|++++|++|+.||.|++|+.. + .....+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG 181 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence 378899999999999999999999999999943 3 455678899999999999999999999999999999999999
Q ss_pred cEEEEEecCCCe---------------EEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC
Q 008005 350 ECLHVYEKTGVG---------------LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 350 ~~~~~~~~~~~~---------------v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
+.+..+..+... +.++.|++++ .+++++.||.|++||+.++........+...|.+++|+|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 999988877766 8999999874 689999999999999988776666666777999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 415 RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
++++++.|+.|++||+++.. ..+..+...+.+++|+|++ ++++++.|+.|++||+.+. ..+..+..|...+ ..
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i---~~ 335 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPI---FA 335 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCE---EE
T ss_pred EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccE---EE
Confidence 99999999999999998876 4445688899999999999 9999999999999999887 7788888877763 34
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCc--------------------eEEEeccCCC--CEEEEEEcCCCCcEEEEEEC
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGE--------------------LVLALAGHSG--SVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~ 550 (581)
+.++|++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++ .+|++++.
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~ 414 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYS 414 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEES
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEec
Confidence 4458999999999999999999999888 8899999976 99999999999 69999999
Q ss_pred CCcEEEecCC
Q 008005 551 DRTIRIWGLD 560 (581)
Q Consensus 551 Dg~I~iW~~~ 560 (581)
||.|++|+++
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999986
No 35
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=302.66 Aligned_cols=268 Identities=16% Similarity=0.219 Sum_probs=238.2
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
.++..+.|..+.+|.-... .......+.+|...|.+++|++++.++++|+.|++|++||+.++ .....+..|
T Consensus 50 ~l~tgs~D~~v~vW~~~~~-----~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---~~~~~~~~~ 121 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDE-----RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---KQIKSIDAG 121 (321)
T ss_dssp EEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECC
T ss_pred EEEEEcCCCCEEEEECCCC-----CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---CEEEEEeCC
Confidence 4566777888888863321 11234578999999999999999999999999999999999876 456677889
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 396 (581)
...+.+++|+|++++|++++.||.|++||+.+++....+..+...+.+++|+|++++|++|+.||.|++||+++++....
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008005 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
...+...|.+++|+|++++|++++.|+.|++||+++.. ..+..|...|.+++|+|++++|++++.|+.|++||+.+.
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~- 280 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR- 280 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Confidence 77777899999999999999999999999999998876 455578889999999999999999999999999999987
Q ss_pred ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
..+..+.+|...+.. +.+++++.+|++++.||.|++||.
T Consensus 281 ~~~~~~~~h~~~v~~---v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 281 TCVHTFFDHQDQVWG---VKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECCCSSCEEE---EEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEEcCCCCcEEE---EEECCCCCEEEEEeCCCeEEEEeC
Confidence 788889898887443 444899999999999999999996
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=321.36 Aligned_cols=296 Identities=13% Similarity=0.134 Sum_probs=239.0
Q ss_pred cccccceeec-ccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEccc---CCeeeEEEEecCCCCCEEEEEeCCCCCeEE
Q 008005 259 RIPSQTLQIL-EAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPNDHQLL 333 (581)
Q Consensus 259 ~~~~~~~~~l-~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 333 (581)
....+.+..+ ++|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|.+++|+|++.+|+
T Consensus 49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEE
Confidence 3445677788 89999999999999 999999999999999999976 3322222333 4999999999999999999
Q ss_pred EeeCCCcEEEEEcC---CCcEEEEEec------------CCCeEEEEE--EecCCCeEEEEeCCCcEEEEeCCCCeEEee
Q 008005 334 TCGQEEAIRRWDVN---SGECLHVYEK------------TGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 334 s~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 396 (581)
+++.||.|++||+. +++....+.. +...+.++. +++++..+++|+.||.|++||++++.....
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 99999999999995 5655544332 345566666 457899999999999999999988776555
Q ss_pred ccC--ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee-eEE--ecCCceEEEEEC----CCCCEEEEEeeCCcEEE
Q 008005 397 KGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANFE-RWI--EEEEVITSFSLS----KDNKYLLVNLINQEIHL 467 (581)
Q Consensus 397 ~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~--~~~~~i~~~~~s----p~~~~l~~~~~d~~i~i 467 (581)
... +...|.+++|+|+++++++++.||.|++||++++.. ... .+...|.+++|+ |++.+|++++.|+.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 544 667999999999999999999999999999998772 222 567789999665 46889999999999999
Q ss_pred EEecCCCceeEEEecccccee-----------------------EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 008005 468 WSIESDPKLVSRYKGHKRARF-----------------------VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA 524 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~-----------------------~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 524 (581)
||++++ ..+..+.+|..... .+.++.++ ++.+|++|+.||.|++||+.+++....
T Consensus 288 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999987 66777765542211 12222334 668999999999999999999987776
Q ss_pred ecc-------------------------------------CCCCEEEEEEcCC--CCcEEEEEECCCcEEEec
Q 008005 525 LAG-------------------------------------HSGSVNCVSWNPA--NLHMLASASDDRTIRIWG 558 (581)
Q Consensus 525 ~~~-------------------------------------h~~~v~~l~~~p~--~~~~l~s~s~Dg~I~iW~ 558 (581)
+.+ |...|++++|+++ + .+|+||+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEEeC
Confidence 665 8899999999998 5 6999999999999995
No 37
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=309.00 Aligned_cols=302 Identities=16% Similarity=0.206 Sum_probs=244.5
Q ss_pred cceeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEE----------ecCCCCCEEEEEeCC-CCC
Q 008005 263 QTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHR----------LSGHRKPVFTVSWSP-NDH 330 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~----------~~~h~~~V~~l~~sp-~~~ 330 (581)
+....+.+|.+.|++++|+| ++++||+|+.||.|++||+.+......... ..+|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 34667788999999999999 999999999999999999986543222111 135999999999999 778
Q ss_pred eEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecC---CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEE
Q 008005 331 QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (581)
Q Consensus 331 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i 407 (581)
+|++++.||.|++||+.+++....+. +...+.++.|.+. +..+++++.||.|++||++++........+...|.++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999999999888876 6678899999984 4489999999999999998877666666677799999
Q ss_pred EEeeCCC-EEEEEEcCCeEEEEECCCCe---eeE---------------EecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 408 AITDDGK-RIISICREAAILLLDREANF---ERW---------------IEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 408 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
+|+|+++ .+++++.||.|++||+++.. ... ..+...|.+++|+|++++|++++.|+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 58899999999999998754 111 3577889999999999999999999999999
Q ss_pred EecCCCceeEEEecccc--ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEE
Q 008005 469 SIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 546 (581)
|+.+.. ....+..+.. .............+..+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++ .+|+
T Consensus 273 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 350 (408)
T 4a11_B 273 NSSNGE-NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELY 350 (408)
T ss_dssp ETTTCC-BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-TEEE
T ss_pred ECCCCc-cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-CEEE
Confidence 998873 3322222111 11111222223445667777889999999999999999999999999999999999 7999
Q ss_pred EEECCCcEEEecCCccccccc
Q 008005 547 SASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
+++.||.|++|++++.+....
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEETTSCEEEEEECC------
T ss_pred EECCCCeEEEEeCCCCCccCC
Confidence 999999999999998876543
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-38 Score=322.45 Aligned_cols=311 Identities=18% Similarity=0.219 Sum_probs=256.2
Q ss_pred CCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe-eeEEEEecCCCCCE
Q 008005 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPV 320 (581)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V 320 (581)
..+..+.+|+....... +++..+ .|...|++++|+|++++|++|+.||.|++|++..... ......+.+|...|
T Consensus 42 ~~d~~v~iw~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v 116 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116 (416)
T ss_dssp CCCCCCEEEESSSGGGC----SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC
T ss_pred CCCCeEEEEEccCCCCC----cEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccce
Confidence 45667777764432211 223333 5899999999999999999999999999999986211 13667788999999
Q ss_pred EEEEeCCC-CCeEEEeeCCCcEEEEEcCCCc------EEEE---EecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCC
Q 008005 321 FTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE------CLHV---YEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 321 ~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~ 389 (581)
.+++|+|+ +.+|++++.||.|++||+.+++ .... ...|...|.+++|+|+ +..+++++.||.|++||++
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 99999998 8999999999999999999886 3322 3578889999999998 7889999999999999999
Q ss_pred CCeEEeeccCc------cccEEEEEEeeCC-CEEEEEEcCC---eEEEEECCCCe---eeEE-ecCCceEEEEECC-CCC
Q 008005 390 GRELESWKGQK------TLRISDMAITDDG-KRIISICREA---AILLLDREANF---ERWI-EEEEVITSFSLSK-DNK 454 (581)
Q Consensus 390 ~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~~~~~dg---~i~i~d~~~~~---~~~~-~~~~~i~~~~~sp-~~~ 454 (581)
++........+ ...+.+++|+|++ ..+++++.++ .|++||+++.. ..+. .|...|.+++|+| +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 276 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence 87766555544 5689999999997 6899999998 99999999853 3444 6889999999999 999
Q ss_pred EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC-cEEEEEeCCCcEEEEeCCCCceEEEec-------
Q 008005 455 YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQVYIWHRYTGELVLALA------- 526 (581)
Q Consensus 455 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~------- 526 (581)
+|++++.|+.|++||+.+. +.+..+.+|...+.. +.++|++ .+|++++.||.|++||+.++.......
T Consensus 277 ~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~---~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 352 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFK---TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ 352 (416)
T ss_dssp CEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCC---EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred eEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEE---EEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence 9999999999999999987 788888888877444 3448888 899999999999999998765332211
Q ss_pred ----------------------------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 527 ----------------------------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 527 ----------------------------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.|..++++++|+|+| ++|++++.||+|+||++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCBCCCCC
T ss_pred CCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEEEeccC
Confidence 166788899999999 79999999999999999864
No 39
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-37 Score=315.56 Aligned_cols=309 Identities=12% Similarity=0.144 Sum_probs=250.4
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
++....+..+.+|+... .+....+..| ..+....|+|++++||+|+.||.|++||+.++ .....+.+|.
T Consensus 71 l~~~~~d~~v~i~d~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~ 139 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTII-------RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQAHV 139 (420)
T ss_dssp EEEEEETTEEEEEECCS-------EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETTSSS
T ss_pred EEEEEcCCcEEEEEecc-------cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeeccccc
Confidence 34445566677775332 2233445555 55666688999999999999999999999865 5566778999
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 397 (581)
..|++++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++..|++++.||.|++||++++......
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 219 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765544
Q ss_pred cC---ccc---------------------cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee--E-EecCCceEEEEEC
Q 008005 398 GQ---KTL---------------------RISDMAITDDGKRIISICREAAILLLDREANFER--W-IEEEEVITSFSLS 450 (581)
Q Consensus 398 ~~---~~~---------------------~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~-~~~~~~i~~~~~s 450 (581)
.. +.. .+.+++|+|+++++++++.||.|++||+++.... . ..+...+.+++|+
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEe
Confidence 32 222 3444555788999999999999999999987722 2 2367889999999
Q ss_pred CCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC---------c
Q 008005 451 KDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---------E 520 (581)
Q Consensus 451 p~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---------~ 520 (581)
|++. +|++++.||.|++||+++...++..+..|... .+..++ .+++.+|++++.||.|++|++... .
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT--PINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS--CEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC--CceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 9999 99999999999999999876667777764332 233344 347889999999999999998763 2
Q ss_pred eEEEeccCCCCEEEEEEcCCCCc---EEEEEECCCcEEEecCCc
Q 008005 521 LVLALAGHSGSVNCVSWNPANLH---MLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 521 ~~~~~~~h~~~v~~l~~~p~~~~---~l~s~s~Dg~I~iW~~~~ 561 (581)
....+.+|.+.|.+++|+|++ . .+++++.+|.+.+|++++
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~-~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDD-ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCS-SSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEccCCcceEEEEEccCC-CCcceEEEEcCCceEEEEeccC
Confidence 233466788999999999999 5 677788899999999875
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-36 Score=300.04 Aligned_cols=267 Identities=16% Similarity=0.288 Sum_probs=232.9
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
.....+.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|+++++++|+.|+.|++||
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 388 LDGR----ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 388 ~~~~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+.+. ........|...|.++.|++++. +++++.|+.|++||+.++. ..+..|...|.+++|+|+++++++++.
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9754 23444456677899999998875 8899999999999999887 445568899999999999999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--CCCCEEEEEEcC
Q 008005 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--HSGSVNCVSWNP 539 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~~p 539 (581)
|+.|++||++++ .....+.+|...+. .+.++|++++|++|+.||.|++||+.+++.+..+.. +...|++++|+|
T Consensus 205 d~~v~~wd~~~~-~~~~~~~~h~~~v~---~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 205 DASAKLWDVREG-MCRQTFTGHESDIN---AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TSCEEEEETTTC-SEEEEECCCSSCEE---EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred CCcEEEEECCCC-eeEEEEcCCcCCEE---EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 999999999987 77888888888744 444589999999999999999999999988777653 335799999999
Q ss_pred CCCcEEEEEECCCcEEEecCCcccccc-----ccCCCceEEecCCC
Q 008005 540 ANLHMLASASDDRTIRIWGLDQINMKH-----RDQSNGIVHHCNGR 580 (581)
Q Consensus 540 ~~~~~l~s~s~Dg~I~iW~~~~~~~~~-----~~~~~~~~~~~~G~ 580 (581)
++ .+|++|+.||.|++||+.+++... ......+.+++||+
T Consensus 281 ~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 281 SG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp TS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC
Confidence 99 799999999999999998876543 33356778888886
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-38 Score=318.50 Aligned_cols=288 Identities=13% Similarity=0.152 Sum_probs=227.9
Q ss_pred ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ .......+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 44557789999999999999999999999999999854 33456778899999999999999999999999999999999
Q ss_pred CCCc---EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe----EEeeccCccccEEEEEEeeCCCEEEEE
Q 008005 347 NSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 347 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~ 419 (581)
.+++ ....+..|...|.+++|+|+++.|++++.|+.|++||++++. ...+...|...|.+++|+|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 9887 677788899999999999999999999999999999998765 344444377799999999999999999
Q ss_pred EcCCeEEEEECCC------------------Ce-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCce---e
Q 008005 420 CREAAILLLDREA------------------NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL---V 477 (581)
Q Consensus 420 ~~dg~i~i~d~~~------------------~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~ 477 (581)
+.|+.|++||+.. +. .....|...|.+++|+|++++|++++.|+.|++||+.+...+ +
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 9999999999852 11 111278888999999999999999999999999999987331 6
Q ss_pred EEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc--e-------------------------E--------
Q 008005 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE--L-------------------------V-------- 522 (581)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~--~-------------------------~-------- 522 (581)
..+.+|...+. .+.++|++++|++|+.++.+ +|+..... . .
T Consensus 245 ~~~~~~~~~v~---~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 245 ITVKLSQLPLR---SLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp CCEECSSSCEE---EEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred EeecCCCCceE---EEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 67778877643 44448899999999877666 66654211 0 0
Q ss_pred -EEe----------------ccCCCCEEEEEEcCCCCc---EEEEEECCCcEEEecC
Q 008005 523 -LAL----------------AGHSGSVNCVSWNPANLH---MLASASDDRTIRIWGL 559 (581)
Q Consensus 523 -~~~----------------~~h~~~v~~l~~~p~~~~---~l~s~s~Dg~I~iW~~ 559 (581)
..+ ..|.+.|+++++.+.... .|+|||.||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 001 139999999997765434 6999999999999986
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.7e-36 Score=336.21 Aligned_cols=295 Identities=16% Similarity=0.212 Sum_probs=261.9
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
+..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ .....+.+|..+|++++|+|++++|++++.||.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456788999999999999999999999999999999999876 56677889999999999999999999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEeeccCccccEEEEEEee-CCCEEEEEE
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITD-DGKRIISIC 420 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~ 420 (581)
+||+.+++.+..+..|...|.+++|+|+++.|++++.||.|++||++++ ........+...|.+++|+| ++..+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999875 66666666777999999999 889999999
Q ss_pred cCCeEEEEECCCCe--eeEEe-cCCceEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeec
Q 008005 421 REAAILLLDREANF--ERWIE-EEEVITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~-~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
.||.|++||+.+.. ..... +...+.+++|+| ++.++++++.++.|++||+.++ ..+..+.+|... +..+.+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~---v~~~~~ 236 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSN---VSFAVF 236 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSC---EEEEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCC---EEEEEE
Confidence 99999999998766 33333 348899999999 9999999999999999999887 778888888776 444445
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.|+.+.+|++.....
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 899999999999999999999999999999999999999999999855445556677899999876543
No 43
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.4e-36 Score=305.80 Aligned_cols=280 Identities=17% Similarity=0.261 Sum_probs=235.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.++.|+||++ ++||+|. |++|+|||..++... ....+.+|...|++|+|+|+|++|++|+.||+|++||+.+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 4787775 999999999876432 334466788899999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+.+|...+.++.|+ +..+++|+.|+.+++||.... ........|...+..+.++|+++.+++++.|+.+++|+...
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999988875 679999999999999998753 33344456667899999999999999999999999999987
Q ss_pred Ce------eeEEecCCceEEEEECCCCC-EEEEE--eeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE
Q 008005 433 NF------ERWIEEEEVITSFSLSKDNK-YLLVN--LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 433 ~~------~~~~~~~~~i~~~~~sp~~~-~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
+. .....+...|.+++|+|++. .++++ +.|+.|++||+.++ .....+..+... . .+.+++++..++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~~v---~-~~~~~~~~~~lv 336 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQV---C-SILWSPHYKELI 336 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSSCE---E-EEEEETTTTEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccccce---e-eeeecCCCCeEE
Confidence 64 34557788999999999655 55543 46899999999987 667777665542 3 333477777777
Q ss_pred EEe--CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 504 SGS--EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 504 sgs--~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+++ .||.|+|||+.+++++..+.+|.+.|++++|+|+| .+|+|||.|++|+|||+.+...
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSSC
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCc
Confidence 654 79999999999999999999999999999999999 7999999999999999976543
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-36 Score=301.85 Aligned_cols=299 Identities=15% Similarity=0.223 Sum_probs=249.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
|.+.|.+++|+|||++++++..++.+.+|..... ... ....+|...|++++|+|++++|++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQ-INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEE-EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc--ccc-ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999888877777755422 223 33457999999999999999999999 9999999998765
Q ss_pred E---EEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEeeCCCEEEEEEcCC
Q 008005 351 C---LHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRIISICREA 423 (581)
Q Consensus 351 ~---~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 423 (581)
. ...+. .|...|.+++|+|+++.+++++.||.|++||+.++. .......+...+.+++|+|+++.+++++.|+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 3 23333 688899999999999999999999999999998765 4444555666899999999999999999999
Q ss_pred eEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
.|++||++++. ..+..+...+.+++|+|++++|++++.|+.|++||+++. +....+. +... +..+.++|++.+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~~---v~~~~~s~~~~~ 238 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTSQ---IFSLGYCPTGEW 238 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSC---EEEEEECTTSSE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCCc---eEEEEECCCCCE
Confidence 99999999877 344457889999999999999999999999999999987 5555554 3333 344455899999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc----ccCCCceEEec
Q 008005 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH----RDQSNGIVHHC 577 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~----~~~~~~~~~~~ 577 (581)
+++++.||.|++||+.+++.. .+..|...|.+++|+|++ .+|++++.||.|++|++.+++... ......+.+++
T Consensus 239 l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred EEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC
Confidence 999999999999999888754 677899999999999999 799999999999999999887653 23356677888
Q ss_pred CCC
Q 008005 578 NGR 580 (581)
Q Consensus 578 ~G~ 580 (581)
+|+
T Consensus 317 ~~~ 319 (337)
T 1gxr_A 317 DDK 319 (337)
T ss_dssp TSC
T ss_pred CCC
Confidence 875
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-36 Score=307.68 Aligned_cols=287 Identities=15% Similarity=0.235 Sum_probs=235.0
Q ss_pred cccccCcEE--EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 268 LEAHSDEVW--FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 268 l~~h~~~V~--~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..+|.+.+. +++|++ ..+++++.|+.|++|++.++... ..+. .|...|.+++|+|++++|++|+.||.|++|
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS---ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE---EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 346776544 455554 56888889999999999876432 3333 388999999999999999999999999999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 423 (581)
|+.+++.+..+..|...|.+++|+ +..+++|+.||.|++||++ ..........+...|.+++|+|+++.+++++.|+
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999999994 6799999999999999998 4555555556777999999999999999999999
Q ss_pred eEEEEECCCCe--eeEEecCCceEEEEECCCCCE-EEEEe--eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 424 AILLLDREANF--ERWIEEEEVITSFSLSKDNKY-LLVNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
.|++||+++.. .....+...|.+++|+|++.. +++++ .|+.|++||+.++ ..+..+..+ .. +..+.++++
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~-~~---v~~~~~s~~ 314 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAG-SQ---VTSLIWSPH 314 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECS-SC---EEEEEECSS
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCC-Cc---EEEEEECCC
Confidence 99999999876 344568899999999997754 55544 6999999999987 666666533 33 445556999
Q ss_pred CcEEEE--EeCCCcEEEEeCCCCceEE--EeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 499 QAFIAS--GSEDSQVYIWHRYTGELVL--ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 499 ~~~l~s--gs~dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
+.++++ |+.||.|++||+.+++... .+.+|.+.|.+++|+|++ .+|++++.||.|++|++.+++....
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC------
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccc
Confidence 999999 5589999999999865544 467899999999999999 7999999999999999998876543
No 46
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.5e-36 Score=299.42 Aligned_cols=287 Identities=13% Similarity=0.103 Sum_probs=245.7
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~v 343 (581)
+....+|.+.|++++|+|++++|++|+.||.|+||++.++........+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 445568999999999999999999999999999999987653334455668999999999999999 9999999999999
Q ss_pred EEc-CCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC---------CeEEeeccCccccEEEEEEee
Q 008005 344 WDV-NSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---------RELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 344 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~i~~~~ 411 (581)
||+ .+++. ..+.. |...|.+++|+| +..+++++.|+.|++||+++ ........ +...+.+++|++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 999 87765 67778 999999999999 99999999999999999975 44333333 556899999998
Q ss_pred CCCEEEEEEcCCeEEEEECCC-Ce----eeEEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCC-----CceeEEE
Q 008005 412 DGKRIISICREAAILLLDREA-NF----ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESD-----PKLVSRY 480 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~-~~----~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~ 480 (581)
++ +++++.++.|++||+++ .. .....+...+.+++|+| +++++++++.+|.|++|+++.. ......+
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 87 99999999999999998 43 24446778899999999 9999999999999999999876 3677778
Q ss_pred eccccc------eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-CCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 481 KGHKRA------RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 481 ~~~~~~------~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
..|... ...+..+.++|++++|++++.||.|++||+.+++.+..+.+| .+.|++++ |++ .+|++++.||+
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-~~l~s~s~Dg~ 315 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD-NILCLATSDDT 315 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS-SEEEEEEECTH
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC-CeEEEEecCCc
Confidence 877541 112445555899999999999999999999999999999998 99999999 888 79999999998
Q ss_pred -EEEecC
Q 008005 554 -IRIWGL 559 (581)
Q Consensus 554 -I~iW~~ 559 (581)
.+.|..
T Consensus 316 ~~~~~~~ 322 (342)
T 1yfq_A 316 FKTNAAI 322 (342)
T ss_dssp HHHCSSS
T ss_pred ccccccc
Confidence 666554
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-37 Score=316.58 Aligned_cols=299 Identities=14% Similarity=0.141 Sum_probs=242.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
..+++++|+|++++|++|+.||.|++||+.+. .....+..| ..+....|+|++++|++++.||.|++||+.+++..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR---DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSE---ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccc---ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee
Confidence 34557999999999999999999999999754 222334445 44555678999999999999999999999999998
Q ss_pred EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
..+..|...|.+++|+|++++|++|+.|+.|++||++++........|...|.+++|+|+++.|++++.|+.|++||+++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 88889999999999999999999999999999999987766665666777999999999999999999999999999998
Q ss_pred Cee-eEEe----cC---------------------CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc
Q 008005 433 NFE-RWIE----EE---------------------EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (581)
Q Consensus 433 ~~~-~~~~----~~---------------------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 486 (581)
+.. .... +. ..+.+++|+|++++|++++.||.|++||+++..........|...
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence 772 2221 22 445556668999999999999999999999884444444456555
Q ss_pred eeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCCce-EEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 487 RFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTGEL-VLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 487 ~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~~~-~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+..+.++|++. +|++|+.||.|++||+.+++. +..+.+ |...|+++.|. ++ .+|++++.||+|++|++....
T Consensus 293 ---v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 293 ---CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp ---EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTT
T ss_pred ---ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCC
Confidence 34444588888 999999999999999998754 677776 67788888665 56 699999999999999998742
Q ss_pred cc--------------cccCCCceEEecCCC
Q 008005 564 MK--------------HRDQSNGIVHHCNGR 580 (581)
Q Consensus 564 ~~--------------~~~~~~~~~~~~~G~ 580 (581)
.. +......+.|+|+|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred CCccceeccCccEEccCCcceEEEEEccCCC
Confidence 21 123366788888876
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.4e-36 Score=300.61 Aligned_cols=296 Identities=16% Similarity=0.206 Sum_probs=227.9
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC-eeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAI 341 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i 341 (581)
...+.+|.+.|++++|+|++++||+|+.||.|++||+.++. .......+.+|...|++++|+| ++.+|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45678999999999999999999999999999999998543 3356677889999999999999 69999999999999
Q ss_pred EEEEcCCC---------cEEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCeEEee-------------c
Q 008005 342 RRWDVNSG---------ECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRELESW-------------K 397 (581)
Q Consensus 342 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~-------------~ 397 (581)
++||+.++ +.+..+..|...|.+++|+|+ +.++++++.||.|++||+++...... .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888899999999999999 99999999999999999975442111 1
Q ss_pred cCccccEEEEEEeeC---CCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCCC----CEEEEEeeCCcEE
Q 008005 398 GQKTLRISDMAITDD---GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIH 466 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~ 466 (581)
..+...+.+++|+|+ +..+++++.++.+.+|+..... .....|...|.+++|+|++ ++|++++.|+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 145568999999997 9999999999999888887765 2333578899999999998 8999999999999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE----EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCC
Q 008005 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS----GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s----gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~ 542 (581)
+||++....... ...+... ......++....+.. +.....+.+|+....+.+..+.+|.+.|++++|+|++
T Consensus 244 iwd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~- 318 (351)
T 3f3f_A 244 IFKITEKLSPLA-SEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG- 318 (351)
T ss_dssp EEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-
T ss_pred EEeCCCCcCccc-cCCcccc---eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-
Confidence 999987533222 1111111 111111223333333 3345566777777788899999999999999999999
Q ss_pred cEEEEEECCCcEEEecCCccccc
Q 008005 543 HMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+|++++.||.|++|++.+++..
T Consensus 319 ~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp CCEEEEETTSCEEEEEECTTSCE
T ss_pred CEEEEecCCCcEEEEecCcCcch
Confidence 79999999999999999987644
No 49
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=295.59 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=205.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeee-EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS-LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
..|...|++++|+|++ .|++|+.||+|+|||+.++.... ......+|.+.|++++|+|++++|++|+.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3577889999999985 68899999999999998765433 234566899999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeEEeec--cCccccEEEEEEeeC-CCEEEEEEcCC
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDD-GKRIISICREA 423 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~i~~~~~-~~~l~~~~~dg 423 (581)
+++++..+.+|...|.+++|++++. .|++++.|++|++||+++++..... ..+...+.+++|+|+ ++++++++.|+
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 9999999999999999999999875 6789999999999999876654433 234456899999985 56889999999
Q ss_pred eEEEEECCCCe--eeEEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 424 AILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
.|++||++++. ..+..|...|++++|+|++ ++|++++.|+.|++||+.++ + +..+.+|...+. .+.++|++.
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~~~~~H~~~V~---~v~~sp~~~ 312 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-E-LFRSQAHRDFVR---DATWSPLNH 312 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC-E-EEEECCCSSCEE---EEEECSSST
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-c-EEEEcCCCCCEE---EEEEeCCCC
Confidence 99999999877 5667789999999999998 57899999999999999886 4 445778887744 444488775
Q ss_pred -EEEEEeCCCcEEEEeCCCCce
Q 008005 501 -FIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 501 -~l~sgs~dg~I~iwd~~~~~~ 521 (581)
+|++++.||+|++|++.+...
T Consensus 313 ~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEcCCCeEEEEECCCCCC
Confidence 678999999999999976543
No 50
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-36 Score=304.20 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=219.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCC-------eEEEEEcccCCee-------eEEEEecCCCCCEEEEEeCCCCCeEEEe---
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQ-------SAIIWEVKEDGQV-------SLKHRLSGHRKPVFTVSWSPNDHQLLTC--- 335 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg-------~i~iwd~~~~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~l~s~--- 335 (581)
-+|+|++|+|||++||+|+.+. .|++|++...... .....+.+|...|.+++++ +..++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4899999999999999998643 5999998754321 1223567899999988875 4455554
Q ss_pred --------eCCCcEEEEEcCCCcEEEE-E--------ecCCCeEEEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEee
Q 008005 336 --------GQEEAIRRWDVNSGECLHV-Y--------EKTGVGLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESW 396 (581)
Q Consensus 336 --------~~dg~i~vwd~~~~~~~~~-~--------~~~~~~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~ 396 (581)
+.|+.+++|++.+...... . ..+...+.+++|+|||+++++++ .|++|++||+.+......
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4578899999876532211 1 12345688999999999987554 689999999998877665
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e---eEEecCCceEEEEECCCCCEEEEEeeCC----cEEEE
Q 008005 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E---RWIEEEEVITSFSLSKDNKYLLVNLINQ----EIHLW 468 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iw 468 (581)
.. +...|.+++|+|+|+++++++.++ +.+|+..++. . ....+...+.+++|+|+++++++++.++ .+++|
T Consensus 173 ~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 173 IE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred eC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 55 445899999999999999988655 5555555544 2 2235677899999999999999999887 68889
Q ss_pred EecCCCce---eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcE
Q 008005 469 SIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHM 544 (581)
Q Consensus 469 d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~ 544 (581)
++...... ...+.+|... +.++.++|+|++||+|+.|+.|+|||+.+++++..+ .+|...|++++|+||+ .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~---V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKG---ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-TY 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSC---EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-CE
T ss_pred ccccceecceeeeeecCCCCC---eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-CE
Confidence 98765322 2345666665 444555999999999999999999999999999875 7899999999999999 79
Q ss_pred EEEEECCCcEEEecCCcc
Q 008005 545 LASASDDRTIRIWGLDQI 562 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~ 562 (581)
|+|||.|++|+||++...
T Consensus 327 laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSEEEEEECCTT
T ss_pred EEEEeCCCeEEEEEcCCC
Confidence 999999999999999643
No 51
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=288.03 Aligned_cols=293 Identities=18% Similarity=0.272 Sum_probs=233.1
Q ss_pred ccccceeeccc--ccC--cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe
Q 008005 260 IPSQTLQILEA--HSD--EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (581)
Q Consensus 260 ~~~~~~~~l~~--h~~--~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 335 (581)
+|..+.++|.+ ..+ ...+|+||+++ +||+| .|++|+|||+.++... ....+.+|...|++++|+|++++|++|
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-~~~~~~~~~~~V~~v~~~~~~~~l~sg 85 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVG 85 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-EEEEecCCCCeEEEEEECCCCCEEEEE
Confidence 44555555542 222 35789999986 77776 4999999999876433 233456788899999999999999999
Q ss_pred eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEeeccCccccEEEEEEeeCCC
Q 008005 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
+.||+|++||+++++++..+..|...+.++.+ ++..+++++.++.+++|+.... ........+...+..+.+.++++
T Consensus 86 s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 4ggc_A 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163 (318)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred ECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence 99999999999999999999999888876554 5679999999999999998754 33444455667899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEECCCCCEEE---EEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 415 RIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLL---VNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~~~l~---~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
.+++++.|+.|++||++++. .....+...+.++.++|++..++ +++.++.|++||.... ....... +..
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~-~~~ 241 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHS 241 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEE-CSS
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccccc-cee
Confidence 99999999999999998764 34445677899999999765433 4456789999999886 3333333 333
Q ss_pred ceeEEEeeecCCCCcEEEEE--eCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 486 ARFVIRSCFGGFEQAFIASG--SEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
. +..+.+.+.+..++++ +.|+.|++||+.+++++..+.+|.+.|++++|+|++ .+|+|||.||+|+|||+.+..
T Consensus 242 ~---v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 242 Q---VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp C---EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred e---eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 3 2233336677766654 479999999999999999999999999999999999 799999999999999997653
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-35 Score=305.62 Aligned_cols=287 Identities=18% Similarity=0.333 Sum_probs=246.4
Q ss_pred ceeecccccCcE-EEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEV-WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V-~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.++ .....+.+|.+.|.+++|+|++ +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 356788999885 66666 5679999999999999999876 5677889999999999999988 999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCCeE-----------------------Eeec
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLDGREL-----------------------ESWK 397 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~ 397 (581)
+||+.+++++..+..|...|.+++|+ +++..+++|+.||.|++||+.+... ....
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 99999999999999999999999998 4778999999999999999976442 2233
Q ss_pred cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
..+...+.++ +++++.+++++.|+.|++||+.+.. ..+..|...|.+++|+|+++++++++.|+.|++||+.++ +
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 4444566655 6889999999999999999999887 445568899999999999999999999999999999987 8
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+..+.+|...+..+.. + +.++++++.||.|++||+.++....... |...+..++|+|++ .++++++ ||.|+
T Consensus 344 ~~~~~~~h~~~v~~~~~---~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRL---S--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD-NILVSGS-ENQFN 415 (464)
T ss_dssp EEEEECCCSSCEEEEEE---C--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS-SEEEEEE-TTEEE
T ss_pred EEEEEeCCCCcEEEEEE---c--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC-CEEEEec-CCeEE
Confidence 88899999887554432 3 6899999999999999999988766654 67788889999999 6888888 89999
Q ss_pred EecCCccccccc
Q 008005 556 IWGLDQINMKHR 567 (581)
Q Consensus 556 iW~~~~~~~~~~ 567 (581)
+||+.++++...
T Consensus 416 iwd~~~g~~~~~ 427 (464)
T 3v7d_B 416 IYNLRSGKLVHA 427 (464)
T ss_dssp EEETTTCCEEES
T ss_pred EEECCCCcEEeh
Confidence 999999987754
No 53
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-35 Score=290.44 Aligned_cols=269 Identities=16% Similarity=0.306 Sum_probs=231.6
Q ss_pred CeeeEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCC-----CcEEEEEecCCCeEEEEEEecCCCeEEEEe
Q 008005 305 GQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS-----GECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 305 ~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
..+.+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++.+|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 3456677899999999999999965 8999999999999999864 345778899999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCC-----
Q 008005 379 TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKD----- 452 (581)
Q Consensus 379 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~----- 452 (581)
.|++|++||+.+++.......|...|.+++|+|++..+++++.|++|++||++... .....|...+.++.++|.
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-----
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 99999999999988877777778899999999999999999999999999998766 556678899999999985
Q ss_pred -CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC
Q 008005 453 -NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS 531 (581)
Q Consensus 453 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 531 (581)
+..+++++.|+.|++||+.+. .....+.+|...+. .+.++|++++|++|+.||.|++||+.+++.+..+..+ ..
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~---~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 239 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQF-QIEADFIGHNSNIN---TLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTT-EEEEEECCCCSCEE---EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SC
T ss_pred CccEEEEEeCCCEEEEEECCcc-hhheeecCCCCcEE---EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-Cc
Confidence 458999999999999999887 77788888888744 4445899999999999999999999999999888764 68
Q ss_pred EEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-------------cCCCceEEecCCC
Q 008005 532 VNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-------------DQSNGIVHHCNGR 580 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-------------~~~~~~~~~~~G~ 580 (581)
|.+++|+|++ .++++++.+ .+++|+++....... .....+.|+|||+
T Consensus 240 v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 240 VFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EEEEEECSSS-SEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999 688877654 599999987654321 1234678999986
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-35 Score=294.90 Aligned_cols=268 Identities=15% Similarity=0.247 Sum_probs=232.0
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 388 (581)
....+.+|.+.|++++|+|++.+|++|+.||+|++||..+++....+..|...|.+++|+|++..+++|+.|+.+++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECC--CCCEEEE
Q 008005 389 DGR------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSK--DNKYLLV 458 (581)
Q Consensus 389 ~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp--~~~~l~~ 458 (581)
... ........|...|.+++|+|++..+++++.|++|++||++++. ..+..|...|.+++++| ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 532 1122233466789999999999999999999999999999887 45567889999999988 5789999
Q ss_pred EeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC--CCCEEEEE
Q 008005 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH--SGSVNCVS 536 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~ 536 (581)
++.|+.|++||++++ ..+..+.+|...+. .+.++|++.+|++|+.|+.|++||+.+++.+..+..+ ...+.+++
T Consensus 216 gs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~---~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSG-QCVQAFETHESDVN---SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD 291 (354)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCCSSCEE---EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EeCCCeEEEEECCCC-cEEEEecCCCCCeE---EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence 999999999999987 77888888888744 4445899999999999999999999998887776544 35789999
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCcccccc-----ccCCCceEEecCCCC
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQINMKH-----RDQSNGIVHHCNGRI 581 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~-----~~~~~~~~~~~~G~~ 581 (581)
|+|++ .+|++++.|++|++||+.+++... ......+.|+|||+.
T Consensus 292 ~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 292 FSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred EeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence 99999 799999999999999998876542 344667889999863
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-35 Score=305.50 Aligned_cols=295 Identities=20% Similarity=0.395 Sum_probs=253.8
Q ss_pred ceeecccccCcE-EEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEV-WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V-~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
....+.+|.+.| +| ++++|++|++|+.||+|++||+.++ .....+.+|...|.+++|+ +.++++|+.||+|+
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 346788999875 55 4557899999999999999999876 4567889999999999997 56999999999999
Q ss_pred EEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
+||+.+++.+..+..|...|.++.|+ ++.+++|+.||.|++||+.++........+...+.++++ +++.+++++.|
T Consensus 183 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 258 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD 258 (445)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT
T ss_pred EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC
Confidence 99999999999999999999999995 568999999999999999988777666677779999998 78899999999
Q ss_pred CeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 423 g~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
+.|++||.+++. .....+...+.++.| ++.++++++.|+.|++||++++ +.+..+.+|......+ .+++.
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~-----~~~~~ 330 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGM-----ELKDN 330 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEE-----EEETT
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEE-----EEeCC
Confidence 999999998877 344567889999999 8899999999999999999987 7788888887764433 23578
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEecc---CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccccc---------
Q 008005 501 FIASGSEDSQVYIWHRYTGELVLALAG---HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD--------- 568 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~--------- 568 (581)
++++|+.||.|++||+.+++.+..+.+ |...|++++|++ .+|++++.||.|++||+.+++.....
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 407 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCC
Confidence 999999999999999999999999886 889999999964 58999999999999999988765433
Q ss_pred -CCCceEEecCCC
Q 008005 569 -QSNGIVHHCNGR 580 (581)
Q Consensus 569 -~~~~~~~~~~G~ 580 (581)
....+.++|+|.
T Consensus 408 ~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 408 GVVWRIRASNTKL 420 (445)
T ss_dssp CEEEEEEECSSEE
T ss_pred ceEEEEEecCCEE
Confidence 245566677654
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-35 Score=343.54 Aligned_cols=290 Identities=22% Similarity=0.361 Sum_probs=257.3
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++++.||+|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 34567899999999999999999999999999999999876 456778899999999999999999999999999999
Q ss_pred EEcCCCcEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 344 WDVNSGECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
||+.+++.+..+..|...|.+++|+| ++..+++|+.|+.|++||++++........|...|.+++|+|+++.+++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999999999999999999999 5568999999999999999988877777778889999999999999999999
Q ss_pred CCeEEEEECCCCee-eEEe--------------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc
Q 008005 422 EAAILLLDREANFE-RWIE--------------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (581)
Q Consensus 422 dg~i~i~d~~~~~~-~~~~--------------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 486 (581)
||.|++||+.++.. .... ....+.+++|+|+++.+++++ ++.+.+||+.+.........+|...
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCc
Confidence 99999999988762 1111 123688999999999999887 7999999999884444444467666
Q ss_pred eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 487 RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 487 ~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+. .+.++|++.++++++.||.|++||+.++..+..+.+|.+.|++++|+|++ ..+++++.||+|++|++.+
T Consensus 843 v~---~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 843 IQ---YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CC---EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHH
T ss_pred eE---EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccc
Confidence 43 44458999999999999999999999999999999999999999999999 7999999999999999764
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-36 Score=302.39 Aligned_cols=293 Identities=15% Similarity=0.193 Sum_probs=209.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC------CCcEEEEEcCCCc
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ------EEAIRRWDVNSGE 350 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~------dg~i~vwd~~~~~ 350 (581)
.+.+.+++.++.+ +.+.....|++... ....|...|++++|+|||++|++++. |+.|++|+..++.
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEEec-CCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 4555566655444 45677899987532 23579999999999999999999997 7789999987765
Q ss_pred EE----EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe----eccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 351 CL----HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----WKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 351 ~~----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
.. .....|...|.+++|+|++ .+++++.||+|++||+.+++... ....|...|.+++|+|++++|++++.|
T Consensus 82 ~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 82 PNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp -CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 32 3345678889999999987 56678899999999997655332 223566789999999999999999999
Q ss_pred CeEEEEECCCCe--eeEEecCCceEEEEECCCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC-
Q 008005 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE- 498 (581)
Q Consensus 423 g~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 498 (581)
+.|++||.+++. ..+..|...|.+++|+|++. ++++++.|+.|++||++++ +....+..+..........+ +|+
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~-sp~~ 238 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTW-HPEK 238 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEE-CTTS
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhh-hhcc
Confidence 999999999887 44556889999999999875 7889999999999999887 44444443333222333334 665
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc----cCCCceE
Q 008005 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR----DQSNGIV 574 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~ 574 (581)
+.+|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++..+|++++.||+|+|||++++++... .....+.
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~va 318 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVA 318 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEE
T ss_pred cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEE
Confidence 678999999999999999999999999999999999999999867899999999999999998876543 3456788
Q ss_pred Eec-CCC
Q 008005 575 HHC-NGR 580 (581)
Q Consensus 575 ~~~-~G~ 580 (581)
|+| ||+
T Consensus 319 fsP~d~~ 325 (357)
T 4g56_B 319 WSPLDHS 325 (357)
T ss_dssp ECSSSTT
T ss_pred EeCCCCC
Confidence 887 664
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-35 Score=289.62 Aligned_cols=269 Identities=16% Similarity=0.310 Sum_probs=230.8
Q ss_pred eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
......+.+|...|++++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCc
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
|++++........+...|.+++|+|+++++++++.|+.|++||++++. ..+..+...|.+++|+|++++|++++.|+.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 999887776666777799999999999999999999999999999876 444567889999999999999999999999
Q ss_pred EEEEEecCCCceeEEEe-ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEE--EEEc-CC
Q 008005 465 IHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNC--VSWN-PA 540 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~--l~~~-p~ 540 (581)
|++||+++. ..+..+. .+... +..+.++|++++|++++.||.|++||+.+++.+..+.+|...+.+ ..++ ++
T Consensus 173 i~~wd~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 173 CRIWDTASG-QCLKTLIDDDNPP---VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp EEEEETTTC-CEEEEECCSSCCC---EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred EEEEECCCC-ceeeEEeccCCCc---eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 999999987 4454443 33333 444555999999999999999999999999999999988765433 3444 45
Q ss_pred CCcEEEEEECCCcEEEecCCccccccccC-----CCceEEecCCC
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHCNGR 580 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~~G~ 580 (581)
+ .+|++++.||.|++||+.++++..... ...+.++|+|+
T Consensus 249 ~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~ 292 (312)
T 4ery_A 249 G-KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292 (312)
T ss_dssp S-CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS
T ss_pred C-cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC
Confidence 5 799999999999999999887664332 44566777765
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=292.80 Aligned_cols=269 Identities=18% Similarity=0.329 Sum_probs=223.3
Q ss_pred eeEEEEecCCCC-CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE---EEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 307 VSLKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH---VYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 307 ~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
+.+...+.+|.. .|.+++|+|++++|++|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 466778899988 99999999999999999999999999999886432 23578899999999999999999999999
Q ss_pred EEEEeCCCCe--EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCCCCE
Q 008005 383 ICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 383 i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~ 455 (581)
|++||+.... .......|...|.+++|+|++++|++++.|+.|++||+.... .....|...|.+++|+|++++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999997653 344455677799999999999999999999999999998754 234467888999999999999
Q ss_pred EEEEeeCCcEEEEEecCCC-ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC---------------C
Q 008005 456 LLVNLINQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT---------------G 519 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~---------------~ 519 (581)
|++++.|+.|++||..... .....+.+|...+. .+.++|++++|++|+.|+.|++||... .
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~---~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVW---SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE---EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE---EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 9999999999999998762 23467788887744 444589999999999999999999532 1
Q ss_pred ceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc--------------ccccCCCceEEecCC
Q 008005 520 ELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM--------------KHRDQSNGIVHHCNG 579 (581)
Q Consensus 520 ~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~--------------~~~~~~~~~~~~~~G 579 (581)
+++..+.+ |...|.+++|+|++ ..|++++.|+.|++|+.+.... .+......+.|+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred ceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence 33455555 88999999999999 6999999999999999875431 123346678888876
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=295.22 Aligned_cols=298 Identities=15% Similarity=0.256 Sum_probs=244.0
Q ss_pred cccccceeecccccCcEEEEEEcCC---CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe
Q 008005 259 RIPSQTLQILEAHSDEVWFLQFSHD---GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC 335 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~---g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~ 335 (581)
..|.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+.+. .....+.+|...|++++|+|++++|+++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 4567788899999999999999999 69999999999999999986332 3446778899999999999999999999
Q ss_pred eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEE--ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC
Q 008005 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
+.||.|++||+.+++.+. +..|...|.+++| ++++..|++++.||.|++||++++........+. .+.++.+. .
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~ 180 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--Y 180 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--T
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--C
Confidence 999999999999998766 5578899999999 8899999999999999999998766554444443 55555555 5
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeEE----ecCCceEEEEECCCCCE----EEEEeeCCcEEEEEecCCC--ceeEEEecc
Q 008005 414 KRIISICREAAILLLDREANFERWI----EEEEVITSFSLSKDNKY----LLVNLINQEIHLWSIESDP--KLVSRYKGH 483 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~i~~~~~sp~~~~----l~~~~~d~~i~iwd~~~~~--~~~~~~~~~ 483 (581)
..+++++.++.+.+|+++....... .....+.++.+.++... +++++.|+.|++||++... .....+.+|
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 5899999999999999988762222 23345566666555444 9999999999999998763 345566666
Q ss_pred ccce---------eEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcE
Q 008005 484 KRAR---------FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 484 ~~~~---------~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
.... ..+..+.++|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++.|+..
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~ 339 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NIFAYASSYDWS 339 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SCEEEEECCCST
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-CeEEEEeccccc
Confidence 5421 025555569999999999999999999999999999999999999999999999 799999999877
Q ss_pred EEecCCcc
Q 008005 555 RIWGLDQI 562 (581)
Q Consensus 555 ~iW~~~~~ 562 (581)
+.|++-..
T Consensus 340 ~~~~~~~~ 347 (368)
T 3mmy_A 340 KGHEFYNP 347 (368)
T ss_dssp TCGGGCCT
T ss_pred ccccccCC
Confidence 76665443
No 61
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-35 Score=341.81 Aligned_cols=315 Identities=18% Similarity=0.276 Sum_probs=263.5
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCC
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQE 338 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~d 338 (581)
..+.+..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++ .....+.+|...|.+++|+| ++.++++++.|
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d 722 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence 34567888999999999999999999999999999999999876 45677889999999999999 55689999999
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe-----------------------
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----------------------- 395 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------------- 395 (581)
|.|++||+.++++...+..|...|.+++|+|+++.+++++.||.|++||+.++....
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 999999999999999999999999999999999999999999999999986543211
Q ss_pred --------------------------------eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecC
Q 008005 396 --------------------------------WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEE 441 (581)
Q Consensus 396 --------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~ 441 (581)
....+...+.+++|+|+++.+++++.++.|++||..++. .....|.
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence 111445678899999999999999999999999999887 4556788
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc----------------------------eeEEEeccccc-----ee
Q 008005 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK----------------------------LVSRYKGHKRA-----RF 488 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~----------------------------~~~~~~~~~~~-----~~ 488 (581)
..|.+++|+|+++++++++.|+.|++||+.+... ......+.... ..
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 9999999999999999999999999999753100 00001111100 11
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccccc
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
.+.++.++|+++++++|+.||.|++||+.+++....+.+|...|++++|+|++ .+|++++.||.|++|++.+++.....
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEECCB
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceEEEe
Confidence 24555669999999999999999999999999999999999999999999999 79999999999999999987755332
Q ss_pred ----CCCceEEecCC
Q 008005 569 ----QSNGIVHHCNG 579 (581)
Q Consensus 569 ----~~~~~~~~~~G 579 (581)
....+.++++|
T Consensus 1042 ~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDS 1056 (1249)
T ss_dssp CCSSCEEEEEECSSS
T ss_pred cCCCcEEEEEEcCCC
Confidence 23444555554
No 62
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=304.36 Aligned_cols=286 Identities=17% Similarity=0.327 Sum_probs=231.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC--------eeeEEEEecCCC------------CCEEEEEeCCCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--------QVSLKHRLSGHR------------KPVFTVSWSPND 329 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~--------~~~~~~~~~~h~------------~~V~~l~~sp~~ 329 (581)
.|.+.|++++|+|+|++||+|+.||.|+||++.++. .+.....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 378999999999999999999999999999998543 233567888998 889999999998
Q ss_pred --CeEEEeeCCCcEEEEEcCCCcEE---------------------------------------EE-EecCCCeEEEEEE
Q 008005 330 --HQLLTCGQEEAIRRWDVNSGECL---------------------------------------HV-YEKTGVGLISCGW 367 (581)
Q Consensus 330 --~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~ 367 (581)
.+|++++.|++|++||+.++... .. ...|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3578899999999
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCC-CeEEe-------eccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCee---
Q 008005 368 FLDGGGIFAGMTDKSICLWDLDG-RELES-------WKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFE--- 435 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~vwd~~~-~~~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--- 435 (581)
+|+++.|++| .|+.|++||++. ..... ....+...|.+++|+|++ +.+++++.|+.|++||++++..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999983 33333 234566789999999998 9999999999999999988652
Q ss_pred --e-EEecCC------------ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee------------
Q 008005 436 --R-WIEEEE------------VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF------------ 488 (581)
Q Consensus 436 --~-~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------ 488 (581)
. +..+.. .|.+++|+|++++|++++. +.|++||++....++..+.+|.....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 2 233333 8999999999999999998 99999999974478888888764221
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec---------------------------------cCCCCEEEE
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA---------------------------------GHSGSVNCV 535 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~---------------------------------~h~~~v~~l 535 (581)
.+..+.++|++.+|++|+.||.|++||+.+++.+. +. .+...|.++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 01113448999999999999999999999987753 22 234578999
Q ss_pred EEcCCCCcEEEEEECCCcEEEecCC
Q 008005 536 SWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+|+|++ .+||+++.++ +++|.-+
T Consensus 423 ~~~p~~-~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKE-NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSS-SEEEEECSSC-EEEEECC
T ss_pred EECCCC-CEEEEEecce-eeeeccc
Confidence 999999 6898888775 7777643
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-36 Score=304.06 Aligned_cols=269 Identities=15% Similarity=0.275 Sum_probs=231.7
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
.+...+.+|.+.|++++|+|++++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCe-------EEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCeee-E------EecCCceEEEEECC-
Q 008005 388 LDGRE-------LESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREANFER-W------IEEEEVITSFSLSK- 451 (581)
Q Consensus 388 ~~~~~-------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~-~------~~~~~~i~~~~~sp- 451 (581)
+.... .......|...+.++.|.|+ +..+++++.|++|++||+.++... . ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 86422 22334566678999999997 457999999999999999988722 2 34678899999987
Q ss_pred CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC--
Q 008005 452 DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-- 529 (581)
Q Consensus 452 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-- 529 (581)
++++|++|+.|+.|++||++.....+..+.+|...+..+ .++|++.+|++|+.||+|++||+.+++.+..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v---~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV---KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE---EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE---EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 889999999999999999986557888899998875544 448999999999999999999999999988876543
Q ss_pred -----CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc---------cccCCCceEEecCCC
Q 008005 530 -----GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK---------HRDQSNGIVHHCNGR 580 (581)
Q Consensus 530 -----~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~---------~~~~~~~~~~~~~G~ 580 (581)
..|++++|+|++ .+|++|+.||.|++||+..++.. +......+.|+|||+
T Consensus 294 ~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp SCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred cccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 248999999999 79999999999999999876643 233467788999986
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.9e-35 Score=301.57 Aligned_cols=280 Identities=22% Similarity=0.368 Sum_probs=237.7
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
....+|...|+|++| ++++|++|+.||+|++||+.++ .....+.+|...|.+++| ++++|++|+.||+|++||
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEE
Confidence 344567888999887 7899999999999999999876 456778899999999999 688999999999999999
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE---eeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE---SWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
+.+++.+..+..|...|.++.|+ +..+++|+.||.|++||+.+.... .....+...|.++++ +++.+++++.|
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 99999999999999999999996 459999999999999999765432 455566778999998 78899999999
Q ss_pred CeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 423 AAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 423 g~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
+.|++||++++. .....+...+.++.+ +++++++++.|+.|++||++++ ..+..+.+|...+..+. + ++.
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~---~--~~~ 347 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR---F--DNK 347 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEE---C--CSS
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEE---e--cCC
Confidence 999999999877 455568889999999 5789999999999999999987 78888998888755443 2 789
Q ss_pred EEEEEeCCCcEEEEeCCCCc---------eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 501 FIASGSEDSQVYIWHRYTGE---------LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
+|++|+.||.|++||+.++. ++..+.+|.+.|++++| ++ .+|++++.||+|++||+.+......
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC---------
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECCCCCCccc
Confidence 99999999999999987766 88899999999999999 45 6899999999999999987765443
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-34 Score=296.42 Aligned_cols=301 Identities=20% Similarity=0.397 Sum_probs=256.0
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
++..+.++.+.+|+.. ..+.+..+.+|.+.|++++|+ +.++++|+.||+|++||+.++ .....+.+|.
T Consensus 132 l~sg~~dg~i~vwd~~-------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~ 199 (445)
T 2ovr_B 132 IVSGSDDNTLKVWSAV-------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYGHT 199 (445)
T ss_dssp EEEEETTSCEEEEETT-------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred EEEEECCCcEEEEECC-------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECCCC
Confidence 3455566677777543 345678889999999999997 569999999999999999876 5667888999
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 397 (581)
..|.++.|+ ++.+++|+.||.|++||+.+++.+..+..|...+.++.| ++..+++|+.||.|++||++++......
T Consensus 200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 999999995 568999999999999999999999999999999999998 7889999999999999999988877777
Q ss_pred cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
..+...|.++++ ++..+++++.|+.|++||++++. .....+...+.++.+ +++++++++.||.|++||++++ +
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~ 350 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-Q 350 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-C
T ss_pred cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-c
Confidence 777778999998 88999999999999999999887 344567777888777 5679999999999999999887 7
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-----ccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-----AGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
.+..+.++......+.++.+ ++.++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .++++++.
T Consensus 351 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~ 427 (445)
T 2ovr_B 351 CLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSR 427 (445)
T ss_dssp EEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECS
T ss_pred EEEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-EEEEEccc
Confidence 77788763322222333332 4689999999999999999999999888 5788999999999999 79999999
Q ss_pred CCc----EEEecCCcc
Q 008005 551 DRT----IRIWGLDQI 562 (581)
Q Consensus 551 Dg~----I~iW~~~~~ 562 (581)
||+ |.+||++..
T Consensus 428 dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 428 NGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSSSCCEEEEEECCCC
T ss_pred CCCCccEEEEEECCCC
Confidence 998 999999753
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-34 Score=288.62 Aligned_cols=274 Identities=17% Similarity=0.254 Sum_probs=219.8
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
.++..+.|..+.+|+............+...+.+|...|++++|+|++.++++|+.|++|++||+.++ .....+.+|
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h 117 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGH 117 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---CEEEEEECC
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEEEcCC
Confidence 45667778888888754433222234567789999999999999999999999999999999999876 455778899
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe---cCCCeEEEEEEecCC----------CeEEEEeCCCcE
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE---KTGVGLISCGWFLDG----------GGIFAGMTDKSI 383 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~sg~~dg~i 383 (581)
...|.+++|+|++++|++++.|++|++||+.. ....... .|...|.+++|+|++ .++++++.||.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999999999999999999999984 4444433 678889999999986 789999999999
Q ss_pred EEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEee
Q 008005 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 384 ~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
++||.... .......|...|.+++|+|++++|++++.|+.|++||+.... .....+...|.+++|+|++.++++ +.
T Consensus 197 ~iwd~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~ 274 (343)
T 2xzm_R 197 KVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GT 274 (343)
T ss_dssp EEEETTTE-EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE-EE
T ss_pred EEEcCCCc-eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE-EC
Confidence 99996544 333444566689999999999999999999999999995433 444456778999999999988765 45
Q ss_pred CCcEEEEEecCCCce-eEEEe-----------ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 462 NQEIHLWSIESDPKL-VSRYK-----------GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 462 d~~i~iwd~~~~~~~-~~~~~-----------~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
|+.|++||+.+.... +..+. +|... +..+.++|++++|++|+.||.|++|++.++
T Consensus 275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ---CTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC---EEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc---eEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 889999999875221 11332 33333 445556999999999999999999998765
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-34 Score=311.94 Aligned_cols=305 Identities=17% Similarity=0.251 Sum_probs=255.9
Q ss_pred CCCCceeeccCCCCcccccccceeecccccCc-EEEEEEcC--CCCEEEEEeCCCeEEEEEcccCC-----eeeEEEEec
Q 008005 243 SDSDFSLYSDHQCGRNRIPSQTLQILEAHSDE-VWFLQFSH--DGKYLASSSKDQSAIIWEVKEDG-----QVSLKHRLS 314 (581)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~-----~~~~~~~~~ 314 (581)
.+..+.+|+.... ..+.+....+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++. .......+.
T Consensus 37 ~~~~v~v~~~~~~---~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 113 (615)
T 1pgu_A 37 CGKSAFVRCLDDG---DSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 113 (615)
T ss_dssp ETTEEEEEECCSS---CCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred cCCeEEEEECCCC---CCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh
Confidence 3556666654321 1122578889999999 99999999 99999999999999999996431 235667788
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCC----CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCC
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLD 389 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~ 389 (581)
.|..+|.+++|+|++++|++++.+ +.|++|| +++.+..+..|...|.+++|+|++. .+++++.|+.|++||+.
T Consensus 114 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 114 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence 899999999999999999999987 6888887 6788899999999999999999998 79999999999999999
Q ss_pred CCeEEeeccCccc---cEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-eeEE-----ecCCceEEEEECCCCCEEEEE
Q 008005 390 GRELESWKGQKTL---RISDMAITDD-GKRIISICREAAILLLDREANF-ERWI-----EEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 390 ~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~-----~~~~~i~~~~~sp~~~~l~~~ 459 (581)
+.........+.. .|.+++|+|+ ++++++++.|+.|++||+.++. .... .+...|.+++|+ ++++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 8888777777777 8999999999 9999999999999999998877 3333 788999999999 99999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccc-eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc
Q 008005 460 LINQEIHLWSIESDPKLVSRYKGHKRA-RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~ 538 (581)
+.|+.|++||+.+. +.+..+..+... ...+..+.++ ++.++++++.||.|++||+.+++.+..+.+|.+.|++++|
T Consensus 271 ~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~- 347 (615)
T 1pgu_A 271 GADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV- 347 (615)
T ss_dssp ETTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-
T ss_pred cCCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-
Confidence 99999999999987 777777766211 1112223323 8899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEECCCcEEEecCC
Q 008005 539 PANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 539 p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
|+ +++++.||.|++|++.
T Consensus 348 ~~----l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 NP----LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TT----TEEEETTSCEEETTTT
T ss_pred cC----cEEECCCCeEEEEEch
Confidence 75 7777777777777766
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3e-34 Score=308.99 Aligned_cols=307 Identities=16% Similarity=0.237 Sum_probs=243.3
Q ss_pred cceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC---CEEEEEeCCC-CCeEEEeeC
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPN-DHQLLTCGQ 337 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~l~s~~~ 337 (581)
+.+..+.+|.+.|++++|+|+++ ++++++.|+.|++||..+. .....+.+|.. .|.+++|+|+ +++|++++.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc---ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 46778889999999999999998 8999999999999998765 56678889999 9999999999 999999999
Q ss_pred CCcEEEEEcCCCcEEEEE-e---cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc----cccEEEEEE
Q 008005 338 EEAIRRWDVNSGECLHVY-E---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK----TLRISDMAI 409 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~i~~ 409 (581)
||.|++||+.+++.+..+ . .|...|.+++|+ ++..+++++.|+.|++||+++++.......+ ...+.++.+
T Consensus 228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 999999999999999998 6 889999999999 9999999999999999999877665544433 346777777
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCC---------------------------------ceEEEEECCCCC
Q 008005 410 TDDGKRIISICREAAILLLDREANF--ERWIEEEE---------------------------------VITSFSLSKDNK 454 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---------------------------------~i~~~~~sp~~~ 454 (581)
. ++..+++++.++.|++||+.+.. .....|.. .|.+++| +++.
T Consensus 307 ~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~ 384 (615)
T 1pgu_A 307 T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQ 384 (615)
T ss_dssp E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTT
T ss_pred C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCc
Confidence 5 88899999999999999987654 22222332 3333333 2234
Q ss_pred EEEEEee-------------------------------------------------------------------------
Q 008005 455 YLLVNLI------------------------------------------------------------------------- 461 (581)
Q Consensus 455 ~l~~~~~------------------------------------------------------------------------- 461 (581)
.+++++.
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 4444444
Q ss_pred -CCcEEEEEecCCCcee-EEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEEEEEc
Q 008005 462 -NQEIHLWSIESDPKLV-SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWN 538 (581)
Q Consensus 462 -d~~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~ 538 (581)
++.|++||+.+. ... ..+.+|... +..+.++|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+
T Consensus 465 ~d~~i~~~~~~~~-~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s 540 (615)
T 1pgu_A 465 EGNTIQVFKLSDL-EVSFDLKTPLRAK---PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 540 (615)
T ss_dssp TTSCEEEEETTEE-EEEEECSSCCSSC---EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred CCCeEEEEECCCc-cccccccCCccCc---eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc
Confidence 444444444432 111 233344444 44555599999999999999999999999999999988 99999999999
Q ss_pred C----------CCCcEEEEEECCCcEEEecCCcc-cccc-----ccCCCceEEecCCC
Q 008005 539 P----------ANLHMLASASDDRTIRIWGLDQI-NMKH-----RDQSNGIVHHCNGR 580 (581)
Q Consensus 539 p----------~~~~~l~s~s~Dg~I~iW~~~~~-~~~~-----~~~~~~~~~~~~G~ 580 (581)
| ++ .+|++++.||.|++|++.++ +... ......+.|+++|+
T Consensus 541 p~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 541 PAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 597 (615)
T ss_dssp CCC------CCSC-CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred CccccccccccCC-CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC
Confidence 9 88 79999999999999999987 4332 23356788888874
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-34 Score=291.99 Aligned_cols=241 Identities=21% Similarity=0.420 Sum_probs=209.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
..|++++|+|+|++||+|+.|++|+|||+.++ .....+.+|...|.+++|+|++.+|++++.|++|++||+.++++.
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 35999999999999999999999999999866 566788999999999999999999999999999999999999988
Q ss_pred EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeec-------cCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 353 HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK-------GQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
..+. +...+.+++|+| ++.++++|+.|+.|++||++++...... ..|...|.+++|+|+++++++++.|+.
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 7775 456799999999 8999999999999999999877654433 356678999999999999999999999
Q ss_pred EEEEECCCCe--------------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008005 425 ILLLDREANF--------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 425 i~i~d~~~~~--------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
|++||+++.. ..+..|...|.+++|+|++.+|++++.|+.|++||+.++ ..+..+.+|...+..+
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEE
Confidence 9999987532 344568889999999999999999999999999999987 7788899999886665
Q ss_pred Eeee---cCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 491 RSCF---GGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 491 ~~~~---~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+.. ++|++.+|++|+.||.|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 5432 346889999999999999999754
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-34 Score=280.89 Aligned_cols=247 Identities=13% Similarity=0.220 Sum_probs=208.3
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC--CcEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEE
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vw 386 (581)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.+ ++.+..+.+|...|.+++|++ ++..|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 35778999999999999999999999999999999974 467788999999999999986 38899999999999999
Q ss_pred eCCCCe--EEeeccCccccEEEEEEeeC--CCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECCC------
Q 008005 387 DLDGRE--LESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKD------ 452 (581)
Q Consensus 387 d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~------ 452 (581)
|++++. .......|...|.+++|+|+ +..|++++.|+.|++||+++.. .....|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998753 22333456668999999998 8999999999999999998753 345678889999999997
Q ss_pred -------CCEEEEEeeCCcEEEEEecCCCc---eeEEEeccccceeEEEeeecCCC---CcEEEEEeCCCcEEEEeCCCC
Q 008005 453 -------NKYLLVNLINQEIHLWSIESDPK---LVSRYKGHKRARFVIRSCFGGFE---QAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 453 -------~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+++|++++.|+.|++||+++... ....+.+|...+.. +.++|+ +.+|++++.|++|++||+.++
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~---v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD---VAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE---EEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE---EEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 57999999999999999987632 45677888877444 444777 489999999999999998764
Q ss_pred c---eEEEe--ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 520 E---LVLAL--AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 520 ~---~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
. ....+ ..|...|.+++|+|++ .+|++++.||+|++|+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred CCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence 3 22333 5688999999999999 7999999999999999863
No 71
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-36 Score=312.42 Aligned_cols=314 Identities=10% Similarity=0.083 Sum_probs=225.8
Q ss_pred cCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCC------CCEEEEEeCCCeEEEEEcccCCee-------
Q 008005 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHD------GKYLASSSKDQSAIIWEVKEDGQV------- 307 (581)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~------g~~lasgs~dg~i~iwd~~~~~~~------- 307 (581)
.+.+..+.+|+-.... .......++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+..+...
T Consensus 179 ~s~D~tI~iWd~~~~~---~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 179 EKHSSCIQIFKMNTST---LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ---CEEEEEEEEETTT---CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred CCCCceEEEEEccCCC---CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 3455567777632211 111123457788999999999997 579999999999999999754311
Q ss_pred -eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-EEEEEecCCCeEEEE--EEecCC-CeEEEEeCCCc
Q 008005 308 -SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CLHVYEKTGVGLISC--GWFLDG-GGIFAGMTDKS 382 (581)
Q Consensus 308 -~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~sg~~dg~ 382 (581)
.....+.+|...|++++|+++ ..|++|+.||+|++||+.++. ....+..|...|.++ .|++++ ..|++|+.|++
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred cCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 123467889999999999986 489999999999999999774 455688999999999 567777 88999999999
Q ss_pred EEEEeCCCCeEEeeccCcc--ccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEE
Q 008005 383 ICLWDLDGRELESWKGQKT--LRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
|++||+++.........+. ..|.+++|+|+++.+++++.|++|++||+++.. ..+..|...|.+++|+|++++|++
T Consensus 335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999997654322222221 247899999999999999999999999999876 556789999999999999999999
Q ss_pred EeeCCcEEEEEecCCCceeEEEeccc--cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC-CCceEEEeccCCCCEEEE
Q 008005 459 NLINQEIHLWSIESDPKLVSRYKGHK--RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY-TGELVLALAGHSGSVNCV 535 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~v~~l 535 (581)
|+.|++|++||+... ....+..+. .....+....++|++..+. ...+ +.+|+.. ++..+..+.+|...|++|
T Consensus 415 gs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~V 489 (524)
T 2j04_B 415 GSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCT 489 (524)
T ss_dssp EETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCE
T ss_pred EECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEE
Confidence 999999999998653 222111110 0111233344488888552 2222 3344432 577888899999999999
Q ss_pred EEcCCCC--cEEEEEECCCcEEEecCCccc
Q 008005 536 SWNPANL--HMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 536 ~~~p~~~--~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+|+|+++ ..+++|+.||+|+||++....
T Consensus 490 afsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 490 KWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp EECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred ECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 9999962 489999999999999987543
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=322.16 Aligned_cols=199 Identities=11% Similarity=0.090 Sum_probs=172.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
..+|.+.|++++|+|++++||+|+.||+|+||+.... ..... ..|..+|.+++|+| +++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 4589999999999999999999999999999998653 23333 35888999999999 8899999999999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe-----------eccCccccEEEEEEeeC-CCE
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-----------WKGQKTLRISDMAITDD-GKR 415 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-----------~~~~~~~~i~~i~~~~~-~~~ 415 (581)
+++++..+. +...|++++|+|+++++++|+.||.|++||++++.... ....|...|.+++|+|+ +..
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence 999998886 66789999999999999999999999999998877542 22346678999999996 578
Q ss_pred EEEEEcCCeEEEEECCCCee-eEE-ec------------------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 416 IISICREAAILLLDREANFE-RWI-EE------------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~-~~~-~~------------------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
+++++.|+.| +||+++... ... .+ ...|.+++|+|++++|++++.|+.|++||++++
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999 999998772 222 22 367999999999999999999999999999875
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.7e-34 Score=280.05 Aligned_cols=249 Identities=14% Similarity=0.277 Sum_probs=206.3
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC--CCeEEEeeCCCcEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i~ 342 (581)
+..+.+|.+.|++++|+|+|++||+|+.|++|+||++... .......+.+|.++|.+++|+|+ +++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 3467899999999999999999999999999999999743 22456788999999999999874 89999999999999
Q ss_pred EEEcCCCc--EEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEeeC----
Q 008005 343 RWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDD---- 412 (581)
Q Consensus 343 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~~---- 412 (581)
+||+.+++ .+..+..|...|.+++|+|+ +..|++++.|+.|++||++... .......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 56677789999999999997 8899999999999999997642 12333456668999999997
Q ss_pred ---------CCEEEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEECCCC---CEEEEEeeCCcEEEEEecCCC
Q 008005 413 ---------GKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDN---KYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 413 ---------~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~ 474 (581)
++.|++++.|+.|++||+++.. ..+..|...|.+++|+|++ .+|++++.|+.|++||+....
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999987653 2344688999999999984 899999999999999998742
Q ss_pred c--eeEEE--eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 475 K--LVSRY--KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 475 ~--~~~~~--~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
. ....+ ..|... +..+.++|++++|++++.||.|++|+..
T Consensus 241 ~~~~~~~~~~~~~~~~---v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 241 GPWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCEEEESSSSCCSSC---EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CccceeeeecccCCCc---EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2 12223 234443 3344559999999999999999999975
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.3e-35 Score=287.20 Aligned_cols=248 Identities=19% Similarity=0.288 Sum_probs=202.4
Q ss_pred eecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeCCCcEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRR 343 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~v 343 (581)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.++|.+++|+| ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3567999999999999999999999999999999998642 235677899999999999986 4899999999999999
Q ss_pred EEcCCC--cEEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCe---EEeeccCccccEEEEEEeeC----
Q 008005 344 WDVNSG--ECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMAITDD---- 412 (581)
Q Consensus 344 wd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~i~~~~~---- 412 (581)
||++++ .....+..|...|.+++|+|+ +..|++|+.|+.|++||++... .......|...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 999987 466778889999999999997 7899999999999999997652 23344566678999999997
Q ss_pred -------------CCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCCC----CEEEEEeeCCcEEEEEe
Q 008005 413 -------------GKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSI 470 (581)
Q Consensus 413 -------------~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~ 470 (581)
+++|++++.|+.|++||.+... ..+..|...|.+++|+|++ .+|++++.|+.|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 4789999999999999997541 3345688899999999986 89999999999999999
Q ss_pred cCCC---ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 471 ESDP---KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 471 ~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.+.. .....+..|... +..+.++|++.+|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~---v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDV---VWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSTTCCCCBCCEEEECSSC---EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCccccchhhhhhhcCCCc---EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7621 123345556555 3344559999999999999999999965
No 75
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=281.88 Aligned_cols=248 Identities=17% Similarity=0.258 Sum_probs=205.1
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC--cEEEEE-ec-CCCeEEEEEEecCCCeEEEEeCCCcE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVY-EK-TGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.....+.+|.++|.+++|+|+ +|++|+.|++|++||+.++ +....+ .. |...|.+++|+|++++|++|+.|++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 566788999999999999987 9999999999999999875 445555 34 88999999999999999999999999
Q ss_pred EEEeCCC-------CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC-e-----eeEEecCCceEEEEEC
Q 008005 384 CLWDLDG-------RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-F-----ERWIEEEEVITSFSLS 450 (581)
Q Consensus 384 ~vwd~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~i~~~~~s 450 (581)
++||+.. .........|...|.+++|+|++++|++++.|++|++||++.. . ..+..|...|.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999853 2344445567779999999999999999999999999999532 1 2345688899999999
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccccceeEEEeeecCCC--CcEEEEEeCCCcEEEEeCCCC--------
Q 008005 451 KDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFE--QAFIASGSEDSQVYIWHRYTG-------- 519 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~sgs~dg~I~iwd~~~~-------- 519 (581)
|++.+|++++.|+.|++||..+.. ..+..+.+|...+..+ .++|+ +.+|++|+.|++|++||+.++
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS---DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE---EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEE---EecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999999999999999999987642 4677888898875443 33666 678999999999999998764
Q ss_pred ceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 520 ELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 520 ~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.....+.+ |...|.+++|++++ +|++++.||+|++|+..++
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETT
T ss_pred EEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC
Confidence 34555655 99999999999765 7999999999999998765
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=292.17 Aligned_cols=253 Identities=15% Similarity=0.273 Sum_probs=213.5
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC--CCeEEEeeCCCcE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i 341 (581)
++.++.+|.+.|++++|+|++++||+|+.||.|+||++.. ........+.+|...|++++|+++ +.+|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC-CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 5678899999999999999999999999999999999974 234667788999999999999987 8999999999999
Q ss_pred EEEEcCCCc--EEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEee----
Q 008005 342 RRWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITD---- 411 (581)
Q Consensus 342 ~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~---- 411 (581)
++||+.+++ .+..+..|...|.+++|+|+ +..+++++.|+.|++||++... .......+...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77778889999999999999 9999999999999999997652 2333445666899999999
Q ss_pred ---------CCCEEEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEECCC---CCEEEEEeeCCcEEEEEecCC
Q 008005 412 ---------DGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 412 ---------~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~ 473 (581)
++..+++++.|+.|++||+++.. .....|...|.+++|+|+ +++|++++.|+.|++||+.+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999997654 233457889999999999 899999999999999999886
Q ss_pred Ccee--EEEec--cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc
Q 008005 474 PKLV--SRYKG--HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520 (581)
Q Consensus 474 ~~~~--~~~~~--~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~ 520 (581)
.... ..+.. +... +..+.++|++++|++++.||.|++|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSC---EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCc---EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 3221 22222 3333 4455559999999999999999999987543
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-33 Score=292.06 Aligned_cols=299 Identities=20% Similarity=0.313 Sum_probs=247.9
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
++..+.++.+.+|+.. ..+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++ .....+.+|.
T Consensus 135 l~sgs~dg~i~vwd~~-------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~ 203 (464)
T 3v7d_B 135 VITGADDKMIRVYDSI-------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHN 203 (464)
T ss_dssp EEEEETTSCEEEEETT-------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred EEEEcCCCcEEEEECC-------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---cEEEEECCCC
Confidence 3455666777777543 345678889999999999999988 9999999999999999876 5667888999
Q ss_pred CCEEEEEeC--CCCCeEEEeeCCCcEEEEEcCCCc-----------------------EEEEEecCCCeEEEEEEecCCC
Q 008005 318 KPVFTVSWS--PNDHQLLTCGQEEAIRRWDVNSGE-----------------------CLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 318 ~~V~~l~~s--p~~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
..|.+++|+ +++.++++++.||+|++||+.++. ....+.+|...+.++ +++++
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~ 281 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN 281 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC
Confidence 999999998 578999999999999999998765 255667788888776 56789
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEEC
Q 008005 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS 450 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s 450 (581)
.+++|+.||.|++||+.++........+...|.+++|+|+++.+++++.|+.|++||++++. ..+..|...|.+++|+
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 99999999999999999888877777777899999999999999999999999999999887 4555788999999997
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE-eccCC
Q 008005 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-LAGHS 529 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~ 529 (581)
++++++++.||.|++||+.+.. ...... +.... ....+++++.++++|+ ||.|++||+.+++.+.. +..|.
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~~-~~~~~~-~~~~~---~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~ 433 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDYS-RKFSYH-HTNLS---AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA 433 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTCC-EEEEEE-CTTCC---CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTC
T ss_pred --CCEEEEEeCCCcEEEEECCCCc-eeeeec-CCCCc---cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCC
Confidence 5899999999999999999863 333332 22222 2233378899999998 89999999999999986 67889
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 530 GSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 530 ~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+.|.+++|++ . .++++++.||.+.+|-+
T Consensus 434 ~~v~~v~~~~-~-~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 434 DQIWSVNFKG-K-TLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp SEEEEEEEET-T-EEEEEEEETTEEEEEEE
T ss_pred CcEEEEEecC-C-EEEEEEEeCCeEEEEEe
Confidence 9999999984 3 57777788887666543
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-34 Score=319.57 Aligned_cols=182 Identities=12% Similarity=0.165 Sum_probs=146.5
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
.....++.+.+|.... .+....+ .|...|++++|+| |++|++++.|++|+|||+.++. ....+. |..
T Consensus 33 Asgs~Dg~I~lw~~~~-------~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~---~~~~~~-~~~ 99 (902)
T 2oaj_A 33 AIATVTGEVHIYGQQQ-------VEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK---VLTTVF-VPG 99 (902)
T ss_dssp EEEETTSEEEEECSTT-------CEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS---EEEEEE-CSS
T ss_pred EEEeCCCEEEEEeCCC-------cEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc---EEEEEc-CCC
Confidence 3445666777775321 1222333 4888999999999 8899999999999999998764 334444 678
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE-----------EEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEE
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL-----------HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLW 386 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vw 386 (581)
.|++++|+|++++|++|+.||+|++||+.++++. ..+..|...|.+++|+|+ +..+++|+.||.| +|
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TY 178 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EE
Confidence 8999999999999999999999999999988764 123457889999999996 5789999999999 99
Q ss_pred eCCCCeEEeeccCc------------------cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 387 DLDGRELESWKGQK------------------TLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 387 d~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
|++++........+ ...|.+++|+|+|++|++++.|+.|++||++++.
T Consensus 179 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp ETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred ECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 99987765444332 3579999999999999999999999999987644
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-34 Score=316.67 Aligned_cols=323 Identities=10% Similarity=0.136 Sum_probs=265.0
Q ss_pred cCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCE
Q 008005 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPV 320 (581)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V 320 (581)
...++.+.+|+-. ..+.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|.+.|
T Consensus 31 ~~~~g~v~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~~v 100 (814)
T 3mkq_A 31 TLYSGRVEIWNYE-------TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPDYI 100 (814)
T ss_dssp EETTSEEEEEETT-------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCE
T ss_pred EeCCCEEEEEECC-------CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCE
Confidence 3345556666432 24467788899999999999999999999999999999999876 4556778999999
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEEcCCC-cEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeE-Eeec
Q 008005 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL-ESWK 397 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~~ 397 (581)
++++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.||.|++||+.+... ....
T Consensus 101 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 99999999999999999999999999987 67788889999999999999 888999999999999999976543 3334
Q ss_pred cCccccEEEEEEee--CCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 398 GQKTLRISDMAITD--DGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 398 ~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
..+...+.+++|+| ++..+++++.|+.|++||..++. .....+...|.+++|+|+++++++++.||.|++||+.+.
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 44446899999999 99999999999999999998877 444568889999999999999999999999999999987
Q ss_pred CceeEEEeccccceeEEEeeecCCCCc--EEEEEeCCCcEEEEeCCCCce----------EE------------------
Q 008005 474 PKLVSRYKGHKRARFVIRSCFGGFEQA--FIASGSEDSQVYIWHRYTGEL----------VL------------------ 523 (581)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~sgs~dg~I~iwd~~~~~~----------~~------------------ 523 (581)
.....+..+...+.. +.++|++. ++++++ ++.+.+|++..+.. +.
T Consensus 261 -~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 335 (814)
T 3mkq_A 261 -KVEKTLNVGLERSWC---IATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG 335 (814)
T ss_dssp -SEEEEECCSSSSEEE---EEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred -cEEEEeecCCCcEEE---EEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence 778888887776443 34477776 455554 66688888654321 11
Q ss_pred ---------------EeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccCCCceEEecCCC
Q 008005 524 ---------------ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 524 ---------------~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G~ 580 (581)
.+..|...+.+++|+|+| .++++++ ||.+.+|++.............+.|+|||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~ 405 (814)
T 3mkq_A 336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSN 405 (814)
T ss_dssp CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSS
T ss_pred ccccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCC
Confidence 112345568999999999 6888888 899999998877666666778899999886
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.2e-34 Score=282.11 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=200.9
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc--EEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEE
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vw 386 (581)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.++. .+..+.+|...|.+++|++ +++.|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3457899999999999999999999999999999998875 4677889999999999986 48899999999999999
Q ss_pred eCCCCe--EEeeccCccccEEEEEEeeC--CCEEEEEEcCCeEEEEECCCCe-----eeEEecCCceEEEEECCC-----
Q 008005 387 DLDGRE--LESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKD----- 452 (581)
Q Consensus 387 d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~----- 452 (581)
|++++. .......|...|.+++|+|+ +.+|++++.|+.|++||++... .....|...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998753 33334456678999999998 7899999999999999998753 222356778999999997
Q ss_pred ------------CCEEEEEeeCCcEEEEEecCCC--ceeEEEeccccceeEEEeeecCCCC----cEEEEEeCCCcEEEE
Q 008005 453 ------------NKYLLVNLINQEIHLWSIESDP--KLVSRYKGHKRARFVIRSCFGGFEQ----AFIASGSEDSQVYIW 514 (581)
Q Consensus 453 ------------~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~sgs~dg~I~iw 514 (581)
+++|++++.|+.|++||++... .....+.+|...+ ..+.++|++ .+|++++.||+|++|
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---RDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---EEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---EEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4789999999999999997542 3556677888764 444557775 899999999999999
Q ss_pred eCCCC---c-eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 515 HRYTG---E-LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 515 d~~~~---~-~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++.+. . ....+..|...|.+++|+|++ .+|++++.||+|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEEC
Confidence 98763 1 223456789999999999999 799999999999999986
No 81
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=273.61 Aligned_cols=284 Identities=19% Similarity=0.290 Sum_probs=229.9
Q ss_pred EEeCCCe--EEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCCc-----EEEEEecCCC
Q 008005 289 SSSKDQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTGV 360 (581)
Q Consensus 289 sgs~dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~ 360 (581)
+|...|+ +.++... ..++.+..++.+|.+.|++|+|+|+ +++|+||+.|++|+|||+.+++ +...+.+|..
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 3333344 3344443 2455677889999999999999997 6899999999999999987653 5677889999
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee---eE
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE---RW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~ 437 (581)
.|.+++|+|++.+|++++.|+.|++|+............+...+....+++++..+++++.|+.+++||...... ..
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 999999999999999999999999999998887777777777899999999999999999999999999987663 23
Q ss_pred EecCCceEEEEECCCC--CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 438 IEEEEVITSFSLSKDN--KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 438 ~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
..+...+..++|++++ .++++++.|+.|++||+.+. .....+.+|...+. ++.++|++++|++|+.||.|++||
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~---~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLN---TVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEE---EEEECTTSSEEEEEETTCEEEEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCcEE---EEEECCCCCEEEEEeCCCeEEEEE
Confidence 3567889999998864 57888999999999999987 78888889888744 444589999999999999999999
Q ss_pred CCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccc--------------ccCCCceEEecCCC
Q 008005 516 RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH--------------RDQSNGIVHHCNGR 580 (581)
Q Consensus 516 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~--------------~~~~~~~~~~~~G~ 580 (581)
+.+++.+..+..+ ..|.+++|+|++ .+++++.|+.|++||+++..... ......+.|+|||+
T Consensus 244 ~~~~~~~~~~~~~-~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 244 LNEGKHLYTLDGG-DIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp TTTTEEEEEEECS-SCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred eccCceeeeecCC-ceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 9999999888755 689999999987 46677789999999998765432 22245678888886
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5e-34 Score=290.87 Aligned_cols=285 Identities=15% Similarity=0.241 Sum_probs=231.7
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCee-eEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCC-
Q 008005 274 EVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG- 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~- 349 (581)
....++++|+...+ ++++.||.|+||++...+.. .....+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468888887644 45789999999999654322 23445788999999999999 9999999999999999999988
Q ss_pred ------cEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeec--cCccccEEEEEEeeCCCEEEEEE
Q 008005 350 ------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWK--GQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 350 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
+.+..+..|...|.+++|+|++ ..|++++.||.|++||++++...... ..+...|.+++|+|+++.|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6678889999999999999998 69999999999999999988776666 66777999999999999999999
Q ss_pred cCCeEEEEECCCCee--eE-EecCCc-eEEEEECCCCCEEEEE---eeCCcEEEEEecCCCceeEEEe-ccccceeEEEe
Q 008005 421 REAAILLLDREANFE--RW-IEEEEV-ITSFSLSKDNKYLLVN---LINQEIHLWSIESDPKLVSRYK-GHKRARFVIRS 492 (581)
Q Consensus 421 ~dg~i~i~d~~~~~~--~~-~~~~~~-i~~~~~sp~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~ 492 (581)
.|+.|++||++++.. .. ..+... +.++.|+|++++|+++ +.++.|++||+++...+..... .+... +..
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~ 272 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---VLL 272 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---CEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---eeE
Confidence 999999999998872 22 345444 8999999999999999 6899999999988755444443 33333 333
Q ss_pred eecCCCCcEEE-EEeCCCcEEEEeCCCCce-EEEecc--CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 493 CFGGFEQAFIA-SGSEDSQVYIWHRYTGEL-VLALAG--HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 493 ~~~~~~~~~l~-sgs~dg~I~iwd~~~~~~-~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
+.++|++.+++ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++ .++++ .|+.+++|++.++.+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCGG--GTEEEEEEEEETTEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc-cccee--cceeEEEEEcCCCcE
Confidence 44588999886 556799999999998874 444444 56899999999999 56654 677999999987654
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=271.96 Aligned_cols=267 Identities=15% Similarity=0.217 Sum_probs=233.6
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
.....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCe-------------eeEEecCC--ceEEE
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANF-------------ERWIEEEE--VITSF 447 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-------------~~~~~~~~--~i~~~ 447 (581)
+.++....... +...+.+++|+|+++.+++++.+ +.|++||+.... .....+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 98877665555 45589999999999999999999 999999987653 22233334 89999
Q ss_pred EECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc
Q 008005 448 SLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 448 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 527 (581)
+|+|++++|++++.++.|++||+.+....+..+..|...+ ..+.++|++.+|++++.||.|++||+.+++.+..+.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---eEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999998558888888888764 444558999999999999999999999999998887
Q ss_pred CCCCEEEEEEcCCCCcEEEEEECCC--------------cEEEecCCccccccc-----cCCCceEEecCCC
Q 008005 528 HSGSVNCVSWNPANLHMLASASDDR--------------TIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 528 h~~~v~~l~~~p~~~~~l~s~s~Dg--------------~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
+...+.+++|+|++ .++++++.++ .|++|++.+++.... .....+.|+|+|+
T Consensus 258 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 258 TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 78899999999999 6999999888 899999998876543 3356678888876
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-34 Score=296.08 Aligned_cols=306 Identities=9% Similarity=0.043 Sum_probs=223.9
Q ss_pred ceeecccccCcEEEEEEcCCC---------CEEEE-------------------EeCCCeEEEEEcccCCe-eeEEEEec
Q 008005 264 TLQILEAHSDEVWFLQFSHDG---------KYLAS-------------------SSKDQSAIIWEVKEDGQ-VSLKHRLS 314 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g---------~~las-------------------gs~dg~i~iwd~~~~~~-~~~~~~~~ 314 (581)
...++. +.+.|++|+|+|++ ++||+ ++.|++|+||++.++.. ......+.
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~ 204 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV 204 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE
Confidence 333444 67788888888876 56665 55788999999986542 12234466
Q ss_pred CCCCCEEEEEeCCC------CCeEEEeeCCCcEEEEEcCCCcE-----------EEEEecCCCeEEEEEEecCCCeEEEE
Q 008005 315 GHRKPVFTVSWSPN------DHQLLTCGQEEAIRRWDVNSGEC-----------LHVYEKTGVGLISCGWFLDGGGIFAG 377 (581)
Q Consensus 315 ~h~~~V~~l~~sp~------~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~sg 377 (581)
+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+..|...|.+++|+++ ..|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE
Confidence 78899999999996 57999999999999999987642 2367788899999999986 489999
Q ss_pred eCCCcEEEEeCCCC-eEEeeccCccccEEEE--EEeeCC-CEEEEEEcCCeEEEEECCCCe--eeEEecC--CceEEEEE
Q 008005 378 MTDKSICLWDLDGR-ELESWKGQKTLRISDM--AITDDG-KRIISICREAAILLLDREANF--ERWIEEE--EVITSFSL 449 (581)
Q Consensus 378 ~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~--~~i~~~~~ 449 (581)
+.||+|++||++++ ........|...|.++ ++++++ .+|++++.|++|++||+++.. .....+. ..+.+++|
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 99999999999864 3333345566789999 568887 899999999999999998866 3334443 24789999
Q ss_pred CCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--
Q 008005 450 SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-- 527 (581)
Q Consensus 450 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-- 527 (581)
+|++..+++++.|+.|++||+++. .....+.+|...+. .+.++|++++|++|+.||+|++||...+ .+..+..
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~~V~---sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~ 438 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRETTIT---AIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS 438 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSSCEE---EEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC----
T ss_pred CCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCCceE---EEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc
Confidence 999999999999999999999987 66677888888744 4445999999999999999999998654 2222111
Q ss_pred ---CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC-ccccc-----cccCCCceEEecCCC
Q 008005 528 ---HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD-QINMK-----HRDQSNGIVHHCNGR 580 (581)
Q Consensus 528 ---h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~-~~~~~-----~~~~~~~~~~~~~G~ 580 (581)
+...|.+++|+|++ ..+ ...+ .+++|... ++... +......+.|+|+|.
T Consensus 439 ~~~~~~~v~~v~~sp~g-~~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKD-DKY-RIDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp --CCCCEEEECBCCSSS-CEE-EECC--CCCCCC-------------CCCSCCCEEECCSTT
T ss_pred cceeeeEEEEeccCCCC-CeE-EccC--CceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 11247899999999 444 3333 34444433 22222 334578999999974
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=276.85 Aligned_cols=248 Identities=14% Similarity=0.242 Sum_probs=213.5
Q ss_pred EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC--CCcEEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEE
Q 008005 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICL 385 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~v 385 (581)
...+.+|.+.|++++|+|++++|++++.||.|++||+. +++.+..+..|...|.+++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 56777888899999999999977 899999999999999
Q ss_pred EeCCCCe--EEeeccCccccEEEEEEeeC--CCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECC------
Q 008005 386 WDLDGRE--LESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSK------ 451 (581)
Q Consensus 386 wd~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp------ 451 (581)
||+.++. .......+...|.+++|+|+ +..+++++.|+.|++||++... .....+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9998875 44555556679999999999 9999999999999999998873 44557888999999999
Q ss_pred -------CCCEEEEEeeCCcEEEEEecCCCc---eeEEEeccccceeEEEeeecCCC---CcEEEEEeCCCcEEEEeCCC
Q 008005 452 -------DNKYLLVNLINQEIHLWSIESDPK---LVSRYKGHKRARFVIRSCFGGFE---QAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 452 -------~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~l~sgs~dg~I~iwd~~~ 518 (581)
++.++++++.|+.|++||+++... ....+.+|... +..+.++|+ +.+|++++.||.|++||+.+
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc---EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 699999999999999999987633 34566677776 344455888 89999999999999999988
Q ss_pred Cc---eEE--EeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 519 GE---LVL--ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 519 ~~---~~~--~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+. ... ....|...|++++|+|++ .+|++++.||.|++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 64 222 233488999999999999 6999999999999999984
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-32 Score=280.86 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=228.9
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec-------------------------------------
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS------------------------------------- 314 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~------------------------------------- 314 (581)
..++.+++|+|+|++|+++ .++.|++||+.++........+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578899999999976666 57899999998876322333332
Q ss_pred -----------------CCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcC--CCcEEEEEe--cCCCeEEEEEEecCCC
Q 008005 315 -----------------GHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVN--SGECLHVYE--KTGVGLISCGWFLDGG 372 (581)
Q Consensus 315 -----------------~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 372 (581)
+|.+.|++++|+|++++| ++++.||.|++||+. +++++..+. .+...|.+++|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 345579999999999996 899999999999999 888888876 5578899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEe----eccCccccEEEEEEeeC---CCEEEEEEcCCeEEEEECCCCee--e-EEecCC
Q 008005 373 GIFAGMTDKSICLWDLDGRELES----WKGQKTLRISDMAITDD---GKRIISICREAAILLLDREANFE--R-WIEEEE 442 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~ 442 (581)
+|++|+.+|.|++|++....... ....|...|.+++|+|+ +++|++++.|+.|++||+.++.. . ...|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999997655432 34456678999999999 99999999999999999988762 2 336889
Q ss_pred ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc----------------------cceeEEEeeecCCCCc
Q 008005 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK----------------------RARFVIRSCFGGFEQA 500 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------~~~~~i~~~~~~~~~~ 500 (581)
.|.+++|+ ++++|++++.|+.|++||+.++ +.+..+..+. .....+..+.++|+++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 99999999 9999999999999999999987 6666665331 1112244455588999
Q ss_pred EEEEEe-CCCcEEEEeC--CCC---ceEEEeccCCCCEEEEEEcCCCCcEEEEEEC-------CCcEEEecCCc
Q 008005 501 FIASGS-EDSQVYIWHR--YTG---ELVLALAGHSGSVNCVSWNPANLHMLASASD-------DRTIRIWGLDQ 561 (581)
Q Consensus 501 ~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------Dg~I~iW~~~~ 561 (581)
++++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++ ++++++. +..|.+|.++.
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence 999999 8999999999 565 677788888 889999999954 5555443 55689998754
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.8e-32 Score=296.87 Aligned_cols=271 Identities=21% Similarity=0.293 Sum_probs=219.0
Q ss_pred ccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCC
Q 008005 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (581)
..+.|..+.+|+-.... .........+.+|.+.|++++|+|++++|++|+.||+|+|||+.++ .....+.+|...
T Consensus 400 s~s~D~~i~~W~~~~~~--~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~ 474 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDD--KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKD 474 (694)
T ss_dssp EEETTSEEEEEECCCST--TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSC
T ss_pred EEeCCCcEEEEEccCCC--cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCC
Confidence 33444555566432211 1122345678999999999999999999999999999999999876 556778899999
Q ss_pred EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE---ecCCCeEEEEEEecCC--CeEEEEeCCCcEEEEeCCCCeEE
Q 008005 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY---EKTGVGLISCGWFLDG--GGIFAGMTDKSICLWDLDGRELE 394 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~ 394 (581)
|.+++|+|++++|++|+.|++|++||+......... ..|...|.+++|+|++ ..+++|+.|+.|++||+++....
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999999998655433332 3577889999999986 57999999999999999988887
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 395 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.....|...|.+++|+|+++++++++.|+.|++||+.++. .....+...+.+++|+|++.++++++ ++.|++||+.+.
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 7777788899999999999999999999999999999887 44445677899999999998877665 677999999987
Q ss_pred CceeEEEecccc----------------ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 474 PKLVSRYKGHKR----------------ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 474 ~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..+..+..+.. ....+..+.++|++++|++|+.||.|++|++.
T Consensus 634 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 634 -SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 55555543221 11113445569999999999999999999975
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-32 Score=278.08 Aligned_cols=251 Identities=12% Similarity=0.137 Sum_probs=217.3
Q ss_pred eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc------EEEEEecCCCeEEEEEEecC----C---CeE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE------CLHVYEKTGVGLISCGWFLD----G---GGI 374 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l 374 (581)
.....+.+|.+.|++++|+| ++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45567889999999999998 799999999999999999988 78888899999999999999 9 999
Q ss_pred EEEeCCCcEEEEeCCCCeE-----EeeccCc-----cccEEEEEEe----eCCCE-EEEEEcCCeEEEEECCC------C
Q 008005 375 FAGMTDKSICLWDLDGREL-----ESWKGQK-----TLRISDMAIT----DDGKR-IISICREAAILLLDREA------N 433 (581)
Q Consensus 375 ~sg~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~-l~~~~~dg~i~i~d~~~------~ 433 (581)
++++.||.|++||+.++.. ......+ ...|.+++|+ |+++. +++++.|+.|++||+.+ .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999976653 3333334 4689999999 99999 99999999999999988 4
Q ss_pred e--e-----eEE-------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec---c---ccceeEEEee
Q 008005 434 F--E-----RWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---H---KRARFVIRSC 493 (581)
Q Consensus 434 ~--~-----~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~---~~~~~~i~~~ 493 (581)
. . .+. .+...+.+++|+|++ ++++++.|+.|++||+++. ..+..+.. | ... +..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~~~---i~~i 239 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNS---IRSV 239 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCC---EEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccCCc---cceE
Confidence 4 2 332 268889999999999 9999999999999999987 77888887 7 555 4455
Q ss_pred ecCCCCcEEEEEeCC---CcEEEEeCCCCceEEEecc-------------CCCCEEEEEEcCCCCcEEEEEECCCcEEEe
Q 008005 494 FGGFEQAFIASGSED---SQVYIWHRYTGELVLALAG-------------HSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 494 ~~~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~-------------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.++|++.+|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++ .+|++++.||.|++|
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence 558999999999999 9999999999999999998 99999999999999 799999999999999
Q ss_pred cCCcccccc
Q 008005 558 GLDQINMKH 566 (581)
Q Consensus 558 ~~~~~~~~~ 566 (581)
|+.+++...
T Consensus 319 d~~~~~~~~ 327 (397)
T 1sq9_A 319 DVKTKERIT 327 (397)
T ss_dssp ETTTTEEEE
T ss_pred EcCCCceeE
Confidence 998876543
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.3e-32 Score=275.45 Aligned_cols=267 Identities=11% Similarity=0.202 Sum_probs=219.8
Q ss_pred eEEEEecCCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEEe--cCCCeEEEEEEec-CCCeEEEEeCCCcE
Q 008005 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYE--KTGVGLISCGWFL-DGGGIFAGMTDKSI 383 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~sg~~dg~i 383 (581)
.....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.+++|+| ++..|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4556778999999999999998 999999999999999999988877776 5899999999999 77999999999999
Q ss_pred EEEeCCCCeEEeeccCc--cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCC-EEEEE
Q 008005 384 CLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNK-YLLVN 459 (581)
Q Consensus 384 ~vwd~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~-~l~~~ 459 (581)
++||+++.......... ...|.+++|+|+++.+++++.|+.|++||++... ..+..|...|.+++|+|+++ +++++
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99999987666655443 3579999999999999999999999999996555 55567889999999999999 99999
Q ss_pred eeCCcEEEEEecCC---CceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCC------
Q 008005 460 LINQEIHLWSIESD---PKLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHS------ 529 (581)
Q Consensus 460 ~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------ 529 (581)
+.|+.|++||+++. ...+..+ +|... +..+.++| ++.+|++++.|+.|++||+.+++....+.+|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKP---VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred eCCCEEEEEeCCCCCcccceEEEe-cCCCc---eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 99999999999873 1445555 56665 44445588 99999999999999999999988776666543
Q ss_pred -----------CCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC-------CCceEEecCCCC
Q 008005 530 -----------GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ-------SNGIVHHCNGRI 581 (581)
Q Consensus 530 -----------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-------~~~~~~~~~G~~ 581 (581)
+.+..++|+|++ .+ +++.||.|++||+.+++...... ...+.|+++|++
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred ccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 334456667766 34 77899999999999887654322 344588888863
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=262.87 Aligned_cols=262 Identities=18% Similarity=0.203 Sum_probs=224.5
Q ss_pred eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008005 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 386 (581)
......+.+|.+.|++++| |++.+|++++.||.|++||+.+++....+..|...|.+++|+|++..+++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4677889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC---eEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECC-CCCEEEEEeeC
Q 008005 387 DLDGR---ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNLIN 462 (581)
Q Consensus 387 d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d 462 (581)
++... ........+...|.+++| +++.+++++.|+.|++||..........+...+.+++|+| +++++++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 98542 334444556678999999 5779999999999999994444466777899999999988 99999999999
Q ss_pred CcEEEEEecCCCceeEEEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 463 QEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
+.|++||.. .....+.. +... +..+.+++++. +++++.||.|++||+.+++.+..+.+|.+.|++++|+|++
T Consensus 165 ~~i~i~d~~---~~~~~~~~~~~~~---i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 165 KTIKLWQND---KVIKTFSGIHNDV---VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp SCEEEEETT---EEEEEECSSCSSC---EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred CCEEEEecC---ceEEEEeccCccc---EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 999999932 55666666 6555 33444477877 8999999999999999999999999999999999999998
Q ss_pred CcEEEEEECCCcEEEecCCcccccccc-----CCCceEEecCCC
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKHRD-----QSNGIVHHCNGR 580 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~~-----~~~~~~~~~~G~ 580 (581)
.|++++.||.|++||+.+++..... ....+.|+++|+
T Consensus 238 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 238 --DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp --CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred --CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 4889999999999999988765432 345677888875
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.1e-32 Score=271.94 Aligned_cols=244 Identities=14% Similarity=0.130 Sum_probs=213.5
Q ss_pred ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
+..|..+|++++|+|++++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44589999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CeEEee--ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeE--EecCCceEEEEECCCCCEEEEEeeC
Q 008005 391 RELESW--KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERW--IEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 391 ~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~--~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
+..... ...+...|.+++|+|+++++++++.|+.|++||++... ... ..+...|.+++|+|++++|++++.|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 764332 24456689999999999999999999999999998765 111 2457889999999999999999999
Q ss_pred CcEEEEEecC-----------------CCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 463 QEIHLWSIES-----------------DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 463 ~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
+.|++||+.. ....+..+..|...+ ..+.++|++.+|++++.||.|++||+.+++.+..+
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV---HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE---EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeE---EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999641 226677777777763 34445899999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 526 AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..|...|++++|+|++ .+++++ .|+.|++|++.+
T Consensus 241 ~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence 9999999999999999 577666 999999999987
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.6e-32 Score=278.12 Aligned_cols=252 Identities=16% Similarity=0.280 Sum_probs=215.7
Q ss_pred EEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCC----------CcEEEEEecCCCeEEEEEEecCCC-eEEEEe
Q 008005 311 HRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNS----------GECLHVYEKTGVGLISCGWFLDGG-GIFAGM 378 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~ 378 (581)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+..|...+.+++|+|++. .|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999987 577788889999999999999988 999999
Q ss_pred CCCcEEEEeCCCCeE-------EeeccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCC---e--eeEEecCCceE
Q 008005 379 TDKSICLWDLDGREL-------ESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREAN---F--ERWIEEEEVIT 445 (581)
Q Consensus 379 ~dg~i~vwd~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~~~~i~ 445 (581)
.||.|++||+..... ......|...|.+++|+| ++..+++++.|+.|++||+++. . .....+...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999976221 223345667899999999 7789999999999999999976 2 44557889999
Q ss_pred EEEECCCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC-cEEEEEeCCCcEEEEeCCC-----
Q 008005 446 SFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQVYIWHRYT----- 518 (581)
Q Consensus 446 ~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~sgs~dg~I~iwd~~~----- 518 (581)
+++|+|++. ++++++.|+.|++||++....++..+..|...+.. +.++|++ .++++++.||.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~---i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ---VQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE---EEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE---EEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999887 68899999999999999866788889888877444 4447777 5799999999999999877
Q ss_pred ---------CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 519 ---------GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 519 ---------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+.+..+.+|...|++++|+|+++.+|++++.||.|+||++.+....
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 36788889999999999999999559999999999999999876543
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-31 Score=270.65 Aligned_cols=274 Identities=16% Similarity=0.260 Sum_probs=220.6
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeccc-ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
++....+..+.+|+... .+....+.. |.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|
T Consensus 106 l~~~~~d~~v~lw~~~~-------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~ 175 (401)
T 4aez_A 106 VVAVALERNVYVWNADS-------GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGH 175 (401)
T ss_dssp EEEEEETTEEEEEETTT-------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCC
T ss_pred EEEEECCCeEEEeeCCC-------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCC
Confidence 34445555666665432 223344443 8999999999999999999999999999999876 455778899
Q ss_pred CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC-CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
...|.+++| ++.+|++++.||.|++||+. .+.....+..|...|.+++|+|++..|++|+.||.|++||++++....
T Consensus 176 ~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 176 QARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred CCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE
Confidence 999999999 46799999999999999998 567788899999999999999999999999999999999999877776
Q ss_pred eccCccccEEEEEEeeCCCE-EEEEE--cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe--eCCcEEEEE
Q 008005 396 WKGQKTLRISDMAITDDGKR-IISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--INQEIHLWS 469 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~-l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd 469 (581)
....+...|.+++|+|++.. +++++ .|+.|++||+.++. .....+...+.+++|+|+++++++++ .|+.|++||
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 66667779999999997754 45544 69999999999877 55667888999999999999999954 899999999
Q ss_pred ecCCC-ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008005 470 IESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 470 ~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 526 (581)
+.+.. .....+.+|...+.. +.++|++.+|++++.||.|++|++.+++.+....
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~~---~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVLY---SALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EETTEEEEEEEEECCSSCCCE---EEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred cCCccceeEEEecCCCCCEEE---EEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 98852 223345677776443 3448999999999999999999999988776543
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-33 Score=282.75 Aligned_cols=261 Identities=11% Similarity=0.031 Sum_probs=206.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
.-...|.+++|||||+++||++.|++|+ |.... ..+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~------~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~-- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA------KDINCNSKNLFHVKEFPLE-------FENKLDFELAQ-- 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC------SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc------ceecCCCccEEEEEECCCC-------CcceEEEEeCC--
Confidence 3557899999999999999999999999 64433 2347999999999999998 45555555543
Q ss_pred cEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc----ccEEEEEEeeCCCEEEEEEcCCe
Q 008005 350 ECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT----LRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 350 ~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~----~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
....+. .+...|.+++|+|+|..|++++.||.|++||..+ .+.. ..++. ..+.+++|+|||++|++|+.||+
T Consensus 76 -~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~-l~~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 76 -QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTN-LDSKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp -SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEE-CCCSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred -CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeee-ccCCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 222232 4478899999999999999999999999999654 3333 33221 25999999999999999999999
Q ss_pred EEEEECCCCee--------eE-----EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc--eeEEE-ecccccee
Q 008005 425 ILLLDREANFE--------RW-----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK--LVSRY-KGHKRARF 488 (581)
Q Consensus 425 i~i~d~~~~~~--------~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~ 488 (581)
|++||+.++.. .. ..|...|.+++|+|+| +++++.|+.|++||+.++.. ....+ .+|...+.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99999988741 22 2345799999999999 88889999999999988642 23455 36665554
Q ss_pred EEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEE--cCCCCcEEEEEECCCcEEEecCC
Q 008005 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW--NPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.+.+ + ++.|++++ ++.|++||+.+++......+|.+.|.+++| +|++ ..+++++.||+ ++|..+
T Consensus 231 svaF---s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKI---V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEE---E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred EEEE---E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence 4433 4 58889887 699999999988874444489999999999 9999 79999999999 888874
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=281.65 Aligned_cols=247 Identities=15% Similarity=0.200 Sum_probs=204.8
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-----------EEEEEecCC------------CeEEEEEEecCC
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----------CLHVYEKTG------------VGLISCGWFLDG 371 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 371 (581)
.|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999877 577888898 889999999998
Q ss_pred --CeEEEEeCCCcEEEEeCCCCeEE----------------------------------------eeccCccccEEEEEE
Q 008005 372 --GGIFAGMTDKSICLWDLDGRELE----------------------------------------SWKGQKTLRISDMAI 409 (581)
Q Consensus 372 --~~l~sg~~dg~i~vwd~~~~~~~----------------------------------------~~~~~~~~~i~~i~~ 409 (581)
..|++++.|+.|++||+..+... .+...|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 78999999999999998753331 223457778999999
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe--ee--------EEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCce--
Q 008005 410 TDDGKRIISICREAAILLLDREANF--ER--------WIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKL-- 476 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~-- 476 (581)
+|++++++++ .|+.|++||++... .. ...|...|.+++|+|++ ++|++++.|+.|++||+++. ..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-cccc
Confidence 9999999998 89999999999543 22 23678889999999998 99999999999999999987 43
Q ss_pred --eEEEeccccce---------eEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-CceEEEeccCCCC-------------
Q 008005 477 --VSRYKGHKRAR---------FVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-GELVLALAGHSGS------------- 531 (581)
Q Consensus 477 --~~~~~~~~~~~---------~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~------------- 531 (581)
...+..|.... ..+..+.++|++++|++++. +.|++||+.+ ++++..+.+|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 67777776410 02445555899999999999 9999999997 8888888888642
Q ss_pred --EEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 532 --VNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 532 --v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+..++|+|++ .+|++++.||.|++||+.+++..
T Consensus 343 ~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 343 FDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEE
T ss_pred ccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcce
Confidence 3349999999 69999999999999999987653
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=282.68 Aligned_cols=275 Identities=14% Similarity=0.282 Sum_probs=220.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe-cCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC---Cc---
Q 008005 279 QFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS---GE--- 350 (581)
Q Consensus 279 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~---~~--- 350 (581)
.|+|++..+++++ .|+.. + .....+ .+|.+.|++++|+| ++.+|++|+.||+|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-G---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-C---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS
T ss_pred hcCCccccccccc------ccccc-c---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc
Confidence 3778888887765 37754 2 345666 88999999999999 999999999999999999876 43
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC---CCeEEeecc----------C--ccccEEEEE--EeeCC
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD---GRELESWKG----------Q--KTLRISDMA--ITDDG 413 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~---~~~~~~~~~----------~--~~~~i~~i~--~~~~~ 413 (581)
....+ .|...|.+++|+|++..|++|+.||.|++||+. .+....... . +...+.++. +++++
T Consensus 104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 23333 488999999999999999999999999999994 222221111 1 334566666 55789
Q ss_pred CEEEEEEcCCeEEEEECCCCe--eeEEe--cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-cccccee
Q 008005 414 KRIISICREAAILLLDREANF--ERWIE--EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARF 488 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~--~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~ 488 (581)
..+++++.|+.|++||+++.. ..+.. |...|++++|+|++++|++++.|+.|++||++++ ..+..+. .|...+.
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceE
Confidence 999999999999999999877 33333 6789999999999999999999999999999986 7777765 5555544
Q ss_pred EEEee-ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--------------------------CCCCEEEEEEcCCC
Q 008005 489 VIRSC-FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--------------------------HSGSVNCVSWNPAN 541 (581)
Q Consensus 489 ~i~~~-~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------------------------h~~~v~~l~~~p~~ 541 (581)
.+.++ .+++++.+|++|+.||.|++||+.+++.+..+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 44333 4567899999999999999999999998877764 44568888998 56
Q ss_pred CcEEEEEECCCcEEEecCCccccccc
Q 008005 542 LHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+|++++.||.|++||+.+++....
T Consensus 341 -~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 341 -KILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp -EEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred -eEEEecCCCCeEEEEECCCcccceE
Confidence 6999999999999999998876543
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-31 Score=270.98 Aligned_cols=284 Identities=17% Similarity=0.222 Sum_probs=224.0
Q ss_pred eeccCCCCCceeeccCCCCccccccccee--ecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQ--ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~ 315 (581)
++....+..+.+|+.... ++.+ .+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.++ +....+.+
T Consensus 118 ~lAvgld~tV~lWd~~tg-------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~ 187 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG-------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTS 187 (420)
T ss_dssp EEEEEETTEEEEEETTTC-------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECC
T ss_pred EEEEEeCCEEEEEECCCC-------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeC
Confidence 344455677778864432 2333 44578899999999999999999999999999999876 56778899
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE-
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL- 393 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~- 393 (581)
|...|.+++|+ +.+|++|+.|+.+++||.... ..+..+..|...+..+.|+|++..+++++.|+.|++|+...+..
T Consensus 188 h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 188 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred CCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence 99999999885 679999999999999998864 55678889999999999999999999999999999999975432
Q ss_pred ---EeeccCccccEEEEEEeeCCC-EEEEE--EcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe--eCCc
Q 008005 394 ---ESWKGQKTLRISDMAITDDGK-RIISI--CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--INQE 464 (581)
Q Consensus 394 ---~~~~~~~~~~i~~i~~~~~~~-~l~~~--~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~ 464 (581)
......+...|.+++|+|++. .++++ +.|+.|++||+.++. .........+.++.|+|+++.+++++ .|+.
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE
Confidence 233445566899999999765 44443 479999999999988 55667778899999999999998876 6899
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
|++||+.+. +.+..+.+|...+. .+.++|+|.+|++|+.|++|+|||+....+......+...+....+
T Consensus 346 I~iwd~~~~-~~v~~l~gH~~~V~---~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 346 LVIWKYPTM-AKVAELKGHTSRVL---SLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEETTTC-CEEEEECCCSSCEE---EEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEECCCC-cEEEEEcCCCCCEE---EEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999988 88899999988744 4445999999999999999999999887776666655554443333
No 98
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.3e-32 Score=271.52 Aligned_cols=268 Identities=18% Similarity=0.286 Sum_probs=215.8
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecc-----cccCcEEEEEEcCC----CCEEEEEeCCCeEEEEEcccCCeee
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-----AHSDEVWFLQFSHD----GKYLASSSKDQSAIIWEVKEDGQVS 308 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~l~~s~~----g~~lasgs~dg~i~iwd~~~~~~~~ 308 (581)
++....+..+.+|+-.. .+.+..+. .|...|++++|+|+ +.+|++|+.||.|++||+.++ .
T Consensus 37 ~~~~~~~~~v~vw~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~ 106 (366)
T 3k26_A 37 VFATVGSNRVTLYECHS-------QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---Q 106 (366)
T ss_dssp EEEEEETTEEEEEEECG-------GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---C
T ss_pred EEEECCCCEEEEEEcCC-------CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---e
Confidence 44444455666775432 22233333 36688999999999 679999999999999999876 4
Q ss_pred EEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcEEEEE---ecCCCeEEEEEEecCCCeEEEEeCCCcEE
Q 008005 309 LKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSIC 384 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 384 (581)
....+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++..|++++.||.|+
T Consensus 107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 186 (366)
T 3k26_A 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186 (366)
T ss_dssp EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence 5567889999999999999 9999999999999999999999999888 67899999999999999999999999999
Q ss_pred EEeCCCCeEEeecc----------------------------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--
Q 008005 385 LWDLDGRELESWKG----------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANF-- 434 (581)
Q Consensus 385 vwd~~~~~~~~~~~----------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 434 (581)
+||++++....... .+...|.+++|+ ++++++++.|+.|++||+.+..
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~ 264 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD 264 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence 99998654322111 266789999998 7799999999999999987652
Q ss_pred --------------eeEEecCCceEEEEECCC--CCEEEEEeeCCcEEEEEecCCCc---eeEEEeccccceeEEEeeec
Q 008005 435 --------------ERWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDPK---LVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 435 --------------~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~ 495 (581)
.....+...|.+++|+|+ +++|++++.||.|++||+.+... ....+.+|..... +..+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 343 (366)
T 3k26_A 265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA-IRQTSF 343 (366)
T ss_dssp GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC-EEEEEE
T ss_pred ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc-eEEEEe
Confidence 334457778999999999 99999999999999999988632 3446666632222 444455
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCC
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
+|++++|++++.||.|++||+.+
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCeEEEEeCCCEEEEEEecC
Confidence 89999999999999999999753
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=300.71 Aligned_cols=251 Identities=15% Similarity=0.280 Sum_probs=208.8
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC--CCeEEEeeCCCcEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i~ 342 (581)
+.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.. ........+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 457889999999999999999999999999999999974 344677888999999999999988 99999999999999
Q ss_pred EEEcCCCc--EEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCe--EEeeccCccccEEEEEEee-----
Q 008005 343 RWDVNSGE--CLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITD----- 411 (581)
Q Consensus 343 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~i~~~~----- 411 (581)
+||+.+++ .+..+..|...|.+++|+|+ +..+++|+.||.|++||+++.. .......+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 67788889999999999999 9999999999999999997652 2233345566899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCCe------eeEEecCCceEEEEECCC---CCEEEEEeeCCcEEEEEecCCC
Q 008005 412 --------DGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 412 --------~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
++..+++++.||.|++||+++.. .....|...|.+++|+|+ ++++++++.||.|++||+.+..
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 58999999999999999998763 334467899999999999 8999999999999999998852
Q ss_pred c----eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 475 K----LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 475 ~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
. .......|... +..+.++|++.++++|+.||.|++|++.++
T Consensus 241 ~~~~~~~~~~~~~~~~---v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDV---LWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCCBCCBSSSSCCSSC---CCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CcceeEEeccCCCCCc---eEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 2 22222334444 334445899999999999999999998753
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-31 Score=276.67 Aligned_cols=266 Identities=11% Similarity=0.208 Sum_probs=211.3
Q ss_pred EecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcE--EEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEe
Q 008005 312 RLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd 387 (581)
...+|...|++|+|+| ++++||+|+.||+|+|||+.+++. ...+.+|...|++++|+| ++.+|++|+.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4456888999999999 567999999999999999987754 444568999999999998 688999999999999999
Q ss_pred CCCCeEEeeccCc--cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCC-EEEEEeeCC
Q 008005 388 LDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNK-YLLVNLINQ 463 (581)
Q Consensus 388 ~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~ 463 (581)
++++........+ ...+.+++|+|++++|++++.||.|++||++... ..+..|...|.+++|+|++. ++++++.|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 9987766555443 3357889999999999999999999999998766 45567889999999999876 677899999
Q ss_pred cEEEEEecCCCce--eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC------CEEEE
Q 008005 464 EIHLWSIESDPKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG------SVNCV 535 (581)
Q Consensus 464 ~i~iwd~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~v~~l 535 (581)
.|++||+++.... .....+|... +..+.++|++.+|++++.||.|++||+.+++....+..|.. .+...
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSC---EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred eeeEEecccccccceEEEeeecccc---ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 9999999875322 2223455555 55566699999999999999999999999988888776643 23455
Q ss_pred EEcCCCCcEEEEEE------------CCCcEEEecCCccccccccC------CCce-EEecCCCC
Q 008005 536 SWNPANLHMLASAS------------DDRTIRIWGLDQINMKHRDQ------SNGI-VHHCNGRI 581 (581)
Q Consensus 536 ~~~p~~~~~l~s~s------------~Dg~I~iW~~~~~~~~~~~~------~~~~-~~~~~G~~ 581 (581)
.|+|++ .++++++ .++.|++||..++++..... ...+ .|+|+|++
T Consensus 351 ~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 351 AWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp EECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred EEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 678877 4555553 34689999999988654321 2333 58999874
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=277.90 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=198.7
Q ss_pred ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
+..|.++|++++|+|++++|++++.|+.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446788999999999999999999999999999998 77788889999999999999999999999999999999987
Q ss_pred Ce---EEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeEEe-cCCceEEEEECCCCCEEEEEee
Q 008005 391 RE---LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIE-EEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 391 ~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+. .......+...|.+++|+|+++.|++++.|+.|++||+++.. ..... |...|.+++|+|++++|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 65 344444566799999999999999999999999999998874 23334 7899999999999999999999
Q ss_pred CCcEEEEEecCC-----------------CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce---
Q 008005 462 NQEIHLWSIESD-----------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL--- 521 (581)
Q Consensus 462 d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~--- 521 (581)
|+.|++||+... ...+..+ +|... +..+.++|++++|++++.||.|++||+.+++.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW---VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS---EEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce---EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999632 1334444 66655 44445589999999999999999999999987
Q ss_pred -EEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 522 -VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 522 -~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+..+.+|...|.+++|+|++ .+|++++.|+.+ +|+..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred eeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence 78889999999999999999 788888766655 66665
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=266.49 Aligned_cols=268 Identities=13% Similarity=0.161 Sum_probs=212.3
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEE-EeeC---CCcEEEEEcCCCcEEEEEe-cCCCeEEEEEEecC---CCeEEEEeCC
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLL-TCGQ---EEAIRRWDVNSGECLHVYE-KTGVGLISCGWFLD---GGGIFAGMTD 380 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~---dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~sg~~d 380 (581)
....+.+|...|.+++|+|++..++ +++. ||.|++||+.+++...... .|...|.+++|+|+ +..|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3455678999999999999986554 5555 8999999999988765443 68889999999998 6999999999
Q ss_pred CcEEEEeCCCCe-EEeeccCccccEEEEEE------eeCCCEEEEEEcCCeEEEEECCCCe---eeEEecC----CceEE
Q 008005 381 KSICLWDLDGRE-LESWKGQKTLRISDMAI------TDDGKRIISICREAAILLLDREANF---ERWIEEE----EVITS 446 (581)
Q Consensus 381 g~i~vwd~~~~~-~~~~~~~~~~~i~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~----~~i~~ 446 (581)
|.|++||+.+.. .......|...|.++.| +|+++.+++++.|+.|++||+++.. ..+..+. ..+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 999999998765 55555566778999954 6899999999999999999998865 2222223 37888
Q ss_pred EE----ECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC---CCcEEEEEeCCCcEEEEeCCCC
Q 008005 447 FS----LSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF---EQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 447 ~~----~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
++ |+|+++++++++.|+.|++||+++. .. .....+... +..+.++| ++.++++++.||.|++||+.++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~---v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-AL-RWETNIKNG---VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTT-EE-EEEEECSSC---EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccC-ce-eeecCCCCc---eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 88 7899999999999999999999986 43 333555555 33444477 8999999999999999999887
Q ss_pred ceEEEec-----cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc------------------------cccCC
Q 008005 520 ELVLALA-----GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK------------------------HRDQS 570 (581)
Q Consensus 520 ~~~~~~~-----~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~------------------------~~~~~ 570 (581)
+....+. +|...|++++|+|++..+|++++.||.|++||+..+... +....
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 324 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI 324 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence 6654444 899999999999999448999999999999999865432 22335
Q ss_pred CceEEecCCCC
Q 008005 571 NGIVHHCNGRI 581 (581)
Q Consensus 571 ~~~~~~~~G~~ 581 (581)
..+.|+|+|+.
T Consensus 325 ~~~~~s~~~~~ 335 (357)
T 3i2n_A 325 SSLDWSPDKRG 335 (357)
T ss_dssp EEEEECSSSTT
T ss_pred eEEEEcCCCCe
Confidence 67788888863
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6e-31 Score=261.52 Aligned_cols=252 Identities=17% Similarity=0.204 Sum_probs=213.1
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---EEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEE
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLW 386 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vw 386 (581)
....+|.+.|++++|+|++++|++++.||.|++||+.++. ....+..|...|.+++|+|+++ .|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 4456899999999999999999999999999999999887 3455668899999999999999 99999999999999
Q ss_pred eC-CCCeEEeeccC-ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC---------Ce-eeEEecCCceEEEEECCCCC
Q 008005 387 DL-DGRELESWKGQ-KTLRISDMAITDDGKRIISICREAAILLLDREA---------NF-ERWIEEEEVITSFSLSKDNK 454 (581)
Q Consensus 387 d~-~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---------~~-~~~~~~~~~i~~~~~sp~~~ 454 (581)
|+ .++....+... +...|.+++|+| ++.+++++.|+.|++||+++ .. .....+...+.+++|+|++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR- 162 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence 99 88777555441 566899999999 99999999999999999886 44 3334478899999999987
Q ss_pred EEEEEeeCCcEEEEEecC-CCcee-EEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCC------ceEEEe
Q 008005 455 YLLVNLINQEIHLWSIES-DPKLV-SRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTG------ELVLAL 525 (581)
Q Consensus 455 ~l~~~~~d~~i~iwd~~~-~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~------~~~~~~ 525 (581)
+++++.++.|++||+++ ..... .....+... +.++.++| ++.++++++.||.|++|++... +....+
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCc---eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 99999999999999988 53322 233344444 44555588 9999999999999999999887 778888
Q ss_pred ccCCC---------CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 526 AGHSG---------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 526 ~~h~~---------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..|.. .|++++|+|++ .+|++++.||.|++||+.+++......
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhh
Confidence 88865 99999999999 699999999999999999888665443
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.1e-30 Score=264.52 Aligned_cols=289 Identities=10% Similarity=0.071 Sum_probs=235.5
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEE--EecCCCCCEEEEEeCCCCCeEEEeeCCCcE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH--RLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~--~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
.+..+..+ ..+.+++|+|++.++++++.++.|++||+.++....... .+.+|...|.+++|+|++.++++++.|+.|
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred EEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 44445544 345699999988888888889999999998764331111 456899999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
++||+.+++.+..+..+...+.+++|+|+++.+++++ .|+.|++||++++........+. .+.+++|+|+++.+++++
T Consensus 194 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~ 272 (433)
T 3bws_A 194 HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQ 272 (433)
T ss_dssp EEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEE
T ss_pred EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEE
Confidence 9999999999999998889999999999999886555 79999999998887766555543 699999999999999988
Q ss_pred --------cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEE-EEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008005 421 --------REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYL-LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 421 --------~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
.|+.|++||+.++. .....+...+.+++|+|+++.+ ++++.++.|++||+.++ +....+.. ... +
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~---~ 347 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIPV-FDK---P 347 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSS---E
T ss_pred CCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEecC-CCC---C
Confidence 48899999999877 4445566688999999999865 55578999999999976 66666653 333 3
Q ss_pred EeeecCCCCcEEEEEeC---------------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE-CCCcE
Q 008005 491 RSCFGGFEQAFIASGSE---------------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS-DDRTI 554 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I 554 (581)
..+.++|+++++++++. ||.|++||..+++.+..+.. ...+.+++|+|++ .+|++++ .|+.|
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~d~~i 425 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN-RYLVISDFLDHQI 425 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS-CEEEEEETTTTEE
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC-CEEEEEECCCCeE
Confidence 34445899998888876 57999999999999988876 4579999999999 5777766 59999
Q ss_pred EEecCCc
Q 008005 555 RIWGLDQ 561 (581)
Q Consensus 555 ~iW~~~~ 561 (581)
++|+++.
T Consensus 426 ~v~~~~~ 432 (433)
T 3bws_A 426 RVYRRDG 432 (433)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 9999864
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-30 Score=260.41 Aligned_cols=281 Identities=11% Similarity=0.076 Sum_probs=209.5
Q ss_pred cceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcE
Q 008005 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAI 341 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i 341 (581)
+++..+.+|.+.|++++|+|||++||+|+.++ ++||++.+. ....... ...+..+++.++++.+ ++++.|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEE
Confidence 34556788999999999999999999998775 789998754 2222222 2247888899888877 567788999
Q ss_pred EEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEeeccCccccEEEEEEeeCCCEEEE--
Q 008005 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDGKRIIS-- 418 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~-- 418 (581)
++||+.+++++..+. +...|.++.|+++. ++++ .|+.|++||+.+. +....... +...+++++ ..+++
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~s 154 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSN 154 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEE
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeC
Confidence 999999999998886 55689999998753 4443 4789999999876 33222211 344556666 56666
Q ss_pred EEcCCeEEEEECCCCe------------------eeEEecCCceEEEEECCCCCEEEEEeeCCc-EEEEEecCCCceeEE
Q 008005 419 ICREAAILLLDREANF------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSR 479 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~ 479 (581)
++.+|.|++||+.++. ..+..|...|.+++|+|++++|++++.|++ |++||++++ +.+..
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~ 233 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVRE 233 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEE
Confidence 5789999999998743 445678999999999999999999999998 999999987 77777
Q ss_pred Ee-c-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce--EEEec---------------------cCCCCEEE
Q 008005 480 YK-G-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL--VLALA---------------------GHSGSVNC 534 (581)
Q Consensus 480 ~~-~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~---------------------~h~~~v~~ 534 (581)
+. + |... +..+.++|++++|++++.|+.|++||+..+.. ...+. .+......
T Consensus 234 ~~~g~h~~~---v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 234 FRRGLDRAD---VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EECTTCCSC---EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEcCCCCCc---EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 77 5 7766 44455599999999999999999999876531 11111 11223467
Q ss_pred EEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 535 VSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 535 l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
++|++++ ..|++++.||.+++|++..+.
T Consensus 311 ~a~~~d~-~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 311 IAWISES-SLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEEEEEET
T ss_pred EEEeCCC-CEEEEEeCCCeEEEEEEEcCC
Confidence 8999999 799999999999999997655
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.2e-31 Score=268.51 Aligned_cols=273 Identities=18% Similarity=0.246 Sum_probs=221.7
Q ss_pred cCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCee----eEEEEecC
Q 008005 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV----SLKHRLSG 315 (581)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~----~~~~~~~~ 315 (581)
...++.+.+|.-..... ....+..+.+|.+.|++++|+| ++.+|++|+.||+|+||++.++... .....+.+
T Consensus 53 ~~~~g~i~v~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp CSSSCCEEEEETTCCEE---CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EcCCCEEEEEECccCCC---CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 45667788886433221 1234667889999999999999 9999999999999999999865321 34567889
Q ss_pred CCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEE--ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008005 316 HRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVY--EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 316 h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 392 (581)
|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++..|++++.||.|++||++++.
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 99999999999998 69999999999999999999999999 7899999999999999999999999999999999877
Q ss_pred EEeec-cCccc-cEEEEEEeeCCCEEEEE---EcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEe-eC
Q 008005 393 LESWK-GQKTL-RISDMAITDDGKRIISI---CREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNL-IN 462 (581)
Q Consensus 393 ~~~~~-~~~~~-~i~~i~~~~~~~~l~~~---~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~-~d 462 (581)
..... ..+.. .+.++.|+|++.+++++ +.|+.|++||+++.. .....+...+.+++|+|++++|++++ .|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 66554 44443 48999999999999998 789999999998865 22335677899999999999997655 69
Q ss_pred CcEEEEEecCCCceeEEEeccc--cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008005 463 QEIHLWSIESDPKLVSRYKGHK--RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
+.|++||+.+....+..+..+. .. +..+.++|++.++++ .++.+++|++.++..
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~---v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKES---QRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSC---CSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CeEEEEEecCCCcceEeecccccCCc---ccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9999999998744355555544 33 333344888888764 566999999987654
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.4e-30 Score=259.47 Aligned_cols=269 Identities=15% Similarity=0.230 Sum_probs=218.8
Q ss_pred eEEEEecCCCCCEEEEEeCCC---CCeEEEeeCCCcEEEEEcCC-CcEE-EEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008005 308 SLKHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRWDVNS-GECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~---~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
.....+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 456678999999999999998 59999999999999999997 5555 778899999999999999999999999999
Q ss_pred EEEEeCCCCeEEeeccCccccEEEEEE--eeCCCEEEEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEE
Q 008005 383 ICLWDLDGRELESWKGQKTLRISDMAI--TDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 383 i~vwd~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
|++||++++....... +...|.+++| +++++.+++++.|+.|++||++++. .........+.++.+. ...++++
T Consensus 110 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 186 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVA 186 (368)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEE
T ss_pred EEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEE
Confidence 9999999888776544 5568999999 8999999999999999999998877 4445555667777665 4588899
Q ss_pred eeCCcEEEEEecCCCceeEEEecccc-ceeEEEeeecCC--CCcEEEEEeCCCcEEEEeCCCC---ceEEEeccCCC---
Q 008005 460 LINQEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFGGF--EQAFIASGSEDSQVYIWHRYTG---ELVLALAGHSG--- 530 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~--- 530 (581)
+.++.+.+|++............... ....+.... .. ....+++++.||.|++||+... ..+..+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 99999999999887554444433222 222232222 22 2234999999999999999887 56777888876
Q ss_pred ---------CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceEEecCCCC
Q 008005 531 ---------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGRI 581 (581)
Q Consensus 531 ---------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~~ 581 (581)
.|++++|+|++ .+|++++.||.|++||+.+++.... .....+.|+|+|++
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329 (368)
T ss_dssp --CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSC
T ss_pred cccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCe
Confidence 79999999999 7999999999999999998876543 33567889999864
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-31 Score=290.43 Aligned_cols=249 Identities=14% Similarity=0.242 Sum_probs=212.7
Q ss_pred EEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC--CCcEEEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEE
Q 008005 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLW 386 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~vw 386 (581)
..+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+..|...|.+++|+++ ++.|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998 55778888999999999999988 8999999999999999
Q ss_pred eCCCCe--EEeeccCccccEEEEEEeeC--CCEEEEEEcCCeEEEEECCCCe----eeEEecCCceEEEEECC-------
Q 008005 387 DLDGRE--LESWKGQKTLRISDMAITDD--GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSK------- 451 (581)
Q Consensus 387 d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp------- 451 (581)
|+.++. .......+...|.+++|+|+ ++.+++++.||.|++||+++.. .....+...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 998875 44455566779999999999 9999999999999999998873 45567889999999999
Q ss_pred ------CCCEEEEEeeCCcEEEEEecCCC---ceeEEEeccccceeEEEeeecCCC---CcEEEEEeCCCcEEEEeCCCC
Q 008005 452 ------DNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFE---QAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 452 ------~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~sgs~dg~I~iwd~~~~ 519 (581)
++.++++++.||.|++||+++.. .....+.+|...+ .++.++|+ +.++++|+.||.|++||+.++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---EEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---EEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998764 3445667777764 34445888 899999999999999999886
Q ss_pred c-----eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 520 E-----LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 520 ~-----~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+ .......|.+.|++++|+|++ .++++++.||.|++|++....
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence 4 334445688999999999999 699999999999999998543
No 109
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=5.9e-30 Score=260.65 Aligned_cols=314 Identities=16% Similarity=0.243 Sum_probs=212.0
Q ss_pred ceeccCCCCCceeeccCCCCccccc-ccc-----eeecccccCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeE
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIP-SQT-----LQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSL 309 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-----~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~ 309 (581)
.++....++.+.+|+.......... ... .....+|...|++++|+| ++.+|++++.||.|++||+.++ ..
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~ 134 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---QT 134 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---EE
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---cc
Confidence 3455566777888865433221110 000 111246999999999999 7789999999999999999875 33
Q ss_pred EEEecCCCCCEEEEEeCCC---CCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCCcEEE
Q 008005 310 KHRLSGHRKPVFTVSWSPN---DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICL 385 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~v 385 (581)
...+. +...+.++.|+|. +.++++++.||.|++||+.+++.+..+..|...|.+++|+|++.. +++|+.||.|++
T Consensus 135 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i 213 (408)
T 4a11_B 135 ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213 (408)
T ss_dssp EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEE
Confidence 33333 7788999999984 459999999999999999999999999999999999999999985 889999999999
Q ss_pred EeCCCCe--EEee--------------ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE-------ecCC
Q 008005 386 WDLDGRE--LESW--------------KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-------EEEE 442 (581)
Q Consensus 386 wd~~~~~--~~~~--------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~ 442 (581)
||++... .... ...+...|.+++|+|+++++++++.|+.|++||+.++..... ....
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 293 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSS
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccc
Confidence 9997543 1111 134566899999999999999999999999999998762211 1112
Q ss_pred ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008005 443 VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
.+........+..+++++.++.|++||+.++ ..+..+.+|...+. .+.++|++.+|++|+.||.|++||+.+++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~---~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVD---CCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEE---EEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEE---EEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 2222223334566777788999999999987 88888998887744 4445899999999999999999999999887
Q ss_pred EEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 523 LALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 523 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.....+.. ...+.|.....+.+++.|+.+++|+...
T Consensus 370 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 370 PDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------------------------
T ss_pred CCCCceEe---ccccccccceeecccCccCceeecCCcc
Confidence 66554332 2334444435677888999999998764
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=3.9e-29 Score=253.56 Aligned_cols=271 Identities=8% Similarity=0.090 Sum_probs=221.8
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCCcEEEEEecCCCeEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 363 (581)
.++++++.|+.|++||+.++ +....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence 46788999999999999876 4555666664 58999999999977 677789999999999999988887666 899
Q ss_pred EEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEE-EEEEcCCeEEEEECCCCe-eeEEec
Q 008005 364 SCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI-ISICREAAILLLDREANF-ERWIEE 440 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~ 440 (581)
+++|+|+++++++++ .++.|++||+.+++.......+. .+.+++|+|+++.+ ++++.++.|++||+.++. ......
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 999999999886554 67999999999887766655544 78999999999988 677779999999999877 444555
Q ss_pred CCceEEEEECCCCCEE-EEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEe---CCCcEEEEeC
Q 008005 441 EEVITSFSLSKDNKYL-LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS---EDSQVYIWHR 516 (581)
Q Consensus 441 ~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs---~dg~I~iwd~ 516 (581)
...+.+++|+|+++++ ++++.++.|++||+.+. .....+..+. . +..+.++|+++++++++ .++.|++||+
T Consensus 157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-~---~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEA-A---PSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSS-E---EEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCC-C---ccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 6778999999999988 45667899999999887 5555555432 2 33445589999998888 6899999999
Q ss_pred CCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 517 YTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 517 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.++++...
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 9999998888765 5799999999954447888999999999998876543
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.7e-28 Score=248.73 Aligned_cols=322 Identities=12% Similarity=0.115 Sum_probs=245.1
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCeeeEEEEecCC
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
++....+..+.+|+... .+.+..+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.++ +....+..+
T Consensus 5 ~vs~~~d~~v~v~d~~~-------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~ 73 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS-------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAG 73 (391)
T ss_dssp EEEETTTTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECS
T ss_pred EEEcCCCCEEEEEECCC-------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECC
Confidence 34455667788886432 34566677665 48999999999976 67779999999999866 344555545
Q ss_pred CCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeE-EEEeCCCcEEEEeCCCCeEE
Q 008005 317 RKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELE 394 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~ 394 (581)
. .+.+++|+|++++|+++ +.++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++..
T Consensus 74 ~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred C-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 4 89999999999987654 467999999999999888877554 67999999999987 67778999999999888776
Q ss_pred eeccCccccEEEEEEeeCCCEE-EEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe---eCCcEEEEE
Q 008005 395 SWKGQKTLRISDMAITDDGKRI-ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL---INQEIHLWS 469 (581)
Q Consensus 395 ~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd 469 (581)
.....+. .+.+++|+|+++.+ ++++.++.|++||++++. .....+...+.+++|+|+++++++++ .++.|++||
T Consensus 152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 6555443 67999999999988 566788999999999887 55566778899999999999999988 589999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEE-EEEeCCCcEEEEeCCCCceEEEeccCCCCEE---EEEEcCCC----
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI-ASGSEDSQVYIWHRYTGELVLALAGHSGSVN---CVSWNPAN---- 541 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~---~l~~~p~~---- 541 (581)
+.++ +.+..+..+.. +..+.++|+++++ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 231 ~~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
T 1l0q_A 231 TGTN-KITARIPVGPD----PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYP 305 (391)
T ss_dssp TTTT-EEEEEEECCSS----EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCC
T ss_pred CCCC-eEEEEEecCCC----ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccc
Confidence 9887 66777776553 2334448899877 6778899999999999999988877655421 12222211
Q ss_pred -----------------CcEEEEEECCCcEEEecCCccccccccCCCceEEecCC
Q 008005 542 -----------------LHMLASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNG 579 (581)
Q Consensus 542 -----------------~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G 579 (581)
+..+...+.|..+++|++.++..... ......++++|
T Consensus 306 ~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~-~~~~~~~~~~g 359 (391)
T 1l0q_A 306 SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKK-QNPTHTYSETG 359 (391)
T ss_dssp BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECS-SSCEECCSSCE
T ss_pred ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCc-CCCeEEeCCCc
Confidence 12466667789999999988765332 23334455554
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-31 Score=261.42 Aligned_cols=267 Identities=9% Similarity=0.021 Sum_probs=207.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC---------CC
Q 008005 279 QFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---------SG 349 (581)
Q Consensus 279 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~---------~~ 349 (581)
.+.+++.+|++|+.||+|++||+.++.... .+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~---~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT---TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE---EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE---EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 455688899999999999999998775433 232 456788889987 9999999999999655 55
Q ss_pred cEEEEEe-cCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCCCeEEeec-cCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 350 ECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 350 ~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
+.+..+. .|...|.+++|+| +++++++++.||.|++||++++...... ..+...+.+++|+|++.++++|+.|+.|
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 5555554 5667899999999 9999999999999999999887765444 4445579999999999999999999999
Q ss_pred EEEECCCCee---eEEe-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec---cccceeEEEeeecCCC
Q 008005 426 LLLDREANFE---RWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---HKRARFVIRSCFGGFE 498 (581)
Q Consensus 426 ~i~d~~~~~~---~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 498 (581)
++||++++.. .+.. |...|++++|+|++.+|++++ ++.|++||+++. ..+..+.. +...... .++.++|+
T Consensus 195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 271 (343)
T 3lrv_A 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGT-VTYDIDDS 271 (343)
T ss_dssp EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CC-EEEEECTT
T ss_pred EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-Ccceeecccccccccccc-eEEEECCC
Confidence 9999998772 3445 789999999999999999999 559999999987 33333332 2222111 23455999
Q ss_pred CcEEEEEeC-CCcEEEEeCCCCceEEEeccCCCCEEEEEEcC---CCCcEEEEEECCCcEEEecCCc
Q 008005 499 QAFIASGSE-DSQVYIWHRYTGELVLALAGHSGSVNCVSWNP---ANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 499 ~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+++|++++. |+.|++|++.+....... .++..++|.| +. ..+++++.||.+.++-...
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADF-TDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCC-CEEEEEEETTEEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccc-ceeEEEecCCceEEEEecC
Confidence 999999998 999999998765443332 5678888988 77 6899999999999886543
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.7e-31 Score=267.73 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=182.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee--eEEEEecCCCCCEEEEEeCC--------CCCeEEEeeCC
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSP--------NDHQLLTCGQE 338 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~sp--------~~~~l~s~~~d 338 (581)
..|...+....+++++.+||+|+.|++|+|||...+... .....+.+|.+.|++++|+| |+++||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 345555555666677889999999999999999865332 23345789999999999998 78999999999
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
++|+|||+.++.++..+..|...+.+++|+|++. +|++|+.|++|++||++++........+........++++...+.
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999999988888889999999999999875 799999999999999987654332222111111111111100000
Q ss_pred EEEcCCeEEEEECCCCeeeEEecCCceEEEEEC-CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccce---------
Q 008005 418 SICREAAILLLDREANFERWIEEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR--------- 487 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------- 487 (581)
.......+...+.++.|+ |+++.+++++.|+.+++||+... .....+..+....
T Consensus 246 ---------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 246 ---------------NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp ---------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSE
T ss_pred ---------------eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEcccc
Confidence 001223456677888876 78999999999999999998765 3333333332211
Q ss_pred -------eEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 488 -------FVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 488 -------~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+.+..+++++ ++.++++|+.||.|++||+.+++....+.+|..+|++++|+|+| ++||++++|| +.+|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEE
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEE
Confidence 1122233333 45577889999999999999999998888999999999999999 7999998776 555544
No 114
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5.1e-30 Score=257.22 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=193.2
Q ss_pred eecccccCcEEEEEEcCCCCEEEEE-----------eCCCeEEEEEcccCCe-eeEEEEe-----cCCCCCEEEEEeCCC
Q 008005 266 QILEAHSDEVWFLQFSHDGKYLASS-----------SKDQSAIIWEVKEDGQ-VSLKHRL-----SGHRKPVFTVSWSPN 328 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasg-----------s~dg~i~iwd~~~~~~-~~~~~~~-----~~h~~~V~~l~~sp~ 328 (581)
..|.+|.+.|.+++++ +..+++| +.|+++++|++..... ....... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3578899999998775 4466655 4578899999875432 2222221 234566999999999
Q ss_pred CCeEEE--eeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-CCeEE-eeccCccccE
Q 008005 329 DHQLLT--CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELE-SWKGQKTLRI 404 (581)
Q Consensus 329 ~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~-~~~~~~~~~i 404 (581)
|+++++ ++.|++|+|||+.+++++..+. |...|.+++|+||++++++++.++ +.+|+.. +.... .....+...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCE
Confidence 999765 4478999999999999988885 667899999999999999998665 5555554 44433 3344566689
Q ss_pred EEEEEeeCCCEEEEEEcCC----eEEEEECCCCe------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008005 405 SDMAITDDGKRIISICREA----AILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
.+++|+|+++.+++++.++ .++.|+..... .....+...|++++|+|+|++|++|+.|+.|+|||+.++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~- 301 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL- 301 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-
Confidence 9999999999999999887 68889987665 234467788999999999999999999999999999987
Q ss_pred ceeEEE-eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 475 KLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 475 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+++..+ .+|...+ ..+.|+|++++|++||.|++|+|||+...
T Consensus 302 ~~~~~~~~gH~~~V---~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 SMSKIFKQAHSFAI---TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSSSSCE---EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cEEEEecCcccCCE---EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 666664 7888874 44555999999999999999999998643
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-31 Score=268.40 Aligned_cols=244 Identities=11% Similarity=0.159 Sum_probs=203.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC-----CEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK-----PVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
+|.+.|++++|||+|++||+++.||.|+|||... +...+. |.. .|.+++|||||++|++|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5689999999999999999999999999999642 455566 665 49999999999999999999999999
Q ss_pred EcCCCc-------EEEEE----ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE----eeccCccccEEEEEE
Q 008005 345 DVNSGE-------CLHVY----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE----SWKGQKTLRISDMAI 409 (581)
Q Consensus 345 d~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~i~~ 409 (581)
|+.++. .+.++ .+|...|.+++|+||+ +++++.|+.|++||+.++... .+...|...|.+++|
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 999885 35666 5667899999999998 889999999999999876632 233456668999999
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCee-eEE-ecCCceEEEEE--CCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 410 TDDGKRIISICREAAILLLDREANFE-RWI-EEEEVITSFSL--SKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~-~~~~~i~~~~~--sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
+ ++.+++++ ++.|++||..++.. ... .|...+..++| +|++..+++++.+|+ ++|....
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~------------- 297 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE------------- 297 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------------
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------------
Confidence 9 68888887 69999999998884 444 78899999999 999999999999999 9999761
Q ss_pred ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
+. ++|++..+++. |+++++|+...+. +..+.+ ...|++++|+|+| ..+|+++.
T Consensus 298 ----~~---~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG-~~lA~~~~ 350 (588)
T 2j04_A 298 ----LH---VTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDG-YSIAIVYD 350 (588)
T ss_dssp ----EE---EECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTS-SEEEEEEE
T ss_pred ----EE---ECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCC-CEEEEEEe
Confidence 11 27788777764 9999999975444 445554 6779999999999 78998874
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.7e-29 Score=245.06 Aligned_cols=273 Identities=17% Similarity=0.253 Sum_probs=222.5
Q ss_pred HHccccceeccCCCCCceeeccCCCCcccccccceee--cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeee
Q 008005 231 DVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQI--LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS 308 (581)
Q Consensus 231 ~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~ 308 (581)
.|.+.. ++....+..+.+|+... .++++. +.+|...|++++|+|++++||+|+.||+|++|++.++ +
T Consensus 32 ~WS~~~-~lAvg~D~tV~iWd~~t-------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~ 100 (318)
T 4ggc_A 32 DWSSGN-VLAVALDNSVYLWSASS-------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---K 100 (318)
T ss_dssp EECTTS-EEEEEETTEEEEEETTT-------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---E
T ss_pred EECCCC-EEEEEeCCEEEEEECCC-------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---e
Confidence 454443 44455677788886432 234444 4578899999999999999999999999999999876 5
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
....+.+|...+.++.+ ++..+++++.++.+++|+..++ ..+..+..|...+..+.+.+++.++++++.||.|++||
T Consensus 101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 66788899998887665 4679999999999999998875 45677889999999999999999999999999999999
Q ss_pred CCCCeE----EeeccCccccEEEEEEeeCCCEE---EEEEcCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEE
Q 008005 388 LDGREL----ESWKGQKTLRISDMAITDDGKRI---ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 388 ~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l---~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
+++++. ......+...|.++++++++..+ ++++.++.|++||..... .....+...+..+.|+|++..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 258 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258 (318)
T ss_dssp SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEE
Confidence 976432 22333445689999999977644 355678999999998877 5666788889999999999998876
Q ss_pred e--eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc
Q 008005 460 L--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520 (581)
Q Consensus 460 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~ 520 (581)
+ .|+.|++||+.++ +.+..+.+|...+. ++.++|++++|++|+.||+|+|||+.+..
T Consensus 259 sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~---~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 259 HGFAQNQLVIWKYPTM-AKVAELKGHTSRVL---SLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ECTTTCCEEEEETTTC-CEEEEECCCSSCEE---EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEcCCCEEEEEECCCC-cEEEEEcCCCCCEE---EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 5 6899999999988 88899999988744 44458999999999999999999987653
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.2e-29 Score=260.73 Aligned_cols=251 Identities=18% Similarity=0.310 Sum_probs=208.8
Q ss_pred eecccccCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccC-------CeeeEEEEecCCCCCEEEEEeCCCCC-eEEEee
Q 008005 266 QILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKED-------GQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCG 336 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~ 336 (581)
....+|.+.|++++|+|+ +.+||+++.||.|++|++... ........+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455689999999999997 779999999999999999762 22355677889999999999999988 999999
Q ss_pred CCCcEEEEEcCCCcE-------EEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCC---eEEeeccCccccEE
Q 008005 337 QEEAIRRWDVNSGEC-------LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRIS 405 (581)
Q Consensus 337 ~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~~~~i~ 405 (581)
.||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.||.|++||++.. ........+...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987422 456678899999999999 6788999999999999999865 33333345667899
Q ss_pred EEEEeeCCC-EEEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCC-EEEEEeeCCcEEEEEecCCC------
Q 008005 406 DMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDP------ 474 (581)
Q Consensus 406 ~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~------ 474 (581)
+++|+|++. .+++++.||.|++||+++.. ..+..|...|.+++|+|+++ +|++++.|+.|++||+....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999987 68899999999999998743 45556899999999999985 68899999999999998732
Q ss_pred -------ceeEEEeccccceeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCC
Q 008005 475 -------KLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 475 -------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~ 519 (581)
..+..+.+|... +..+.++|++. ++++++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSC---EEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCC---ceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 455666677766 34444588888 9999999999999998653
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2e-29 Score=259.64 Aligned_cols=274 Identities=18% Similarity=0.331 Sum_probs=213.6
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
+....++.+.+|+.. ..+....+.+|.+.|++++| ++++|++|+.||+|++||+.++ .....+.+|..
T Consensus 147 ~~g~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~ 214 (435)
T 1p22_A 147 VSGLRDNTIKIWDKN-------TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCE 214 (435)
T ss_dssp EEEESSSCEEEEESS-------SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCS
T ss_pred EEEeCCCeEEEEeCC-------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCC
Confidence 344555566666532 34567888999999999999 7889999999999999999876 45677889999
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE---EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 395 (581)
.|.+++|++ .++++|+.||.|++||+.++... ..+..|...|.++.| +++.+++|+.||.|++||++++....
T Consensus 215 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~ 290 (435)
T 1p22_A 215 AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290 (435)
T ss_dssp CEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence 999999974 59999999999999999987655 667789999999998 68899999999999999999887777
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 396 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
....+...+.++++ +++.+++++.||.|++||++++. ..+..|...|.+++| ++.+|++++.||.|++||+.+.
T Consensus 291 ~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 77777778999988 47899999999999999999877 445568889999999 7899999999999999999764
Q ss_pred Cc--------eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc
Q 008005 474 PK--------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 474 ~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~ 538 (581)
.. .+..+.+|...+..+.. ++.+|++|+.||.|++||+.+........ ...+..++.|.
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE-----CSSCEEECCSSSEEEEEC-----------------------
T ss_pred CCccccccchheeeccCCCCCeEEEEe-----CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 21 67788888887655433 67889999999999999998776554433 23344555554
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.5e-28 Score=244.10 Aligned_cols=248 Identities=14% Similarity=0.122 Sum_probs=185.4
Q ss_pred EEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeE-EE
Q 008005 298 IWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGI-FA 376 (581)
Q Consensus 298 iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s 376 (581)
||++.+. ..+.....|...|++++|+||+++|++|+.++ +++||+.+++.......+ .+..+.+.++++.+ ++
T Consensus 3 i~s~~~~---~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITR---NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEE
T ss_pred ccccccc---CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEE
Confidence 4454433 34456688999999999999999999988775 789999988766554433 46778888888877 56
Q ss_pred EeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC-e-eeEEecCCceEEEEECCCCC
Q 008005 377 GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN-F-ERWIEEEEVITSFSLSKDNK 454 (581)
Q Consensus 377 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~i~~~~~sp~~~ 454 (581)
++.|+.|++||+.+++.......+ ..|.+++++++. +++ ..++.|++||+.+. . ...... ....+++++ .
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~ 148 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKVD-APVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--G 148 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEECS-SCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--T
T ss_pred ECCccEEEEEECCCCcEEEEEECC-CceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc--CCceEEEEc--c
Confidence 778899999999888776655543 489999998764 333 35889999999987 3 211222 445566777 6
Q ss_pred EEEE--EeeCCcEEEEEecCCC--------------ce-eEEEeccccceeEEEeeecCCCCcEEEEEeCCCc-EEEEeC
Q 008005 455 YLLV--NLINQEIHLWSIESDP--------------KL-VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ-VYIWHR 516 (581)
Q Consensus 455 ~l~~--~~~d~~i~iwd~~~~~--------------~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~-I~iwd~ 516 (581)
++++ ++.+|.|++||+.+.. .+ +..+.+|...+ .++.++|++++|++|+.||+ |++||+
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI---KMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE---EEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce---EEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 6666 4789999999998753 12 67788898874 44455999999999999998 999999
Q ss_pred CCCceEEEec-c-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 517 YTGELVLALA-G-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 517 ~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.+++++..+. + |.+.|++++|+|++ .+|++++.|++|++||+....
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCS
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCC
Confidence 9999999998 5 99999999999999 799999999999999998654
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.4e-28 Score=249.01 Aligned_cols=235 Identities=15% Similarity=0.189 Sum_probs=196.3
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---EEEEEecC------------------------------------
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKT------------------------------------ 358 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~------------------------------------ 358 (581)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57899999999998 66555432
Q ss_pred ------------------CCeEEEEEEecCCCeE-EEEeCCCcEEEEeCC--CCeEEeecc--CccccEEEEEEeeCCCE
Q 008005 359 ------------------GVGLISCGWFLDGGGI-FAGMTDKSICLWDLD--GRELESWKG--QKTLRISDMAITDDGKR 415 (581)
Q Consensus 359 ------------------~~~v~~~~~~~~~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~--~~~~~i~~i~~~~~~~~ 415 (581)
...|.+++|+|++++| ++++.||.|++||+. ++....... .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 2269999999999996 889999999999998 655444432 34468999999999999
Q ss_pred EEEEEcCCeEEEEECCCCee------eEEecCCceEEEEECCC---CCEEEEEeeCCcEEEEEecCCCceeEE-Eecccc
Q 008005 416 IISICREAAILLLDREANFE------RWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKR 485 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~ 485 (581)
|++++.++.|++|++.+... .+..|...|.+++|+|+ +++|++++.|+.|++||+.++ ..+.. +.+|..
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~h~~ 242 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKWLFGHKH 242 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEECCCCSS
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeeeecCCCC
Confidence 99999999999999987652 55678899999999999 999999999999999999987 44544 557877
Q ss_pred ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-------------------------CCCEEEEEEcCC
Q 008005 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-------------------------SGSVNCVSWNPA 540 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~v~~l~~~p~ 540 (581)
.+.. +.++ ++.+|++++.|+.|++||+.+++++..+..+ ...|.+++|+|+
T Consensus 243 ~v~~---~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 243 FVSS---ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CEEE---EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred ceEE---EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 6443 3346 9999999999999999999999988887632 357999999999
Q ss_pred CCcEEEEEE-CCCcEEEecC
Q 008005 541 NLHMLASAS-DDRTIRIWGL 559 (581)
Q Consensus 541 ~~~~l~s~s-~Dg~I~iW~~ 559 (581)
+ .+|++++ .|+.|++|++
T Consensus 319 ~-~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 L-PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp S-SEEEEEETTCSEEEEEEE
T ss_pred C-CEEEEEECCCCeEEEEEe
Confidence 9 6888888 8999999999
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.9e-27 Score=227.48 Aligned_cols=275 Identities=9% Similarity=0.088 Sum_probs=189.1
Q ss_pred cEEEEEEcCCCC---EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--cEEEEEc--
Q 008005 274 EVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDV-- 346 (581)
Q Consensus 274 ~V~~l~~s~~g~---~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--~i~vwd~-- 346 (581)
.+.++.|-..|- .+++++ ...|++|+..+..+++..+++.+|..+|..+.+.||..-|++....+ .-.++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 355666655443 566666 56799999998888899999999999999999999654443332110 0111111
Q ss_pred CCC----cEEEEEecCCCeEEEEEEecCCCeEEEEe--CCCcEEEEeC-CCCeEEeeccCccccEEEEEEee---CCCEE
Q 008005 347 NSG----ECLHVYEKTGVGLISCGWFLDGGGIFAGM--TDKSICLWDL-DGRELESWKGQKTLRISDMAITD---DGKRI 416 (581)
Q Consensus 347 ~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--~dg~i~vwd~-~~~~~~~~~~~~~~~i~~i~~~~---~~~~l 416 (581)
... .......++...+..+ ++++.+.+++ .|+.|++|++ ..++.......+...++.++|++ ++..|
T Consensus 120 spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~L 196 (356)
T 2w18_A 120 SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEAL 196 (356)
T ss_dssp ------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEE
T ss_pred CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceE
Confidence 111 1111112333334333 4544444433 4999999999 44655555556666889999999 78999
Q ss_pred EEEEcCCeEEEEECCCCe-eeEE-ec---CCceEEEEECCCCCEE------------EEEeeCCcEEEEEecCCCceeEE
Q 008005 417 ISICREAAILLLDREANF-ERWI-EE---EEVITSFSLSKDNKYL------------LVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~-~~~~-~~---~~~i~~~~~sp~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
++++.|++|++||+++++ ...+ .+ ...+.+++|+|++.++ ++|+.|++|++||..++ +.+..
T Consensus 197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v 275 (356)
T 2w18_A 197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGV 275 (356)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-EEEEE
T ss_pred EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-EEEEE
Confidence 999999999999999987 3333 22 2357778999999987 45677899999999887 55544
Q ss_pred E-----eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEE-EEEEcCCCCcEEEEEECCCc
Q 008005 480 Y-----KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVN-CVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 480 ~-----~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~Dg~ 553 (581)
+ .+|... .+.. +.++.++++|+.|++|+|||+.+++++.++.+|...+. +++|+|+| .+|+||+.|++
T Consensus 276 ~~~~~p~Gh~~~--~lsg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~T 349 (356)
T 2w18_A 276 MLYCLPPGQAGR--FLEG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGN 349 (356)
T ss_dssp EEECCCTTCCCC--EEEE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS-SEEEEECTTSC
T ss_pred EEeeccCCCcce--eEcc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCc
Confidence 4 244333 2222 22367899999999999999999999999999987655 68999999 79999999999
Q ss_pred EEEecC
Q 008005 554 IRIWGL 559 (581)
Q Consensus 554 I~iW~~ 559 (581)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999986
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.3e-27 Score=245.69 Aligned_cols=302 Identities=13% Similarity=0.118 Sum_probs=231.4
Q ss_pred ccCcEEEEE---EcCCCCEEEEEe--------------CCCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeE
Q 008005 271 HSDEVWFLQ---FSHDGKYLASSS--------------KDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (581)
Q Consensus 271 h~~~V~~l~---~s~~g~~lasgs--------------~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l 332 (581)
....+..++ |+|++..++..+ .++.+.||.++.. +.......+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 445677778 888777655432 2333355555432 2334555555554 46699999988888
Q ss_pred EEeeCCCcEEEEEcCCCcEEEE-----EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEE
Q 008005 333 LTCGQEEAIRRWDVNSGECLHV-----YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i 407 (581)
++++.++.|++||+.+++.... +..|...+.+++|++++..+++++.|+.|++||++++........+...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8888899999999999998873 34678899999999999999999999999999998877666555666689999
Q ss_pred EEeeCCCEEEEEE-cCCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe--------eCCcEEEEEecCCCcee
Q 008005 408 AITDDGKRIISIC-REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL--------INQEIHLWSIESDPKLV 477 (581)
Q Consensus 408 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~--------~d~~i~iwd~~~~~~~~ 477 (581)
+|+|+++.+++++ .++.|++||++++. .........+.+++|+|+++++++++ .|+.|++||+.++ +..
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-KLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-EEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-cEE
Confidence 9999999886555 79999999998877 44445566799999999999999988 4789999999886 554
Q ss_pred EEEeccccceeEEEeeecCCCCc-EEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC------
Q 008005 478 SRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD------ 550 (581)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~------ 550 (581)
..+ .+... +..+.++|+++ ++++++.|+.|++||+.+++.+..+. +...+.+++|+|++ ..+++++.
T Consensus 297 ~~~-~~~~~---~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 297 DTI-GPPGN---KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPT 370 (433)
T ss_dssp EEE-EEEEC---EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTT
T ss_pred eec-cCCCC---cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccc
Confidence 444 22222 22334488886 45677899999999999999888776 67889999999999 67777765
Q ss_pred ---------CCcEEEecCCcccccccc----CCCceEEecCCC
Q 008005 551 ---------DRTIRIWGLDQINMKHRD----QSNGIVHHCNGR 580 (581)
Q Consensus 551 ---------Dg~I~iW~~~~~~~~~~~----~~~~~~~~~~G~ 580 (581)
||.|++||+.+++..... ...++.++|||+
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNR 413 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSC
T ss_pred cccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCC
Confidence 579999999987765432 356778888886
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.9e-27 Score=236.14 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=199.8
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC--CCCEEEEEeCCCeEEEEEcccCC------eeeE
Q 008005 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDG------QVSL 309 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~------~~~~ 309 (581)
++....+..+.+|+-.... ...+....+.+|...|++++|+| ++++|++|+.||.|++||+..+. .+..
T Consensus 26 l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~ 102 (351)
T 3f3f_A 26 VATCSSDQHIKVFKLDKDT---SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK 102 (351)
T ss_dssp EEEEETTSEEEEEEECSSS---CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred EEEeeCCCeEEEEECCCCC---CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence 4455566677787644221 12345778889999999999999 69999999999999999998642 2245
Q ss_pred EEEecCCCCCEEEEEeCCC--CCeEEEeeCCCcEEEEEcCCCcEEEEEe-------------cCCCeEEEEEEecC---C
Q 008005 310 KHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGECLHVYE-------------KTGVGLISCGWFLD---G 371 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~ 371 (581)
...+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. .+...+.++.|+|+ +
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 6778899999999999999 9999999999999999998876543332 46778999999997 8
Q ss_pred CeEEEEeCCCcEEEEeCCCCeE--EeeccCccccEEEEEEeeCC----CEEEEEEcCCeEEEEECCCCeeeE--EecCCc
Q 008005 372 GGIFAGMTDKSICLWDLDGREL--ESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANFERW--IEEEEV 443 (581)
Q Consensus 372 ~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 443 (581)
..+++++.++.+.+|+...+.. ......|...|.+++|+|++ +++++++.||.|++||++...... ......
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 262 (351)
T 3f3f_A 183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN 262 (351)
T ss_dssp CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence 9999999999998888877654 44445567799999999998 899999999999999998765222 222222
Q ss_pred eEEEEECCCCCEEEEEe----eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 444 ITSFSLSKDNKYLLVNL----INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
......++....+..+. ....+.+|+.... ..+..+.+|... +..+.++|++++|++|+.||.|++||+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGE---VWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ----------------------------CCSEEE-EEEEEECTTSSC---EEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred eeccCCCcccccccccccccccceeeeecccccc-cEEEEEeccccc---EEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 33333344433333333 2334455554443 566777888777 444455899999999999999999999987
Q ss_pred ceEEEe
Q 008005 520 ELVLAL 525 (581)
Q Consensus 520 ~~~~~~ 525 (581)
+....+
T Consensus 339 ~~~~~~ 344 (351)
T 3f3f_A 339 NEFKCM 344 (351)
T ss_dssp SCEEEE
T ss_pred cchhhe
Confidence 655433
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-28 Score=240.72 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=184.2
Q ss_pred EeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC---------Ce-E
Q 008005 324 SWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---------RE-L 393 (581)
Q Consensus 324 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~---------~~-~ 393 (581)
.+.+++.++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+... .. +
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888776 345777788887 99999999999997753 33 3
Q ss_pred EeeccCccccEEEEEEee--CCCEEEEEEcCCeEEEEECCCCeeeE---EecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008005 394 ESWKGQKTLRISDMAITD--DGKRIISICREAAILLLDREANFERW---IEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
......+...|.+++++| +++++++++.|+.|++||++++.... ..+...+.+++|+|++.+|++|+.|+.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 344445556899999999 99999999999999999999887422 2345579999999999999999999999999
Q ss_pred EecCCCceeEEEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc---CCCCEE--EEEEcCCCC
Q 008005 469 SIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG---HSGSVN--CVSWNPANL 542 (581)
Q Consensus 469 d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~v~--~l~~~p~~~ 542 (581)
|++++......+.. |... +..+.++|++.+|++++. +.|++||+++++.+..+.. |...+. +++|+|++
T Consensus 198 d~~~~~~~~~~~~~~h~~~---v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 272 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAK---IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG- 272 (343)
T ss_dssp ESSCTTSCCEECCCCTTSC---EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-
T ss_pred ECCCCCCCccEEeccCCCC---EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCC-
Confidence 99998444377777 7776 444455899999999994 5999999999877655544 444454 69999999
Q ss_pred cEEEEEEC-CCcEEEecCCccc
Q 008005 543 HMLASASD-DRTIRIWGLDQIN 563 (581)
Q Consensus 543 ~~l~s~s~-Dg~I~iW~~~~~~ 563 (581)
.+|++++. |+.|++|++.+..
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTT
T ss_pred CEEEEecCCCCcEEEEEEcccc
Confidence 79999988 9999999996654
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.6e-26 Score=239.65 Aligned_cols=290 Identities=11% Similarity=0.119 Sum_probs=229.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc--CCCcEEEEEec
Q 008005 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV--NSGECLHVYEK 357 (581)
Q Consensus 280 ~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~ 357 (581)
|+|++.++++++.|++|.+||..++ ++..++..+.. +.+++|+||+++|++++.|++|.+||+ .+++++..+..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 7788999999999999999999876 34455653333 899999999999999999999999999 88998888874
Q ss_pred CCCeEEEEEEec----CCCeEEEEeC-CCcEEEEeCCCCeEEeeccC-----------ccccEEEEEEeeCCCEE-EEEE
Q 008005 358 TGVGLISCGWFL----DGGGIFAGMT-DKSICLWDLDGRELESWKGQ-----------KTLRISDMAITDDGKRI-ISIC 420 (581)
Q Consensus 358 ~~~~v~~~~~~~----~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~l-~~~~ 420 (581)
...+..++|+| |++++++++. +++|.+||..+.++...... ....+..+.+++++..+ ++..
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 55789999999 9999999885 89999999988765544322 12368899999987655 5556
Q ss_pred cCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEec----cccceeEEEe
Q 008005 421 REAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG----HKRARFVIRS 492 (581)
Q Consensus 421 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~i~~ 492 (581)
.++.|.+||..+.. ...+.+...+..+.|+|+++++++++ .++.|.+||..++ +++..+.. |.... ..
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g--~~- 375 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRG--AN- 375 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTC--EE-
T ss_pred CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCC--cc-
Confidence 78999999998754 23455667788999999999887765 4889999999987 77777764 33221 11
Q ss_pred eecCCC-CcEEEEEe-CCCcEEEEeCCC-------CceEEEeccCCCCEEEEEEcCCCCcEEEEEE-------CCCcEEE
Q 008005 493 CFGGFE-QAFIASGS-EDSQVYIWHRYT-------GELVLALAGHSGSVNCVSWNPANLHMLASAS-------DDRTIRI 556 (581)
Q Consensus 493 ~~~~~~-~~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-------~Dg~I~i 556 (581)
+.+|+ +.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++++|++ +.|++++ .+++|.+
T Consensus 376 -~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 376 -FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp -EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEE
T ss_pred -cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEE
Confidence 12555 66777775 689999999998 89999999999899999999999 6888876 2789999
Q ss_pred ecCCccccc-cc-------------cCCCceEEecCCC
Q 008005 557 WGLDQINMK-HR-------------DQSNGIVHHCNGR 580 (581)
Q Consensus 557 W~~~~~~~~-~~-------------~~~~~~~~~~~G~ 580 (581)
||+.+++.. .. ...-.+.+++||+
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~ 491 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 491 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC
Confidence 999988765 21 1244677777775
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.5e-25 Score=235.67 Aligned_cols=325 Identities=10% Similarity=0.065 Sum_probs=238.1
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEc--ccCCeeeEEEEecCC
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV--KEDGQVSLKHRLSGH 316 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~--~~~~~~~~~~~~~~h 316 (581)
+.+..+..+.+|+.. ..+++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+. .....+. +
T Consensus 153 vs~~~d~~V~v~D~~-------t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~ 220 (543)
T 1nir_A 153 VTLRDAGQIALVDGD-------SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-I 220 (543)
T ss_dssp EEEGGGTEEEEEETT-------TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-C
T ss_pred EEEcCCCeEEEEECC-------CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-c
Confidence 344445566666432 3345677763333 889999999999999999999999999 554 4455565 4
Q ss_pred CCCEEEEEeCC----CCCeEEEeeC-CCcEEEEEcCCCcEEEEEecC-----------CCeEEEEEEecCCCeE-EEEeC
Q 008005 317 RKPVFTVSWSP----NDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT-----------GVGLISCGWFLDGGGI-FAGMT 379 (581)
Q Consensus 317 ~~~V~~l~~sp----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~sg~~ 379 (581)
...+..++|+| ||+++++++. +++|.+||..+++++..+..+ ...+..+.++|++..+ ++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 45689999999 9999999885 899999999999999888652 2368899999977664 55667
Q ss_pred CCcEEEEeCCCCeEEe-eccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCee-eEEe-----cCCceEEEEECC
Q 008005 380 DKSICLWDLDGRELES-WKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFE-RWIE-----EEEVITSFSLSK 451 (581)
Q Consensus 380 dg~i~vwd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~-----~~~~i~~~~~sp 451 (581)
++.|.+||+.+..... ........+.+++|+|+|+++++++ .+++|.+||..+++. .... |.+....+ ++|
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 8999999997643211 1111234688899999999877665 589999999999872 2222 33333333 467
Q ss_pred C-CCEEEEEe-eCCcEEEEEecCC------CceeEEEeccccceeEEEeeecCCCCcEEEEEe-------CCCcEEEEeC
Q 008005 452 D-NKYLLVNL-INQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-------EDSQVYIWHR 516 (581)
Q Consensus 452 ~-~~~l~~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs-------~dg~I~iwd~ 516 (581)
+ +..++++. .+++|.+||+.+. .+.++.+.++......+. ++|++++|++++ .+++|.+||+
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~---~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK---THPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE---CCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE---cCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 7 55555554 4799999999871 378889988876543333 499999999987 2779999999
Q ss_pred CCCceE-EEe--------ccCCCCEEEEEEcCCCCcEEEEEE----CCCcEEEecCCccccccccCCCceEEecCCC
Q 008005 517 YTGELV-LAL--------AGHSGSVNCVSWNPANLHMLASAS----DDRTIRIWGLDQINMKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 517 ~~~~~~-~~~--------~~h~~~v~~l~~~p~~~~~l~s~s----~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G~ 580 (581)
.+++.. ..+ ..+...+..+.|+|+|..++++.. .|+.|.|||..++++....+...+ ..|.|+
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~-~~p~g~ 532 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRL-ITPTGK 532 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTC-CSEEEE
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCc-cCCCee
Confidence 998876 443 356778999999999954444432 479999999999998877665443 456665
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=3.2e-26 Score=252.11 Aligned_cols=303 Identities=11% Similarity=0.046 Sum_probs=226.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeC-CC-----eEEEEEcccCCeeeEEEEecCCC----------------------CCEEEE
Q 008005 272 SDEVWFLQFSHDGKYLASSSK-DQ-----SAIIWEVKEDGQVSLKHRLSGHR----------------------KPVFTV 323 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~-dg-----~i~iwd~~~~~~~~~~~~~~~h~----------------------~~V~~l 323 (581)
...|.+++|||||++|++++. |+ .|++||+.++... .......+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-EEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-EccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999999999998 88 8999999876322 222222222 237899
Q ss_pred EeCCCCCeEEEeeCCCcEEEEEcCCCc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcc
Q 008005 324 SWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 324 ~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 401 (581)
+|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|++++ ++.|++||+.++........+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 99999999999886 899999999883 3445667777899999999999999887 4689999999887766554433
Q ss_pred cc----------------EEEEEEeeCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 008005 402 LR----------------ISDMAITDDGKRIISICREA---------------------------------AILLLDREA 432 (581)
Q Consensus 402 ~~----------------i~~i~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~ 432 (581)
.. +..++|+|||++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 22 47899999999999998765 889999988
Q ss_pred -CeeeEE----ecCCceEEEEECCCCCEEEEEee-----CCcEEEEEecCCCceeEEEeccccc-eeEEEeeecCCCCcE
Q 008005 433 -NFERWI----EEEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDPKLVSRYKGHKRA-RFVIRSCFGGFEQAF 501 (581)
Q Consensus 433 -~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 501 (581)
+..... .+...+..++| |||++|++++. +..|++||+.++ .....+..+... ...+....++|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 763333 35677899999 99999998765 467999999887 555555444321 001223445899999
Q ss_pred EEEEeCCCcEEEEeCC-CCceEEEeccCCCCEEEE-EEcCCCCcEEEEEECCC--cEEEecCCc-ccccc----ccCCCc
Q 008005 502 IASGSEDSQVYIWHRY-TGELVLALAGHSGSVNCV-SWNPANLHMLASASDDR--TIRIWGLDQ-INMKH----RDQSNG 572 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~-~~~~~~~~~~h~~~v~~l-~~~p~~~~~l~s~s~Dg--~I~iW~~~~-~~~~~----~~~~~~ 572 (581)
+++++.||.+.||.+. ++. ...+..|...|.++ .|+|++..++++++.|+ .++||+++. +.... ......
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~ 429 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHS 429 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEE
T ss_pred EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceE
Confidence 9999999987777665 455 78888888889887 59999954555666666 899999863 33221 122346
Q ss_pred eEEecCCC
Q 008005 573 IVHHCNGR 580 (581)
Q Consensus 573 ~~~~~~G~ 580 (581)
+.|++||+
T Consensus 430 ~~~spdg~ 437 (741)
T 2ecf_A 430 ASFARNAS 437 (741)
T ss_dssp EEECTTSS
T ss_pred EEECCCCC
Confidence 78889886
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.2e-26 Score=233.60 Aligned_cols=295 Identities=12% Similarity=0.056 Sum_probs=221.5
Q ss_pred cCcEEEEEEcCCCC-EEEEEe----CCC----eEEEEEc--ccCCeeeEEEEecCCCCCEEEEEeCC-------------
Q 008005 272 SDEVWFLQFSHDGK-YLASSS----KDQ----SAIIWEV--KEDGQVSLKHRLSGHRKPVFTVSWSP------------- 327 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs----~dg----~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~sp------------- 327 (581)
...|...+|++.|. ++++|+ .|| +++|||+ .++.. .....+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV-LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE-EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE-EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677788888775 666776 467 8999999 76643 23356788888888777764
Q ss_pred -CCCeEEEeeCC------CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEeec
Q 008005 328 -NDHQLLTCGQE------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWK 397 (581)
Q Consensus 328 -~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~ 397 (581)
.+..++.++.+ +.|++||+.. .....+..|...+.+++|+||++.|++++.++ .|++||+.+++.....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 25566666654 7999999974 45677778888999999999999999999885 9999999988776554
Q ss_pred cCccccEEEEEEeeCCCEEE-EEEcCC--eEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEee-CC--cEEEEEe
Q 008005 398 GQKTLRISDMAITDDGKRII-SICREA--AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQ--EIHLWSI 470 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~-~~~~dg--~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~ 470 (581)
.. ...+.+++|+|||+.|+ +++.++ .|++||+.++. .....+...+.+++|+|||++|++++. ++ .|++||+
T Consensus 220 ~~-~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cC-CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 43 45799999999999888 555554 59999998877 445567778999999999999998886 44 6777788
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
.++ . ...+..+... +....++|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+| .+|++
T Consensus 299 ~~~-~-~~~l~~~~~~---~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg-~~l~~ 370 (415)
T 2hqs_A 299 NGG-A-PQRITWEGSQ---NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNG-TMVIY 370 (415)
T ss_dssp TSS-C-CEECCCSSSE---EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTS-SEEEE
T ss_pred CCC-C-EEEEecCCCc---ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCC-CEEEE
Confidence 775 2 3344444332 3344559999999988865 58999999988774 565564 89999999999 67888
Q ss_pred EECCC---cEEEecCCccccccccC----CCceEEec
Q 008005 548 ASDDR---TIRIWGLDQINMKHRDQ----SNGIVHHC 577 (581)
Q Consensus 548 ~s~Dg---~I~iW~~~~~~~~~~~~----~~~~~~~~ 577 (581)
++.|+ .|++||++......-.. ...++|+|
T Consensus 371 ~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred EEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccc
Confidence 87776 79999998665443222 34455554
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.5e-25 Score=214.35 Aligned_cols=196 Identities=14% Similarity=0.045 Sum_probs=147.3
Q ss_pred ccCcEEEEEEcCC----CCEEEEEeC--------------------CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC
Q 008005 271 HSDEVWFLQFSHD----GKYLASSSK--------------------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS 326 (581)
Q Consensus 271 h~~~V~~l~~s~~----g~~lasgs~--------------------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s 326 (581)
|...|++++|+|| ++++++++. |+.|++|++...+ +....+.+|...++.++|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFA 187 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEee
Confidence 3447778888888 888887663 7888888885533 3445566788888888888
Q ss_pred C---CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCC---CeEEEEEEecCCCeE------------EEEeCCCcEEEEeC
Q 008005 327 P---NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG---VGLISCGWFLDGGGI------------FAGMTDKSICLWDL 388 (581)
Q Consensus 327 p---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~sg~~dg~i~vwd~ 388 (581)
| ++.+|++++.|++|+|||+.+|++++++..|. ..+.+++|+|++..+ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 8 77899999999999999999999999998653 367778999999876 56788999999999
Q ss_pred CCCeEEeec-----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceE-EEEECCCCCEEEEEe
Q 008005 389 DGRELESWK-----GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVIT-SFSLSKDNKYLLVNL 460 (581)
Q Consensus 389 ~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~-~~~~sp~~~~l~~~~ 460 (581)
.++...... ..+...+.+ .+.++..+++++.|++|++||+.+++ ..+..|...+. +++|+|||++|++|+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEE--EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred CCCEEEEEEEeeccCCCcceeEc--cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence 988765432 233333333 33347889999999999999999988 33334555544 689999999999999
Q ss_pred eCCcEEEEEe
Q 008005 461 INQEIHLWSI 470 (581)
Q Consensus 461 ~d~~i~iwd~ 470 (581)
.|++|++||+
T Consensus 346 ~D~TIklWd~ 355 (356)
T 2w18_A 346 KDGNIFVYHY 355 (356)
T ss_dssp TTSCEEEEEE
T ss_pred CCCcEEEecC
Confidence 9999999996
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.2e-25 Score=226.17 Aligned_cols=263 Identities=12% Similarity=0.105 Sum_probs=209.1
Q ss_pred eecccccCcEEEEEEcC--------------CCCEEEEEeCC------CeEEEEEcccCCeeeEEEEecCCCCCEEEEEe
Q 008005 266 QILEAHSDEVWFLQFSH--------------DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~--------------~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 325 (581)
..+.+|...+..+++++ .+..++.++.+ +.|++||+... ....+.+|...|.+++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~----~~~~l~~~~~~v~~~~~ 186 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY----NQFVVHRSPQPLMSPAW 186 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC----SCEEEEEESSCEEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC----CCEEEeCCCCcceeeEE
Confidence 45788888888887775 15566666554 79999999743 23556678899999999
Q ss_pred CCCCCeEEEeeCCC---cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEE-EEeCCCc--EEEEeCCCCeEEeeccC
Q 008005 326 SPNDHQLLTCGQEE---AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF-AGMTDKS--ICLWDLDGRELESWKGQ 399 (581)
Q Consensus 326 sp~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~--i~vwd~~~~~~~~~~~~ 399 (581)
+|||++|++++.++ .|++||+.+++.. .+..+...+.+++|+||++.|+ +++.++. |++||+.+++......
T Consensus 187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~- 264 (415)
T 2hqs_A 187 SPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD- 264 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-
Confidence 99999999999875 9999999999875 4666777899999999999888 6666654 9999998887755544
Q ss_pred ccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecC
Q 008005 400 KTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIES 472 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~ 472 (581)
+...+.+++|+|||+.|++++.+ + .|++||+.++. .....+...+.+++|+|+|++|++++.+ ..|++||+.+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 44589999999999999988864 4 78888998876 3344566788999999999999998875 5899999988
Q ss_pred CCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC---cEEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
+ .. ..+..+. . +....++|+|++|++++.++ .|++||+. +.....+.+|.+.|.+++|+|..
T Consensus 345 ~-~~-~~l~~~~-~---~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 345 G-GV-QVLSSTF-L---DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp C-CE-EECCCSS-S---CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred C-CE-EEecCCC-C---cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 6 33 3444443 2 33445599999999988877 79999986 66678899999999999999965
No 131
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.1e-25 Score=228.19 Aligned_cols=230 Identities=17% Similarity=0.170 Sum_probs=166.9
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcC--------CCCEEEEEeCCCeEEEEEcccCCeee
Q 008005 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--------DGKYLASSSKDQSAIIWEVKEDGQVS 308 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--------~g~~lasgs~dg~i~iwd~~~~~~~~ 308 (581)
.+...+.|..+.+|+..... ....+++..+.||.+.|++++|+| |+++||+|+.|++|+|||+.++ .
T Consensus 103 ~las~~~d~~v~lw~~~~~~--~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~ 177 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNET--IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---G 177 (393)
T ss_dssp EEEEEETTSCEEEEEEETTE--EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---E
T ss_pred EEEEEeCCCcEEEEECCCCc--cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---c
Confidence 44566778888888644321 122345677899999999999998 8899999999999999999866 3
Q ss_pred EEEEecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCcEEEEE-------------------------ecCCCeE
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVY-------------------------EKTGVGL 362 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~v 362 (581)
....+.+|..+|.+++|+|++. +|++++.||+|++||+.+++..... ..|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 4456677899999999999874 7999999999999999987654322 2456678
Q ss_pred EEEEEe-cCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEE------------------EEEee--CCCEEEEEEc
Q 008005 363 ISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD------------------MAITD--DGKRIISICR 421 (581)
Q Consensus 363 ~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~------------------i~~~~--~~~~l~~~~~ 421 (581)
.++.|+ +++..+++++.|+++++||+..+........+...+.. ..+.+ ++.++++++.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 888887 79999999999999999999765433222222222222 22332 3345667788
Q ss_pred CCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 422 EAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 422 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
||.|++||..++. .....+...|.+++|+|||++|++++. +.+.+|.+..
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~-~Gv~lvrL~g 389 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE-GSVLLTRLMG 389 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES-SEEEEEEEGG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEeC
Confidence 9999999998876 556788899999999999999999875 5577776643
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=9.7e-24 Score=208.55 Aligned_cols=277 Identities=9% Similarity=0.097 Sum_probs=200.5
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCCCcE-EEEE
Q 008005 279 QFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGEC-LHVY 355 (581)
Q Consensus 279 ~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~-~~~~ 355 (581)
.|.+++. .+++++.++.|.+||..++. ....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLE---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCC---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccc---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 4556555 47778889999999998763 334444556667 9999999997776665 88999999999987 7777
Q ss_pred ecCCCeEEEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCe-EEEEEC
Q 008005 356 EKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAA-ILLLDR 430 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~-i~i~d~ 430 (581)
..+..+..+++|+|++++++++..++ .|.+||+.+++......... .+.+++|+|+|+++++++ .++. |.+|++
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 77666665599999999999655553 89999999887765554433 579999999998666554 4577 999998
Q ss_pred CCCe------eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCce---eEEEeccccceeEEEeeecCCCCc
Q 008005 431 EANF------ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 431 ~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
.... .........+..++|+|+++++++++ .++.|.+||+.++ +. +..+...... ..+.++|+|+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~----~~~~~spdg~ 233 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNLP----GTIVVSRDGS 233 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSCC----CCEEECTTSS
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCCC----ceEEECCCCC
Confidence 7533 12234456689999999999776665 5889999999877 44 5555543222 2334489999
Q ss_pred EEEEEe-CCCcEEEEeCCCCce--EEEeccC----CC---CEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 501 FIASGS-EDSQVYIWHRYTGEL--VLALAGH----SG---SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 501 ~l~sgs-~dg~I~iwd~~~~~~--~~~~~~h----~~---~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++.++ .++.|.+||..+++. +..+..+ .. ...+++|+|++..+++++..++.|.+|++.+....
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 776655 577899999999887 4433322 22 23568999999534455566779999999876654
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=7.8e-24 Score=209.99 Aligned_cols=287 Identities=11% Similarity=0.114 Sum_probs=199.5
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-CcEEEEEcC--CCcE--EEEEecCCC
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-EAIRRWDVN--SGEC--LHVYEKTGV 360 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g~i~vwd~~--~~~~--~~~~~~~~~ 360 (581)
++++++.|+.|++|++...+....... ..|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 445557899999999964444344443 3467789999999999999988886 899999998 5553 34444444
Q ss_pred eEEEEEEecCCCeEEEEeC-CCcEEEEeCC---CCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCC-Ce
Q 008005 361 GLISCGWFLDGGGIFAGMT-DKSICLWDLD---GRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA-NF 434 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~ 434 (581)
.+..++|+|+++++++++. ++.|.+||+. ........... ..+.+++|+|+++++++++ .++.|.+||+.+ +.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7889999999998877765 8889999993 33333333333 3688999999999888887 899999999987 54
Q ss_pred ee------EE-ecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCC-ce--eEEEecc----ccceeEEEeeecCCCC
Q 008005 435 ER------WI-EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDP-KL--VSRYKGH----KRARFVIRSCFGGFEQ 499 (581)
Q Consensus 435 ~~------~~-~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~-~~--~~~~~~~----~~~~~~i~~~~~~~~~ 499 (581)
.. .. .....+..++|+|+++++++++ .++.|.+|++.... .. ....... ..... ...+.++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~i~~s~dg 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW-AADIHITPDG 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC-EEEEEECTTS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC-ccceEECCCC
Confidence 21 12 2344788999999999877665 78999999996421 21 2222211 11112 2234448999
Q ss_pred cEEE-EEeCCCcEEEEeCC--C--CceEEEeccCCCCEEEEEEcCCCCcEEEEEE-CCCcEEEecCC--cccccc-----
Q 008005 500 AFIA-SGSEDSQVYIWHRY--T--GELVLALAGHSGSVNCVSWNPANLHMLASAS-DDRTIRIWGLD--QINMKH----- 566 (581)
Q Consensus 500 ~~l~-sgs~dg~I~iwd~~--~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~iW~~~--~~~~~~----- 566 (581)
++++ ++..++.|++||+. + .+.+..+..+.. +.+++|+|++ .+|++++ .|+.|.+|+++ ++++..
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 8777 45578999999988 3 345555655544 8999999999 5666666 68999999554 443321
Q ss_pred -ccCCCceEEecC
Q 008005 567 -RDQSNGIVHHCN 578 (581)
Q Consensus 567 -~~~~~~~~~~~~ 578 (581)
.....++++.++
T Consensus 321 ~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 321 VGQGPMWVVVNAH 333 (343)
T ss_dssp CSSSCCEEEEEEE
T ss_pred cCCCCeeEEEEcc
Confidence 123555555553
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.2e-24 Score=236.86 Aligned_cols=299 Identities=9% Similarity=0.056 Sum_probs=211.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC---CEEEEEeCCCCCeEEEeeCC---------CcE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQE---------EAI 341 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~d---------g~i 341 (581)
.+.+++|+|||+++++ +.||+|++||+.++. ....+..|.. .|.+++|||||++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 3567899999998776 789999999998774 3344555654 49999999999999998764 778
Q ss_pred EEEEcCCCcEEEEEec---CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCcccc---------------
Q 008005 342 RRWDVNSGECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR--------------- 403 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~--------------- 403 (581)
.+||+.+++. ..+.. +...+..++|+|||+.|++++. +.|++||+.++........+...
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEe
Confidence 8999999886 33432 3334788999999999999886 79999999887665554433222
Q ss_pred ---EEEEEEeeCCCEEEEEEcCC----------------------------------eEEEEECCCCee-eEEe-c----
Q 008005 404 ---ISDMAITDDGKRIISICREA----------------------------------AILLLDREANFE-RWIE-E---- 440 (581)
Q Consensus 404 ---i~~i~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~-~~~~-~---- 440 (581)
+.+++|+|||+.|++++.++ .|++||+.++.. ..+. +
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 37899999999999987653 799999988762 2222 2
Q ss_pred --CCceEEEEECCCCCEEEEEeeC----CcEEEEEecCCCceeEEEecc-ccceeEE-EeeecCCCCcEEEE--EeCCC-
Q 008005 441 --EEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDPKLVSRYKGH-KRARFVI-RSCFGGFEQAFIAS--GSEDS- 509 (581)
Q Consensus 441 --~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~-~~~~~~i-~~~~~~~~~~~l~s--gs~dg- 509 (581)
...+.+++|+|||+++++.... ..|++||+.++ +....+..+ ....... ....++|+|+.|+. +..++
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 4578999999999988777543 57999999887 444444332 2211100 13345899997664 45666
Q ss_pred -----cEEEEe-CCCCc--eEEEeccCCCCEEE-EEEcCCCCcEEEEEEC-C--CcEEEecCCccc---cc-------cc
Q 008005 510 -----QVYIWH-RYTGE--LVLALAGHSGSVNC-VSWNPANLHMLASASD-D--RTIRIWGLDQIN---MK-------HR 567 (581)
Q Consensus 510 -----~I~iwd-~~~~~--~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~-D--g~I~iW~~~~~~---~~-------~~ 567 (581)
.|++|| ..+++ +...+..+...+.. ++|+|++ +.|+..+. + +.+++|+++... .. +.
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence 577888 44444 14555544445554 6999999 56655544 4 889999986432 11 12
Q ss_pred cCCCceEEecCCC
Q 008005 568 DQSNGIVHHCNGR 580 (581)
Q Consensus 568 ~~~~~~~~~~~G~ 580 (581)
.....+.|+|||+
T Consensus 410 ~~~~~~~~spdg~ 422 (723)
T 1xfd_A 410 CTYFSASFSHSMD 422 (723)
T ss_dssp CCCCEEEECTTSS
T ss_pred CCeEEEEECCCCC
Confidence 2356788999986
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.6e-23 Score=201.27 Aligned_cols=252 Identities=16% Similarity=0.146 Sum_probs=192.6
Q ss_pred EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-CcEEEEEecC-CCeEEEEE
Q 008005 289 SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVYEKT-GVGLISCG 366 (581)
Q Consensus 289 sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~~~~ 366 (581)
+++.|++|++||+.++. . ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~---~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK---M-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTE---E-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCc---e-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 34678999999998652 2 24455888999999999999999987 78999999999 8877666555 36788999
Q ss_pred EecCCCeEEEEeC--CC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEE-EEEcCCeEEEEEC--CCCe-eeEE
Q 008005 367 WFLDGGGIFAGMT--DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SICREAAILLLDR--EANF-ERWI 438 (581)
Q Consensus 367 ~~~~~~~l~sg~~--dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~--~~~~-~~~~ 438 (581)
|+|+++.+++++. ++ .|..|++.++....+.... .+..++|+|+++.++ ++..++.+.+|++ .++. ....
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 9999999999983 34 4555555666554444333 588999999999887 6778998888885 3444 4445
Q ss_pred ecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC---------
Q 008005 439 EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED--------- 508 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d--------- 508 (581)
.+...+.+++|+|+++++++++. ++.+.+|++.........+..+... +....++|++++|++++.+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG---DWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE---EEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc---cCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 66778999999999998887764 8899999997443556666655533 4445569999999888876
Q ss_pred --CcEEEEeCCCCce--EEEeccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 509 --SQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 509 --g~I~iwd~~~~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+.|++||+.+++. +..+.+|...+.+++|+|++ ..|++++.|
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~ 292 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYF 292 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEEC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEec
Confidence 5699999988866 44455788899999999999 567666654
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=4.8e-22 Score=198.02 Aligned_cols=269 Identities=9% Similarity=0.060 Sum_probs=206.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-------CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE-eeCCCcEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSK-------DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEAIR 342 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~-------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg~i~ 342 (581)
....+..++|+|+|+++++++. ++.|.+||..++... ..+.. ...+..++|+|+++++++ ...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---QAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---EEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---EEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4567889999999998888774 568999999876433 33332 234778999999996554 45579999
Q ss_pred EEEcCCCcEEEEEecCCC---------eEEEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEeeccCccccEEEEEEee
Q 008005 343 RWDVNSGECLHVYEKTGV---------GLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~ 411 (581)
+||..+++.+..+..+.. .+.++.|+|+++.+++++ .++.|.+||+.+++...........+..++|+|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 999999998888876532 278899999999888776 478899999998887766653444688999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeee-EEe-----cCCceEEEEECCCCCEEEEEeeC-CcEEEEEecCCCceeEEEeccc
Q 008005 412 DGKRIISICREAAILLLDREANFER-WIE-----EEEVITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-----~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
+++.+++++.++.|.+||..++... ... +...+..++|+|++++++++..+ +.|.+||..++ +.+..+....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 273 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE 273 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC
Confidence 9999999999999999999988732 222 34457889999999988777654 89999999887 6666665443
Q ss_pred cceeEEEeeecCCCCcEEEEEe-CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC
Q 008005 485 RARFVIRSCFGGFEQAFIASGS-EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
.. .+.++++++++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|++ +.|+.+..+
T Consensus 274 ~~-----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~v~~~~ 334 (353)
T 3vgz_A 274 SL-----AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADG-KTLYVSVKQ 334 (353)
T ss_dssp CC-----CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTS-CEEEEEEEC
T ss_pred Cc-----eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCC-CEEEEEEcc
Confidence 21 233378888665555 6899999999999998887754 468999999999 555555444
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.2e-22 Score=231.39 Aligned_cols=301 Identities=12% Similarity=0.102 Sum_probs=226.9
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCC------CeEEEEEcccCCeeeEEEEecCCCCCE-------EEEEeCCCCC
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPV-------FTVSWSPNDH 330 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V-------~~l~~sp~~~ 330 (581)
....+.+|...|.+++|||||++||+++.+ ..|++|++.++ ....+..|...+ ..++|+|||+
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ 119 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG----EIKRITYFSGKSTGRRMFTDVAGFDPDGN 119 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT----EEEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC----CeEEcccCCCcccccccccccccCCCCCE
Confidence 456778899999999999999999988643 37899998754 245678888888 9999999999
Q ss_pred eEEEeeCC------CcEEEEEcCCCcEEE-------------------------------------------------EE
Q 008005 331 QLLTCGQE------EAIRRWDVNSGECLH-------------------------------------------------VY 355 (581)
Q Consensus 331 ~l~s~~~d------g~i~vwd~~~~~~~~-------------------------------------------------~~ 355 (581)
++++++.+ ..|.+|++.+++... .+
T Consensus 120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 77777654 357788876654321 12
Q ss_pred ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC--CCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008005 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
..|...+.++.|+++ ..+++++.|+.+.+|.++ ++.......+. .+...+|+|+|+.++.+ .++.|++||....
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 345566778888877 566777788888888764 44444433332 45677999999998887 5899999998544
Q ss_pred eeeEEe------------cCCceEEEEEC-CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc
Q 008005 434 FERWIE------------EEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 434 ~~~~~~------------~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
...... +...+.+++|+ |||+++++++ ++.|.+|++.++ . ...+..+.. ..+....++ +|+
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-~-~~~~~~~~~--~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-Y-VLKVPEPLR--IRYVRRGGD-TKV 349 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-B-EEECSCCSC--EEEEEECSS-SEE
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-c-eEEccCCCc--ceEEeeeEc-CCC
Confidence 322211 23368999999 9999999887 889999998875 3 333444443 124455668 999
Q ss_pred EEEEEeCCCcEE-EEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccc-----cCCCceE
Q 008005 501 FIASGSEDSQVY-IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIV 574 (581)
Q Consensus 501 ~l~sgs~dg~I~-iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~ 574 (581)
.++.++.++.++ +||+.+++... +.+|...+.+++|+|+| +.|++++.++.|++||+.+++.... .....+.
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~ 427 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT 427 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred eEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceE
Confidence 999999988999 99998776554 44888899999999999 7999999999999999998876533 2357889
Q ss_pred EecCCC
Q 008005 575 HHCNGR 580 (581)
Q Consensus 575 ~~~~G~ 580 (581)
|+|||+
T Consensus 428 ~SpDG~ 433 (1045)
T 1k32_A 428 ISDNSR 433 (1045)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 999997
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.8e-22 Score=220.95 Aligned_cols=279 Identities=9% Similarity=0.071 Sum_probs=207.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC----
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS---- 348 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~---- 348 (581)
..|.+++|||| +.++.+. ++.|++||+.++. . ..+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---V-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE---E-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCc---e-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 6665553 6999999998652 2 2345567778999999999999985 679999999998
Q ss_pred -CcEEEEEecCCCe--------------EEEEEEecCCCeEEEEe---------------------------------CC
Q 008005 349 -GECLHVYEKTGVG--------------LISCGWFLDGGGIFAGM---------------------------------TD 380 (581)
Q Consensus 349 -~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~sg~---------------------------------~d 380 (581)
++.......+... +.++.|+|||++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 8766544433332 47899999999999987 44
Q ss_pred CcEEEEeCCCCeEEeecc--CccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCC-eee-EE--ecCC---ceEE
Q 008005 381 KSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIISICREA-----AILLLDREAN-FER-WI--EEEE---VITS 446 (581)
Q Consensus 381 g~i~vwd~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~-~~~-~~--~~~~---~i~~ 446 (581)
..|++||+.++....... .+...+.+++|+|||+.+++++.++ .|++||..++ ... .. .... .+.+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 689999999887655442 3445789999999999999988775 8999999988 422 22 1222 2467
Q ss_pred EEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC-CC----cEEEEeCCCC
Q 008005 447 FSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DS----QVYIWHRYTG 519 (581)
Q Consensus 447 ~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg----~I~iwd~~~~ 519 (581)
+.|+| ||++++++..++.+++|++.........+..+...+. ....++|+++.|+.++. ++ .|+.||..++
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~--~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT--NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE--EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE--eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 89999 9999999988999999998743356666666554422 22345899987765544 44 6777888776
Q ss_pred ceEEEeccCCCCEEEEEEcCCCCcEEEEE-ECC---CcEEEecCCccc
Q 008005 520 ELVLALAGHSGSVNCVSWNPANLHMLASA-SDD---RTIRIWGLDQIN 563 (581)
Q Consensus 520 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~D---g~I~iW~~~~~~ 563 (581)
+ ...+. |...+.+++|+|++ +.++.. +.+ +.|++||+.+++
T Consensus 393 ~-~~~l~-~~~~~~~~~~spdg-~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 K-TKDLT-PESGMHRTQLSPDG-SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp C-CEESC-CSSSEEEEEECTTS-SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred C-ceecc-CCCceEEEEECCCC-CEEEEEecCCCCCcEEEEEECCCCe
Confidence 6 34444 67789999999999 455554 443 569999998775
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=6.1e-23 Score=224.66 Aligned_cols=297 Identities=11% Similarity=0.082 Sum_probs=209.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCee-eEEEEecC--------------CCCCEEEEEeCCCCCeEEEeeCCC
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV-SLKHRLSG--------------HRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~-~~~~~~~~--------------h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
+..+.|+ |..+++++.|+ | +||+.++... ........ +...|.+++|+|| ..++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 3446777 66677777788 8 9999876441 22211110 1256999999999 6666553 59
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----CeEEeeccCcccc-----------
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLR----------- 403 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~~~~~----------- 403 (581)
.|++||+.+++.... ..+...+.+++|+|||+.|+++ .++.|++||+.+ ++...........
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 999999998876544 4456678889999999999985 689999999987 6665544433322
Q ss_pred ---EEEEEEeeCCCEEEEEE---------------------------------cCCeEEEEECCCCeeeEE----ecCCc
Q 008005 404 ---ISDMAITDDGKRIISIC---------------------------------REAAILLLDREANFERWI----EEEEV 443 (581)
Q Consensus 404 ---i~~i~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~----~~~~~ 443 (581)
+.+++|+|||++|++++ .+..|++||+.++..... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 446899999998873322 34567
Q ss_pred eEEEEECCCCCEEEEEeeCC-----cEEEEEecCCCceeEEEe-cc-ccceeEEEeeecCC--CCcEEEEEeCCCcEEEE
Q 008005 444 ITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYK-GH-KRARFVIRSCFGGF--EQAFIASGSEDSQVYIW 514 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~--~~~~l~sgs~dg~I~iw 514 (581)
+.+++|+|||++|++++.++ .|++||+.++. ....+. .. ......+....++| +|+++++++.||.++||
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 89999999999999988776 89999998862 333322 11 11110112334588 99999999999999999
Q ss_pred eCC-CCceEEEeccCCCCEEE-EEEcCCCCcEEEEEECCC----cEEEecCCcccccc---ccCCCceEEecCCC
Q 008005 515 HRY-TGELVLALAGHSGSVNC-VSWNPANLHMLASASDDR----TIRIWGLDQINMKH---RDQSNGIVHHCNGR 580 (581)
Q Consensus 515 d~~-~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg----~I~iW~~~~~~~~~---~~~~~~~~~~~~G~ 580 (581)
++. ++..+..+..|...+.+ ++|+|++..++++++.++ .|..|++.+++... ......+.|+|||+
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGS 413 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSS
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCC
Confidence 876 67778888888888887 799999954445555555 67777776665332 22345678899886
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.4e-22 Score=200.31 Aligned_cols=271 Identities=10% Similarity=0.051 Sum_probs=200.1
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEec-CCCC-CEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCCcEEEEEecCC--
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRK-PVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTG-- 359 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~-~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~-- 359 (581)
+++++++.++.|.+||..++ +....+. ++.. .+.+++|+|+++++ +++..++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 47899999999999999865 3334443 2222 47889999999766 455567899999999999887765421
Q ss_pred ---CeEEEEEEecCCCeEEEEe------------CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 360 ---VGLISCGWFLDGGGIFAGM------------TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 360 ---~~v~~~~~~~~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
..+.+++|+|++++++++. .++.|.+||+.+++........ ..+.+++|+|++++++++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCe
Confidence 2566899999999999886 5799999999887765544332 367889999999988887 689
Q ss_pred EEEEECCCCeee-EEecCCceEEEEECCCCCEEEEEeeCC------------------------cEEEEEecCCCceeEE
Q 008005 425 ILLLDREANFER-WIEEEEVITSFSLSKDNKYLLVNLINQ------------------------EIHLWSIESDPKLVSR 479 (581)
Q Consensus 425 i~i~d~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~------------------------~i~iwd~~~~~~~~~~ 479 (581)
|++||+.++... ..........+.|+|+++.+++.+..+ .|.+||+.++......
T Consensus 156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 999999988732 232222122347899988776554332 4689999887332222
Q ss_pred EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+..+... ...+.++|++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ +.|++++.|+.|++||+
T Consensus 236 ~~~~~~~---~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 236 VRIMDVF---YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG-STVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEECSSC---EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS-CEEEEESBSSEEEEEET
T ss_pred cCCCCCc---eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC-CEEEEEcCCCcEEEEEC
Confidence 3333322 2234448999999888 799999999999988877644 567899999999 67888889999999999
Q ss_pred Ccccccccc
Q 008005 560 DQINMKHRD 568 (581)
Q Consensus 560 ~~~~~~~~~ 568 (581)
.+++.....
T Consensus 309 ~~~~~~~~~ 317 (337)
T 1pby_B 309 ETLEKKGQV 317 (337)
T ss_dssp TTCCEEEEE
T ss_pred cCCcEEEEE
Confidence 988766543
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=223.63 Aligned_cols=281 Identities=12% Similarity=0.100 Sum_probs=208.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.|.+++|||||++|++++. +.|++||+.++.. .....+..|...+.+++|+|||++|++++ ++.|++||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 4889999999999999986 8999999986510 01234667888899999999999999987 4699999999988765
Q ss_pred EEecCCCe----------------EEEEEEecCCCeEEEEeCCC---------------------------------cEE
Q 008005 354 VYEKTGVG----------------LISCGWFLDGGGIFAGMTDK---------------------------------SIC 384 (581)
Q Consensus 354 ~~~~~~~~----------------v~~~~~~~~~~~l~sg~~dg---------------------------------~i~ 384 (581)
....+... +.++.|+|||++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 54444332 46799999999999988765 789
Q ss_pred EEeCCC-CeEEeecc--CccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCCCee-eEE-ecCC----ceEEEEEC
Q 008005 385 LWDLDG-RELESWKG--QKTLRISDMAITDDGKRIISICR-----EAAILLLDREANFE-RWI-EEEE----VITSFSLS 450 (581)
Q Consensus 385 vwd~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~-~~~-~~~~----~i~~~~~s 450 (581)
+||+.+ ++...... .+...+..++| |||+.|++++. +..|++||..++.. ... .+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 76655442 24557899999 99999998764 56899999998772 222 2222 34689999
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEE-EEeCCC--cEEEEeCCC-CceEEEec
Q 008005 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDS--QVYIWHRYT-GELVLALA 526 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-sgs~dg--~I~iwd~~~-~~~~~~~~ 526 (581)
|||++++++..++.+++|.+..... ...+..+...+. ....++++++.|+ +++.++ .+++|++.. +.....+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~--~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD--ELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE--EEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE--eEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888888899888888864334 666666654422 2233588998765 555555 899999764 55566666
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEECC---CcEEEecCCcc
Q 008005 527 GHSGSVNCVSWNPANLHMLASASDD---RTIRIWGLDQI 562 (581)
Q Consensus 527 ~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~iW~~~~~ 562 (581)
. ...+.+++|+|++..++++++.. +.+.+|+....
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5 66789999999995444444443 46888887544
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=2.1e-22 Score=215.23 Aligned_cols=272 Identities=15% Similarity=0.073 Sum_probs=201.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-CCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEeCCCCCeEEEeeC---CCcEEEEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQ---EEAIRRWD 345 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~---dg~i~vwd 345 (581)
+..+|++++|+|||++||+++. ||++.||++..+ . . ..+..|. ..+..++|+|| +.+++++. +....+|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~--~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-E--T-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-E--E-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-C--c-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999999999887 999999998643 2 2 3445555 68999999999 77777765 45566665
Q ss_pred cCC---CcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 346 VNS---GECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 346 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
+.. +... .+.... .+...+|+|+++. +++.+.++.+.+||+.+++......... .+++|+|||+++++++.
T Consensus 95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEE
T ss_pred EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEE
Confidence 533 3322 333322 3446688998864 3444455566699999887766654432 78999999999998887
Q ss_pred C----CeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCC--cEEEEEecCCCceeEEEeccccceeE-----
Q 008005 422 E----AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESDPKLVSRYKGHKRARFV----- 489 (581)
Q Consensus 422 d----g~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~----- 489 (581)
+ +.|++||+.++. .....+...+..++|+|||++|+++..++ .|++||+.++ ... .+.++......
T Consensus 170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG-SVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC-CEE-ECCCSCSHHHHHCCSE
T ss_pred cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC-cEE-EccCCCcChhhhhhcc
Confidence 7 789999998877 55556778899999999999999877788 8999999886 444 55555443221
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCC---cEEEecCCc
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDR---TIRIWGLDQ 561 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---~I~iW~~~~ 561 (581)
.....++|+|.++++++.||.+++|++ |+... .+.+.|.+++|+ ++ .++++++.+. .|.+|+..+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC
Confidence 111125899999999999999999999 66554 345778999999 88 6888888774 477777654
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=4.3e-22 Score=226.92 Aligned_cols=284 Identities=13% Similarity=0.070 Sum_probs=226.0
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
...+.+|.+.+.++.|+++ .++++++.|+++.||.+...+. ....+..|. .+..++|+|||++|+++ .++.|.+|
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence 4455899999999999998 6777888889999998764321 223455555 46778999999999887 48899999
Q ss_pred EcCCCcEEEEEec-----------CCCeEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC
Q 008005 345 DVNSGECLHVYEK-----------TGVGLISCGWF-LDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 345 d~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~ 412 (581)
|+..... ..+.. +...+.+++|+ |||+.+++++ ++.|.+|++.++............+..++|+ +
T Consensus 271 d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 271 NPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp CTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred cCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 9955443 34443 23468899999 9999999887 7899999998877666544333378999999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008005 413 GKRIISICREAAIL-LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 413 ~~~l~~~~~dg~i~-i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
|+.++.++.++.+. +||..++. .....+...+..++|+|||++|++++.++.|++||+.++ +......+|.....
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~-- 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMIT-- 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCC--
T ss_pred CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCcc--
Confidence 99999999888899 99998776 333356678999999999999999999999999999887 56666656665533
Q ss_pred EeeecCCCCcEEEEEeCCC----------cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 491 RSCFGGFEQAFIASGSEDS----------QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg----------~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
...++|+|++|++++.++ .|++||+.+++ ...+..|...+.+++|+|+| +.|++++.++...+|+..
T Consensus 425 -~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 425 -DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSS
T ss_pred -ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEEEEEecccCCcCcchh
Confidence 334599999998887654 89999999887 67788888889999999999 688999998888888865
Q ss_pred cc
Q 008005 561 QI 562 (581)
Q Consensus 561 ~~ 562 (581)
..
T Consensus 502 ~~ 503 (1045)
T 1k32_A 502 VL 503 (1045)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=3.9e-22 Score=218.92 Aligned_cols=300 Identities=13% Similarity=0.094 Sum_probs=203.4
Q ss_pred cCCCCCceeeccCCCCcccccccceeecccccC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEEcccCCeee
Q 008005 241 NTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSD---EVWFLQFSHDGKYLASSSKD---------QSAIIWEVKEDGQVS 308 (581)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~g~~lasgs~d---------g~i~iwd~~~~~~~~ 308 (581)
...+..+.+|+... .+....+.+|.. .|.+++|||||++||+++.+ +.+.+||+.++.. .
T Consensus 33 ~~~dg~i~~~d~~~-------g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 104 (723)
T 1xfd_A 33 REQKGTVRLWNVET-------NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q 104 (723)
T ss_dssp CCSSSCEEEBCGGG-------CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E
T ss_pred EeCCCCEEEEECCC-------CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E
Confidence 34455566664322 234456666665 49999999999999999764 7888999987542 2
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE------------------EEEEEecC
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL------------------ISCGWFLD 370 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~ 370 (581)
.+....+|...+..++|||||+.|++++. +.|++||+.+++.......+...+ .+++|+||
T Consensus 105 ~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 105 SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 23333455566899999999999999886 799999999988776665543322 78999999
Q ss_pred CCeEEEEeCCC----------------------------------cEEEEeCCCCeE-EeeccC-----ccccEEEEEEe
Q 008005 371 GGGIFAGMTDK----------------------------------SICLWDLDGREL-ESWKGQ-----KTLRISDMAIT 410 (581)
Q Consensus 371 ~~~l~sg~~dg----------------------------------~i~vwd~~~~~~-~~~~~~-----~~~~i~~i~~~ 410 (581)
|+.|++++.|+ .|++||+.++.. ...... +...+..++|+
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 263 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA 263 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence 99999987553 799999987764 333322 24578999999
Q ss_pred eCCCEEEEEEcC----CeEEEEECCCCeeeE-E--ecCCce----EEEEECCCCCEEEEE--eeCC------cEEEEEec
Q 008005 411 DDGKRIISICRE----AAILLLDREANFERW-I--EEEEVI----TSFSLSKDNKYLLVN--LINQ------EIHLWSIE 471 (581)
Q Consensus 411 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~-~--~~~~~i----~~~~~sp~~~~l~~~--~~d~------~i~iwd~~ 471 (581)
|||+.+++.... ..|++||+.++.... . .+...+ ..++|+|||+.|+.. ..++ .|.+||+.
T Consensus 264 pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 264 TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 999988776543 579999998877322 2 223333 378999999977764 3456 46666622
Q ss_pred CCCc--eeEEEeccccceeEEEeeecCCCCcEEEEEeCC---CcEEEEeCCCCc--eEEEecc---CCCCEEEEEEcCCC
Q 008005 472 SDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYTGE--LVLALAG---HSGSVNCVSWNPAN 541 (581)
Q Consensus 472 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~~~--~~~~~~~---h~~~v~~l~~~p~~ 541 (581)
.... ....+...... ......++|+++.|+..+.+ +.+++|++.... ....+.. |...+..++|+|++
T Consensus 344 ~~~~~~~~~~l~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg 421 (723)
T 1xfd_A 344 PNSSNDNIQSITSGDWD--VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM 421 (723)
T ss_dssp CCSSSCCCCBSCCSSSC--EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred CCCCccceeEeecCCeE--EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence 2212 13333322222 12233458999998766555 789999976432 3344443 67778999999999
Q ss_pred CcEEEEEECC
Q 008005 542 LHMLASASDD 551 (581)
Q Consensus 542 ~~~l~s~s~D 551 (581)
..++++++..
T Consensus 422 ~~l~~~~~~~ 431 (723)
T 1xfd_A 422 DFFLLKCEGP 431 (723)
T ss_dssp SEEEEECCSS
T ss_pred CEEEEEccCC
Confidence 5444444443
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.2e-21 Score=192.20 Aligned_cols=288 Identities=10% Similarity=0.101 Sum_probs=196.9
Q ss_pred CCCCCceeeccCCCCcccccccceeecccccCcEEEEEEcCCCCEEEEEeCC-CeEEEEEccc-CCeeeEEEEecCCCCC
Q 008005 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKD-QSAIIWEVKE-DGQVSLKHRLSGHRKP 319 (581)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~d-g~i~iwd~~~-~~~~~~~~~~~~h~~~ 319 (581)
..+..+.+|.-..... .+.+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++.. .+.......+..+. .
T Consensus 12 ~~~~~v~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGA----LTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp GGGTEEEEEEECTTSC----EEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred CCCCeEEEEEECCCCc----EEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 4456677775422110 112222 3477789999999999999988876 9999999972 23344445555444 7
Q ss_pred EEEEEeCCCCCeEEEeeC-CCcEEEEEcC---CCcEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCC-CeE
Q 008005 320 VFTVSWSPNDHQLLTCGQ-EEAIRRWDVN---SGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG-REL 393 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~ 393 (581)
+.+++|+|++++|++++. ++.|.+||+. +++....+..+ ..+.+++|+|+++.+++++ .++.|.+||+.+ +..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 899999999998877665 8889999994 33444444433 4588899999999888887 899999999976 544
Q ss_pred E-----eeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCC--Cee---eEEe-c------CCceEEEEECCCCCE
Q 008005 394 E-----SWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA--NFE---RWIE-E------EEVITSFSLSKDNKY 455 (581)
Q Consensus 394 ~-----~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~---~~~~-~------~~~i~~~~~sp~~~~ 455 (581)
. .........+..++|+|+++++++++ .++.|.+|++.. +.. .... . ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 3 22223334788999999999876665 789999999954 321 1111 1 234668999999998
Q ss_pred EEEEe-eCCcEEEEEecC--C-CceeEEEeccccceeEEEeeecCCCCcEEEEEe-CCCcEEEEe--CCCCce--EEEec
Q 008005 456 LLVNL-INQEIHLWSIES--D-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQVYIWH--RYTGEL--VLALA 526 (581)
Q Consensus 456 l~~~~-~d~~i~iwd~~~--~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd--~~~~~~--~~~~~ 526 (581)
|+++. .++.|.+||+.. + ...+..+..+.. +..+.++|++++|++++ .++.|.+|+ ..+++. +..+.
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 88655 689999999983 2 133333433332 22344489999888887 689999994 446643 34444
Q ss_pred cCCCCEEEEEEcCCC
Q 008005 527 GHSGSVNCVSWNPAN 541 (581)
Q Consensus 527 ~h~~~v~~l~~~p~~ 541 (581)
. .....+++|.|+.
T Consensus 321 ~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 321 V-GQGPMWVVVNAHE 334 (343)
T ss_dssp C-SSSCCEEEEEEEC
T ss_pred c-CCCCeeEEEEccc
Confidence 3 2446677777654
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5.6e-21 Score=190.09 Aligned_cols=271 Identities=9% Similarity=0.075 Sum_probs=185.6
Q ss_pred CCCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC---CCcEEEEEcCCCc--EEEEEecCCCeEEEE
Q 008005 292 KDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGE--CLHVYEKTGVGLISC 365 (581)
Q Consensus 292 ~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v~~~ 365 (581)
.++.|.+|+++.. +.+..... ..+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..+
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3567888888642 33333332 33456678899999999 555554 6899999998776 334444566778899
Q ss_pred EEecCCCeEEEEe-CCCcEEEEeCC-CCeEEeec---cC--------ccccEEEEEEeeCCCEEEEEEcCCeEEEEECC-
Q 008005 366 GWFLDGGGIFAGM-TDKSICLWDLD-GRELESWK---GQ--------KTLRISDMAITDDGKRIISICREAAILLLDRE- 431 (581)
Q Consensus 366 ~~~~~~~~l~sg~-~dg~i~vwd~~-~~~~~~~~---~~--------~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~- 431 (581)
+|+|++++|++++ .++.|.+|++. .+...... .. ....+.+++|+|+|+.+++...++.|.+|++.
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999999998888 67899999995 33322111 11 11248889999999955555668899999998
Q ss_pred CCeeeE-----EecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCC-ce--eEEEeccccc---eeEEEeeecCCCC
Q 008005 432 ANFERW-----IEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDP-KL--VSRYKGHKRA---RFVIRSCFGGFEQ 499 (581)
Q Consensus 432 ~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~-~~--~~~~~~~~~~---~~~i~~~~~~~~~ 499 (581)
++.... ......+..++|+|||++++++ ..++.|.+|++.... .. ...+...... ......+.++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 443211 1233467889999999977765 457899999998521 22 2222222211 1223445559999
Q ss_pred cEE-EEEeCCCcEEEEeCCC---CceEEEeccCCCCEEEEEEcCCCCcEEEEEEC-CCcEEEe--cCCccccc
Q 008005 500 AFI-ASGSEDSQVYIWHRYT---GELVLALAGHSGSVNCVSWNPANLHMLASASD-DRTIRIW--GLDQINMK 565 (581)
Q Consensus 500 ~~l-~sgs~dg~I~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~iW--~~~~~~~~ 565 (581)
++| ++...++.|.+|++.. .+.+..+..+...+.+++|+|++ ++|++++. ++.|.+| |..++++.
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 977 5556689999999873 24556666677778999999999 56666665 5899999 55566655
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.5e-21 Score=187.22 Aligned_cols=241 Identities=16% Similarity=0.139 Sum_probs=185.2
Q ss_pred EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCc-cccEEEEEEee
Q 008005 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQK-TLRISDMAITD 411 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~-~~~i~~i~~~~ 411 (581)
.++.|+.|++||+.+++... +..|...+.+++|+|+++++++++ ++.|++||+.+ +........+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999888664 456788899999999999999886 78999999988 7666555443 35789999999
Q ss_pred CCCEEEEEEc----CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEE-EEeeCCcEEEEEecCCCceeEEEeccccc
Q 008005 412 DGKRIISICR----EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLL-VNLINQEIHLWSIESDPKLVSRYKGHKRA 486 (581)
Q Consensus 412 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 486 (581)
+++.+++++. ...|..++..++..........+..++|+|++++|+ ++..++.+.+|++.........+..+...
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 174 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGR 174 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCc
Confidence 9999999983 345666666666655555555689999999999887 67789999999986543444555555544
Q ss_pred eeEEEeeecCCCCcEEEEEe-CCCcEEEEeCC-CCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC-----------Cc
Q 008005 487 RFVIRSCFGGFEQAFIASGS-EDSQVYIWHRY-TGELVLALAGHSGSVNCVSWNPANLHMLASASDD-----------RT 553 (581)
Q Consensus 487 ~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D-----------g~ 553 (581)
+....++|++++++.++ .++.+.+|++. .+.....+..|...+.+++|+|++ .+|++++.+ +.
T Consensus 175 ---~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 175 ---NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp ---EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEE
T ss_pred ---cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceE
Confidence 34445589999887666 58999999876 566677888888899999999999 677777765 56
Q ss_pred EEEecCCcccccc-------ccCCCceEEecCCC
Q 008005 554 IRIWGLDQINMKH-------RDQSNGIVHHCNGR 580 (581)
Q Consensus 554 I~iW~~~~~~~~~-------~~~~~~~~~~~~G~ 580 (581)
|.+||+.+++... ......+.|+|||+
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 284 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD 284 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCC
Confidence 9999998876532 22466788999886
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=4.2e-21 Score=191.21 Aligned_cols=259 Identities=12% Similarity=0.133 Sum_probs=197.4
Q ss_pred CCEEEEEeCCCCCeEEEeeC-------CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEE-eCCCcEEEEeCC
Q 008005 318 KPVFTVSWSPNDHQLLTCGQ-------EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAG-MTDKSICLWDLD 389 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~ 389 (581)
..+..++|+|+++++++++. ++.|.+||..+++.+..+.... .+..++|+|+++.++++ ..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45789999999998888774 5689999999999888886543 46789999999966655 457999999998
Q ss_pred CCeEEeeccCccc---------cEEEEEEeeCCCEEEEEE--cCCeEEEEECCCCe-eeEEe-cCCceEEEEECCCCCEE
Q 008005 390 GRELESWKGQKTL---------RISDMAITDDGKRIISIC--REAAILLLDREANF-ERWIE-EEEVITSFSLSKDNKYL 456 (581)
Q Consensus 390 ~~~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~sp~~~~l 456 (581)
+++.......+.. .+.+++|+|+++.+++++ .++.|.+||..+.. ..... ....+..++|+|+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 8776444333211 278899999999888776 47899999999887 33333 45568899999999999
Q ss_pred EEEeeCCcEEEEEecCCCceeEEEecccc-ceeEEEeeecCCCCcEEEEEeC-CCcEEEEeCCCCceEEEeccCCCCEEE
Q 008005 457 LVNLINQEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRYTGELVLALAGHSGSVNC 534 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~h~~~v~~ 534 (581)
+++..++.|.+||+.++ +....+..... .......+.++|+++++++++. ++.|++||..+++.+..+..+. ..+
T Consensus 200 ~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 200 YTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999887 55555554211 1222333444889987766665 4899999999999888877544 267
Q ss_pred EEEcCCCCcEEEEEECCCcEEEecCCcccccccc----CCCceEEecCCC
Q 008005 535 VSWNPANLHMLASASDDRTIRIWGLDQINMKHRD----QSNGIVHHCNGR 580 (581)
Q Consensus 535 l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~----~~~~~~~~~~G~ 580 (581)
++|+|++..++++...++.|.+||+.+++..... ...++.+++||+
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGK 326 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCC
Confidence 9999999445566667999999999988765433 356778888886
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=2.4e-21 Score=195.86 Aligned_cols=294 Identities=14% Similarity=0.070 Sum_probs=203.4
Q ss_pred cceeecccccCcEEE-----EEEcCCCCEEEEEeC-CCe--EEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEE
Q 008005 263 QTLQILEAHSDEVWF-----LQFSHDGKYLASSSK-DQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~-----l~~s~~g~~lasgs~-dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s 334 (581)
..+..+..|...+.. .+|||||++|+.++. ++. |.+||+.++ .......++...+..+.|+||++.|+.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 345667777766666 889999999998887 664 777888765 334444556555557889999999999
Q ss_pred eeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEE--ecCCCeEEEE----------------------eCCCcEEEEeCCC
Q 008005 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGW--FLDGGGIFAG----------------------MTDKSICLWDLDG 390 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg----------------------~~dg~i~vwd~~~ 390 (581)
++.++.|++||+.+++....+..+...+....| ++++..++.. ..+..|.+||+.+
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999999999987777776665544444 7888887743 2446899999988
Q ss_pred CeEEeeccCccccEEEEEEee-CCCEEEEEEcC------CeEEEEECCCCeee-EEecC--CceEEEEECCCCCEEEEEe
Q 008005 391 RELESWKGQKTLRISDMAITD-DGKRIISICRE------AAILLLDREANFER-WIEEE--EVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 391 ~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~-~~~~~--~~i~~~~~sp~~~~l~~~~ 460 (581)
++........ ..+..++|+| ||+.++.+..+ ..|.++|..+.... ...+. ..+....|+|||+.|+..+
T Consensus 178 g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 178 GESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred CceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence 8766655433 3689999999 99999887763 37888998776533 33333 2577889999999876654
Q ss_pred e-CC----cEEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEE---------eCCCcEEEEeCCCCceEEEe
Q 008005 461 I-NQ----EIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASG---------SEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 461 ~-d~----~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg---------s~dg~I~iwd~~~~~~~~~~ 525 (581)
. ++ .|++||+.++.. .+..+.++...........++|+|+.|+.. ..+..|++||+.+++. ..+
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 335 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRV 335 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEe
Confidence 4 22 399999988632 222222211000000001247888877754 4566899999988765 445
Q ss_pred ccCCC-----------CEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 526 AGHSG-----------SVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 526 ~~h~~-----------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..|.. .+.+++|+|+|..+++++..+|...||.++-
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 55555 5788999999954444555678877876653
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=7.2e-21 Score=187.85 Aligned_cols=252 Identities=8% Similarity=-0.022 Sum_probs=183.0
Q ss_pred EeCCCCCe-EEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeE-EeeccCc
Q 008005 324 SWSPNDHQ-LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGREL-ESWKGQK 400 (581)
Q Consensus 324 ~~sp~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~-~~~~~~~ 400 (581)
.|.+++.+ +++++.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||+.++.. ......+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555554 7777889999999999999988888776677 9999999997777666 88999999988775 4444444
Q ss_pred cccEEEEEEeeCCCEEEEEEcCC---eEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEee-CCc-EEEEEecCCC
Q 008005 401 TLRISDMAITDDGKRIISICREA---AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQE-IHLWSIESDP 474 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~-i~iwd~~~~~ 474 (581)
..+..+++|+|++++++++..++ .|.+||..++. .........+.+++|+|+|++++++.. ++. |.+|++....
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 43444499999999999555553 89999999877 445556667899999999987766654 478 9999998653
Q ss_pred ceeEE---EeccccceeEEEeeecCCCCcEEEE-EeCCCcEEEEeCCCCce---EEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 475 KLVSR---YKGHKRARFVIRSCFGGFEQAFIAS-GSEDSQVYIWHRYTGEL---VLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 475 ~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s-gs~dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
..... ....... ...+.++|+|++++. +..++.|++||+.+++. +..+..+ ..+.+++|+|+|..++++
T Consensus 163 ~~~~~~~~~~~~~~~---~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 163 VLFDTGQEFISGGTR---PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp CEEEEEEEEECSSSS---EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEE
T ss_pred cEeecCCccccCCCC---ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEE
Confidence 33211 1111112 234445899986554 45688999999999988 7777644 667899999999434455
Q ss_pred EECCCcEEEecCCcccc------ccc--------cCCCceEEecCCC
Q 008005 548 ASDDRTIRIWGLDQINM------KHR--------DQSNGIVHHCNGR 580 (581)
Q Consensus 548 ~s~Dg~I~iW~~~~~~~------~~~--------~~~~~~~~~~~G~ 580 (581)
...++.|.+||+.++++ ... ...+.+.++|||+
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 55688999999998876 111 1124478999986
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=7.8e-21 Score=188.83 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=186.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEeCCCCCeEE-EeeCCCcEEEEEcCCCcEEEE
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~ 354 (581)
.+++++++.++++++.++.|.+||..++ +....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4567889999999999999999999865 3344444332 2578999999998665 555689999999999998877
Q ss_pred EecCC------CeEEEEEEecCCCeEEEEeCC------------CcEEEEeCCCCeEE---eeccCccccEEEEEEeeCC
Q 008005 355 YEKTG------VGLISCGWFLDGGGIFAGMTD------------KSICLWDLDGRELE---SWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 355 ~~~~~------~~v~~~~~~~~~~~l~sg~~d------------g~i~vwd~~~~~~~---~~~~~~~~~i~~i~~~~~~ 413 (581)
+.... ..+.+++|+|+++++++++.+ +.|.+||+.++... ...... ..+.+++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCC
Confidence 76432 236789999999999998865 89999999763321 111222 258889999999
Q ss_pred CEEEEEEcCCeEEEEECCCCee-eEEecCC-------------------------ceEEEEECCCCCEE-----------
Q 008005 414 KRIISICREAAILLLDREANFE-RWIEEEE-------------------------VITSFSLSKDNKYL----------- 456 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-------------------------~i~~~~~sp~~~~l----------- 456 (581)
+ +++++ +.|.+||..++.. ....... ....+++++++...
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 65543 4499999988762 2222221 34456666554211
Q ss_pred EEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEE
Q 008005 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCV 535 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l 535 (581)
.....++.+.+|++. .+... .....++| ++++++++ ++.|++||+.+++.+..+... ..+.++
T Consensus 237 ~~~~~~~~~~~~~~~----------~~~~~---~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 300 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFA----------DLTEL---YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCV 300 (349)
T ss_dssp EEETTTCCEEEEEEE----------ECSSC---EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred EEeccCCcEEecccc----------cCCCc---ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccce
Confidence 122223344444432 11122 22333488 99999888 889999999999988877643 457899
Q ss_pred EEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 536 SWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+|+|++ ..|++++.++.|++||+.+++......
T Consensus 301 ~~s~dg-~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 301 AFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EECSSS-SCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EECCCC-CEEEEecCCCeEEEEeccccceeeeee
Confidence 999999 566778889999999999887665443
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3.8e-20 Score=189.27 Aligned_cols=201 Identities=10% Similarity=0.071 Sum_probs=154.9
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCe--------eeEE----EEecCCCCCEEEEEeCCCCCeEE----Ee
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--------VSLK----HRLSGHRKPVFTVSWSPNDHQLL----TC 335 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~--------~~~~----~~~~~h~~~V~~l~~sp~~~~l~----s~ 335 (581)
...+..+++++++.++++++.|+ ++||+...... .... .....|...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44678999999999999999888 89988642100 0000 01123567899999999999999 78
Q ss_pred eCCCcEEEEEcCCC--------c---EEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEeeccCcccc
Q 008005 336 GQEEAIRRWDVNSG--------E---CLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLR 403 (581)
Q Consensus 336 ~~dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~ 403 (581)
+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +..|++++.||+|++||++++........+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998764 2 24555678899999999997 788999999999999999887655444455668
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee-EEec-------CCceEEEEECCCCCEEEEEee-CC------cEEEE
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANFER-WIEE-------EEVITSFSLSKDNKYLLVNLI-NQ------EIHLW 468 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-------~~~i~~~~~sp~~~~l~~~~~-d~------~i~iw 468 (581)
|.+++|+|+|++|++++.||.|++||.+..... ...+ ...+.+++|++++.++++.+. +| .+++|
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999999833222 2111 237899999998887765443 32 38999
Q ss_pred EecCC
Q 008005 469 SIESD 473 (581)
Q Consensus 469 d~~~~ 473 (581)
+++..
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99864
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=5.3e-19 Score=176.85 Aligned_cols=276 Identities=12% Similarity=0.083 Sum_probs=186.7
Q ss_pred CCEEEEEe----CCCeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC----CcEEEEEcCC--CcE-
Q 008005 284 GKYLASSS----KDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNS--GEC- 351 (581)
Q Consensus 284 g~~lasgs----~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d----g~i~vwd~~~--~~~- 351 (581)
..+++.|+ .++.|.+|+++.. +.+...... +...+..++|+||+++|++++.+ +.|.+|++.. ++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 33555553 4578999988642 344444444 66778889999999999999886 7999998875 443
Q ss_pred -EEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCC-CeEEeec-----c--------CccccEEEEEEeeCCCE
Q 008005 352 -LHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG-RELESWK-----G--------QKTLRISDMAITDDGKR 415 (581)
Q Consensus 352 -~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~~~~~-----~--------~~~~~i~~i~~~~~~~~ 415 (581)
+.....+......+++ +++++++++ .++.|.+|++.. +.+.... . .....+.+++|+|+|++
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3333334556667777 788877776 578999999964 2221110 0 11224588999999997
Q ss_pred EEEEEc-CCeEEEEECCCCe---------------eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCce--
Q 008005 416 IISICR-EAAILLLDREANF---------------ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKL-- 476 (581)
Q Consensus 416 l~~~~~-dg~i~i~d~~~~~---------------~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~-- 476 (581)
+++++. ++.|.+|++.... .........+..++|+|+|++++++. .++.|.+||+.++ ..
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~~ 247 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLDE 247 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceEE
Confidence 776664 7899999876432 11223455678999999999888877 5899999999865 32
Q ss_pred eEEEeccccceeEEEeeecCCCCcEEEEEeCC--CcEEEEeCC--CCc--eEEEeccCCCCEEEEEEcCCCCcEEEEEE-
Q 008005 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSED--SQVYIWHRY--TGE--LVLALAGHSGSVNCVSWNPANLHMLASAS- 549 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d--g~I~iwd~~--~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s~s- 549 (581)
+..+............+.++|+|++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|++ ++|++++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~ 325 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACR 325 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEET
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEEEC
Confidence 22232222211112344459999998776654 899999985 454 3444544 5578899999999 5666666
Q ss_pred CCCcEEEecC--Ccccccc
Q 008005 550 DDRTIRIWGL--DQINMKH 566 (581)
Q Consensus 550 ~Dg~I~iW~~--~~~~~~~ 566 (581)
.++.|.+|++ .++++..
T Consensus 326 ~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 326 DTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp TTTEEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEEECCCCcEee
Confidence 7799999654 4666543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=3.1e-19 Score=178.50 Aligned_cols=262 Identities=15% Similarity=0.148 Sum_probs=183.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCC----CeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCcEEEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKD----QSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRW 344 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i~vw 344 (581)
|...+..++|+|||++|++++.+ +.|.+|++... +.+..+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67788889999999999999876 79999999864 555556666656667788888 788777776 57899999
Q ss_pred EcCCCcEEEE----E--ec--------CCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCe-------E------Eee
Q 008005 345 DVNSGECLHV----Y--EK--------TGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRE-------L------ESW 396 (581)
Q Consensus 345 d~~~~~~~~~----~--~~--------~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~-------~------~~~ 396 (581)
++.....+.. . .+ +...+.+++|+|+++++++++ .++.|.+|+++... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432211 1 11 122357899999999776665 47899999886422 1 122
Q ss_pred ccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeEE---e----cCCceEEEEECCCCCEEEEEeeC--CcEE
Q 008005 397 KGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWI---E----EEEVITSFSLSKDNKYLLVNLIN--QEIH 466 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---~----~~~~i~~~~~sp~~~~l~~~~~d--~~i~ 466 (581)
.......+..++|+|+|+++++++ .++.|.+|++.++..... . +...+..++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233344688999999999888877 689999999986652111 1 12346799999999999877765 8999
Q ss_pred EEEecC--CC-ceeEEEeccccceeEEEeeecCCCCcEEEEEe-CCCcEEEE--eCCCCceEEEe-ccCCCCEEEEEEc
Q 008005 467 LWSIES--DP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-EDSQVYIW--HRYTGELVLAL-AGHSGSVNCVSWN 538 (581)
Q Consensus 467 iwd~~~--~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iw--d~~~~~~~~~~-~~h~~~v~~l~~~ 538 (581)
+|++.. +. ..+..+.. ... ...+.++|+|++|++++ .++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~---~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIH---PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSC---CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCC---CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 21 13333333 112 22334489999888887 57899996 55577765543 2345678999886
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=210.73 Aligned_cols=276 Identities=10% Similarity=0.067 Sum_probs=190.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC---CEEEEEeCCCCCeEEEeeC---------CCcEEEE
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQ---------EEAIRRW 344 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~---------dg~i~vw 344 (581)
+++|+|||++++++ .|++|++||+.++.. ...+.+|.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 67899999766554 699999999987642 333443432 4899999999999998876 7899999
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-Ccccc-----------------EEE
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLR-----------------ISD 406 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~~~~-----------------i~~ 406 (581)
|+.+++.+... .....+..++|+|||+.|+++. ++.|++||+.++....... .+... ..+
T Consensus 96 d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 96 DLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 99998762111 1124678899999999999885 7899999998776554432 21111 248
Q ss_pred EEEeeCCCEEEEEEcCC----------------------------------eEEEEECCCCee----eE------EecCC
Q 008005 407 MAITDDGKRIISICREA----------------------------------AILLLDREANFE----RW------IEEEE 442 (581)
Q Consensus 407 i~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~----~~------~~~~~ 442 (581)
++|+|||+.|++++.|. .|++||+.++.. .. ..+..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999987652 788999988763 11 13566
Q ss_pred ceEEEEECCCCCEEEEEeeCC----cEEEEE----ecCCCceeEEE----eccccceeE--EEeeecCCCCcEEEE--Ee
Q 008005 443 VITSFSLSKDNKYLLVNLINQ----EIHLWS----IESDPKLVSRY----KGHKRARFV--IRSCFGGFEQAFIAS--GS 506 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~~d~----~i~iwd----~~~~~~~~~~~----~~~~~~~~~--i~~~~~~~~~~~l~s--gs 506 (581)
.+.+++|+||++++++....+ .|.+|| ..++ +....+ .++...+.. .....++|+|+.++. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 789999999987776654432 488889 6554 332222 233332210 002344899985543 44
Q ss_pred CCC--cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC----CCcEEEecCCc
Q 008005 507 EDS--QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD----DRTIRIWGLDQ 561 (581)
Q Consensus 507 ~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~----Dg~I~iW~~~~ 561 (581)
.+| .|++||+.+++ ...+..+...+..+.+. ++..+++++.. ++.+++|.+..
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 555 67888887776 45666666778888777 77444444444 48899998764
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=7.7e-20 Score=180.60 Aligned_cols=271 Identities=11% Similarity=0.104 Sum_probs=194.2
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecc-cccC-cEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCeeeEEEEec-
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSD-EVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLS- 314 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~h~~-~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~- 314 (581)
+....+..+.+|+... .+.+..+. ++.. .+.+++|+|+|+++ ++++.++.|.+||+.++... ..+.
T Consensus 5 v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---~~~~~ 74 (337)
T 1pby_B 5 LAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---GRIDL 74 (337)
T ss_dssp EEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---EEEEC
T ss_pred EEcCCCCeEEEEECCC-------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---eeEEc
Confidence 3444556677775432 22344443 2222 47889999999865 45566789999999876432 2222
Q ss_pred CC----CCCEEEEEeCCCCCeEEEee------------CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe
Q 008005 315 GH----RKPVFTVSWSPNDHQLLTCG------------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 315 ~h----~~~V~~l~~sp~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
++ ...+.+++|+|+++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence 11 12567899999999998886 579999999999988877765 4457788999999988888
Q ss_pred CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC------------------------eEEEEECCCCe
Q 008005 379 TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA------------------------AILLLDREANF 434 (581)
Q Consensus 379 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~ 434 (581)
++.|.+||+.+++......... ....+.|+|++..++..+..+ .|.+||..++.
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred -CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6899999998877654443322 011337889888765544322 47899998876
Q ss_pred ee---EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcE
Q 008005 435 ER---WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 435 ~~---~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
.. ...+...+.+++|+|++++++++ ++.|.+||+.+. +.+..+...... ..+.++|+++++++++.++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHSY----YSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSCC----CEEEECTTSCEEEEESBSSEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCce----eeEEECCCCCEEEEEcCCCcE
Confidence 32 33455678899999999999988 799999999886 566665543322 233448999999999999999
Q ss_pred EEEeCCCCceEEEeccCCC
Q 008005 512 YIWHRYTGELVLALAGHSG 530 (581)
Q Consensus 512 ~iwd~~~~~~~~~~~~h~~ 530 (581)
++||+.+++.+..+..+.+
T Consensus 304 ~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 304 AAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEETTTCCEEEEEECGGG
T ss_pred EEEECcCCcEEEEEEcCCC
Confidence 9999999999888876543
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=7.7e-19 Score=174.58 Aligned_cols=248 Identities=11% Similarity=0.152 Sum_probs=172.9
Q ss_pred cccCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCcEEEEE
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWD 345 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i~vwd 345 (581)
.+...+..++|+|||+ |++++. ++.|.+|++.+ +.......+..+...+..++|+||+++|++++ .++.|.+|+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4557788899999999 555543 68999999964 44445555566777889999999999888887 678999999
Q ss_pred cC-CCc--EEEEEecC---------CCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-CCeEEee---ccCccccEEEEEE
Q 008005 346 VN-SGE--CLHVYEKT---------GVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESW---KGQKTLRISDMAI 409 (581)
Q Consensus 346 ~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~---~~~~~~~i~~i~~ 409 (581)
+. ++. .+..+... ...+.+++|+|+++.+++...++.|.+|++. ++.+... .......+..++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 96 333 23333221 1247889999999955556668899999997 4544322 2222336788999
Q ss_pred eeCCCEEEEE-EcCCeEEEEECCC--CeeeE---E-ecC------CceEEEEECCCCCEEEEEe-eCCcEEEEEecCCC-
Q 008005 410 TDDGKRIISI-CREAAILLLDREA--NFERW---I-EEE------EVITSFSLSKDNKYLLVNL-INQEIHLWSIESDP- 474 (581)
Q Consensus 410 ~~~~~~l~~~-~~dg~i~i~d~~~--~~~~~---~-~~~------~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~- 474 (581)
+|||++++++ ..++.|.+|++.. +.... . ... ..+..++|+|||++|+++. .++.|.+|++....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9999977665 5678999999874 33111 1 111 4588899999999886554 48999999997321
Q ss_pred -ceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-CcEEEE--eCCCCceE
Q 008005 475 -KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-SQVYIW--HRYTGELV 522 (581)
Q Consensus 475 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-g~I~iw--d~~~~~~~ 522 (581)
..+..+..+..... .+.++|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~---~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPR---DFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCC---EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcC---eEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 33444444333222 23348999988888765 899999 55667654
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=4.2e-20 Score=197.35 Aligned_cols=247 Identities=11% Similarity=0.079 Sum_probs=181.4
Q ss_pred CCCEEEEEeCCCCCeEEEeeC-CCcEEEEEcCCCcEEEEEecCC-CeEEEEEEecCCCeEEEEeC---CCcEEE--EeC-
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMT---DKSICL--WDL- 388 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~---dg~i~v--wd~- 388 (581)
..+|++++|+|||++||+++. ||+++||++.+++... +..+. ..+..+.|+|| +.+++++. +....+ ++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997666544 44444 68999999999 67777665 444455 455
Q ss_pred -CCCeEEeeccCccccEEEEEEeeCCCE-EEEEEcCCeEEEEECCCCee-eEEecCCceEEEEECCCCCEEEEEeeC---
Q 008005 389 -DGRELESWKGQKTLRISDMAITDDGKR-IISICREAAILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLIN--- 462 (581)
Q Consensus 389 -~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d--- 462 (581)
.+... ...... .+...+|+|+++. +++.+.++.+.+||+.++.. ....+.. .+++|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCC
Confidence 43333 333332 3446788998864 33444555566999988873 3333333 889999999999988877
Q ss_pred -CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC--cEEEEeCCCCceEEEeccCCCCEEEEE---
Q 008005 463 -QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--QVYIWHRYTGELVLALAGHSGSVNCVS--- 536 (581)
Q Consensus 463 -~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~--- 536 (581)
+.|++||+.++ + ...+..+... +....++|+|++|+++..++ .|++||+.+++.. .+.+|...+.+++
T Consensus 174 ~~~i~~~d~~~g-~-~~~l~~~~~~---~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 174 RVSLFTSNLSSG-G-LRVFDSGEGS---FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp EEEEEEEETTTC-C-CEEECCSSCE---EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CeEEEEEcCCCC-C-ceEeecCCCc---cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 78999998876 3 3456666554 34445599999999888888 8999999999888 7888887777777
Q ss_pred -----EcCCCCcEEEEEECCCcEEEecCCccccccc--cCCCceEEecCCC
Q 008005 537 -----WNPANLHMLASASDDRTIRIWGLDQINMKHR--DQSNGIVHHCNGR 580 (581)
Q Consensus 537 -----~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~--~~~~~~~~~~~G~ 580 (581)
|+||| .++++++.||++++|++ ++.... .....+.++ ||+
T Consensus 248 ~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 248 ITWLGYLPDG-RLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGK 294 (582)
T ss_dssp EEEEEECTTS-CEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTE
T ss_pred ccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCE
Confidence 99999 89999999999999999 444321 112345555 654
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=9.5e-19 Score=178.91 Aligned_cols=202 Identities=13% Similarity=0.147 Sum_probs=151.3
Q ss_pred cccCcEEEEEEcCCCCEEE----EEeCCCeEEEEEcccC--------CeeeEEEEecCCCCCEEEEEeCCC-CCeEEEee
Q 008005 270 AHSDEVWFLQFSHDGKYLA----SSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCG 336 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~la----sgs~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~ 336 (581)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.+. ..+.....+.+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3677899999999999999 7889999999998754 222345667889999999999997 78999999
Q ss_pred CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC------ccccEEEEEEe
Q 008005 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ------KTLRISDMAIT 410 (581)
Q Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------~~~~i~~i~~~ 410 (581)
.||+|++||++++........|...|.+++|+|++++|++|+.||.|++||++.........+ +...+.+++|+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEe
Confidence 999999999999987777777888999999999999999999999999999984333322211 22379999999
Q ss_pred eCCCEEEEEE-cCC------eEEEEECCCCe----eeEEec----------CCceEEEEECCCCCEEEEEee-CCcEEEE
Q 008005 411 DDGKRIISIC-REA------AILLLDREANF----ERWIEE----------EEVITSFSLSKDNKYLLVNLI-NQEIHLW 468 (581)
Q Consensus 411 ~~~~~l~~~~-~dg------~i~i~d~~~~~----~~~~~~----------~~~i~~~~~sp~~~~l~~~~~-d~~i~iw 468 (581)
+++.++++.+ .+| .+++|++.... ..+... ..+...+.+-++.+++++++. .+.|.++
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 9887776543 333 38999988652 122211 112223333466677666654 4456666
Q ss_pred Eec
Q 008005 469 SIE 471 (581)
Q Consensus 469 d~~ 471 (581)
...
T Consensus 330 ~~~ 332 (434)
T 2oit_A 330 ARQ 332 (434)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.8e-19 Score=197.51 Aligned_cols=308 Identities=11% Similarity=0.058 Sum_probs=201.5
Q ss_pred eccCCCCCceeeccCCCCcccccccceeecccccC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEEcccCCe
Q 008005 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSD---EVWFLQFSHDGKYLASSSK---------DQSAIIWEVKEDGQ 306 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~g~~lasgs~---------dg~i~iwd~~~~~~ 306 (581)
+....+..+.+|+... .++...+.+|.. .|.+++|||||++||+++. ++.|++||+.++..
T Consensus 30 ~~~~~d~~i~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 30 LHQSADNNIVLYNIET-------GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp EEECTTSCEEEEESSS-------CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEcCC-------CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 3333455666665332 223445555544 4899999999999998876 78999999986522
Q ss_pred eeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE-ecCCCeE-----------------EEEEEe
Q 008005 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-EKTGVGL-----------------ISCGWF 368 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~ 368 (581)
.. ...+ ...+..++|||||+.|+++. ++.|++||+.+++..... .++...+ .+++|+
T Consensus 103 ~~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 103 VR-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp CC-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred cc-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 00 0111 35688999999999999986 789999999988765433 2222222 479999
Q ss_pred cCCCeEEEEeCCC----------------------------------cEEEEeCCCCeEE---ee-----ccCccccEEE
Q 008005 369 LDGGGIFAGMTDK----------------------------------SICLWDLDGRELE---SW-----KGQKTLRISD 406 (581)
Q Consensus 369 ~~~~~l~sg~~dg----------------------------------~i~vwd~~~~~~~---~~-----~~~~~~~i~~ 406 (581)
|||+.|++++.|. .|++||+.++... .. ...+...+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999999987652 7889999876542 21 1234557899
Q ss_pred EEEeeCCCEEEEEEcC----CeEEEEE----CCCCe-eeE-----EecCCceE-----EEEECCCCCEEEE--EeeCC--
Q 008005 407 MAITDDGKRIISICRE----AAILLLD----REANF-ERW-----IEEEEVIT-----SFSLSKDNKYLLV--NLINQ-- 463 (581)
Q Consensus 407 i~~~~~~~~l~~~~~d----g~i~i~d----~~~~~-~~~-----~~~~~~i~-----~~~~sp~~~~l~~--~~~d~-- 463 (581)
++|+||++.+++.... ..|.+|| ..++. ... ..+...+. .+.|+|||+.++. ...++
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 9999998766664432 2488899 77665 211 23455565 7899999996655 33455
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC-----CCcEEEEeCCC--Cc-eEEEec----cCCCC
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-----DSQVYIWHRYT--GE-LVLALA----GHSGS 531 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-----dg~I~iwd~~~--~~-~~~~~~----~h~~~ 531 (581)
.|.+||+.++ . ...+..+...+. ...++ +++.|+..+. ++.+++|.+.. +. ....+. +|...
T Consensus 338 ~l~~~~~~~~-~-~~~lt~~~~~v~--~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~ 411 (719)
T 1z68_A 338 HIHYIKDTVE-N-AIQITSGKWEAI--NIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQ 411 (719)
T ss_dssp EEEEESSCST-T-CEECSCSSSCEE--EEEEE--CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBC
T ss_pred EEEEEECCCC-c-eEecccCceEEE--EEEEE--eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCc
Confidence 4666676654 2 444544433322 23343 5555555554 47888887653 42 123333 26677
Q ss_pred EEEEEEcCCCCcEEEEEECC--CcEEEecCCcccc
Q 008005 532 VNCVSWNPANLHMLASASDD--RTIRIWGLDQINM 564 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~D--g~I~iW~~~~~~~ 564 (581)
+..+.|+|++..++++++.+ ..+.+|++.+++.
T Consensus 412 ~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 412 YYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp BEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred eEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 88999999995555566554 4788999877653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=1.4e-18 Score=174.02 Aligned_cols=277 Identities=10% Similarity=0.091 Sum_probs=185.6
Q ss_pred EEEEEeCC--CeEEEEEccc-CCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC-CCcEEEEEecC-C
Q 008005 286 YLASSSKD--QSAIIWEVKE-DGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKT-G 359 (581)
Q Consensus 286 ~lasgs~d--g~i~iwd~~~-~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~-~ 359 (581)
+++.|+.. +.|.+|+++. .+.+....... .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555543 5688887753 23443333322 344568899999999999999888 99999997 78765443321 1
Q ss_pred CeEEEEEEecCCCe--EEEEe-------------CCCcEEEEeCC-CCeEEeecc----CccccEEEEEEeeCCCEEEEE
Q 008005 360 VGLISCGWFLDGGG--IFAGM-------------TDKSICLWDLD-GRELESWKG----QKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 360 ~~v~~~~~~~~~~~--l~sg~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~ 419 (581)
..+.+++|+|++++ ++++. .+|.+.+|+++ .+.+..... .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23456889999985 44553 68999999996 344332111 233478999999999998877
Q ss_pred Ec-CCeEEEEECC-CCeee---EEe---cCCceEEEEECCCCCEEEEEee-CCcEEEEEecCC-Ccee---EEEeccc--
Q 008005 420 CR-EAAILLLDRE-ANFER---WIE---EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESD-PKLV---SRYKGHK-- 484 (581)
Q Consensus 420 ~~-dg~i~i~d~~-~~~~~---~~~---~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~-~~~~---~~~~~~~-- 484 (581)
+. ++.|++||+. ++... ... +...+..++|+|+|++++++.. ++.|.+|++... .+.. ..+....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6899999998 55522 122 2556899999999999988775 689999988631 1321 1222111
Q ss_pred --cce-------eEEEeeecCCCCcEEEEEeCCC------cEEEEeCC-CCceEE---EeccCCCCEEEEEEcC---CCC
Q 008005 485 --RAR-------FVIRSCFGGFEQAFIASGSEDS------QVYIWHRY-TGELVL---ALAGHSGSVNCVSWNP---ANL 542 (581)
Q Consensus 485 --~~~-------~~i~~~~~~~~~~~l~sgs~dg------~I~iwd~~-~~~~~~---~~~~h~~~v~~l~~~p---~~~ 542 (581)
... ......+++|+|++|++++.+. .|.+|++. +++... ....+...+..++|+| +|
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg- 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD- 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-
Confidence 101 2223332699999888776432 89999986 666543 2334555677899999 78
Q ss_pred cEEEEEEC-CCcEEEecCCcccc
Q 008005 543 HMLASASD-DRTIRIWGLDQINM 564 (581)
Q Consensus 543 ~~l~s~s~-Dg~I~iW~~~~~~~ 564 (581)
++|++++. ++.|.+|+++...+
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeEEEEEEchhhC
Confidence 67887776 48999999976543
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=4.9e-19 Score=194.30 Aligned_cols=298 Identities=9% Similarity=0.022 Sum_probs=199.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCC-----EEEEEeCCCCCeEEEeeCC---------C
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP-----VFTVSWSPNDHQLLTCGQE---------E 339 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~l~s~~~d---------g 339 (581)
...+++|+|||++++++ |++|++||+.++.. ...+.+|... ...++|||||++|+.++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 35589999999999886 99999999987743 3445666532 2447899999999998876 5
Q ss_pred cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-cccE--------------
Q 008005 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRI-------------- 404 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~~i-------------- 404 (581)
.+.+||+.+++.. .+..+...+...+|+|||+.|+.+ .++.|++||+.++....+.... ...+
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 6779999998854 355666789999999999999988 4689999999877655443221 1112
Q ss_pred ---EEEEEeeCCCEEEEEEcCC------------------------------------eEEEEECCC---C---eeeEEe
Q 008005 405 ---SDMAITDDGKRIISICREA------------------------------------AILLLDREA---N---FERWIE 439 (581)
Q Consensus 405 ---~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~---~~~~~~ 439 (581)
..+.|+|||+.|+.++.|. .|++||+.+ + ......
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 3589999999999875321 588899988 6 322221
Q ss_pred -------cCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCCCc-----eeEEE--eccccceeE--EEeeecCCCC
Q 008005 440 -------EEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESDPK-----LVSRY--KGHKRARFV--IRSCFGGFEQ 499 (581)
Q Consensus 440 -------~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~-----~~~~~--~~~~~~~~~--i~~~~~~~~~ 499 (581)
+...+..++|+|||+.++.....+ .|.+||+.++.. .+..+ ..+...+.. .....++|+|
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 566789999999999777665433 699999988730 11112 233322110 1123348999
Q ss_pred cEEE-EEeC-CC--cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC----CCcEEE--ecCCccccc---c
Q 008005 500 AFIA-SGSE-DS--QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD----DRTIRI--WGLDQINMK---H 566 (581)
Q Consensus 500 ~~l~-sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~----Dg~I~i--W~~~~~~~~---~ 566 (581)
+.++ ..+. +| .|++||..+++... +......|..+.+ +++..++++++. .+...| .++..+... .
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt 408 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence 9776 6654 44 78899988766554 4444556666543 345355556554 233444 455444321 1
Q ss_pred ------ccCCCceEEecCCC
Q 008005 567 ------RDQSNGIVHHCNGR 580 (581)
Q Consensus 567 ------~~~~~~~~~~~~G~ 580 (581)
......+.|++||+
T Consensus 409 ~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 409 CELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp TTTSTTTBCBEEEEECTTSS
T ss_pred cccCCCCCceEEEEECCCCC
Confidence 12345678888886
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.3e-19 Score=183.38 Aligned_cols=273 Identities=14% Similarity=0.055 Sum_probs=184.9
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CeEEEEEcccCCeeeEEEEecCCCCC-EEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 274 EVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
.+.+++|||||++|+.+... ..|.+|++.++. .. .+..+... ...+.|+|||++|+.++.++.|.+||+.++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AV-QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EE-ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EE-EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 37788999999998877543 468888887542 22 23333333 334789999999999999999999999998
Q ss_pred cEEEEEecCCCeEEE-------------------EEEecCCCeEEEE-----eCCCcEEEEeCCCCeEEeeccCccccEE
Q 008005 350 ECLHVYEKTGVGLIS-------------------CGWFLDGGGIFAG-----MTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 405 (581)
+.......+...... +.|+|+++.++.+ ..+..|++||+.+++...... +...+.
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~ 191 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DTAWLG 191 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ESSCEE
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CCcccc
Confidence 876666544443222 3456777766554 356789999998877655543 334789
Q ss_pred EEEEee-CCCEEEEEEcC------CeEEEEECCCCeeeE-Eec--CCceEEEEECCCCCEEEEEeeC-----CcEEEEEe
Q 008005 406 DMAITD-DGKRIISICRE------AAILLLDREANFERW-IEE--EEVITSFSLSKDNKYLLVNLIN-----QEIHLWSI 470 (581)
Q Consensus 406 ~i~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~--~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~ 470 (581)
.+.|+| +++.++.++.+ ..|.+||..+..... ..+ ...+..+.|+|+|++|+.++.+ +.|++||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 999999 78877776643 468999987765222 222 2357889999999988777654 44999999
Q ss_pred cCCCceeEEEeccccceeEEEeeecCC-CCcEEEEEe----------------CCCcEEEEeCCCCceEEEeccCCC---
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIASGS----------------EDSQVYIWHRYTGELVLALAGHSG--- 530 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs----------------~dg~I~iwd~~~~~~~~~~~~h~~--- 530 (581)
.++ ....... .... . ..+++ +|+++++++ .++.|++||+.+++.. .+..+..
T Consensus 272 ~~g-~~~~l~~-~~~~--~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~ 343 (396)
T 3c5m_A 272 ETL-ENEEVMV-MPPC--S---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWD 343 (396)
T ss_dssp TTC-CEEEEEE-CCSE--E---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCC
T ss_pred CCC-CeEEeee-CCCC--C---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccc
Confidence 876 3322221 1111 1 33467 999888765 3478999999887753 3444443
Q ss_pred --------CEEEEEEcCCCCcEEEEEE-CCCcEEEecCC
Q 008005 531 --------SVNCVSWNPANLHMLASAS-DDRTIRIWGLD 560 (581)
Q Consensus 531 --------~v~~l~~~p~~~~~l~s~s-~Dg~I~iW~~~ 560 (581)
.+..++|+|+| ..|+.++ .++...+|.++
T Consensus 344 ~~~~~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 344 VLDGDRQITHPHPSFTPND-DGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CBTTBSSTTCCCCEECTTS-SEEEEEECTTSSCEEEEEE
T ss_pred cccccccCCCCCceEccCC-CeEEEEecCCCCceEEEEE
Confidence 25678999999 4565555 45666665543
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.8e-18 Score=172.54 Aligned_cols=278 Identities=8% Similarity=0.019 Sum_probs=195.3
Q ss_pred CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----------CCcEEEEEcCCCcEEEEEecC---
Q 008005 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKT--- 358 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~--- 358 (581)
.|+.|.+||..++. ....+..+..+ .++|+||+++++++.. ++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~---~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGK---FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCC---EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCe---EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 47899999987763 34556555555 8999999999998863 567999999999988887643
Q ss_pred ---CCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEee-ccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECC
Q 008005 359 ---GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESW-KGQKTLRISDMAITDDG-KRIISICREAAILLLDRE 431 (581)
Q Consensus 359 ---~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~ 431 (581)
......++++||+++|+++.. ++.|.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|+..
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 234567899999999998874 58999999998877654 4332 22335567765 678888999999999876
Q ss_pred C-CeeeEE-------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc-eeEEEeccc------cce-eEEEeeec
Q 008005 432 A-NFERWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGHK------RAR-FVIRSCFG 495 (581)
Q Consensus 432 ~-~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~------~~~-~~i~~~~~ 495 (581)
. +..... ........+.+++++..++..+.++.+.++|+..... ....+.... ... .......+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 332211 1111112233456777777778889999999875422 222221110 000 00001223
Q ss_pred CCCCcEEEEEeC-----------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc--
Q 008005 496 GFEQAFIASGSE-----------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI-- 562 (581)
Q Consensus 496 ~~~~~~l~sgs~-----------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~-- 562 (581)
+++++.++++.. .+.|.+||..+++.+..+..+. +.+++|+|+| ++|++++. ++|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSC
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcc
Confidence 778777776543 3489999999999999998877 9999999999 58887776 99999999999
Q ss_pred cccccc-----CCCceEEecCCC
Q 008005 563 NMKHRD-----QSNGIVHHCNGR 580 (581)
Q Consensus 563 ~~~~~~-----~~~~~~~~~~G~ 580 (581)
+..... ...+++++|||+
T Consensus 338 ~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETTSCSSEEEEEECCCSC
T ss_pred eeeEEeccCCCCcEEEEecCCCC
Confidence 655442 257789999997
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=2.8e-18 Score=173.27 Aligned_cols=276 Identities=11% Similarity=0.032 Sum_probs=187.7
Q ss_pred EEcccCCeeeEEEEecCCCCCEEE-----EEeCCCCCeEEEeeC-CC--cEEEEEcCCCcEEEEEecCCCeEEEEEEecC
Q 008005 299 WEVKEDGQVSLKHRLSGHRKPVFT-----VSWSPNDHQLLTCGQ-EE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 299 wd~~~~~~~~~~~~~~~h~~~V~~-----l~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
++..++. ....+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+||
T Consensus 15 ~~~~~g~---~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 15 QDASTGA---QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp ECTTTCC---EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred ecCCCCc---ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 3444443 34556667666665 889999999998887 66 4888899999887766666655556789999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEE--EEeeCCCEEEEEE----------------------cCCeEE
Q 008005 371 GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM--AITDDGKRIISIC----------------------REAAIL 426 (581)
Q Consensus 371 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i--~~~~~~~~l~~~~----------------------~dg~i~ 426 (581)
++.|+.++.++.|++||+.+++.......+...+... .++++++.++... .+..|+
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 9999999999999999999877665554444344333 3489999887532 346899
Q ss_pred EEECCCCe-eeEEecCCceEEEEECC-CCCEEEEEeeC------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 427 LLDREANF-ERWIEEEEVITSFSLSK-DNKYLLVNLIN------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
+||+.++. .....+...+..+.|+| ||+.|+....+ ..|.++|..+. ....+..+..... +....++|+
T Consensus 172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~-~~~~~~spd 248 (388)
T 3pe7_A 172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGES-CTHEFWVPD 248 (388)
T ss_dssp EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEE-EEEEEECTT
T ss_pred EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcc-cccceECCC
Confidence 99999887 45556677789999999 99999887764 26777777653 3334443332222 223445999
Q ss_pred CcEEEEEeC-CC----cEEEEeCCCCceE--EEeccCCCC---EEEEEEcCCCCcEEEEE--------ECCCcEEEecCC
Q 008005 499 QAFIASGSE-DS----QVYIWHRYTGELV--LALAGHSGS---VNCVSWNPANLHMLASA--------SDDRTIRIWGLD 560 (581)
Q Consensus 499 ~~~l~sgs~-dg----~I~iwd~~~~~~~--~~~~~h~~~---v~~l~~~p~~~~~l~s~--------s~Dg~I~iW~~~ 560 (581)
|+.|+..+. ++ .|++||+.+++.. ..+.++... ...++|+|+|..++++. ..+..|++||+.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 997755443 22 3999999988743 333331110 12237999995444333 456789999999
Q ss_pred ccccccc----c-----------CCCceEEecCCC
Q 008005 561 QINMKHR----D-----------QSNGIVHHCNGR 580 (581)
Q Consensus 561 ~~~~~~~----~-----------~~~~~~~~~~G~ 580 (581)
+++...- . ....+.|+|||+
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~ 363 (388)
T 3pe7_A 329 NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK 363 (388)
T ss_dssp TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred CCceEEeccccCcccccccccccCCCCccCCCCCC
Confidence 8765321 1 246678999996
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=1.3e-17 Score=166.88 Aligned_cols=244 Identities=9% Similarity=0.051 Sum_probs=167.8
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCe--EEEee------------
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ--LLTCG------------ 336 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--l~s~~------------ 336 (581)
+...+..++|+|||++|++++.+ .|.+|++...+..........+ +.+.+++|+|||++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34467889999999999999888 9999999722333222222212 23567899999994 55553
Q ss_pred -CCCcEEEEEcC-CCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCC-CCeEEeec--c--CccccE
Q 008005 337 -QEEAIRRWDVN-SGECLHVYE----KTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLD-GRELESWK--G--QKTLRI 404 (581)
Q Consensus 337 -~dg~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~-~~~~~~~~--~--~~~~~i 404 (581)
.+|.+.+|++. +++....+. .+...+.+++|+|||++++++.. ++.|.+||++ ++++.... . .+...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466554443 24567899999999998887764 6799999998 66543221 1 123468
Q ss_pred EEEEEeeCCCEEEEEEc-CCeEEEEECC--CCeee----EEe-c-------CC------ceEEEE-ECCCCCEEEEEeeC
Q 008005 405 SDMAITDDGKRIISICR-EAAILLLDRE--ANFER----WIE-E-------EE------VITSFS-LSKDNKYLLVNLIN 462 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~----~~~-~-------~~------~i~~~~-~sp~~~~l~~~~~d 462 (581)
..++|+|+|+++++++. ++.|.+|+.. ++... ... . .. .+..++ |+|||++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988775 6899999765 34321 111 1 11 478999 99999998887653
Q ss_pred C------cEEEEEecCCCceeEE---EeccccceeEEEeeecCC---CCcEEEEEeCC-CcEEEEeCCCC
Q 008005 463 Q------EIHLWSIESDPKLVSR---YKGHKRARFVIRSCFGGF---EQAFIASGSED-SQVYIWHRYTG 519 (581)
Q Consensus 463 ~------~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~~~---~~~~l~sgs~d-g~I~iwd~~~~ 519 (581)
. .|.+|++......... ...+.... ....++| +|++|++++.+ +.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 8999999632243321 22222111 1223367 79999998875 89999998765
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=9.6e-18 Score=181.96 Aligned_cols=290 Identities=9% Similarity=0.066 Sum_probs=200.2
Q ss_pred eeecccccCcEEEEEEcCCCCEEEEE--eCCCeEEEEEcccCCeeeEEEEecCCCCCEE---------EEEeC--CCCCe
Q 008005 265 LQILEAHSDEVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF---------TVSWS--PNDHQ 331 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasg--s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~---------~l~~s--p~~~~ 331 (581)
...+.+|...|..++|++++-++++. +.++...||....++. ...+..|...+. ...|+ |||+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCe
Confidence 34677899999999999887777777 5688999999754432 345666766665 56565 99998
Q ss_pred -EEEeeC-CCcEEEEEcC--C-CcEEEEEec-----CCCeEEEEEEecCCCeEEEEeCC----------CcEEEEeCCC-
Q 008005 332 -LLTCGQ-EEAIRRWDVN--S-GECLHVYEK-----TGVGLISCGWFLDGGGIFAGMTD----------KSICLWDLDG- 390 (581)
Q Consensus 332 -l~s~~~-dg~i~vwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~sg~~d----------g~i~vwd~~~- 390 (581)
|+.++. +..|.+|++. . +. ...+.. +...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 776554 5667777765 3 44 344544 56678899999999999998877 5899999988
Q ss_pred -----CeEEeec-cCccccEEEEEEeeCCCEEEEEEcC--------CeEEEEECC-CC---e-eeEEe-cCCceEEEEEC
Q 008005 391 -----RELESWK-GQKTLRISDMAITDDGKRIISICRE--------AAILLLDRE-AN---F-ERWIE-EEEVITSFSLS 450 (581)
Q Consensus 391 -----~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~-~~~~~-~~~~i~~~~~s 450 (581)
+...... ... ..+..++|+|||++|+.++.+ ..|++||+. ++ . ..... +...+..+.|+
T Consensus 172 ~~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred ccccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 6665554 333 478889999999999988755 379999998 45 3 33333 36789999999
Q ss_pred CCCCEEEEEeeCC--cEEEEEecCCCceeEEEecccccee----E--EEeeecCCCCcEEEEEeCCCcEEEE--eCCCCc
Q 008005 451 KDNKYLLVNLINQ--EIHLWSIESDPKLVSRYKGHKRARF----V--IRSCFGGFEQAFIASGSEDSQVYIW--HRYTGE 520 (581)
Q Consensus 451 p~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~----~--i~~~~~~~~~~~l~sgs~dg~I~iw--d~~~~~ 520 (581)
|||++++++..++ .|.+||+.++ .. ..+..+..... . +....+++++.++++++. +.++|| |..+++
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~-~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATG-AA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTC-CE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCC-ce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 9999777777777 4555555443 33 23222221110 0 112333678999999999 999999 655555
Q ss_pred eEEEeccCCCCEEEE-EEcCCCCcEEEEEECCCc--EEEecCCcccc
Q 008005 521 LVLALAGHSGSVNCV-SWNPANLHMLASASDDRT--IRIWGLDQINM 564 (581)
Q Consensus 521 ~~~~~~~h~~~v~~l-~~~p~~~~~l~s~s~Dg~--I~iW~~~~~~~ 564 (581)
+..+..|...+..+ +++++. .++++++.+.. |.+|++.+++.
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCCE
T ss_pred -EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCce
Confidence 67788888888877 555443 34445555544 55556656554
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=5.1e-16 Score=149.62 Aligned_cols=241 Identities=11% Similarity=0.182 Sum_probs=176.6
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEec------CCCeEEEEEEe-cCCCeEEEEeC-CCcEEEE
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK------TGVGLISCGWF-LDGGGIFAGMT-DKSICLW 386 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~sg~~-dg~i~vw 386 (581)
++-..+.++++++++.++++...++.|.+||.. ++.+..+.. +...+.++++. +++..+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 666666642 22467889995 55554444433 8899999
Q ss_pred eCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeCC
Q 008005 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
|..+.....+.......+..++++++|+.+++...++.|.+||.......... ....+..++++|+++++++...++
T Consensus 106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 185 (286)
T 1q7f_A 106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 185 (286)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence 96665555444444457899999999997777777899999997665544332 334689999999999777777789
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccCCC--CEEEEEEcCC
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGHSG--SVNCVSWNPA 540 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~ 540 (581)
.|++||... ..+..+........ ...+..+++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|+
T Consensus 186 ~i~~~~~~g--~~~~~~~~~g~~~~-p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 186 CVKVFNYEG--QYLRQIGGEGITNY-PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EEEEEETTC--CEEEEESCTTTSCS-EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEEcCCC--CEEEEEccCCccCC-CcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 999999754 45555544321111 22333478899888888886 9999995 5777777765533 4789999999
Q ss_pred CCcEEEEEECCCcEEEecCCcc
Q 008005 541 NLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
| +++++ +.|++|++|++...
T Consensus 262 g-~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 G-SVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp T-EEEEE-ETTTEEEEEECSCC
T ss_pred C-cEEEE-CCCCeEEEEEcccc
Confidence 9 67776 67999999998653
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1.3e-16 Score=157.56 Aligned_cols=270 Identities=14% Similarity=0.108 Sum_probs=192.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
..|.+++|++++..++..+.++.++.|. . .....+..+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 3467788999888777777888999992 2 234556667778899999999998888888999999999988876
Q ss_pred EEEecCCCeEEEEEEecCCCeEEEEeCC----CcEEEEeCCCCeEEeecc--CccccEEEEEEeeCCCEEEEEEc-----
Q 008005 353 HVYEKTGVGLISCGWFLDGGGIFAGMTD----KSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIISICR----- 421 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~----- 421 (581)
.....+...+.+++++++++.+++...+ +.|.+||.+++....... .....+.+++++|+|+.+++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 6554566789999999999877776666 689999998776543221 23347899999999987776553
Q ss_pred -CCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEEE-----eccccceeEEEee
Q 008005 422 -EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRY-----KGHKRARFVIRSC 493 (581)
Q Consensus 422 -dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~i~~~ 493 (581)
.+.|..+|..++. .........+..++|+|++++++++ +.++.|.+||+.+.......+ ...... .....+
T Consensus 160 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i 238 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC 238 (333)
T ss_dssp CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred CCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence 3677888877654 3333444567899999999876655 457899999996432222211 111111 123334
Q ss_pred ecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC------CEEEEEEcCCCCcEEEEEECC
Q 008005 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG------SVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~------~v~~l~~~p~~~~~l~s~s~D 551 (581)
..+++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+|++. .|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~-~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN-QLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC-EEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC-EEEEEeCc
Confidence 44788998888888899999998 5777766654433 689999999974 45444443
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.6e-16 Score=158.44 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=189.8
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEecC---CCCCEEEEEeCCCCC
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSG---HRKPVFTVSWSPNDH 330 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~ 330 (581)
.+..+..+..+ .++|+|||+++++++ .+++|.+||..+......+..... +......++|+|||+
T Consensus 43 ~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 43 FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence 34556656555 899999999998886 367899999976543332222211 224567899999999
Q ss_pred eEEEeeC--CCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCC-CeEE-e-----eccC
Q 008005 331 QLLTCGQ--EEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDG-RELE-S-----WKGQ 399 (581)
Q Consensus 331 ~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~-~~~~-~-----~~~~ 399 (581)
+|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|++.. +... . ....
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9998864 57999999999988877 54332 2335567765 6778888999999999854 3333 1 1111
Q ss_pred ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe---c-----------CCceEEEEECCCCCEEEEEee----
Q 008005 400 KTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE---E-----------EEVITSFSLSKDNKYLLVNLI---- 461 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~-----------~~~i~~~~~sp~~~~l~~~~~---- 461 (581)
.. ....+.+++++..++..+.++.+.++|+......... . ......++++|+++.++++..
T Consensus 199 ~~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KD-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TT-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CC-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 11 1223344678888888888999999998765422111 0 011123789999998888764
Q ss_pred -------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--ceEEEeccCCCCE
Q 008005 462 -------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLALAGHSGSV 532 (581)
Q Consensus 462 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~v 532 (581)
.+.|.+||+.+. +.+..+..+. ...+ .++|+|++|++++. +.|.+||..++ +.+..+..+....
T Consensus 278 ~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~i---a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P 350 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSM---TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEAS 350 (361)
T ss_dssp TTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEE---EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSE
T ss_pred cccccCCCceEEEEECCCC-cEEEEEecCC--eeEE---EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCc
Confidence 348999999998 7788877765 2332 33899999998887 99999999999 9999987777888
Q ss_pred EEEEEcCCC
Q 008005 533 NCVSWNPAN 541 (581)
Q Consensus 533 ~~l~~~p~~ 541 (581)
..++++|+|
T Consensus 351 ~~~~~~p~G 359 (361)
T 2oiz_A 351 LQVQFHPVG 359 (361)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 999999998
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=1.6e-16 Score=157.68 Aligned_cols=254 Identities=12% Similarity=0.164 Sum_probs=176.3
Q ss_pred CcEEEEEEcCCCCEEEEEe---------CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---C-
Q 008005 273 DEVWFLQFSHDGKYLASSS---------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---E- 339 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs---------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g- 339 (581)
..+..+++ ||+.++... .++.|.+|++.++... .+ ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 35667777 888877642 2567999999865321 22 458899999999999987754 2
Q ss_pred -cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC---------------------------CcEEEEeCCCC
Q 008005 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---------------------------KSICLWDLDGR 391 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---------------------------g~i~vwd~~~~ 391 (581)
.|.+||+.+++.......+. +..+.|+||++.|+.++.+ ..|++||+.++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred ceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 38888988887665554433 8999999999998887642 57999999888
Q ss_pred eE-EeeccCccccEEEEEEeeCCCEEEEEEcC---------CeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe
Q 008005 392 EL-ESWKGQKTLRISDMAITDDGKRIISICRE---------AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 392 ~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
+. ..+.. . .+..++|+|+| .++++..+ ..|.++| ++. .....+ ..+..+ +|+|++|+.++
T Consensus 163 ~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp EEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEE
T ss_pred eEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEE
Confidence 76 44443 2 68899999999 77766543 2466666 444 333333 444444 99999988877
Q ss_pred eC--------CcEEEEEecCCCceeEEEeccccceeEEEe-eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC
Q 008005 461 IN--------QEIHLWSIESDPKLVSRYKGHKRARFVIRS-CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS 531 (581)
Q Consensus 461 ~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 531 (581)
.+ ..|.+|| ++ ........+... +.. ..++ ++ ++++++.++.+++| +.+++... +..+.+.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~---~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~ 303 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRG---VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHW 303 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSE---EEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSE
T ss_pred ccccCCccccceEEEEC--CC-ceEeccccCCcc---cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCe
Confidence 54 3577777 33 333322333332 332 4447 77 89999999999999 87666544 4445788
Q ss_pred EEEEEEcCCCCcEEEEEECCCcE-EEecCC
Q 008005 532 VNCVSWNPANLHMLASASDDRTI-RIWGLD 560 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~Dg~I-~iW~~~ 560 (581)
|.+++|+| . ++++++.++.. .+|.++
T Consensus 304 v~~~~~s~-~--~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 304 IMGFDVDE-I--VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEESS-S--EEEEEECSSSCCEEEEES
T ss_pred EEeeeeeC-c--EEEEEcCCCChHHheEeC
Confidence 99999999 4 77777777665 777776
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=1.7e-16 Score=156.25 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=179.6
Q ss_pred CCCEEEEEeCCCCCeEEEeeCC------------------------CcEEEEEcCCCcEEEEEe-cCCCeEEEEEEecCC
Q 008005 317 RKPVFTVSWSPNDHQLLTCGQE------------------------EAIRRWDVNSGECLHVYE-KTGVGLISCGWFLDG 371 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 371 (581)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+. .+-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568999999999988887776 479999999999877664 233578899999999
Q ss_pred CeEEEEeCCCcEEEEeCCCC--eEEeec--------cCccccEEEEEEee-CCCEEEEEE-cCCeEEEEECCCCeeeEEe
Q 008005 372 GGIFAGMTDKSICLWDLDGR--ELESWK--------GQKTLRISDMAITD-DGKRIISIC-REAAILLLDREANFERWIE 439 (581)
Q Consensus 372 ~~l~sg~~dg~i~vwd~~~~--~~~~~~--------~~~~~~i~~i~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 439 (581)
+.+++...++.|++||.++. .+..+. ..+...+..++++| ++..+++.+ .++.|++||..........
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~ 182 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG 182 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence 98888888999999998765 333332 12233688999999 788777776 6999999996554433332
Q ss_pred c-----------CCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEE---
Q 008005 440 E-----------EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS--- 504 (581)
Q Consensus 440 ~-----------~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--- 504 (581)
. -..+..++++|+ +.++++...++.|++||..++ +.+..+.............+ +| +..+++
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~-~p-g~~~~~~g~ 259 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISY-IP-GFLFAVNGK 259 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEE-ET-TEEEEEECC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeee-cC-CEEEEeCCC
Confidence 1 123889999998 666666677889999999865 66666643322111122222 55 333333
Q ss_pred ----EeCCCcEEEEeCCCCceEEEec---cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 505 ----GSEDSQVYIWHRYTGELVLALA---GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 505 ----gs~dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
...+..|++||..+++.+..+. ++...+.+|+++|+| .++++...++.|++|+++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 3345589999999999998873 677789999999999 89999999999999998753
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=9.1e-16 Score=147.84 Aligned_cols=242 Identities=12% Similarity=0.148 Sum_probs=177.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec------CCCCCEEEEEe-CCCCCeEEEeeC-CCc
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS------GHRKPVFTVSW-SPNDHQLLTCGQ-EEA 340 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~------~h~~~V~~l~~-sp~~~~l~s~~~-dg~ 340 (581)
.+|-..+.+++++++|.++++...++.|.+||.. +.. ...+. +|...+.++++ .+++.++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~---~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF---KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE---EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcE---EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 3566789999999999988888889999999986 322 22222 34467899999 567766666543 789
Q ss_pred EEEEEcCCCcEEEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-CccccEEEEEEeeCCCEEEE
Q 008005 341 IRRWDVNSGECLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~ 418 (581)
|.+|| .+++.+..+.. +...+.++++.++++.+++...++.|.+||..+.....+.. .....+..++++++++.+++
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99999 66777776643 34568899999999877777778999999987665544432 23346899999999987777
Q ss_pred EEcCCeEEEEECCCCeeeEEecC---CceEEEEECCCCCEEEEEeeCC-cEEEEEecCCCceeEEEeccccceeEEEeee
Q 008005 419 ICREAAILLLDREANFERWIEEE---EVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
...++.|++||............ ..+..++++++|+++++...++ .|.+||... ..+..+..+....... .+.
T Consensus 181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~-~i~ 257 (286)
T 1q7f_A 181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQCF-DVA 257 (286)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSCEE-EEE
T ss_pred ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC--CEEEEEcccCCCCcce-eEE
Confidence 77899999999866554333322 5688999999998888877775 999999643 5566665543322222 233
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 495 GGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
++++|+++++ +.|+.|++|+....
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCcEEEE-CCCCeEEEEEcccc
Confidence 3788887777 67999999997653
No 174
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=9.2e-17 Score=159.30 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=168.9
Q ss_pred EEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCC-CeEEEEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEeeccC
Q 008005 322 TVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 322 ~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~ 399 (581)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.+++ +..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999999888876553 25678999999987654 45689999999988776543332
Q ss_pred c------cccEEEEEEeeCCCEEEEEEcC------------CeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEE
Q 008005 400 K------TLRISDMAITDDGKRIISICRE------------AAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 400 ~------~~~i~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
. ...+..++|+|+|+++++++.+ +.|.+||+.++. .....+...+.+++|+|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 2 2237889999999999998865 899999998743 23344556788999999999 66
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccc--------------------ee-EEEeeecCCCCcEEEEEe-CCCcEEEEe
Q 008005 458 VNLINQEIHLWSIESDPKLVSRYKGHKRA--------------------RF-VIRSCFGGFEQAFIASGS-EDSQVYIWH 515 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~~-~i~~~~~~~~~~~l~sgs-~dg~I~iwd 515 (581)
++ ++.|.+||+.++ +....+...... .. ......+.+++....... ....+..+|
T Consensus 163 ~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 163 VA--GPDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EE--SSSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred Ec--cCcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 54 445999999887 555555433200 00 000111122111000000 001122244
Q ss_pred CCCCceE-EEeccCCCCEEEEEEcC-CCCcEEEEEECCCcEEEecCCccccccc----cCCCceEEecCCC
Q 008005 516 RYTGELV-LALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIWGLDQINMKHR----DQSNGIVHHCNGR 580 (581)
Q Consensus 516 ~~~~~~~-~~~~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~~~~~G~ 580 (581)
..+++.. ..+..+...+.+++|+| ++ .+++++ ++.|.+||+.+++.... ....++.+++||+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 307 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCC
Confidence 4444321 12233566789999999 98 577777 88999999998876432 2366788999986
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.1e-16 Score=175.72 Aligned_cols=303 Identities=10% Similarity=0.043 Sum_probs=193.5
Q ss_pred CCCceeeccCCCCcccccccceeecccccCc-----EEEEEEcCCCCEEEEEeCC---------CeEEEEEcccCCeeeE
Q 008005 244 DSDFSLYSDHQCGRNRIPSQTLQILEAHSDE-----VWFLQFSHDGKYLASSSKD---------QSAIIWEVKEDGQVSL 309 (581)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~l~~s~~g~~lasgs~d---------g~i~iwd~~~~~~~~~ 309 (581)
+..+.+|+... .++...+.+|... ...++|||||++|+.++.+ +.+.+||+.++.
T Consensus 35 ~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---- 103 (740)
T 4a5s_A 35 ENNILVFNAEY-------GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---- 103 (740)
T ss_dssp TTEEEEEETTT-------CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----
T ss_pred CCcEEEEECCC-------CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----
Confidence 55666665332 2334556666532 3447899999999998876 566799998752
Q ss_pred EEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe-cCCCeE-----------------EEEEEecCC
Q 008005 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGL-----------------ISCGWFLDG 371 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v-----------------~~~~~~~~~ 371 (581)
...+..|...+...+|||||+.||.+. ++.|++|++.+++..+... ++...+ ..+.|+|||
T Consensus 104 ~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg 182 (740)
T 4a5s_A 104 LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG 182 (740)
T ss_dssp ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC
Confidence 234677888999999999999999884 6899999999887554321 222222 248899999
Q ss_pred CeEEEEeCCC------------------------------------cEEEEeCCC---C---eEEeecc-----CccccE
Q 008005 372 GGIFAGMTDK------------------------------------SICLWDLDG---R---ELESWKG-----QKTLRI 404 (581)
Q Consensus 372 ~~l~sg~~dg------------------------------------~i~vwd~~~---~---~~~~~~~-----~~~~~i 404 (581)
+.|+.++.|. .|++||+.+ + ....... .+...+
T Consensus 183 ~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (740)
T 4a5s_A 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262 (740)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEE
Confidence 9999875322 488899987 6 4444332 245578
Q ss_pred EEEEEeeCCCEEEEEEcC----CeEEEEECCCCe--------eeE--EecCCceE-----EEEECCCCCEEE-EEee-CC
Q 008005 405 SDMAITDDGKRIISICRE----AAILLLDREANF--------ERW--IEEEEVIT-----SFSLSKDNKYLL-VNLI-NQ 463 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~--------~~~--~~~~~~i~-----~~~~sp~~~~l~-~~~~-d~ 463 (581)
..++|+|||+.++..... ..|++||..++. ... ..+...+. ...|+|||+.++ ..+. +|
T Consensus 263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 999999999977665432 379999988764 111 23444443 788999999877 5553 33
Q ss_pred --cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC----CC--cEEEEeCCCCceEEEecc----CCCC
Q 008005 464 --EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE----DS--QVYIWHRYTGELVLALAG----HSGS 531 (581)
Q Consensus 464 --~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~----dg--~I~iwd~~~~~~~~~~~~----h~~~ 531 (581)
.|++||+.++ . ...+......+..+ ..+. ++.++++++. .+ .|+..++..+.....+.. ....
T Consensus 343 ~~~l~~~~~~~~-~-~~~lT~g~~~v~~~--~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~ 417 (740)
T 4a5s_A 343 YRHICYFQIDKK-D-CTFITKGTWEVIGI--EALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQ 417 (740)
T ss_dssp CEEEEEEETTCS-S-CEESCCSSSCEEEE--EEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBC
T ss_pred ceEEEEEECCCC-c-eEecccCCEEEEEE--EEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCc
Confidence 5778887764 2 33343333232222 2122 3334444444 23 455556555444334442 2457
Q ss_pred EEEEEEcCCCCcEEEEEECC--CcEEEecCCccc
Q 008005 532 VNCVSWNPANLHMLASASDD--RTIRIWGLDQIN 563 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~D--g~I~iW~~~~~~ 563 (581)
+..+.|+|++..++++.+.. ..+.+++..+++
T Consensus 418 ~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 418 YYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp BEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 88999999995444454442 367777776554
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2.5e-17 Score=166.53 Aligned_cols=254 Identities=10% Similarity=-0.010 Sum_probs=170.8
Q ss_pred EEEEEeCCCCCeEEEeeCC---CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee
Q 008005 320 VFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 396 (581)
+..++|+|||++|+.+... ..|.+||+.+++.......+......+.|+||++.|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6788999999998877543 4688899988876544333332233378999999999999999999999988766554
Q ss_pred ccCccccEEE-------------------EEEeeCCCEEEEE-----EcCCeEEEEECCCCe-eeEEecCCceEEEEECC
Q 008005 397 KGQKTLRISD-------------------MAITDDGKRIISI-----CREAAILLLDREANF-ERWIEEEEVITSFSLSK 451 (581)
Q Consensus 397 ~~~~~~~i~~-------------------i~~~~~~~~l~~~-----~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp 451 (581)
...+...... +.++|+++.++.. ..+..|++||+.++. .....+...+..+.|+|
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence 4433222222 3456677665544 356689999998877 44456677789999999
Q ss_pred -CCCEEEEEeeC------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCC
Q 008005 452 -DNKYLLVNLIN------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTG 519 (581)
Q Consensus 452 -~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~ 519 (581)
+++.|+..+.+ ..|.+||+.+. . ...+..+.. ...+....++|+|++|+.++.+ +.|++||+.++
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 198 FDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCCT-TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccCC-CccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 78877776653 35888887654 2 233332211 2234445569999987776554 44999999888
Q ss_pred ceEEEeccCCCCEEEEEEcC-CCCcEEEEEE----------------CCCcEEEecCCccccccccC-------------
Q 008005 520 ELVLALAGHSGSVNCVSWNP-ANLHMLASAS----------------DDRTIRIWGLDQINMKHRDQ------------- 569 (581)
Q Consensus 520 ~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s----------------~Dg~I~iW~~~~~~~~~~~~------------- 569 (581)
+....... . ... +.|+| ++ .++++++ .++.|.+||+.+++...-..
T Consensus 275 ~~~~l~~~-~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 275 ENEEVMVM-P-PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp CEEEEEEC-C-SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred CeEEeeeC-C-CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 75443221 1 233 89999 99 5777654 34789999998776543211
Q ss_pred --CCceEEecCCC
Q 008005 570 --SNGIVHHCNGR 580 (581)
Q Consensus 570 --~~~~~~~~~G~ 580 (581)
...+.|++||+
T Consensus 351 ~~~~~~~~s~dg~ 363 (396)
T 3c5m_A 351 ITHPHPSFTPNDD 363 (396)
T ss_dssp TTCCCCEECTTSS
T ss_pred CCCCCceEccCCC
Confidence 23467889886
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=2.5e-15 Score=164.09 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=176.4
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCC-----cEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc-------
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEE-----AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS------- 382 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~------- 382 (581)
+|...+..++|||||++|+.+..++ .|++||+.+++.......+ ..+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999998776543 8999999999876543222 22567999999999999988766
Q ss_pred ---------EEEEeCCCCeE---Ee-eccCccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCC------C--e-e
Q 008005 383 ---------ICLWDLDGREL---ES-WKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREA------N--F-E 435 (581)
Q Consensus 383 ---------i~vwd~~~~~~---~~-~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~------~--~-~ 435 (581)
|++|++.++.. .. ....+...+..+.|+|||++|+.++. +..|++||+.+ + . .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999977542 22 22223335788999999999988875 67899999976 4 2 4
Q ss_pred eEEecCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-
Q 008005 436 RWIEEEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS- 509 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg- 509 (581)
....+...+.. .|+|+|+.|+..+..+ .|.+||+.+... ....+..+.... .+....+++++.++++...|+
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD-VLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-EEEEEEEETTTEEEEEEEETTE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC-eEEEEEEEcCCEEEEEEEECCE
Confidence 44444444444 5889999888777643 599999877521 234454444321 233333356778889998888
Q ss_pred -cEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEEC---CCcEEEecCCccc
Q 008005 510 -QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD---DRTIRIWGLDQIN 563 (581)
Q Consensus 510 -~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---Dg~I~iW~~~~~~ 563 (581)
.|++|++.+|+.+..+..+.+.+.+++++|++..++++.+. .++|..||+.+++
T Consensus 359 ~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46777887888888888888889999999998545555443 4789999998776
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=6.7e-16 Score=167.41 Aligned_cols=248 Identities=8% Similarity=0.014 Sum_probs=178.4
Q ss_pred EecCCCCCEEEEEeCCCCCeEEEe--eCCCcEEEEEcCCCcEEEEEecCCCeEE---------EEEEe--cCCCe-EEEE
Q 008005 312 RLSGHRKPVFTVSWSPNDHQLLTC--GQEEAIRRWDVNSGECLHVYEKTGVGLI---------SCGWF--LDGGG-IFAG 377 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~sg 377 (581)
.+.+|...+..++|+++.-++++. +.++...||....+.....+..+...+. ...|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788899999999887667766 5688899999655555666666655555 56666 99998 7765
Q ss_pred eC-CCcEEEEeCC--C-CeEEeeccC----ccccEEEEEEeeCCCEEEEEEcC----------CeEEEEECCC------C
Q 008005 378 MT-DKSICLWDLD--G-RELESWKGQ----KTLRISDMAITDDGKRIISICRE----------AAILLLDREA------N 433 (581)
Q Consensus 378 ~~-dg~i~vwd~~--~-~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d----------g~i~i~d~~~------~ 433 (581)
+. +..|+++++. + +........ +...+.+++|+|||+.|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 54 5678888877 4 555544442 34578899999999999998877 5899999988 5
Q ss_pred e-eeEE-ecCCceEEEEECCCCCEEEEEeeCC--------cEEEEEecC-CC--ceeEEEeccccceeEEEeeecCCCCc
Q 008005 434 F-ERWI-EEEEVITSFSLSKDNKYLLVNLINQ--------EIHLWSIES-DP--KLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 434 ~-~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~--------~i~iwd~~~-~~--~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
. .... .+...+..++|||||++|+.++.++ .|++||+.. +. .......++... +....++|+|+
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~---~~~~~~spdg~ 254 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA---IAQAEWAPDGS 254 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC---EEEEEECTTSC
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce---EcceEECCCCe
Confidence 5 3334 4556788899999999999887653 799999984 31 233333333333 33344589999
Q ss_pred EEEEEeCCC--cEEEEeCCCCceEEEeccCCCC--------EEEEEEcCCCCcEEEEEECCCcEEEe--cCCcccc
Q 008005 501 FIASGSEDS--QVYIWHRYTGELVLALAGHSGS--------VNCVSWNPANLHMLASASDDRTIRIW--GLDQINM 564 (581)
Q Consensus 501 ~l~sgs~dg--~I~iwd~~~~~~~~~~~~h~~~--------v~~l~~~p~~~~~l~s~s~Dg~I~iW--~~~~~~~ 564 (581)
++++++.++ .|++||..+++.......+... +.+++|+|++ .++++++. +.++|| ++.+++.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEE
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcE
Confidence 888888888 6777777777765544443322 5678899998 79999998 999999 5554443
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=1e-13 Score=133.98 Aligned_cols=281 Identities=12% Similarity=0.059 Sum_probs=193.9
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
+..+...+.+++++++|.++++...++.|.+||.. + .+.. .....+...+.++++.+++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 34456789999999999988777668899999987 3 2222 2223355779999999999888887778899999976
Q ss_pred CCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec-cCccccEEEEEEeeCCCEEEEEEcCCe
Q 008005 348 SGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 348 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~ 424 (581)
++. ..+. .....+.++++.+++..+++...++.|..||. ++...... ......+..+++.++++..++...++.
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 443 2332 24557889999998877777767889999998 44443332 223346899999999987777767789
Q ss_pred EEEEECCCCeeeEE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcE
Q 008005 425 ILLLDREANFERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 425 i~i~d~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
|..||. ++..... .....+..+++++++++.++...++.|..||. ++ .. ..+....... .+..+...++|.+
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~~-~~~~~~~~~~-~~~~i~~~~~g~l 238 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-EI-TEFKIPTPNA-RPHAITAGAGIDL 238 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-CE-EEEECSSTTC-CEEEEEECSTTCE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-cE-EEEECCCCCC-CceeEEECCCCCE
Confidence 999999 5542222 23456889999999997766666889999998 54 32 2232221111 1233344778887
Q ss_pred EEEEeCCCcEEEEeCCCCceEEE-eccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 502 IASGSEDSQVYIWHRYTGELVLA-LAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.++...++.|.+||. +++.... +..+...+.++++ +++ .++++.+ .+.|..++.++.+
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g-~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE-TIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSS-CEEEEET-TTEEEEEEEC---
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCC-CEEEEec-CCcEEEEEcCccc
Confidence 776667889999998 4543322 3445678999999 888 5666544 5677777776654
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=5.6e-14 Score=147.27 Aligned_cols=308 Identities=10% Similarity=0.055 Sum_probs=208.3
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc--cCCeeeEEEEecCCCCCEEEEEeC----CCCCeEEEeeC
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--EDGQVSLKHRLSGHRKPVFTVSWS----PNDHQLLTCGQ 337 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~--~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~l~s~~~ 337 (581)
.+..+.. ...+..+.|||||+++++++.|+.|.+||+. +. +....+.... ....++|+ |||++++++..
T Consensus 189 v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 189 IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEE
T ss_pred EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecCC-CCceeEEccccCCCCCEEEEEEc
Confidence 4444442 2356689999999999999999999999995 44 3334444433 35799999 69998887765
Q ss_pred -CCcEEEEEcCCCcEEEEEecC-----------CCeEEEEEEecCCCeEEE-EeCCCcEEEEeCCCCe-EEeeccCcccc
Q 008005 338 -EEAIRRWDVNSGECLHVYEKT-----------GVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRE-LESWKGQKTLR 403 (581)
Q Consensus 338 -dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~-~~~~~~~~~~~ 403 (581)
+++|.|+|..+.+.+..+... ...+..+..++++..++. ...+|.|.++|..... +..........
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~ 343 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 343 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccc
Confidence 589999999999988877532 125677888887665544 4556899999986542 11111112235
Q ss_pred EEEEEEeeCCCEEEEEE-cCCeEEEEECCCCee-eEEec-CC-c--eEEEE-ECCCCCEEEEEe--eCCcEEEEEecCC-
Q 008005 404 ISDMAITDDGKRIISIC-REAAILLLDREANFE-RWIEE-EE-V--ITSFS-LSKDNKYLLVNL--INQEIHLWSIESD- 473 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~~-~~-~--i~~~~-~sp~~~~l~~~~--~d~~i~iwd~~~~- 473 (581)
..++.|+|+++++++++ .++.|.++|..+++. ..... .. + -.... ++|++..+++.+ .++.|.++|..+.
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 77889999999987766 578999999999872 22222 11 1 01222 588765555444 3689999999872
Q ss_pred -----CceeEEEeccccceeEEEeeecCCCCcEEEEEeC-------CCcEEEEeCCCC-----c-eEEEec--------c
Q 008005 474 -----PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-------DSQVYIWHRYTG-----E-LVLALA--------G 527 (581)
Q Consensus 474 -----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-------dg~I~iwd~~~~-----~-~~~~~~--------~ 527 (581)
.+.++.+.........+. .+|+++++++... ..+|.++|+.+. . ....+. .
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~---~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIK---THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEE---CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred CccccCEEEEEEecCCCCCEEEE---eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 256677765533322222 3899999988763 459999998876 2 112332 1
Q ss_pred CCCCEEEEEEcCCCCcEEEEEE----CCCcEEEecCCccccccccCCCceEEecCCC
Q 008005 528 HSGSVNCVSWNPANLHMLASAS----DDRTIRIWGLDQINMKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 528 h~~~v~~l~~~p~~~~~l~s~s----~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G~ 580 (581)
-...+..+.|+|+|..+++|.. .++.|.|+|..+.++........+ ..|.|+
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~-~~P~g~ 556 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERL-VTPTGK 556 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTC-CSEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCCcc-cCCCee
Confidence 2357899999999965666643 379999999999998776654332 334443
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=2.9e-14 Score=149.47 Aligned_cols=272 Identities=12% Similarity=0.108 Sum_probs=195.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC--CCcEEEEEecCC
Q 008005 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTG 359 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~ 359 (581)
|.+.++++...+++|.++|..++. ....+.. ...+..+.|+||++++++++.|+.|.+||+. +++.+..+....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC---EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCceEEEEeCCCCeEEEEECCCCe---EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC
Confidence 344567777889999999998763 3344443 2357799999999999999999999999996 888888776644
Q ss_pred CeEEEEEEe----cCCCeEEEEeC-CCcEEEEeCCCCeEEeeccCc-----------cccEEEEEEeeCCCEEEE-EEcC
Q 008005 360 VGLISCGWF----LDGGGIFAGMT-DKSICLWDLDGRELESWKGQK-----------TLRISDMAITDDGKRIIS-ICRE 422 (581)
Q Consensus 360 ~~v~~~~~~----~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~~-~~~d 422 (581)
....++|+ |||+++++++. ++.|.++|..+.+........ ...+..+..++++..++. ....
T Consensus 241 -~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 -EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp -EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred -CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 56789999 69999887765 589999999876654432211 226778888888765544 4456
Q ss_pred CeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEec-cccce--eEEEeeec
Q 008005 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKG-HKRAR--FVIRSCFG 495 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~--~~i~~~~~ 495 (581)
|.|.++|..... ...+........+.|+|++++++++. .++.|.++|+.++ +.+..+.. ...+. .... +.
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~--~~ 396 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN--FV 396 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE--EE
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee--eE
Confidence 999999987753 33344556677899999999988776 4789999999987 66655543 21111 1122 23
Q ss_pred CCCCc-EEEEEe-CCCcEEEEeCCC-------CceEEEeccCCCCEEEEEEcCCCCcEEEEEEC-------CCcEEEecC
Q 008005 496 GFEQA-FIASGS-EDSQVYIWHRYT-------GELVLALAGHSGSVNCVSWNPANLHMLASASD-------DRTIRIWGL 559 (581)
Q Consensus 496 ~~~~~-~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-------Dg~I~iW~~ 559 (581)
.|++. +.+++. .++.|.++|..+ .+.+.++......-..+..+|+++ .+..... ..+|.++|+
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~-~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ-YLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS-EEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC-eEEEecCCCCCcccCceEEEEEC
Confidence 66644 444443 468999999987 677888876544445578899995 5555442 469999999
Q ss_pred Ccc
Q 008005 560 DQI 562 (581)
Q Consensus 560 ~~~ 562 (581)
.+.
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 877
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.2e-14 Score=140.68 Aligned_cols=245 Identities=11% Similarity=0.053 Sum_probs=175.6
Q ss_pred EecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008005 312 RLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 390 (581)
.+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++++.+++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3444566688999999998 7788888999999999887 566767777899999999998777776678999999976
Q ss_pred CeEEeeccC----ccccEEEEEEeeCCCEEEEE----E-------------cCCeEEEEECCCCeeeEEecCCceEEEEE
Q 008005 391 RELESWKGQ----KTLRISDMAITDDGKRIISI----C-------------REAAILLLDREANFERWIEEEEVITSFSL 449 (581)
Q Consensus 391 ~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~~ 449 (581)
+........ ....+.+++++|+|+.+++. + ..+.|..++.................++|
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAF 179 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEE
Confidence 665444321 12346789999999988763 2 13577778776333444555667889999
Q ss_pred CCCCCEEEEEeeCCcEEEEEecCCCce---eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008005 450 SKDNKYLLVNLINQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 450 sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 526 (581)
+|+++.+++.+.++.|.+|++...... ...+..+... ...+.+.++|++.++. ++.|.+||.. ++.+..+.
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~---p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~ 253 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK---TDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL 253 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC---CCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC---CCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence 999999966677889999999732233 2233111111 1223347888866665 7899999976 88888888
Q ss_pred cCCCCEEEEEE-cCCCCcEEEEEECCCcEEEecCCccccccc
Q 008005 527 GHSGSVNCVSW-NPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 527 ~h~~~v~~l~~-~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.+.. +++++| .|++ ..|+.++.+ .+.-++..+.++++.
T Consensus 254 ~~~~-~~~~~f~~~d~-~~L~v~t~~-~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 254 TPQT-TSNLCFGGPEG-RTLYMTVST-EFWSIETNVRGLEHH 292 (296)
T ss_dssp CSSC-CCEEEEESTTS-CEEEEEETT-EEEEEECSCCBCCC-
T ss_pred CCCC-ceeEEEECCCC-CEEEEEcCC-eEEEEEccccccccc
Confidence 7777 999999 5787 577777765 455556666666543
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=7.2e-15 Score=144.65 Aligned_cols=238 Identities=10% Similarity=0.055 Sum_probs=171.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEEcccCCeeeEEEEe-cCCCCCEEEEEeC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKD------------------------QSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWS 326 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~d------------------------g~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~s 326 (581)
-+.|.+++++|+|+++++.+.+ ++|.+||..++.. ...+ .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---LQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---EEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---EeccCCCccCCceEEEEC
Confidence 4679999999999999888777 4799999876532 2333 2455678999999
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCc-EEEEEe---------cCCCeEEEEEEec-CCCeEEEEe-CCCcEEEEeCCCCeEE
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGE-CLHVYE---------KTGVGLISCGWFL-DGGGIFAGM-TDKSICLWDLDGRELE 394 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~sg~-~dg~i~vwd~~~~~~~ 394 (581)
|+|+++++...++.|++||..... .+..+. .+-.....++++| ++..+++.+ .++.|++||.++....
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~ 179 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVT 179 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEE
Confidence 999988888889999999976442 444442 2334688999999 677777765 6899999997665544
Q ss_pred eeccC---------ccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-eeEE---ecCCceEEEEECCCCCEEEEE-
Q 008005 395 SWKGQ---------KTLRISDMAITDD-GKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVN- 459 (581)
Q Consensus 395 ~~~~~---------~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~sp~~~~l~~~- 459 (581)
.+... ....+..++++|+ +..+++...++.|++||..++. .... .....+..++++| +..+.+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 44311 1234889999998 6666777788999999998555 3332 2445688999999 4333332
Q ss_pred ------eeCCcEEEEEecCCCceeEEEe---ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 460 ------LINQEIHLWSIESDPKLVSRYK---GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 460 ------~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..+..|++||..++ +.+..+. ++... ...+.++++|.++++...++.|++|++.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~---p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDM---PHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSS---EEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCC---eeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 23458999999887 6666664 22222 2233348899888899999999999965
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.70 E-value=9.3e-16 Score=167.02 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=181.6
Q ss_pred CCCCEEEEEeCCC---eEEEEEccc-CCeeeEEEE----ecCCCCCEEEEEeCCCCCeEE-----EeeCCCcEEEEEcCC
Q 008005 282 HDGKYLASSSKDQ---SAIIWEVKE-DGQVSLKHR----LSGHRKPVFTVSWSPNDHQLL-----TCGQEEAIRRWDVNS 348 (581)
Q Consensus 282 ~~g~~lasgs~dg---~i~iwd~~~-~~~~~~~~~----~~~h~~~V~~l~~sp~~~~l~-----s~~~dg~i~vwd~~~ 348 (581)
|+|++++....++ .-.||.... ++....+.. ..+|...+..++|||||++|| .|+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5777776655443 344555432 222222211 124666799999999999998 445567899999999
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc-------------EEEEeCCCCe----EEeeccCccccEEEEEEee
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS-------------ICLWDLDGRE----LESWKGQKTLRISDMAITD 411 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-------------i~vwd~~~~~----~~~~~~~~~~~i~~i~~~~ 411 (581)
++.+............++|+|||+.|+.++.|.. |++|++.++. +......+...+..+.|+|
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 9864110111111267899999999999988776 9999998654 2222222334688999999
Q ss_pred CCCEEEEEEcCC----eEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEee----CCcEEEEEecCCCc-eeEEEe
Q 008005 412 DGKRIISICREA----AILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI----NQEIHLWSIESDPK-LVSRYK 481 (581)
Q Consensus 412 ~~~~l~~~~~dg----~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~-~~~~~~ 481 (581)
||++|+.++.++ .|++++..++. ..+..+...+....+ +++. ++..+. ++.|.+||+.+... ....+.
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence 999998887766 78888765554 455555556666666 5666 555554 57899999876521 123333
Q ss_pred ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC-CCceEEEeccC-CCCEEEEEEcCCCCcEEEEEEC---CCcEEE
Q 008005 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY-TGELVLALAGH-SGSVNCVSWNPANLHMLASASD---DRTIRI 556 (581)
Q Consensus 482 ~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~---Dg~I~i 556 (581)
.+.... .+....++ ++.++++...|+..++|.+. +++....+..+ .+.|..++++|++..++++.+. .++|++
T Consensus 315 ~~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 315 PEDSSA-SLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CCCSSC-EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred cCCCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 332111 12222223 67889999999988877654 46666667655 6778889999998544444443 478999
Q ss_pred ecCCcccc
Q 008005 557 WGLDQINM 564 (581)
Q Consensus 557 W~~~~~~~ 564 (581)
||+.+++.
T Consensus 393 ~d~~~g~~ 400 (695)
T 2bkl_A 393 TSVSTGKS 400 (695)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99987664
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=6.9e-15 Score=160.62 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=167.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCC-----eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc----
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~---- 340 (581)
+|...+..++|||||++||.++.++ .|++||+.++..... .+.. ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence 4556789999999999999776543 899999987633221 2221 12668999999999999888766
Q ss_pred ------------EEEEEcCCCcE--EEEEec--CCCeEEEEEEecCCCeEEEEeC-----CCcEEEEeCCC------C--
Q 008005 341 ------------IRRWDVNSGEC--LHVYEK--TGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLDG------R-- 391 (581)
Q Consensus 341 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~sg~~-----dg~i~vwd~~~------~-- 391 (581)
|++|++.+++. ...+.. +...+..+.|+||+++|+.++. +..|++||+.+ +
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999988762 233333 3456789999999999988765 56899999975 4
Q ss_pred eEEeeccCccccEEEEEEeeCCCEEEEEEcC----CeEEEEECCCCe----eeEEecCC--ceEEEEECCCCCEEEEEee
Q 008005 392 ELESWKGQKTLRISDMAITDDGKRIISICRE----AAILLLDREANF----ERWIEEEE--VITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 392 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~----~~~~~~~~--~i~~~~~sp~~~~l~~~~~ 461 (581)
....+..... .+.. .|+++|+.|+..+.. ..|.+||+.++. .....+.. .+..++|++++.++++...
T Consensus 278 ~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 278 KWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 3444443332 3333 588999988877653 369999998763 34444443 6888999988888888888
Q ss_pred CCc--EEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE-e---CCCcEEEEeCCCCc
Q 008005 462 NQE--IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-S---EDSQVYIWHRYTGE 520 (581)
Q Consensus 462 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg-s---~dg~I~iwd~~~~~ 520 (581)
++. |.+||+.++ .....+..+... +....+++++..++.. + ..+.|+.||+.+++
T Consensus 356 ~g~~~l~~~~~~~g-~~~~~l~~~~~~---v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATG-ALLKIFPLEVGS---VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTC-CEEEEECCCSSE---EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCC-CEEEecCCCCce---EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 885 455666454 455666665333 3333447777655533 2 35789999998877
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=4.6e-15 Score=161.54 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=165.4
Q ss_pred cccCcEEEEEEcCCCCEEE-----EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc----
Q 008005 270 AHSDEVWFLQFSHDGKYLA-----SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~la-----sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~---- 340 (581)
+|...+..++|||||++|| .|+.+.+|++||+.++.... ...+... ....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 5667899999999999998 34445789999998764220 1111111 1267899999999999988776
Q ss_pred ---------EEEEEcCCCc----EEEEEecCCCeEEEEEEecCCCeEEEEeCCC----cEEEEeCCCCeEEeeccCcccc
Q 008005 341 ---------IRRWDVNSGE----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK----SICLWDLDGRELESWKGQKTLR 403 (581)
Q Consensus 341 ---------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~~~~ 403 (581)
|++|++.++. .+.....+...+..+.|+|||++|+.++.++ .|++|+..++....+..... .
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~ 273 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-A 273 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-C
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-c
Confidence 9999999876 3333333446788999999999998887666 78888776655555544433 3
Q ss_pred EEEEEEeeCCCEEEEEEc----CCeEEEEECCCCe----eeEEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 404 ISDMAITDDGKRIISICR----EAAILLLDREANF----ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
+....+ ++|. ++..+. ++.|.+||+.++. .....+ ...+..++++ ++.++++...++..++|.+...
T Consensus 274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 444445 6777 555543 5789999998764 344433 4457888888 6778888888999888877632
Q ss_pred CceeEEEeccccceeEEEeeecCCCCcEEEEE----eCCCcEEEEeCCCCce
Q 008005 474 PKLVSRYKGHKRARFVIRSCFGGFEQAFIASG----SEDSQVYIWHRYTGEL 521 (581)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg----s~dg~I~iwd~~~~~~ 521 (581)
......+..+... .+....+++++..++.. ...++|++||+.+++.
T Consensus 351 g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 GKPVRTVQLPGVG--AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCEEEECCCSSSS--EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeeEEecCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2444444433211 23334447788766632 2357899999988774
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=5.3e-14 Score=138.25 Aligned_cols=272 Identities=10% Similarity=0.016 Sum_probs=186.9
Q ss_pred CCCeEEEEEcccCCeeeEEEEec------CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEE
Q 008005 292 KDQSAIIWEVKEDGQVSLKHRLS------GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISC 365 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 365 (581)
.+++|.+||..++. ....+. ........+.+. +++.+++...++.|.+||..+++.+..+.. ......+
T Consensus 15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE
T ss_pred CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE
Confidence 37899999998652 222211 122346778774 455566666679999999999999888853 4567889
Q ss_pred EEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCcc-----ccEEEEEEeeCCCEEEEEE--cCCeEEEEECCCCe-ee
Q 008005 366 GWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKT-----LRISDMAITDDGKRIISIC--REAAILLLDREANF-ER 436 (581)
Q Consensus 366 ~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~~ 436 (581)
++++++ .++++. .++.|.+||..+.++........ .....+++ . +..++++. .++.|.++|..+.. ..
T Consensus 90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 90 HFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 998888 555555 89999999999887654332221 14556777 3 44555555 48899999999877 44
Q ss_pred EEecCCceEEEEECCCCCEEEEEeeC----------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEe
Q 008005 437 WIEEEEVITSFSLSKDNKYLLVNLIN----------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 437 ~~~~~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
..........+.++|+|++++++..+ +.|.++|..+. +....+....+. . .....++|+++.++++.
T Consensus 167 ~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~-~-p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 167 ELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGD-W-PSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTC-C-CEEEEECTTSCEEEEES
T ss_pred EEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCC-C-ceeEEEecCCCEEEEEc
Confidence 44555567889999999977766554 78999999876 555555432211 1 12233388888888776
Q ss_pred CCCcEEEEeCCCCceEEE--eccCCCCEEEEEEcCCCCcEEEEE----ECCCcEEEecCCccccccccC----CCceEEe
Q 008005 507 EDSQVYIWHRYTGELVLA--LAGHSGSVNCVSWNPANLHMLASA----SDDRTIRIWGLDQINMKHRDQ----SNGIVHH 576 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~----s~Dg~I~iW~~~~~~~~~~~~----~~~~~~~ 576 (581)
. .|++||..+++.... +..+.....+++++|++..++++. ..++.|.+|+.+ +++..... +.+++|-
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 5 899999988876421 222246789999999654677777 678999999998 77665433 4444444
Q ss_pred c
Q 008005 577 C 577 (581)
Q Consensus 577 ~ 577 (581)
|
T Consensus 321 ~ 321 (328)
T 3dsm_A 321 L 321 (328)
T ss_dssp C
T ss_pred c
Confidence 3
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.7e-14 Score=136.11 Aligned_cols=241 Identities=6% Similarity=-0.073 Sum_probs=169.4
Q ss_pred CEEEEEeCCCCCeEE-EeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec
Q 008005 319 PVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 397 (581)
...++++++++++++ +...++.|.+||..++............+.++++.++++.+++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998777 557788999999766543322223334677899999988555544 889999999876655444
Q ss_pred cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
......+..++++++|+.+++...++.|.+|+..+...... .....+..++++++++++++...++.|.+||..+. .
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~ 182 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-N 182 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-C
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-c
Confidence 33334789999999999777777789999998665543222 22346788999999997777666889999998775 2
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
........... ...+...++|.++++...++.|.+|+............+...+.+++++|+| .++++...++.|+
T Consensus 183 ~~~~~~~~~~~---p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 183 QVVLPFTDITA---PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVV 258 (270)
T ss_dssp EEECCCSSCCS---EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEE
T ss_pred eEeecccCCCC---ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCEEE
Confidence 22211111122 2233347788877777778999999987654443333344678999999999 6889999999999
Q ss_pred EecCCccccc
Q 008005 556 IWGLDQINMK 565 (581)
Q Consensus 556 iW~~~~~~~~ 565 (581)
++++...+..
T Consensus 259 ~~~~~~~~~~ 268 (270)
T 1rwi_B 259 KLTSLEHHHH 268 (270)
T ss_dssp EECCCGGGSC
T ss_pred EEcCCCcccc
Confidence 9999877654
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=2.9e-14 Score=141.36 Aligned_cols=222 Identities=11% Similarity=0.071 Sum_probs=159.1
Q ss_pred CCEEEEEeCCCCCeEEEee---------CCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC---C--cE
Q 008005 318 KPVFTVSWSPNDHQLLTCG---------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---K--SI 383 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g--~i 383 (581)
..+..+++ ||+.++... .++.|.+||+.+++.... ..+..+.|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34667777 888877642 256799999998875433 457889999999999887754 2 48
Q ss_pred EEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC---------------------------CeEEEEECCCCee-
Q 008005 384 CLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE---------------------------AAILLLDREANFE- 435 (581)
Q Consensus 384 ~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~- 435 (581)
.+||+.+++......... +..++|+|||+.|+.++.+ ..|++||+.++..
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888998887766554443 8999999999999888743 5799999988764
Q ss_pred eEEecCCceEEEEECCCCCEEEEEeeCC-------cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 436 RWIEEEEVITSFSLSKDNKYLLVNLINQ-------EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
..+... .+..+.|+|+| +++++..++ ...+|.+.++ . ...+..+ .. +. .+ +|+|++|+.++.+
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~---~~-~~-spdg~~l~~~~~~ 235 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EEKMFEK-VS---FY-AV-DSDGERILLYGKP 235 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EEEEEEE-ES---EE-EE-EECSSCEEEEECC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-c-eEEeccC-cc---ee-eE-CCCCCEEEEEEcc
Confidence 333333 78899999999 777665542 4455555532 3 3334333 22 11 22 7899988877754
Q ss_pred --------CcEEEEeCCCCceEEEeccCCCCEEE-EEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 509 --------SQVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 509 --------g~I~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..|++|| +++.......|...+.. +.|+ ++ ++++++.++.+++| +++++.
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE
T ss_pred ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce
Confidence 3688888 66666556667788886 9999 76 88899999999999 875443
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=1.4e-13 Score=131.39 Aligned_cols=239 Identities=11% Similarity=0.102 Sum_probs=174.5
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCC-CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC-CC
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GV 360 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~ 360 (581)
.+++|++++.|+.|.+||.+++ +....+..+. ..+.++.++|+|++++ +.++.|..||. +|+.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 4678999999999999999776 4456666655 4688999999999888 34678999998 89999998875 35
Q ss_pred eEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEeecc-----CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 361 GLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKG-----QKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.+.++.+.++|+.+++.+. ++.|..+|.++..+..+.. .+......+++.++|+++++...++.|..||.....
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~ 157 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL 157 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCE
Confidence 7889999999999999887 8888888886665544431 111245567789999999999999999999998333
Q ss_pred eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc---ceeEEEeeecCCCCcEEEEEeCC---
Q 008005 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR---ARFVIRSCFGGFEQAFIASGSED--- 508 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~sgs~d--- 508 (581)
.........+.++...++++.++++..++.|..+|..++ +.+..+..... ...........++|.++++....
T Consensus 158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 444454566778888999999999888889999999877 77777764321 11223333336677777776421
Q ss_pred -----CcEEEEeC-CCCceEEEeccC
Q 008005 509 -----SQVYIWHR-YTGELVLALAGH 528 (581)
Q Consensus 509 -----g~I~iwd~-~~~~~~~~~~~h 528 (581)
+..+++.+ .+|+.+-++..+
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cccccCCceEEEECCCCCEEEEecCc
Confidence 12234444 466666666543
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=7.2e-14 Score=135.24 Aligned_cols=243 Identities=11% Similarity=0.049 Sum_probs=173.5
Q ss_pred ceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..+..+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+...+.+++++|+|+++++...++.|.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 3455556777888999999998 7888888999999998754 2 34455777899999999999888777778999
Q ss_pred EEEcCCCcEEEEEecC----CCeEEEEEEecCCCeEEE----Ee-------------CCCcEEEEeCCCCeEEeeccCcc
Q 008005 343 RWDVNSGECLHVYEKT----GVGLISCGWFLDGGGIFA----GM-------------TDKSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s----g~-------------~dg~i~vwd~~~~~~~~~~~~~~ 401 (581)
+||..+++........ ...+..+++.|+|+.+++ |+ ..+.|..++.. +....... ..
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-DR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-CC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-CC
Confidence 9999888865443322 224567999999988776 33 13467777766 44443333 23
Q ss_pred ccEEEEEEeeCCCEEEEEEcCCeEEEEECC-CCee----eEE-ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 402 LRISDMAITDDGKRIISICREAAILLLDRE-ANFE----RWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~----~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
..+..++|+|+++.+++.+.++.|.+|++. .+.. ... .....+..++++++|++.++. ++.|.+||... +
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g--~ 247 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG--D 247 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS--C
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC--C
Confidence 367899999999999777778999999986 3322 111 234456789999999866655 88999999863 5
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
.+..+..+.. .. .+++.+++++.|++++.+ .+..++..+.++
T Consensus 248 ~~~~~~~~~~-~~--~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 248 ELGRVLTPQT-TS--NLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEEECSSC-CC--EEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEEEECCCC-ce--eEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 6666666554 22 234447888888888876 466666665544
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.64 E-value=7.8e-14 Score=152.91 Aligned_cols=276 Identities=13% Similarity=0.052 Sum_probs=178.5
Q ss_pred CCCCEEEEEeCCCe---EEEEEccc----CCeeeEEE----EecCCCCCEEEEEeCCCCCeEEEeeCC-----CcEEEEE
Q 008005 282 HDGKYLASSSKDQS---AIIWEVKE----DGQVSLKH----RLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWD 345 (581)
Q Consensus 282 ~~g~~lasgs~dg~---i~iwd~~~----~~~~~~~~----~~~~h~~~V~~l~~sp~~~~l~s~~~d-----g~i~vwd 345 (581)
|+|++++....++. -.+|.... ++....+. ...+|...+..++|||||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78887776654432 55665542 22222211 112344468899999999999887654 3699999
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc--------------EEEEeCCCCe----EEeeccCccccEEEE
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS--------------ICLWDLDGRE----LESWKGQKTLRISDM 407 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~--------------i~vwd~~~~~----~~~~~~~~~~~i~~i 407 (581)
+.+++.+... .+...+..++|+|| +.|+.++.++. |++|++.+.. +......+...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 22222357899999 99988887654 8999997654 221112222248899
Q ss_pred EEeeCCCEEEEEEcCC-----eEEEEECCCC--e--eeEEecCCceEEEEECCCCCEEEEEeeC----CcEEEEEecCCC
Q 008005 408 AITDDGKRIISICREA-----AILLLDREAN--F--ERWIEEEEVITSFSLSKDNKYLLVNLIN----QEIHLWSIESDP 474 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~ 474 (581)
.|+|||++|+..+.++ .|++||+.++ . .....+....... ++|+++.|+..+.+ +.|.+||+.+..
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999998887654 8999999776 3 3333444444444 34899998888764 459999987641
Q ss_pred -ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC-CCceEEEecc-CCCCEEEEEEcCCCCcEEEEEEC-
Q 008005 475 -KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY-TGELVLALAG-HSGSVNCVSWNPANLHMLASASD- 550 (581)
Q Consensus 475 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~- 550 (581)
.....+..+... +....+. ++.++++...|+..+||.+. +++....+.. +.+.|..++++|++..++++.+.
T Consensus 353 ~~~~~l~~~~~~~---l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 353 PRFDTVVPESKDN---LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp CEEEEEECCCSSE---EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred cccEEEecCCCCe---EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 333333333322 3222223 56788889999977776543 4666666665 36778999999998545555443
Q ss_pred --CCcEEEecCCcccc
Q 008005 551 --DRTIRIWGLDQINM 564 (581)
Q Consensus 551 --Dg~I~iW~~~~~~~ 564 (581)
.++|++||+.+++.
T Consensus 429 ~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 429 TQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCcE
Confidence 47899999987653
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=2.5e-13 Score=129.57 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=164.5
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCC-CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEE
Q 008005 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISD 406 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 406 (581)
.+++|++++.++.|.+||.++|+.+..+..+. ..+.++.+.|+|+.++ +.++.|..||..+..+-.+.......+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 36789999999999999999999999998775 4788899999998888 45788999999555555544433347889
Q ss_pred EEEeeCCCEEEEEEc-CCeEEEEECCCCeeeEEec-------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008005 407 MAITDDGKRIISICR-EAAILLLDREANFERWIEE-------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 407 i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
+.+.++|+.+++.+. ++.|..+|........... ......+++.++|+++++...++.|..||.. + +.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CEEE
Confidence 999999999999887 8888888875544322221 1234566789999999999999999999987 5 7777
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC------CCEEEEEEcCCCCcEEEEEE
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS------GSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~------~~v~~l~~~p~~~~~l~s~s 549 (581)
.+...... +. . ...++++++++++.++.|..+|..+|+.+.++..+. ..+.+++..++| .++++..
T Consensus 160 ~~~~~~~~-~~--~-~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~~ 231 (276)
T 3no2_A 160 SVKLSGTP-FS--S-AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICNW 231 (276)
T ss_dssp EEECSSCC-CE--E-EECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEEE
T ss_pred EEECCCCc-cc--e-eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC-CEEEEec
Confidence 77764332 22 2 226789999999999999999999999998886542 237888899998 6777663
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=8.4e-13 Score=129.95 Aligned_cols=241 Identities=10% Similarity=0.028 Sum_probs=166.7
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--- 338 (581)
.+....+..+...+.+++|+|+|++++++..++.|.+||..++.. ......+...+.+++|+|+++++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---EEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 344556677778889999999999888888899999999876532 22223466789999999999888877666
Q ss_pred -CcEEEEEcCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccCccccEEEEEE
Q 008005 339 -EAIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 339 -g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~ 409 (581)
+.|.+||..++.....+. .....+.+++++|++..+++... .+.|..+|..++........ ...+..++|
T Consensus 111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~ 189 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIAL 189 (333)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEE
T ss_pred CceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEE
Confidence 689999998887654443 23457889999999977766543 35677777766555443322 235788999
Q ss_pred eeCCCEEEEE-EcCCeEEEEECCC-Ce-ee------EEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008005 410 TDDGKRIISI-CREAAILLLDREA-NF-ER------WIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 410 ~~~~~~l~~~-~~dg~i~i~d~~~-~~-~~------~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
+|+++.++.+ +.++.|.+||..+ +. .. .... ...+..++++++|+++++...++.|.+||... ..+.
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~~ 267 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPIG 267 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS--CEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC--CEEE
Confidence 9999876555 4578999999863 22 11 1111 13678899999999877777788999999843 5555
Q ss_pred EEeccccc----eeEEEeeecCCCCcEEEEEeCCC
Q 008005 479 RYKGHKRA----RFVIRSCFGGFEQAFIASGSEDS 509 (581)
Q Consensus 479 ~~~~~~~~----~~~i~~~~~~~~~~~l~sgs~dg 509 (581)
.+..+... .....+++ ++++..|+.++.++
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~-~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTHPQF-IPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTTGGGTCSCBCCEEEE-CTTSCEEEEEEECG
T ss_pred EEEcCCCccccccCcceEEE-CCCCCEEEEEeCcc
Confidence 55543220 01122333 68877776655553
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=2.6e-12 Score=128.00 Aligned_cols=276 Identities=9% Similarity=-0.016 Sum_probs=186.0
Q ss_pred EcCCCCEEEEEeC--CC---eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee----------CCCcEEEE
Q 008005 280 FSHDGKYLASSSK--DQ---SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRW 344 (581)
Q Consensus 280 ~s~~g~~lasgs~--dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~dg~i~vw 344 (581)
..|+++++.+... .. +|.+||..++ +....+.....+ .++++||+++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467776666543 22 7899999865 344555544444 999999999999886 36789999
Q ss_pred EcCCCcEEEEEecC-------CCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEee-ccCccccEEEEEEeeCC-
Q 008005 345 DVNSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESW-KGQKTLRISDMAITDDG- 413 (581)
Q Consensus 345 d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~i~~~~~~- 413 (581)
|..+.+.+..+... ......+.|+|||++|+++.. ++.|.++| .++++... ..... ++.+.|++
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~ 177 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAP 177 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCC
Confidence 99998888776543 123457899999999999874 47899999 98877654 43321 24455655
Q ss_pred CEEEEEEcCCeEEEEECCCCeee-EE------ecCCc-eEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc
Q 008005 414 KRIISICREAAILLLDREANFER-WI------EEEEV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK 484 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~-~~------~~~~~-i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~ 484 (581)
+.+++.+.||.+.++|. ++... .. ....+ .....+.+++..++..+..+.+.+.|+.+.. ..+..+....
T Consensus 178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 45667788999999999 65522 11 11111 1234566666655555578899999987542 2222222110
Q ss_pred c-------ceeEEEeeecCCCCcEEEEEeC----------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEE
Q 008005 485 R-------ARFVIRSCFGGFEQAFIASGSE----------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 485 ~-------~~~~i~~~~~~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 547 (581)
. .........++++++.++.+.. ++.|.++|..+++.+..+.. .....+++|+|||..++++
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYA 335 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEE
Confidence 0 0000112334788887777653 35799999999999988864 3468999999999426777
Q ss_pred EE-CCCcEEEecCCccccccc
Q 008005 548 AS-DDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 548 ~s-~Dg~I~iW~~~~~~~~~~ 567 (581)
+. .++.|.+||+.+++....
T Consensus 336 ~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EcCCCCeEEEEECCCCCEEee
Confidence 76 589999999999887765
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=4.7e-12 Score=122.28 Aligned_cols=278 Identities=10% Similarity=0.080 Sum_probs=189.7
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
.....+.++++.++|.+.++...++.|.+|+.. + .+.. ..+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 345678999999999988877778999999987 3 3322 2233445679999999999888777768889999987 6
Q ss_pred cEEEE-EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec-cCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 350 ECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 350 ~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+.... .......+.++++.+++..+++...++.|..+|.. +...... ......+..+++.++++..++...++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 54322 22234678899999988877776668899999988 4444332 223347899999999996666666789999
Q ss_pred EECCCCeeeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE
Q 008005 428 LDREANFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 428 ~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
+|......... .....+..+++++++++.++....+.|.+||.. + .... +........ ...+...++|++.++.
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~~~~-~~~~~~~~~-~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G-EISE-YDIPTPNAR-PHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C-CEEE-EECSSTTCC-EEEEEECSTTCEEEEE
T ss_pred ECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C-cEEE-EECCCCCCC-ceEEEECCCCCEEEec
Confidence 99843333222 223468899999999877766667789999983 3 2222 221111111 2233347788877776
Q ss_pred eCCCcEEEEeCCCCceEE-EeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 506 SEDSQVYIWHRYTGELVL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 506 s~dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
..++.|..||. +++... .+......+.++++.++| .++++.. . .|..++.+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEEEEC
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEeCCC
Confidence 67789999998 454432 233345678999999998 5555544 4 66666543
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=1.1e-12 Score=127.88 Aligned_cols=243 Identities=10% Similarity=0.108 Sum_probs=170.7
Q ss_pred CCCCEEEEEeCCCCCeEEE-------eeCCCcEEEEEcCCCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeCCCcEE
Q 008005 316 HRKPVFTVSWSPNDHQLLT-------CGQEEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKSIC 384 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 384 (581)
.-....+++|++++.++++ ...++.|.+||..+++...... .+...+.++++.+++..++.++..+.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 3445689999999988887 6778899999988887643322 1335688999999834555555555899
Q ss_pred EEeCCCCeEEee-cc----CccccEEEEEEeeCCCEEEEEEcC---------------CeEEEEECCCCeeeEEecCCce
Q 008005 385 LWDLDGRELESW-KG----QKTLRISDMAITDDGKRIISICRE---------------AAILLLDREANFERWIEEEEVI 444 (581)
Q Consensus 385 vwd~~~~~~~~~-~~----~~~~~i~~i~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~i 444 (581)
+||.+ ++.... .. .....+.+++++++|+..++...+ +.|..||...............
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc
Confidence 99998 665544 22 112358899999999887776655 6788888763323344444567
Q ss_pred EEEEEC----CCCCEEEEEe-eCCcEEEEEecCCCce-----eEEEeccc-cceeEEEeeecCCCCcEEEEEeCCCcEEE
Q 008005 445 TSFSLS----KDNKYLLVNL-INQEIHLWSIESDPKL-----VSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 445 ~~~~~s----p~~~~l~~~~-~d~~i~iwd~~~~~~~-----~~~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
..++++ |+++.++++. .++.|.+||....... ...+..+. . ....+..+++|++.++...++.|.+
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG---GADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC---EEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC---CCCceEECCCCCEEEEEcCCCEEEE
Confidence 889999 9997766654 5789999998621121 11222221 1 1223344788988888888899999
Q ss_pred EeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 514 WHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 514 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
||..+++.+..+..+...+.+++|+|++..++++...++.|..|++...
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9998788777777777889999999999325566666789999998754
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=9.2e-13 Score=129.55 Aligned_cols=286 Identities=10% Similarity=0.064 Sum_probs=193.8
Q ss_pred EcCCCCEEEEEeC-----CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee----------CCCcEEEE
Q 008005 280 FSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRW 344 (581)
Q Consensus 280 ~s~~g~~lasgs~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~dg~i~vw 344 (581)
..|+++.+.+... ++.|.+.|..+. +....+.....+ . ++++|||++++++. .++.|.+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 4578887777654 678999999876 444555444444 4 99999999988775 36789999
Q ss_pred EcCCCcEEEEEecCC-------CeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCE
Q 008005 345 DVNSGECLHVYEKTG-------VGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 345 d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 415 (581)
|..+++.+..+.... .....+.++|||++++++.. ++.|.++|+.++++........ . ...+....+.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDT 191 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCce
Confidence 999999988876432 24557899999999998874 6899999999988766553322 1 2233445567
Q ss_pred EEEEEcCCeEEEEECCC-CeeeEEe--c----CCce-EEEEEC-CCCCEEEEEeeCCcEEEEEecCCC-ceeEEEec---
Q 008005 416 IISICREAAILLLDREA-NFERWIE--E----EEVI-TSFSLS-KDNKYLLVNLINQEIHLWSIESDP-KLVSRYKG--- 482 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~-~~~~~~~--~----~~~i-~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~--- 482 (581)
+++.+.||.+.++++.. +...... . ...+ ....|. ++|++++ .+.+|.+++.|+.+.. .....+..
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 78888999999999876 4421110 1 1111 123553 6776555 4558999999997652 22322220
Q ss_pred -------cccceeEEEeeecCCCCcEEEEEeC----------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEE
Q 008005 483 -------HKRARFVIRSCFGGFEQAFIASGSE----------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 483 -------~~~~~~~i~~~~~~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 545 (581)
...... ....+++++.++.... .+.|.++|..+++.+..+..- ..+++++++||+..+|
T Consensus 271 ~~~~~g~~p~g~q---~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 271 AERADGWRPGGWQ---QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLL 346 (386)
T ss_dssp HHHHTTEEECSSS---CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEE
T ss_pred ccccccccCCCcc---eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEE
Confidence 000101 1112567777766542 257999999999999888642 3688999999994355
Q ss_pred EE-EECCCcEEEecCCccccccccC----CCceEEecC
Q 008005 546 AS-ASDDRTIRIWGLDQINMKHRDQ----SNGIVHHCN 578 (581)
Q Consensus 546 ~s-~s~Dg~I~iW~~~~~~~~~~~~----~~~~~~~~~ 578 (581)
++ ...++.|.++|..+++...... .+.+.+++|
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 55 4568999999999998876544 566777766
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=2e-13 Score=130.02 Aligned_cols=240 Identities=6% Similarity=-0.085 Sum_probs=165.3
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 274 EVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 274 ~V~~l~~s~~g~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
...+++++++|++++ +.+.++.|.+|+..+.. .......+...+.+++++++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 54678899999875432 1111123335678999999998666655 889999998765543
Q ss_pred EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.........+.++++.+++..+++...++.|.+|+..+.............+..++++++++.+++...++.|.+||...
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22212235688999999998777767788999998765443332222223678899999998777766788999999887
Q ss_pred CeeeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc
Q 008005 433 NFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 433 ~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
...... .....+..++++++|.++++...++.|.+||..+. ........+... ...+..+++|+++++...++.
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNT---PLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCSCSC---EEEEEECTTCCEEEEEGGGTE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCCCCC---ceeEEECCCCCEEEEECCCCE
Confidence 663322 22356889999999977777667889999998764 222111111111 223344788998888899999
Q ss_pred EEEEeCCCCce
Q 008005 511 VYIWHRYTGEL 521 (581)
Q Consensus 511 I~iwd~~~~~~ 521 (581)
|++|+....+.
T Consensus 257 v~~~~~~~~~~ 267 (270)
T 1rwi_B 257 VVKLTSLEHHH 267 (270)
T ss_dssp EEEECCCGGGS
T ss_pred EEEEcCCCccc
Confidence 99999876543
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.3e-11 Score=119.10 Aligned_cols=239 Identities=10% Similarity=0.064 Sum_probs=169.0
Q ss_pred cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE-ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008005 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 392 (581)
..+...+.++++.++|.++++...++.|.+||.. ++..... ......+.++++.+++..+++...++.|..||..+.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI- 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-
Confidence 3455679999999999888777668899999988 6543322 234567889999999887777666889999998743
Q ss_pred EEeec-cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 393 LESWK-GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 393 ~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
...+. ......+..+++.++++.+++...++.|..||......... .....+..++++++++..++...++.|..||
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 33332 22334789999999998887777788999999833322222 2345689999999998777766678999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE-eccCCCCEEEEEEcCCCCcEEEEE
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-LAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
. ++ ... .+........ .......+++.+.++...++.|.+||. +++.... +..+...+.+++++++| .++++.
T Consensus 169 ~-~g-~~~-~~~~~~~~~~-~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~ 242 (299)
T 2z2n_A 169 E-SG-DIT-EFKIPTPASG-PVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI-DLWFTE 242 (299)
T ss_dssp T-TC-CEE-EEECSSTTCC-EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEE
T ss_pred C-CC-cEE-EeeCCCCCCc-ceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC-CEEEec
Confidence 8 43 332 2221111111 223334778887777777889999998 6665432 33455779999999998 677766
Q ss_pred ECCCcEEEecCC
Q 008005 549 SDDRTIRIWGLD 560 (581)
Q Consensus 549 s~Dg~I~iW~~~ 560 (581)
..++.|..|+.+
T Consensus 243 ~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 WGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCceEEEECCC
Confidence 678899999984
No 201
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.7e-12 Score=127.47 Aligned_cols=250 Identities=10% Similarity=0.012 Sum_probs=170.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
.....+.+. ++++.++...++.|.+||..++.. ...+. .......++++++++.+++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 456777774 455666666789999999987643 34443 3456889999988855555448899999999999988
Q ss_pred EEEecCC-----CeEEEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC---
Q 008005 353 HVYEKTG-----VGLISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--- 422 (581)
Q Consensus 353 ~~~~~~~-----~~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--- 422 (581)
..+.... .....+++ ++..++++. .++.|.++|+.+++......... ....++++++|+.++++..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccC
Confidence 7776443 14456666 455666665 48899999999877655443322 46789999999876666554
Q ss_pred -------CeEEEEECCCCee-eEEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE-eccccceeEEE
Q 008005 423 -------AAILLLDREANFE-RWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIR 491 (581)
Q Consensus 423 -------g~i~i~d~~~~~~-~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~i~ 491 (581)
+.|.++|..+... ..... ......++++|++++++++.. .|.+||..++......+ ...... ..
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~---p~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTK---YY 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSC---EE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCc---eE
Confidence 7899999988773 23332 346899999999999988754 89999998763211111 111111 22
Q ss_pred eeecCC-CCcEEEEE----eCCCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 492 SCFGGF-EQAFIASG----SEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 492 ~~~~~~-~~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
.+..+| ++.+.++. ..++.|.+||.. ++.+..+.. ......++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 233376 56666666 678899999987 988887764 233455555
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.54 E-value=1.7e-11 Score=118.43 Aligned_cols=229 Identities=11% Similarity=0.152 Sum_probs=157.9
Q ss_pred CCCCCEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE
Q 008005 315 GHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
.+..-.-+..|+|++ .++++...++.|..||..+++.. .+ .....+.++++.++++.+ ++. ++.|.+||.+++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYV-ATI-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEE-EEE-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEE-EEE-CCeEEEEECCCCcE
Confidence 344456688999954 45566667889999999887653 33 234678999999999844 444 56899999988776
Q ss_pred EeeccC----ccccEEEEEEeeCCCEEEEEEc-----------CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEE
Q 008005 394 ESWKGQ----KTLRISDMAITDDGKRIISICR-----------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 394 ~~~~~~----~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
..+... ....+++++++|+|+.+++... .+.|+.++.................++|+|+++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 544322 2246889999999996665432 2356666655433444455566789999999997765
Q ss_pred E-eeCCcEEEEEec--CCCcee--EEE---eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCC
Q 008005 459 N-LINQEIHLWSIE--SDPKLV--SRY---KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG 530 (581)
Q Consensus 459 ~-~~d~~i~iwd~~--~~~~~~--~~~---~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 530 (581)
+ +.++.|.+||+. ++ ... ..+ ...... ...+...++|++.++...++.|.+||..+++.+..+..+..
T Consensus 166 ~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~~~~~---p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTG-QISNRRSVYKLEKEEQI---PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp EEGGGTEEEEEEECTTTC-CEEEEEEEEECCGGGCE---EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred ecCCCCcEEEEeccCCCC-cccCcEEEEECCCCCCC---CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 5 457889999984 33 221 112 111111 22333478898888877888999999999999999988878
Q ss_pred CEEEEEEc-CCCCcEEEEEECC
Q 008005 531 SVNCVSWN-PANLHMLASASDD 551 (581)
Q Consensus 531 ~v~~l~~~-p~~~~~l~s~s~D 551 (581)
.+++++|. |++..++++...+
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEBCT
T ss_pred CceEEEEeCCCCCEEEEEcCCc
Confidence 89999998 8875555665543
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.53 E-value=1e-12 Score=144.06 Aligned_cols=242 Identities=12% Similarity=0.105 Sum_probs=158.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC-----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc----
Q 008005 270 AHSDEVWFLQFSHDGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~---- 340 (581)
+|...+..++|||||++||.++.+ ..|++||+.++..... .. +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCccccc
Confidence 454578899999999999887644 4699999987653321 11 1112357899999 99988877654
Q ss_pred ----------EEEEEcCCCcE--EEEEecC--CCeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCC--e-EEeecc
Q 008005 341 ----------IRRWDVNSGEC--LHVYEKT--GVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGR--E-LESWKG 398 (581)
Q Consensus 341 ----------i~vwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~--~-~~~~~~ 398 (581)
|++|++.++.. ...+... ...+..+.|+|||++|+..+.++ .|++||+.++ . ...+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 89999987752 2333332 33588999999999988877544 8999999776 4 444444
Q ss_pred CccccEEEEEEeeCCCEEEEEEcC----CeEEEEECCCC--e-eeEEe-cCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 399 QKTLRISDMAITDDGKRIISICRE----AAILLLDREAN--F-ERWIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~--~-~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
... .+... ++|+|+.|+..+.+ +.|.+||+.+. . ..... +...+..++++ ++.++++...++..++|.+
T Consensus 315 ~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 315 DLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 333 33333 35899999888764 45999999874 3 33333 33446677777 5667777888998888776
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEE-EE---eCCCcEEEEeCCCCce
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SG---SEDSQVYIWHRYTGEL 521 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-sg---s~dg~I~iwd~~~~~~ 521 (581)
.........+..+... .+....+++++..++ +. ...++|++||+.+++.
T Consensus 392 ~~~g~~~~~l~~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIG--SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ETTSCEEEECBCSSSC--EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eCCCCceeeccCCCCe--EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5322444555432111 233344467776554 32 2357899999988763
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=1e-11 Score=124.32 Aligned_cols=277 Identities=10% Similarity=0.056 Sum_probs=185.5
Q ss_pred CCCCEEEEEeC-C----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee----------CCCcEEEEEc
Q 008005 282 HDGKYLASSSK-D----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRWDV 346 (581)
Q Consensus 282 ~~g~~lasgs~-d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~dg~i~vwd~ 346 (581)
++++.+++... + +.|.++|..+. +....+..-..+ .++++||+++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 35554444433 2 68999999876 444555444455 899999999988876 3678999999
Q ss_pred CCCcEEEEEecC-------CCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC-CEE
Q 008005 347 NSGECLHVYEKT-------GVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDG-KRI 416 (581)
Q Consensus 347 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l 416 (581)
.+++.+..+... ......+.++||+++++++.. ++.|.+.|+.+.++........ . ....|++ ..+
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~ 232 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVF 232 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEE
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEE
Confidence 999998887642 123457889999999999874 5789999999887765443321 1 2334433 566
Q ss_pred EEEEcCCeEEEEECCCCeeeEE-----ec-CCc-eEEEEECCCCCEEEEEeeCCcEEEEEecCCCc-eeEEEecc---c-
Q 008005 417 ISICREAAILLLDREANFERWI-----EE-EEV-ITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-LVSRYKGH---K- 484 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~-----~~-~~~-i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~---~- 484 (581)
++.+.||.+.+.+..++..... .. ..+ ...+.+.+++..++..+..+.+.+.|+..... .+..+... .
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 7777888888888855442211 10 111 12356789988888888889999999975421 11111100 0
Q ss_pred cceeEE---EeeecCCCCcEEEEEeC----------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE-C
Q 008005 485 RARFVI---RSCFGGFEQAFIASGSE----------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS-D 550 (581)
Q Consensus 485 ~~~~~i---~~~~~~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~ 550 (581)
...+.- ....++++++.+++... ++.|.++|..+.+.+..+... ....++.|+|++..+++++. .
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCC
Confidence 000000 00123677776666542 357999999999999988643 35889999999942677776 6
Q ss_pred CCcEEEecCCcccccccc
Q 008005 551 DRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 551 Dg~I~iW~~~~~~~~~~~ 568 (581)
++.|.++|+.+.+.....
T Consensus 392 s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 392 TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEe
Confidence 999999999999977653
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=9.4e-12 Score=122.38 Aligned_cols=267 Identities=10% Similarity=0.084 Sum_probs=173.8
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEecCC----CCCEEEEEeCC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH----RKPVFTVSWSP 327 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~~h----~~~V~~l~~sp 327 (581)
.+.+..+..-..+ .++++|||+++++++ .++.|.+||..+......+..-.+. ......++|+|
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 4445555544444 499999999887765 3678999999876433322221100 12356789999
Q ss_pred CCCeEEEeeC--CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccC----c
Q 008005 328 NDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQ----K 400 (581)
Q Consensus 328 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~----~ 400 (581)
||++++++.. ++.|.++|+.+++.+.++..... ...+....+.+++.+.||.+.+.++.. +.+...... .
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999888864 68999999999999988865431 222333456777888899999999865 443221111 1
Q ss_pred cccE-EEEEEe-eCCCEEEEEEcCCeEEEEECCCCeeeEE---e-----------cCCceEEEEECCCCCEEEEEee---
Q 008005 401 TLRI-SDMAIT-DDGKRIISICREAAILLLDREANFERWI---E-----------EEEVITSFSLSKDNKYLLVNLI--- 461 (581)
Q Consensus 401 ~~~i-~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~-----------~~~~i~~~~~sp~~~~l~~~~~--- 461 (581)
..++ ....|. ++|+.+ ..+.+|.|++.|..+...... . .......++++++++.+++...
T Consensus 224 ~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp TSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred cccccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 1112 224554 566544 466789999999976642111 1 1223445788999999988764
Q ss_pred -------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEE-eCCCcEEEEeCCCCceEEEeccCCCCE
Q 008005 462 -------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASG-SEDSQVYIWHRYTGELVLALAGHSGSV 532 (581)
Q Consensus 462 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sg-s~dg~I~iwd~~~~~~~~~~~~h~~~v 532 (581)
.+.|.++|+.+. +.+..+..... ...+.++++++ +|++. ..++.|.++|..+++.+.++..- +.-
T Consensus 303 ~~~hk~~~~~V~viD~~t~-kv~~~i~vg~~----~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p 376 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTG-ERLAKFEMGHE----IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHG 376 (386)
T ss_dssp TTCTTSCEEEEEEEETTTC-CEEEEEEEEEE----ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSS
T ss_pred ccccCCCCCEEEEEECCCC-eEEEEEECCCC----cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCC
Confidence 257999999998 66666654321 22333488886 66665 45899999999999999888743 333
Q ss_pred EEEEEcCC
Q 008005 533 NCVSWNPA 540 (581)
Q Consensus 533 ~~l~~~p~ 540 (581)
+.|.+++|
T Consensus 377 ~~l~~s~d 384 (386)
T 3sjl_D 377 PQVITTAD 384 (386)
T ss_dssp CCEEEECC
T ss_pred ceeEECCc
Confidence 45555554
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2e-10 Score=110.68 Aligned_cols=258 Identities=12% Similarity=0.051 Sum_probs=177.0
Q ss_pred CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeE
Q 008005 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
.....+.++++.+++..+++...++.|.+||.. ++.... +......+.++++.+++..+++...++.|..||.. +..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678999999999888877778999999988 654432 22233578899999988877766667899999988 444
Q ss_pred Eeecc-CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 394 ESWKG-QKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 394 ~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
..+.. .....+..+++.++++.+++...++.|..+|......... .....+..++++++++..++...++.|..||.
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 43322 2234789999999998877776688999999883323222 13456889999999996666555788999988
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEE-eccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-LAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
++ ... .+........ .......+++.+.++....+.|.+||. +++.... +..+...+.+++++++| +++++..
T Consensus 175 -~g-~~~-~~~~~~~~~~-~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~ 248 (300)
T 2qc5_A 175 -TG-KLE-EYPLPTNAAA-PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEW 248 (300)
T ss_dssp -TC-CEE-EEECSSTTCC-EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred -CC-cEE-EeeCCCCCCC-cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEEecc
Confidence 33 322 2322111111 223333678887777777788999998 5554432 34455678999999998 6777666
Q ss_pred CCCcEEEecCCcccccc------ccCCCceEEecCCCC
Q 008005 550 DDRTIRIWGLDQINMKH------RDQSNGIVHHCNGRI 581 (581)
Q Consensus 550 ~Dg~I~iW~~~~~~~~~------~~~~~~~~~~~~G~~ 581 (581)
.++.|..|+.. ++... .....++...++|++
T Consensus 249 ~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l 285 (300)
T 2qc5_A 249 GANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSV 285 (300)
T ss_dssp TTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCE
T ss_pred CCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCE
Confidence 67899999984 33221 123566777777753
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=2.8e-10 Score=113.31 Aligned_cols=249 Identities=10% Similarity=-0.028 Sum_probs=165.4
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEe-cC---CCCCEEEEEeCCCC
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRL-SG---HRKPVFTVSWSPND 329 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~-~~---h~~~V~~l~~sp~~ 329 (581)
.+..+.....+ .++|||||++++.+. .++.|.+||..+......+..- .. +......+.|+|||
T Consensus 59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 34455433344 899999999988875 3678999999765332222111 00 01234588999999
Q ss_pred CeEEEeeC--CCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEeecc-----Cc
Q 008005 330 HQLLTCGQ--EEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKG-----QK 400 (581)
Q Consensus 330 ~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~~ 400 (581)
++|+++.. ++.|.++| .+++.+.. +.... ++.+.|++ ..+++.+.||.+.++|. ++....... ..
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA 210 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence 99998874 47899999 99998877 64432 23445554 45667778999999999 655442111 11
Q ss_pred ccc-EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeE---Ee-----------cCCceEEEEECCCCCEEEEEee----
Q 008005 401 TLR-ISDMAITDDGKRIISICREAAILLLDREANFERW---IE-----------EEEVITSFSLSKDNKYLLVNLI---- 461 (581)
Q Consensus 401 ~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-----------~~~~i~~~~~sp~~~~l~~~~~---- 461 (581)
..+ .....+.+++..++..+..+.+.+.|..+..... .. .......+.++|+++.++++..
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 111 2334567777666666678899999997653111 11 1122444789999998888754
Q ss_pred ------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEEe-CCCcEEEEeCCCCceEEEe
Q 008005 462 ------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 462 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 525 (581)
.+.|.++|..+. +.+..+...... ..+.++++|+ +++++. .++.|.+||..+++.+..+
T Consensus 291 ~~~~~~~~~V~VID~~t~-~vv~~i~~g~~p----~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVG-QTSSQISLGHDV----DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccccCCCCeEEEEECCCC-EEEEEEECCCCc----CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999987 666766543321 2233489999 777777 5899999999999998874
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.47 E-value=5e-11 Score=120.45 Aligned_cols=237 Identities=10% Similarity=0.027 Sum_probs=159.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--cEEEEEcCCCc
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGE 350 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--~i~vwd~~~~~ 350 (581)
.....++|+++++++++...++.|++||..++ .+ ...... ..... ++|+++++.|+++..++ .|.+|+..++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~--~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KV--TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT-EE--EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC-EE--EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 46889999999998888777899999999754 22 222222 22233 99999999998888766 78899887765
Q ss_pred EEEEE----ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee----ccCcccc--EEEEEEeeC-CCEEEEE
Q 008005 351 CLHVY----EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW----KGQKTLR--ISDMAITDD-GKRIISI 419 (581)
Q Consensus 351 ~~~~~----~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~----~~~~~~~--i~~i~~~~~-~~~l~~~ 419 (581)
....+ ......+.+++++|++..|+++..++.|+.||..++..... ....... ...++|+|+ +..+++-
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 54444 22445678899999666777777888999999987655443 2111111 138999996 5555555
Q ss_pred EcCCeEEEEECCCCeeeEEecC---------------CceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEecc
Q 008005 420 CREAAILLLDREANFERWIEEE---------------EVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~~~~~~~~---------------~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
..++.|+.|+............ .....++++|+|+++++-. .++.|+.|++.++ . +..+.++
T Consensus 286 ~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEEEC
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEeCC
Confidence 5678999999876543333332 3478999999999777777 7889999997664 3 4444443
Q ss_pred cc-c-----------eeEEEeeecCCCCcEEEEEeCCCcEEEEeC
Q 008005 484 KR-A-----------RFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 484 ~~-~-----------~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.. . ......+..++++.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 0 011122223566767676666777766654
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=5.3e-11 Score=115.82 Aligned_cols=239 Identities=10% Similarity=0.103 Sum_probs=160.0
Q ss_pred ccCcEEEEEEcCCCCEEEE-------EeCCCeEEEEEcccCCeeeEEEE--ecCCCCCEEEEEeCCC-CCeEEEeeCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLAS-------SSKDQSAIIWEVKEDGQVSLKHR--LSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~las-------gs~dg~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~sp~-~~~l~s~~~dg~ 340 (581)
.-....+++|+++|.++++ +..++.|.+|+..++. ...... ..++...+.+++++++ ++++++. ..+.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~ 93 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-KTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLG 93 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-EEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-EEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCC
Confidence 3445679999999998888 6778899999976543 221111 0124467899999999 6655544 3447
Q ss_pred EEEEEcCCCcEEEE-Eec----CCCeEEEEEEecCCCeEEEEeCC---------------CcEEEEeCCCCeEEeeccCc
Q 008005 341 IRRWDVNSGECLHV-YEK----TGVGLISCGWFLDGGGIFAGMTD---------------KSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 341 i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~sg~~d---------------g~i~vwd~~~~~~~~~~~~~ 400 (581)
|.+||.. ++.... ... ....+.++++.++++.+++...+ +.|..||.. +........
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~- 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA- 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-
Confidence 9999988 765433 221 12357899999999877766554 578888876 444333222
Q ss_pred cccEEEEEEe----eCCCEEEEEE-cCCeEEEEECC-CCe----eeEEec---C-CceEEEEECCCCCEEEEEeeCCcEE
Q 008005 401 TLRISDMAIT----DDGKRIISIC-REAAILLLDRE-ANF----ERWIEE---E-EVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 401 ~~~i~~i~~~----~~~~~l~~~~-~dg~i~i~d~~-~~~----~~~~~~---~-~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
......++++ ++++.++++. .++.|.+||.. .+. ...... . ..+..++++++|+++++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 2256889999 9997766554 67899999976 332 111111 1 5678899999999888877789999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeecCCCCcEE-EEEeCCCcEEEEeCCC
Q 008005 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI-ASGSEDSQVYIWHRYT 518 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~sgs~dg~I~iwd~~~ 518 (581)
+||..++ +....+..+... ...+++ +++++.| ++...++.|..|+...
T Consensus 251 ~~d~~~g-~~~~~~~~~~~~--~~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGG-QPKMRIRCPFEK--PSNLHF-KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCB-SCSEEEECSSSC--EEEEEE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCC-cEeEEEeCCCCC--ceeEEE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9998754 445555544333 222333 8899855 4555668899999764
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=2.3e-11 Score=122.98 Aligned_cols=235 Identities=7% Similarity=-0.011 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEe
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELES 395 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~ 395 (581)
.....|+|+++++++++...++.|++||..++........... .. ++|+++++.++++..++ .|.+|+..+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3578999999999777777789999999988877655544333 33 89999999999988866 78888886543221
Q ss_pred ec----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE----e--cCCce-E-EEEECCC-CCEEEEEeeC
Q 008005 396 WK----GQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI----E--EEEVI-T-SFSLSKD-NKYLLVNLIN 462 (581)
Q Consensus 396 ~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~--~~~~i-~-~~~~sp~-~~~l~~~~~d 462 (581)
.. ......+.+++++|++..|+++..++.|+.||..+...... . ..... . .++|+|+ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 11 21334678999999656666677889999999987763333 1 11111 3 9999995 5555555567
Q ss_pred CcEEEEEecCCCceeEEEeccc---c---------ceeEEEeeecCCCCcEEEEEe-CCCcEEEEeCCCCceEEEeccC-
Q 008005 463 QEIHLWSIESDPKLVSRYKGHK---R---------ARFVIRSCFGGFEQAFIASGS-EDSQVYIWHRYTGELVLALAGH- 528 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~---~---------~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h- 528 (581)
+.|+.|+.... +..+.++. . .........++++|+++++-+ .++.|+.|+..++.. ..+.++
T Consensus 289 ~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~ 364 (409)
T 3hrp_A 289 SSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV 364 (409)
T ss_dssp TEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred CEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence 88999987653 33333322 0 001122233478899888887 889999999877764 344433
Q ss_pred --------------CCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 529 --------------SGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 529 --------------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
-....+++++|++ .++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 2458899999998 78888888889988775
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1.3e-11 Score=121.83 Aligned_cols=173 Identities=12% Similarity=0.104 Sum_probs=136.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCC--------eeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
.++.+++++...++++|+.++ +.+|++.... .+..... ..+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999886 6669975321 0122122 23566 999999 89999998 889999999
Q ss_pred cCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008005 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 425 (581)
+.+.........+...+.++.+.+. .+++++.||.|.+||+..+.... ....|++++|+|+| ++.+..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766667777778888877654 38899999999999998766543 23479999999999 7889999999
Q ss_pred EEEECCCCee---eEE----------ecCCceEEEEECCCCCEEEEEe
Q 008005 426 LLLDREANFE---RWI----------EEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 426 ~i~d~~~~~~---~~~----------~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
++|+...... ..+ .+...|.++.|.+++.++++-.
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9998887662 233 2568899999999999888743
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=1.5e-11 Score=121.54 Aligned_cols=269 Identities=9% Similarity=-0.012 Sum_probs=172.6
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEEcccCCeeeEE----EEecCCCCCEEEEEeCCCCCeEEEeeC-----CCcE
Q 008005 273 DEVWFLQFSHDGKYLASSS--KDQSAIIWEVKEDGQVSLK----HRLSGHRKPVFTVSWSPNDHQLLTCGQ-----EEAI 341 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs--~dg~i~iwd~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~l~s~~~-----dg~i 341 (581)
..+..++++++|+++++.. .++.++||.+. .+.+... .....|-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 23436777766 3332211 011235567999999999876665433 5789
Q ss_pred EEEEcCCCcEEEEEecC------CCeEEEEEEecCCCeEEEE-e---CCCcEEEEeCCCCeEEeeccCccc-cEEEEEEe
Q 008005 342 RRWDVNSGECLHVYEKT------GVGLISCGWFLDGGGIFAG-M---TDKSICLWDLDGRELESWKGQKTL-RISDMAIT 410 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~sg-~---~dg~i~vwd~~~~~~~~~~~~~~~-~i~~i~~~ 410 (581)
.+||+.+++.+..+... ...+..+++.+++..++.+ . .++.|.+||+.++........+.. ......+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877776542 2346789999866565544 3 578999999987776555433211 11114455
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC-cEEEEEecC--CCc-----eeE--EE
Q 008005 411 DDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIES--DPK-----LVS--RY 480 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~--~~~-----~~~--~~ 480 (581)
++|..+.+.+.++.+..|. ..+..++|+|+++.|+++...+ .+..++... ... ... ..
T Consensus 176 ~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER 243 (343)
T ss_dssp ETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred ECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence 6777777777777765553 2367899999999998887765 454444321 000 000 11
Q ss_pred eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 481 ~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.++..... .+..+++|.++++...++.|.+||..+++....... +-..+.++++.+++ .++++.+..+.+.+|.
T Consensus 244 ~g~~g~pd---gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 244 YSEKPICD---GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEECCSCS---CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECCGGGSGGGB
T ss_pred cccCCCCc---eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCccccccccc
Confidence 11111111 122277899999999999999999856765433332 24568999999998 6888877655554443
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.4e-11 Score=115.42 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=154.2
Q ss_pred ecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 313 LSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..+++.++|+.+++...++.|..|+.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 334455677899999998 5666667889999998 455 44555666778999999999866655556889999987 4
Q ss_pred eEEeeccC----ccccEEEEEEeeCCCEEEE----EEc-------------CCeEEEEECCCCe-eeEEecCCceEEEEE
Q 008005 392 ELESWKGQ----KTLRISDMAITDDGKRIIS----ICR-------------EAAILLLDREANF-ERWIEEEEVITSFSL 449 (581)
Q Consensus 392 ~~~~~~~~----~~~~i~~i~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~ 449 (581)
........ ....+.++++.++|+..++ +.. .+.|+.||..++. .... .......++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~ 195 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAF 195 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEE
Confidence 43333211 1234678999999997775 321 3568888886665 3333 4456788999
Q ss_pred CCCCCEEEEEeeC------CcEEEEEecCCCcee--EEEec-cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCc
Q 008005 450 SKDNKYLLVNLIN------QEIHLWSIESDPKLV--SRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520 (581)
Q Consensus 450 sp~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~ 520 (581)
+||++.|+++... +.|.+|++.... .. ..+.. .... .......++|++ .+++.+| |.+|+. +++
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~---pdgi~~d~~G~l-wv~~~~g-v~~~~~-~g~ 268 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL---PDGFCVDRGGWL-WSSSGTG-VCVFDS-DGQ 268 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC---CCSEEECTTSCE-EECCSSE-EEEECT-TSC
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC---CCeEEECCCCCE-EEecCCc-EEEECC-CCC
Confidence 9999988887665 689999987652 11 11111 0111 111223678884 4444554 999997 677
Q ss_pred eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 521 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+..+..+. .+.+++|.|++ +.|..++.++..+
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~ 301 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQ-QRLFITGGPCLWM 301 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTS-CEEEEEETTEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCC-CEEEEEcCCeEEE
Confidence 777777655 58899999888 5666666654333
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=4.5e-10 Score=109.97 Aligned_cols=225 Identities=12% Similarity=0.078 Sum_probs=150.2
Q ss_pred EEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc
Q 008005 320 VFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (581)
Q Consensus 320 V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 398 (581)
..+..|+|++ .++++...++.|..||..+++.. .+. ....+.++.|.++++.+++. .+ .|.+||..++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 4577899975 45566667889999999887643 333 34578999999998766654 44 49999998776654432
Q ss_pred C----ccccEEEEEEeeCCCEEEEEEc------CCeEEEEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe-eCCcEE
Q 008005 399 Q----KTLRISDMAITDDGKRIISICR------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIH 466 (581)
Q Consensus 399 ~----~~~~i~~i~~~~~~~~l~~~~~------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~ 466 (581)
. ....+.+++++++|+.+++... .+.|+.++ ++. ............++|+|+++.++++. .++.|.
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 2 1236899999999987665442 35677777 344 33333445578999999999876654 468899
Q ss_pred EEEec--CC-Cc-eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEc-CCC
Q 008005 467 LWSIE--SD-PK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN-PAN 541 (581)
Q Consensus 467 iwd~~--~~-~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~-p~~ 541 (581)
+||+. ++ .. ....+................++|.+.++...++.|.+||. +++.+..+..+...+++++|. |++
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA 283 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence 99986 33 11 11122111100111233344778887777767789999998 677777787777789999998 887
Q ss_pred CcEEEEEECC
Q 008005 542 LHMLASASDD 551 (581)
Q Consensus 542 ~~~l~s~s~D 551 (581)
..++++...+
T Consensus 284 ~~L~vt~~~~ 293 (326)
T 2ghs_A 284 SRLLVTSARE 293 (326)
T ss_dssp CEEEEEEBCT
T ss_pred CEEEEEecCC
Confidence 4455555544
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=8.4e-11 Score=117.76 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=170.6
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEec--C---CCCCEEEEEeC
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLS--G---HRKPVFTVSWS 326 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~V~~l~~s 326 (581)
.+.+..+..-..+ .++++|||++|+++. .++.|.++|..+......+. +. . .......+.|+
T Consensus 109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEEC
T ss_pred CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEc
Confidence 3445555544445 899999999887775 36789999998764332222 11 0 01234578999
Q ss_pred CCCCeEEEeeC--CCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEee----ccC
Q 008005 327 PNDHQLLTCGQ--EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESW----KGQ 399 (581)
Q Consensus 327 p~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~----~~~ 399 (581)
|||++++++.. ++.|.+.|+.+++.+..+..... ....|++ ..+++.+.||.+.+.+...++.... ...
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 99999998874 57899999999999888875432 2233433 5566677788888888755444311 111
Q ss_pred cccc-EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe--------------cCCceEEEEECCCCCEEEEEee---
Q 008005 400 KTLR-ISDMAITDDGKRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKYLLVNLI--- 461 (581)
Q Consensus 400 ~~~~-i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~--- 461 (581)
...+ ...+.+.+++..++.....+.+.+.|.......... .......++++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 1111 224567899998888888999999998765422111 0111223789999998888753
Q ss_pred -------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEEe-CCCcEEEEeCCCCceEEEe
Q 008005 462 -------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 462 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 525 (581)
.+.|.++|..+. +.+..+..... ...+.++++++ ++++.. .++.|.++|..+++.+.++
T Consensus 342 ~gthk~~s~~VsVID~~T~-kvv~~I~vg~~----P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETG-ERINKIELGHE----IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTC-CEEEEEEEEEE----ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCC-eEEEEEECCCC----cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 357999999998 67776654332 11233388998 888888 5899999999999999887
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=3.9e-11 Score=130.21 Aligned_cols=241 Identities=12% Similarity=0.073 Sum_probs=159.0
Q ss_pred CCCCCEEEEEeCCCCCeEEEe-----eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc-------
Q 008005 315 GHRKPVFTVSWSPNDHQLLTC-----GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS------- 382 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~------- 382 (581)
+|...+..++|||||++||.+ +....|++||+.+++.+... ........++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 355678899999999998843 33357999999999865431 111113567899 9999999888743
Q ss_pred ------EEEEeCCCCe----EEeeccC-ccccEEEEEEeeCCCEEEEEEc----CCeEEEEECCCCe---eeEEecCCce
Q 008005 383 ------ICLWDLDGRE----LESWKGQ-KTLRISDMAITDDGKRIISICR----EAAILLLDREANF---ERWIEEEEVI 444 (581)
Q Consensus 383 ------i~vwd~~~~~----~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~---~~~~~~~~~i 444 (581)
|++|++.+.. +...... +......+.++|||++|+.... .+.|+++|+.++. ..+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 9999997643 2222222 2334778999999998876543 2589999987763 3444444444
Q ss_pred EEEEECCCCCEEEEEeeC----CcEEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeC-CC--cEEEEeC
Q 008005 445 TSFSLSKDNKYLLVNLIN----QEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DS--QVYIWHR 516 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg--~I~iwd~ 516 (581)
... +++++..|+..+.. +.|..+|+.+... ....+..+..... .++++++.|+.... ++ .|++|++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-----~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-----TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-----EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-----EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 444 66777766665542 5788999887522 1345555554432 23666776665554 44 7899998
Q ss_pred CCCceEEEec-cCCCCEEEEEEcCCCCcEEEEEECC---CcEEEecCCcccc
Q 008005 517 YTGELVLALA-GHSGSVNCVSWNPANLHMLASASDD---RTIRIWGLDQINM 564 (581)
Q Consensus 517 ~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~D---g~I~iW~~~~~~~ 564 (581)
..+ ....+. ...+.+..+.++|++..++++.+.. ++|..||+.+++.
T Consensus 358 ~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 358 EGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 754 444443 3456788888999885555555432 7899999977653
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=5.1e-11 Score=129.35 Aligned_cols=239 Identities=13% Similarity=0.204 Sum_probs=156.2
Q ss_pred cccCcEEEEEEcCCCCEEEEE-----eCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc----
Q 008005 270 AHSDEVWFLQFSHDGKYLASS-----SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA---- 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasg-----s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~---- 340 (581)
+|...+..++|||||++||.+ +...+|++||+.++..... .+... ....++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 466789999999999998853 2335799999997753321 22211 12467899 9999998887743
Q ss_pred ---------EEEEEcCCCcE--EEEEe--c-CCCeEEEEEEecCCCeEEEEeC----CCcEEEEeCCCC--eEEeeccCc
Q 008005 341 ---------IRRWDVNSGEC--LHVYE--K-TGVGLISCGWFLDGGGIFAGMT----DKSICLWDLDGR--ELESWKGQK 400 (581)
Q Consensus 341 ---------i~vwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~--~~~~~~~~~ 400 (581)
|++|++.++.. ...+. . +...+..+.|+||+++|+.... ++.|+++|+.+. ....+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 99999987642 23332 3 3445788999999998865443 358999999765 444444333
Q ss_pred cccEEEEEEeeCCCEEEEEEc----CCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEeeCC---cEEEEE
Q 008005 401 TLRISDMAITDDGKRIISICR----EAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWS 469 (581)
Q Consensus 401 ~~~i~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd 469 (581)
. ..... +++++..|+..+. .+.|..+|+.+.. ..+..+...+. .|++++++|+....++ .|++||
T Consensus 281 ~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 281 D-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp S-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred C-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 2 33333 6777777766654 3689999998754 34555555554 8899999888776644 688888
Q ss_pred ecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC----CcEEEEeCCCCce
Q 008005 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED----SQVYIWHRYTGEL 521 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d----g~I~iwd~~~~~~ 521 (581)
+.+. ....+...... .+....+++++..++....+ +.|+.||+.+++.
T Consensus 357 ~~g~--~~~~l~~p~~~--~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK--RVREVALPGLG--SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC--EEEEECCSSSS--EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC--eeEEeecCCCc--eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8753 33343322211 23233336676665554444 7899999987764
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.35 E-value=6.8e-11 Score=116.51 Aligned_cols=257 Identities=8% Similarity=-0.067 Sum_probs=171.1
Q ss_pred eEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee----------CCCcEEEEEcCCCcEEEEEecC------
Q 008005 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG----------QEEAIRRWDVNSGECLHVYEKT------ 358 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~------ 358 (581)
+|.+.|..+. +.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+..+...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889999876 445555544455 799999999998886 3678999999999999998654
Q ss_pred -CCeEEEEEEecCCCeEEEEeC--CCcEEE--EeCCCCeEEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCC
Q 008005 359 -GVGLISCGWFLDGGGIFAGMT--DKSICL--WDLDGRELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREA 432 (581)
Q Consensus 359 -~~~v~~~~~~~~~~~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~ 432 (581)
......+.++|||++++++.. +..|.+ +|+.+ ........ . ..+.|++ ..+++.+.|+.+.+.|..+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 123557899999999999875 457888 88876 22222111 1 1233444 3455667788888888876
Q ss_pred -----CeeeE-----E-ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc----cceeE---EEee
Q 008005 433 -----NFERW-----I-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK----RARFV---IRSC 493 (581)
Q Consensus 433 -----~~~~~-----~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~~~~~---i~~~ 493 (581)
+.... . ....+. . ++++..++..+. +.+.+.|+.+.. ..+..+.... ..... ....
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 33111 1 111222 3 566666666666 999999986532 2222221110 00000 0002
Q ss_pred ecCCCCcEEEEEeC---------CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEE-CCCcEEEecCCccc
Q 008005 494 FGGFEQAFIASGSE---------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS-DDRTIRIWGLDQIN 563 (581)
Q Consensus 494 ~~~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~iW~~~~~~ 563 (581)
.++++++.++.+.. ++.+.++|..+++.+..+.... ...+++|+|++..++++.. .+++|.++|+.+.+
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 23778887776543 2356699999999998887543 5899999999955788888 69999999999999
Q ss_pred cccccC
Q 008005 564 MKHRDQ 569 (581)
Q Consensus 564 ~~~~~~ 569 (581)
......
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 876655
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=3.2e-10 Score=109.91 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=156.9
Q ss_pred ceeecccccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEE
Q 008005 264 TLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..+..+........|+|+|+ +++++..++.|..|+.. + .. ..+..+...+..++++++|+++++...++.|.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TV---DVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CE---EEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CE---EEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 3445555666778899999998 66677778999999874 3 22 23344566789999999998776666667899
Q ss_pred EEEcCCCcEEEEEecC----CCeEEEEEEecCCCeEEE----EeC-------------CCcEEEEeCCCCeEEeeccCcc
Q 008005 343 RWDVNSGECLHVYEKT----GVGLISCGWFLDGGGIFA----GMT-------------DKSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s----g~~-------------dg~i~vwd~~~~~~~~~~~~~~ 401 (581)
+|+.. ++........ ...+..+++.++|+..++ |.. .+.|..||..+++..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 99986 6543322211 134567999999987776 332 356888888666554443 33
Q ss_pred ccEEEEEEeeCCCEEEEEEcC------CeEEEEECCCCe---eeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008005 402 LRISDMAITDDGKRIISICRE------AAILLLDREANF---ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~---~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
.....++|+|+++.|+.+... +.|..|++.... .... .....+..++++++|++ .+++ .+.|.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~-~~gv~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSS-GTGVCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECC-SSEEEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEec-CCcEEEECC
Confidence 367889999999988887765 789999987543 1111 12344567899999994 4444 445999987
Q ss_pred cCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
.. +.+..+..+.. ...++| +++++.|+.++.++ ++.++
T Consensus 266 ~g--~~~~~~~~~~~---~~~~~f-~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 DG--QLLGHIPTPGT---ASNCTF-DQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TS--CEEEEEECSSC---CCEEEE-CTTSCEEEEEETTE-EEEEE
T ss_pred CC--CEEEEEECCCc---eeEEEE-eCCCCEEEEEcCCe-EEEEE
Confidence 54 55666655442 223444 58888888877754 44333
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.32 E-value=2.6e-09 Score=103.08 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=149.1
Q ss_pred ccccCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 269 EAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
..+..---+..|+|++ .++++...++.|..||..++.. . .+ .....+.+++++++++++++ . ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECC
Confidence 3344455688899954 4666666789999999876432 1 12 23467999999999995554 3 5689999998
Q ss_pred CCcEEEEEec----CCCeEEEEEEecCCCeEEEEeC-----------CCcEEEEeCCCCeEEeeccCccccEEEEEEeeC
Q 008005 348 SGECLHVYEK----TGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 348 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~ 412 (581)
+++....... ....+..+++.|+|+.+++... .+.|..++..+ ....... .....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~-~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD-QVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE-EESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee-ccccccceEEcCC
Confidence 8875443332 1345788999999986665422 23455555443 3322222 2235788999999
Q ss_pred CCEEEEE-EcCCeEEEEECC--CCee----eEEe---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec
Q 008005 413 GKRIISI-CREAAILLLDRE--ANFE----RWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 413 ~~~l~~~-~~dg~i~i~d~~--~~~~----~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
++.++.+ +.++.|..|++. ++.. .+.. ....+..++++++|++.++...++.|..||..++ +.+..+..
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~ 238 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKL 238 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEEC
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEEC
Confidence 9977555 457899999873 4331 1211 2356789999999987777777788999999876 66666665
Q ss_pred cccceeEEEeeecCCCCcEEEEEeC
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
+... ...++|..|+++.|+.++.
T Consensus 239 p~~~--~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDK--TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSB--EEEEEEESGGGCEEEEEEB
T ss_pred CCCC--ceEEEEeCCCCCEEEEEcC
Confidence 5433 2344554477776655543
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.30 E-value=2.2e-10 Score=113.15 Aligned_cols=175 Identities=10% Similarity=0.062 Sum_probs=124.0
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-----------EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 387 (581)
+++.+++++...++++|+.+ .+.+|++.+.. ..... .... |+.++| |+..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999988 56669865432 11222 3445 999999 88999998 889999999
Q ss_pred CCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008005 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
+++.........+...+.++.+.+. .+++++.||.|.+||+.+..... ....|++++|||+| +++|..||.+++
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 9754433323333446777766654 48889999999999999776432 45689999999999 778999999999
Q ss_pred EEecCCCce--eEEEec----c--ccceeEEEeeecCCCCcEEEEEe
Q 008005 468 WSIESDPKL--VSRYKG----H--KRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 468 wd~~~~~~~--~~~~~~----~--~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
|+.... .. ...+.. + ......+....|.+++.++++-+
T Consensus 187 ~~~~~~-~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 187 FAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCCc-cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 998876 32 444411 0 01112334444467888887643
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=1.3e-08 Score=99.63 Aligned_cols=220 Identities=9% Similarity=0.000 Sum_probs=144.3
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 274 EVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 274 ~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
-..+.+|+|++. ++++...++.|..|+..++ ... .+. ....+.+++|+++++++++. .+ .|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~~---~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-RKT---VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EEE---EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cEE---EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE
Confidence 456788999754 5666667889999998754 222 122 34579999999999877764 34 4999999888764
Q ss_pred EEEecC----CCeEEEEEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-c
Q 008005 353 HVYEKT----GVGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-R 421 (581)
Q Consensus 353 ~~~~~~----~~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~ 421 (581)
...... ...+.++.++|+|+.+++... .+.|..++ ++....... .......++|+|+++.++.+. .
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETT
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEECC
Confidence 433221 246889999999986665432 25666677 455443322 222567899999999876654 5
Q ss_pred CCeEEEEECC--CC-e----eeEEe---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008005 422 EAAILLLDRE--AN-F----ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 422 dg~i~i~d~~--~~-~----~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++.|.+||.. ++ . ..+.. ....+..++++++|++.++...++.|..||.. + +.+..+..+... ...
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g-~~~~~i~~~~~~--~~~ 275 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G-NHIARYEVPGKQ--TTC 275 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C-CEEEEEECSCSB--EEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C-CEEEEEECCCCC--cEE
Confidence 6899999985 44 2 12221 23557889999999877776667889999984 3 555666554433 223
Q ss_pred eeecCCCCcEEEEEeC
Q 008005 492 SCFGGFEQAFIASGSE 507 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~ 507 (581)
+++..+++..|+.++.
T Consensus 276 ~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 276 PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEESTTSCEEEEEEB
T ss_pred EEEecCCCCEEEEEec
Confidence 3342377666654443
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=7.3e-09 Score=103.54 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=164.0
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
++..++.++.++.|..+|..++... ............... .+..++.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVA---WQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEE---EEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---EEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4557778888999999999876432 222222111111112 24578888889999999999999888776543211
Q ss_pred -----EEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccc-------cEEEEEEe--eCCCEEEEEEcCCeEEEE
Q 008005 363 -----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL-------RISDMAIT--DDGKRIISICREAAILLL 428 (581)
Q Consensus 363 -----~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~i~~~--~~~~~l~~~~~dg~i~i~ 428 (581)
..... .+..+++++.++.|..+|..+++..-....... .+..+... -.+..+++++.++.+..+
T Consensus 177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 11122 245788888899999999987665432221110 00000011 124678888889999999
Q ss_pred ECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
|..++...+.........+.. ++..+++++.++.+..+|..++ +.............. ... ..+..|+.++.+
T Consensus 255 d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~-~~~---~~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRLLT-SPV---LYNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSCCC-CCE---EETTEEEEECTT
T ss_pred ECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCccc-CCE---EECCEEEEEeCC
Confidence 999888555544444555544 4667888888999999999887 444444321111100 001 124678889999
Q ss_pred CcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 509 SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|.|+++|..+|+.+.........+.+.....++ .|+.++.+|.|..|+
T Consensus 328 g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence 999999999999988776533333321111233 678889999999886
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=8.8e-10 Score=118.63 Aligned_cols=288 Identities=10% Similarity=0.036 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC-----------CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK-----------PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
+..|++++.++.|.-+|..++. .+..+..... ....+++ ++..+++++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~---~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGN---RIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTE---EEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCc---EEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 4456667778889999988763 2333322211 0012222 4568888899999999999999999
Q ss_pred EEEecC-C----CeEEEEEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccC-cc-------------------
Q 008005 353 HVYEKT-G----VGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQ-KT------------------- 401 (581)
Q Consensus 353 ~~~~~~-~----~~v~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~-~~------------------- 401 (581)
..+... . ..+.+.-.. .+..+++++. ++.|+.||..+++..-.... ..
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 888754 2 112111111 2456666654 68999999987765422211 00
Q ss_pred ------------ccEEEEEEeeCCCEEEEEEcCC-------------------eEEEEECCCCeeeEEecC---------
Q 008005 402 ------------LRISDMAITDDGKRIISICREA-------------------AILLLDREANFERWIEEE--------- 441 (581)
Q Consensus 402 ------------~~i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~--------- 441 (581)
.....+++++++..++.++.++ .|..+|.++++..+....
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 0113578889999998887664 599999999885443211
Q ss_pred --CceEEEEECCCC---CEEEEEeeCCcEEEEEecCCCceeEEEeccccc-e-------eEEE-----------------
Q 008005 442 --EVITSFSLSKDN---KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-R-------FVIR----------------- 491 (581)
Q Consensus 442 --~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~-------~~i~----------------- 491 (581)
.....+....+| ..+++++.+|.++++|..++ +++..+...... . ..+.
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122233333467 67888999999999999988 555444322100 0 0000
Q ss_pred -------eeecCCCCcEEEEEeC-------------------------------------------CCcEEEEeCCCCce
Q 008005 492 -------SCFGGFEQAFIASGSE-------------------------------------------DSQVYIWHRYTGEL 521 (581)
Q Consensus 492 -------~~~~~~~~~~l~sgs~-------------------------------------------dg~I~iwd~~~~~~ 521 (581)
...++|+..++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1122566677766543 27899999999999
Q ss_pred EEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC------CCceEEecCCC
Q 008005 522 VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ------SNGIVHHCNGR 580 (581)
Q Consensus 522 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~------~~~~~~~~~G~ 580 (581)
+-.+.. ..++.+..+...+ .+++.++.||.+++||..+++...... ..-+.+..+|+
T Consensus 470 ~W~~~~-~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 470 AWSVEH-VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EEEEEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EeecCC-CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 887763 3445555566666 578888999999999999999887654 23344556664
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=2.4e-09 Score=115.47 Aligned_cols=262 Identities=13% Similarity=0.089 Sum_probs=166.3
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC---CCCeEEEee-----CCCcEEEEEcCCCcEEEE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCG-----QEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~-----~dg~i~vwd~~~~~~~~~ 354 (581)
++..+++++.|+.|..+|..++...-... ...+......+..+| ++..++..+ .+|.|..||..+|+.+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~-~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVD-TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeec-CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 35578888899999999998875432111 110111111112222 444444322 378999999999999887
Q ss_pred EecCC-------------------------------CeEEEEEEecCCCeEEEEeCCCc-------------------EE
Q 008005 355 YEKTG-------------------------------VGLISCGWFLDGGGIFAGMTDKS-------------------IC 384 (581)
Q Consensus 355 ~~~~~-------------------------------~~v~~~~~~~~~~~l~sg~~dg~-------------------i~ 384 (581)
+.... .....+++.|++..++.++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75210 01125678888899999888764 99
Q ss_pred EEeCCCCeEEeeccC--c-------cccEEEEEEeeCCC---EEEEEEcCCeEEEEECCCCeeeEEecCC----------
Q 008005 385 LWDLDGRELESWKGQ--K-------TLRISDMAITDDGK---RIISICREAAILLLDREANFERWIEEEE---------- 442 (581)
Q Consensus 385 vwd~~~~~~~~~~~~--~-------~~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 442 (581)
.||.++++..-.... + ...+.......+|+ .++.++.+|.++++|.++++........
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 999998776533221 1 11222223334665 7888999999999999998733111000
Q ss_pred -------------------------------ceEEEEECCCCCEEEEEee------------------------------
Q 008005 443 -------------------------------VITSFSLSKDNKYLLVNLI------------------------------ 461 (581)
Q Consensus 443 -------------------------------~i~~~~~sp~~~~l~~~~~------------------------------ 461 (581)
.-..++++|+..++++...
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0113688898888887643
Q ss_pred ---------------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008005 462 ---------------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 462 ---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 526 (581)
+|.|+.||+.++ +.+-.+..+..... . .....+.+++.|+.||.++.||.++|+.+.++.
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~---g-~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNG---G-TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCC---C-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccC---c-cceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 267999999988 65555554432211 1 113356788999999999999999999998887
Q ss_pred cCCCC-EEEEEEcCCCCcEEEEEEC
Q 008005 527 GHSGS-VNCVSWNPANLHMLASASD 550 (581)
Q Consensus 527 ~h~~~-v~~l~~~p~~~~~l~s~s~ 550 (581)
...+. ..-+.|..+|..++++.+.
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCCcccCceEEEECCEEEEEEEec
Confidence 55332 2446777888556665543
No 226
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=9.2e-09 Score=102.80 Aligned_cols=268 Identities=6% Similarity=-0.011 Sum_probs=168.3
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC-------CCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
++..+++++.++.|..+|..++... -...+... ...+.+.. ..++..+++++.++.|..+|..+|+.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI-WSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE-EEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee-eeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 3557777888899999999876432 11122111 22232221 124567888889999999999999988777
Q ss_pred ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccE------EEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 356 EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI------SDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i------~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
............ .+..+++++.++.|..+|..+++..-...... .+ ...... +..+++++.++.+..+|
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 654322212222 24588889999999999998766543332221 11 112222 45788888899999999
Q ss_pred CCCCeeeEEecCC-c--------eEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCC
Q 008005 430 REANFERWIEEEE-V--------ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 430 ~~~~~~~~~~~~~-~--------i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
..++...+..... + +..+...| .+..+++++.++.+..+|..++ +......... ... . ..+
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~~--~~~--~---~~~ 276 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELGS--VND--F---IVD 276 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCCC--EEE--E---EEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCCC--CCC--c---eEE
Confidence 9988744432211 0 00011122 3567788888999999999887 4444433211 111 1 123
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEecc-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccccccc
Q 008005 499 QAFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
+..++.++.++.|+.+|..+|+.+..... ....+...... + ..|+.++.+|.|.++|..+++.....
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 56788888999999999999998876652 22223333332 3 36888889999999999999876543
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=1.3e-09 Score=117.59 Aligned_cols=289 Identities=8% Similarity=0.030 Sum_probs=179.4
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC----------CE-EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----------PV-FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~V-~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
+..+++++.++.|.-+|..++.. +..+..+.. .+ ..+.. ++..+++++.|+.|..+|..+|+.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL---IWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE---EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce---eEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 55677777888999999987743 233322211 00 11122 3567888889999999999999998
Q ss_pred EEEecC-C-CeEEEEEEec--CCCeEEEEe------CCCcEEEEeCCCCeEEeeccC-c---------------------
Q 008005 353 HVYEKT-G-VGLISCGWFL--DGGGIFAGM------TDKSICLWDLDGRELESWKGQ-K--------------------- 400 (581)
Q Consensus 353 ~~~~~~-~-~~v~~~~~~~--~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~-~--------------------- 400 (581)
..+... . .....+...| .+..+++++ .+|.|+.||..+++..-.... .
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 877653 1 0000111111 134555554 368999999988765422110 0
Q ss_pred ---------cccEEEEEEeeCCCEEEEEEcCCe-------------------EEEEECCCCeeeEEecC-----------
Q 008005 401 ---------TLRISDMAITDDGKRIISICREAA-------------------ILLLDREANFERWIEEE----------- 441 (581)
Q Consensus 401 ---------~~~i~~i~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~----------- 441 (581)
......++++++...++.++.++. |..+|.++++..+....
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 001125788888889999887764 99999999985443211
Q ss_pred CceEEEEECCCCC---EEEEEeeCCcEEEEEecCCCceeEEEecccc-cee------------------------EEE--
Q 008005 442 EVITSFSLSKDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKR-ARF------------------------VIR-- 491 (581)
Q Consensus 442 ~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~------------------------~i~-- 491 (581)
..+.......+|+ .+++++.+|.++++|..++ +++........ ... .+.
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 1122222223554 7888899999999999988 54432221110 000 000
Q ss_pred ---------eeecCCCCcEEEEEeC---------------------------------------------CCcEEEEeCC
Q 008005 492 ---------SCFGGFEQAFIASGSE---------------------------------------------DSQVYIWHRY 517 (581)
Q Consensus 492 ---------~~~~~~~~~~l~sgs~---------------------------------------------dg~I~iwd~~ 517 (581)
...++|+..++++... +|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 0122555566665422 3789999999
Q ss_pred CCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC------CCceEEecCCC
Q 008005 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ------SNGIVHHCNGR 580 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~------~~~~~~~~~G~ 580 (581)
+|+.+-.+..+. ++..-.+...+ .+++.++.||.|+.||.++++.+.+.. ..-+.+..||+
T Consensus 464 tG~~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 464 KQQAAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCeEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCE
Confidence 999988877554 33333555566 589999999999999999999886544 34455667775
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=3.2e-09 Score=114.26 Aligned_cols=268 Identities=13% Similarity=0.071 Sum_probs=174.1
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC-C----CCEEEEEeCC--CCCeEEEeeC------CCcEEEEEcCCC
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-R----KPVFTVSWSP--NDHQLLTCGQ------EEAIRRWDVNSG 349 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h-~----~~V~~l~~sp--~~~~l~s~~~------dg~i~vwd~~~~ 349 (581)
++..|++++.|+.+..+|..++... ..+..+ . ..+.+ +| .+..+++++. +|.|..||..+|
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~---~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG 200 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEV---WHQNTFEGQKGSLTITG---APRVFKGKVIIGNGGAEYGVRGYITAYDAETG 200 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE---EEEETTTTCCSSCBCCS---CCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEE---eeecCCcCcCcCccccc---CcEEECCEEEEEecccccCCCCEEEEEECCCC
Confidence 4567888889999999999887432 333322 1 11111 11 2345555543 689999999999
Q ss_pred cEEEEEecCCCe--------------------------------EEEEEEecCCCeEEEEeCCC----------------
Q 008005 350 ECLHVYEKTGVG--------------------------------LISCGWFLDGGGIFAGMTDK---------------- 381 (581)
Q Consensus 350 ~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~sg~~dg---------------- 381 (581)
+.+..+...... ...+++.+++..++.+..++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 998877643211 12467888889999887664
Q ss_pred ---cEEEEeCCCCeEEeeccC--c-------cccEEEEEEeeCC---CEEEEEEcCCeEEEEECCCCeeeEEecCC----
Q 008005 382 ---SICLWDLDGRELESWKGQ--K-------TLRISDMAITDDG---KRIISICREAAILLLDREANFERWIEEEE---- 442 (581)
Q Consensus 382 ---~i~vwd~~~~~~~~~~~~--~-------~~~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 442 (581)
.|..+|.++++..-.... + .....-+....+| ..++.++.+|.++++|..+++........
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 499999988776433221 1 1122333444577 67889999999999999998733221111
Q ss_pred ---------ce------------------------EEEEECCCCCEEEEEeeC---------------------------
Q 008005 443 ---------VI------------------------TSFSLSKDNKYLLVNLIN--------------------------- 462 (581)
Q Consensus 443 ---------~i------------------------~~~~~sp~~~~l~~~~~d--------------------------- 462 (581)
.+ ..++++|+..++++...+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 01 156889998888886542
Q ss_pred ----------------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008005 463 ----------------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 463 ----------------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 526 (581)
+.|..||+.++ +.+-.+..... .... .....+.+++.++.||.+++||..+|+.+..+.
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~-~~~g---~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSP-WNGG---TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEESSS-CCCC---EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccCCCCCccEEEEEeCCCC-cEEeecCCCCC-CcCc---ceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 67999999887 55555443221 1111 113456788889999999999999999999887
Q ss_pred cCC-CCEEEEEEcCCCCcEEEEEEC----------------CCcEEEecCCc
Q 008005 527 GHS-GSVNCVSWNPANLHMLASASD----------------DRTIRIWGLDQ 561 (581)
Q Consensus 527 ~h~-~~v~~l~~~p~~~~~l~s~s~----------------Dg~I~iW~~~~ 561 (581)
... ....-+.|.++|..++++.+. .+.+..|.+..
T Consensus 516 ~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 516 TGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 543 223345667888445555433 36788888763
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.20 E-value=9.7e-10 Score=108.28 Aligned_cols=256 Identities=9% Similarity=-0.024 Sum_probs=164.6
Q ss_pred cccceeecccccCcEEEEEEcCCCCEEEEEe----------CCCeEEEEEcccCCeeeEEEEecCC-------CCCEEEE
Q 008005 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTV 323 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l 323 (581)
..+.+.++..-..+ .+.++|||++++++. .++.|.+||..+... ..++... ......+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g~~P~~i 129 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBSCCTTSE
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccCCCcceE
Confidence 34556666544455 799999999888876 368899999988743 3333221 1234578
Q ss_pred EeCCCCCeEEEeeC--CCcEEE--EEcCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCC-----CeE
Q 008005 324 SWSPNDHQLLTCGQ--EEAIRR--WDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDG-----REL 393 (581)
Q Consensus 324 ~~sp~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~-----~~~ 393 (581)
+++|||++++++.. +..+.+ +|..+ +..+..... ....|++. .+++.+.||.+.+.|+.. ++.
T Consensus 130 a~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 130 GNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 99999999998875 457888 99877 444433221 11234443 445566788888888876 333
Q ss_pred Ee----eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEe--------------cCCceEEEEECCCCCE
Q 008005 394 ES----WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKY 455 (581)
Q Consensus 394 ~~----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~sp~~~~ 455 (581)
.. .......+. . .+++..++..+. +.+.+.|..+....... .......++++|+++.
T Consensus 203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 21 011111222 3 667777777777 99999998764321111 0111222789999999
Q ss_pred EEEEee-C--------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCc-EEEEEe-CCCcEEEEeCCCCceEEE
Q 008005 456 LLVNLI-N--------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRYTGELVLA 524 (581)
Q Consensus 456 l~~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~ 524 (581)
++++.. . +.+.++|+.+. +.+..+..... .....++++|+ ++++.. .++.|.++|+.+++.+..
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~~----p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEEE----ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCCC----cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 888654 2 35679999998 66666654332 12233388887 556666 599999999999999999
Q ss_pred eccCCCCEEEEEEcC
Q 008005 525 LAGHSGSVNCVSWNP 539 (581)
Q Consensus 525 ~~~h~~~v~~l~~~p 539 (581)
+..... ..++++.+
T Consensus 353 I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 353 VELDKG-PESLSVQN 366 (368)
T ss_dssp CCCCSC-CCEEECCC
T ss_pred EECCCC-CCEEEeec
Confidence 986543 45666554
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=8.4e-09 Score=105.65 Aligned_cols=232 Identities=15% Similarity=0.096 Sum_probs=161.2
Q ss_pred CCCeEEEeeC-CCcEEEEEcCCCcEEEEEecC-CCeEEEEEE-e-cCCCeEEEEe------------------CCCcEEE
Q 008005 328 NDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT-GVGLISCGW-F-LDGGGIFAGM------------------TDKSICL 385 (581)
Q Consensus 328 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~sg~------------------~dg~i~v 385 (581)
||++++.+.. ++.|.+.|+.+.++...+... ......+++ . |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7888877765 456999999999988866543 345778887 4 8999999885 2457999
Q ss_pred EeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCC--------------------------------------eEEE
Q 008005 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA--------------------------------------AILL 427 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--------------------------------------~i~i 427 (581)
+|.++.++........ ....++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999877655544322 456788999999999888543 4777
Q ss_pred EECCC--Ce--eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC-----------ceeEEEeccccceeEEE
Q 008005 428 LDREA--NF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP-----------KLVSRYKGHKRARFVIR 491 (581)
Q Consensus 428 ~d~~~--~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~i~ 491 (581)
.|.++ +. ...+.......++.++|||+++++++. +..|.++|+.+.. ..........+ ...
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g---P~h 335 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG---PLH 335 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC---EEE
T ss_pred EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC---cce
Confidence 78776 32 345556667889999999999888764 7899999998641 12222222222 233
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCC----------CceEEEeccCCCCE-----EEEEEcCCCCcEEEEEEC---CCc
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYT----------GELVLALAGHSGSV-----NCVSWNPANLHMLASASD---DRT 553 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~---Dg~ 553 (581)
..| +++|...++.--|++|.+||+.+ .+.+.++..|-.+- .++..+||| ++|+++.. |+.
T Consensus 336 ~aF-~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 336 TAF-DGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRF 413 (595)
T ss_dssp EEE-CTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSS
T ss_pred EEE-CCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCCCcccc
Confidence 444 88995555666799999999877 56777777665432 123468999 57776643 432
Q ss_pred ----------EEEecCCccccc
Q 008005 554 ----------IRIWGLDQINMK 565 (581)
Q Consensus 554 ----------I~iW~~~~~~~~ 565 (581)
-.++|+..+++.
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCE
T ss_pred ccCCCCCCCcceEEEcCCCcEE
Confidence 178898766644
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.13 E-value=4.7e-11 Score=119.01 Aligned_cols=223 Identities=9% Similarity=0.012 Sum_probs=123.1
Q ss_pred CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE-eeccCccccEEE
Q 008005 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE-SWKGQKTLRISD 406 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~ 406 (581)
++..+++++.||.|..||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++.. .+.......+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 34555555567778888889999999999765542 222211111110
Q ss_pred -EEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008005 407 -MAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 407 -i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
..+. ++..+++++.++.|+.||..++...+...... ...++|++..+++++.++.|+.||..++ +....+.....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~~ 161 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATYFDY 161 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSS-SCCCEEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEecccc
Confidence 0111 34567888889999999999887433322111 2345678889999999999999999887 44444332111
Q ss_pred ceeEEEeeecCCCC---cEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEE-EEEEcCCCCcEEEE--EECCCcEEEecC
Q 008005 486 ARFVIRSCFGGFEQ---AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVN-CVSWNPANLHMLAS--ASDDRTIRIWGL 559 (581)
Q Consensus 486 ~~~~i~~~~~~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s--~s~Dg~I~iW~~ 559 (581)
.......+. ..+++++.||.|+.||..+|+.+..+.. .+++. ...+++++ ...+. ...++.++.+|.
T Consensus 162 -----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg-~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 162 -----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG-LRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp -----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS-CEEECCEEEEHHHHHHHHH
T ss_pred -----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc-eEeccceeecccceeeeeh
Confidence 111112221 4577789999999999999998877764 34443 34556666 22110 011345555665
Q ss_pred Cccc
Q 008005 560 DQIN 563 (581)
Q Consensus 560 ~~~~ 563 (581)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5555
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.11 E-value=1.2e-07 Score=89.70 Aligned_cols=250 Identities=9% Similarity=-0.018 Sum_probs=156.5
Q ss_pred CEEEEEeCCCeEEEEEcccCCee--eEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEEEEecCCCe
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVG 361 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~ 361 (581)
.+|..+.. +.|+.+++...... .....+......+.+++|++++..|+.+ ..++.|.+++...+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 44555543 46888887643210 0011111112346799999976655544 45689999998766544433333356
Q ss_pred EEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCeeeE
Q 008005 362 LISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERW 437 (581)
Q Consensus 362 v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 437 (581)
...+++.+++..++.+. ..+.|.++++++................++++|++..++.+.. .+.|..++........
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 78999999776666554 4678999999765433333222246789999997777666654 3689888887654332
Q ss_pred E--ecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 438 I--EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 438 ~--~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
. ........+++++++..|+++.. .+.|..+|..+. ...........+ ..+ +. . .+.++++...++.|.++
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~P-~gi--~~-d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYP-FAV--TS-Y-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSE-EEE--EE-E-TTEEEEEETTTTEEEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCCc-eEE--EE-e-CCEEEEEECCCCeEEEE
Confidence 2 22346789999998777766554 578999998753 222223222111 222 22 2 34455555566899999
Q ss_pred eCCCCceEEEeccCC-CCEEEEEEcCCC
Q 008005 515 HRYTGELVLALAGHS-GSVNCVSWNPAN 541 (581)
Q Consensus 515 d~~~~~~~~~~~~h~-~~v~~l~~~p~~ 541 (581)
|..+++.+..+.... ....++++.|++
T Consensus 235 d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eCCCCCceEEEccccccccceeeecCcc
Confidence 999999888886443 246788888876
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=3.8e-09 Score=103.29 Aligned_cols=268 Identities=13% Similarity=0.074 Sum_probs=164.9
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
+...+.++...++|.+++ ++.+ +..+|.. +... ..+...........+. +..+..++.++.|..+|.. ++
T Consensus 58 ~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~~-g~~~---~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYF-GSDK--VYAINPD-GTEK---WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp GGEEEECCEETTTTEECC-SSCE--EEEECCC-GGGG---GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC
T ss_pred CCCcccceEEecCCcEEE-ecCc--EEEECCC-CcEE---EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC
Confidence 445567788877776444 4444 7778752 2211 1111111112222232 4567778888999999988 88
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
...........+.++...+++ .++.++.++.|..+|.. +............+.++...+++...+ ++ +.|..+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d- 201 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN- 201 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-
T ss_pred EEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-
Confidence 777766555555556665555 47778888999999998 444332323334567777777777544 44 8899999
Q ss_pred CCCeeeE--EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC
Q 008005 431 EANFERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 431 ~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
.++...+ ......+.++..++++. +.+++.++.+..+|.. + .....+........ ......+ ..|+.++.+
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~---~~~~~~~-g~l~v~t~~ 274 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-G-TEKWRFKTGKRIES---SPVIGNT-DTIYFGSYD 274 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-S-CEEEEEECSSCCCS---CCEECTT-SCEEEECTT
T ss_pred CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-C-CEeEEeeCCCCccc---cceEcCC-CeEEEecCC
Confidence 5544222 22335577888888775 5556667888888743 3 44444443322111 1111333 456778888
Q ss_pred CcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 509 SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
|.|+.+|. +++.+..+......+.++...+++ .|..++.+|.+++......+.
T Consensus 275 ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 275 GHLYAINP-DGTEKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp CEEEEECT-TSCEEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEEEC-----
T ss_pred CCEEEECC-CCcEEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEEecccccc
Confidence 89999995 788777776666677888887877 466788999999987765443
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=7.6e-08 Score=95.25 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=146.7
Q ss_pred CCCCEEEE-EeCCCeEEEEEcccC-CeeeEEEEec------C-CCCCEEEEEeCCCCCeEEEeeCC------CcEEEEEc
Q 008005 282 HDGKYLAS-SSKDQSAIIWEVKED-GQVSLKHRLS------G-HRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDV 346 (581)
Q Consensus 282 ~~g~~las-gs~dg~i~iwd~~~~-~~~~~~~~~~------~-h~~~V~~l~~sp~~~~l~s~~~d------g~i~vwd~ 346 (581)
+++++|+. |..+++|.|+|+.+. .+.+..+++. . ....-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77886665 557789999999643 3344555542 0 11134567788999 77766555 78999999
Q ss_pred CCCcEEEEEecCC---CeEEEEEEecCCCeEEEEe-------------------CCCcEEEEeCCCCeEEeeccCc--cc
Q 008005 347 NSGECLHVYEKTG---VGLISCGWFLDGGGIFAGM-------------------TDKSICLWDLDGRELESWKGQK--TL 402 (581)
Q Consensus 347 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~~--~~ 402 (581)
.+++.+..+.... .--..+.|+|+++.+++.. .+..|.+||+.+++........ ..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999999887432 2234588899999888874 3689999999887665544332 12
Q ss_pred cEEEEEE--eeCCCEEEEEEc------CCeEEEEECCCCe---eeEE--ec-----------------CCceEEEEECCC
Q 008005 403 RISDMAI--TDDGKRIISICR------EAAILLLDREANF---ERWI--EE-----------------EEVITSFSLSKD 452 (581)
Q Consensus 403 ~i~~i~~--~~~~~~l~~~~~------dg~i~i~d~~~~~---~~~~--~~-----------------~~~i~~~~~sp~ 452 (581)
....+.| +|+++++++++. +++|.+|....+. ...+ .. ......+.+|+|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4555656 999999888875 5578766554433 1111 00 245778999999
Q ss_pred CCEEEEEee-CCcEEEEEecCCC--ceeEEEecccc--------ce---eEEEeeecCCCCcEEEEEe
Q 008005 453 NKYLLVNLI-NQEIHLWSIESDP--KLVSRYKGHKR--------AR---FVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 453 ~~~l~~~~~-d~~i~iwd~~~~~--~~~~~~~~~~~--------~~---~~i~~~~~~~~~~~l~sgs 506 (581)
+++|+++.. .+.|.+||+.... +.+..+..... .. ..-+....+++|++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999998876 6799999986332 33433332200 00 0011223388999998887
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.06 E-value=8e-11 Score=117.34 Aligned_cols=258 Identities=13% Similarity=-0.024 Sum_probs=135.4
Q ss_pred CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCC-e
Q 008005 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGV-G 361 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~ 361 (581)
++..+++++.||.|+.||..++.. ...+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 577899999999999999987743 333333 4455555566787888888999999999999987666543311 1
Q ss_pred EE-EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEec
Q 008005 362 LI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE 440 (581)
Q Consensus 362 v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 440 (581)
+. +... .++..+++++.++.|+.||..+++..-....+. ...++|++..+++++.++.|+.||.+++...+...
T Consensus 83 ~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 83 VQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred cccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 10 0011 135578888899999999998877643333221 23456688899999999999999999887332211
Q ss_pred CCceEEEEECCCC---CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEE----EEEeCCCcEEE
Q 008005 441 EEVITSFSLSKDN---KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI----ASGSEDSQVYI 513 (581)
Q Consensus 441 ~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l----~sgs~dg~I~i 513 (581)
........++++. ..+++++.++.++.||..++ +.+..+.... .. +.....+.++... +.+ ++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~-pv--~~~~~~~~dg~~~v~~~~~~--~~~l~~ 231 (369)
T 2hz6_A 158 YFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS-PV--VAFYVWQREGLRKVMHINVA--VETLRY 231 (369)
T ss_dssp EEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS-CE--EEEEECTTSSCEEECCEEEE--HHHHHH
T ss_pred cccccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC-ce--EEEEEecCCceEeccceeec--ccceee
Confidence 1112233344432 56777888999999999887 5555544222 21 1222224444321 111 334566
Q ss_pred EeCCCCc----eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 514 WHRYTGE----LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 514 wd~~~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+|..+|+ .+..+... +.+.+.. . .+ ..|+.++.||.|..++..
T Consensus 232 ld~~tG~~~~~~~W~~~~~-~~~~sp~-~-~~-g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 232 LTFMSGEVGRITKWKYPFP-KETEAKS-K-LT-PTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHTSCCCCC-CHHHHHH-H-SE-EEECBEECSSCEECCEEE
T ss_pred eehhcCCcccceeeeeccC-ccccccc-c-cc-ceEEEecccCCEEecCcc
Confidence 6666665 33222211 1111000 0 12 367777888888887775
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=3.7e-09 Score=103.45 Aligned_cols=261 Identities=9% Similarity=0.049 Sum_probs=156.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEec
Q 008005 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 278 l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
+.+..++. +..++.++.|..|| .++.. ......+...+.++...+++. +..++.+ +..+|. +++....+..
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV---KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCE---EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcE---EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence 34445554 55666788899999 65532 233333334456677766665 4445544 888885 5554333322
Q ss_pred CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e-
Q 008005 358 TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E- 435 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~- 435 (581)
........... +..+++++.++.|..+|.. +............+.++...+++. ++.++.++.|..+|.. +. .
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE
Confidence 22222222233 5678888889999999988 443322222333456667776776 6667788999999998 54 2
Q ss_pred eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 436 RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
........+.++...+++...+ ++ +.+..|| .++ .....+...... +......+++ .|..++.++.|..+|
T Consensus 171 ~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~~---~~~~~~~~~g-~l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYWT---VTRPAISEDG-TIYVTSLDGHLYAIN 241 (330)
T ss_dssp EEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSCC---CSCCEECTTS-CEEEEETTTEEEEEC
T ss_pred EEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCcc---eeceEECCCC-eEEEEcCCCeEEEEC
Confidence 2223344566777777777544 44 8899999 554 444444433222 2222224455 456677788899998
Q ss_pred CCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 516 RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 516 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+++.+..+......+.++...+++ .|..++.+|.|..+|. +++..
T Consensus 242 -~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 242 -PDGTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -TTSCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEE
T ss_pred -CCCCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEE
Confidence 4666666666555555566666666 4667788889999996 45443
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=2e-08 Score=98.98 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=144.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeC-----CCeEEEEEcccCCeeeEEEEec------CCCCCEEEEEeCCCCCeE-EEee
Q 008005 269 EAHSDEVWFLQFSHDGKYLASSSK-----DQSAIIWEVKEDGQVSLKHRLS------GHRKPVFTVSWSPNDHQL-LTCG 336 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~-----dg~i~iwd~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~l-~s~~ 336 (581)
.+|-..+..++++++|+++++-.. ++.|.+||..++. ....+. .+...+..+++++++..+ ++..
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence 356778999999999986665543 5789999998653 222222 123456899999865454 5444
Q ss_pred ---CCCcEEEEEcCCCcEEEEEecCCCeEE-EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC
Q 008005 337 ---QEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 337 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~ 412 (581)
.++.|.+||+.+++..+.+..|..... ...+.+++..+.+.+.++.+..|.. .+..++++|+
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~d 205 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAE 205 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTT
T ss_pred ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--------------ccceeEeccC
Confidence 578999999999987776654321100 1334456766777777887766531 4678999999
Q ss_pred CCEEEEEEcCC-eEEEEECCC---Ce---------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008005 413 GKRIISICREA-AILLLDREA---NF---------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 413 ~~~l~~~~~dg-~i~i~d~~~---~~---------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
++.|+.+...+ .++.++... .. .....+......++++++|+++++...++.|.+||..++ +....
T Consensus 206 g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~~ 284 (343)
T 2qe8_A 206 NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKLL 284 (343)
T ss_dssp SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEEE
Confidence 99998887665 666665321 00 122234456778999999999988888999999998443 33222
Q ss_pred EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
.. .....+...+++ .+++.++++.+..+.+.+|
T Consensus 285 ~~-~~~~~~p~~va~-~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 285 VT-DEKLSWTDSFNF-GSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EE-CGGGSCEEEEEE-CTTSCEEEEECCGGGSGGG
T ss_pred EE-CCceecCCeeEE-CCCCcEEEEeCcccccccc
Confidence 22 211222233333 5677777776655444333
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=2.8e-07 Score=89.79 Aligned_cols=235 Identities=10% Similarity=0.096 Sum_probs=152.1
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecC--------------------CCeEEEEEEecCCCeEEEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--------------------GVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~sg~ 378 (581)
...+++|.+++++++++..++.|..||..+++.. .+... ...+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3467889999987888888999999998766543 22210 12468899987445666666
Q ss_pred CCCcEEEEeCCCCeEEeecc----CccccEEEEEEee-CCCEEEEEEc-----------------CCeEEEEECCCCee-
Q 008005 379 TDKSICLWDLDGRELESWKG----QKTLRISDMAITD-DGKRIISICR-----------------EAAILLLDREANFE- 435 (581)
Q Consensus 379 ~dg~i~vwd~~~~~~~~~~~----~~~~~i~~i~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~~- 435 (581)
..+.|..+|..++....+.. ........+++.+ +|+..++-.. ++.|..||..++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66668889987664433321 1123578899999 8976665432 36799999877663
Q ss_pred eEEecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCc-eeEEEeccccceeEEEeeecCCCCcEEEEEeC------
Q 008005 436 RWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------ 507 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~------ 507 (581)
...........++++|++++|+++ +..+.|..|++..... ....+..... . - -+...++|++.++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P--~-gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P--G-NIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E--E-EEEECTTSCEEEEEEEETTSST
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C--C-CeEECCCCCEEEEecCcccccc
Confidence 233333456789999999977766 4568999999875311 1122211111 1 1 1233678886666544
Q ss_pred ----CCcEEEEeCCCCceEEEeccCC----CCEEEEEEcCCCCcEEEEEECCCcEEEecCCc
Q 008005 508 ----DSQVYIWHRYTGELVLALAGHS----GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 508 ----dg~I~iwd~~~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.+.|..+|. .++.+..+.... ..++++++ .++ +++++....+.|..+++..
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCSEEEEEEC--
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCCceEEEeccc
Confidence 467888986 477777665432 35677776 355 6777777788999998864
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=2.8e-06 Score=93.68 Aligned_cols=278 Identities=8% Similarity=0.088 Sum_probs=177.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
|.++...+++.+.+ |+.++-+..|+..++. +.... ...+...|.++...+++.+.+ ++.++-+..||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~-~~~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT-FEKVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCC-EEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCe-EEEec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88888888887555 5555458888876542 21111 112346788888877776555 44444588999887765443
Q ss_pred Eec-------CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-------CccccEEEEEEeeCCCEEEEEE
Q 008005 355 YEK-------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 355 ~~~-------~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
... ....|.++...+++. +..|+.+ -|.+||..+........ .....|.++...++|. +..|+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt 327 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGT 327 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEE
Confidence 221 135688888877765 5556655 58999988777665432 1234799999998886 55677
Q ss_pred cCCeEEEEECCCCeeeEEe--------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc------cc
Q 008005 421 REAAILLLDREANFERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK------RA 486 (581)
Q Consensus 421 ~dg~i~i~d~~~~~~~~~~--------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~ 486 (581)
.++-|..|+..+....... ....|.++..+++|+ |.+|+.++.|..||..+. . ...+.... -.
T Consensus 328 ~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIG 404 (795)
T ss_dssp SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC-C-EEEECCC------CCS
T ss_pred CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCC
Confidence 7778888887665422221 234589999988876 555777778999987764 2 33332110 01
Q ss_pred eeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec----cCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcc
Q 008005 487 RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA----GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 487 ~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
...+.+.+...++.+|..|+.++-|.+||..+++...... .+...|.++...+++ .+.+ |+. +-|.+|+..++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NLWL-GTL-SALVRFNPEQR 481 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CEEE-EES-SCEEEEETTTT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CEEE-Eec-CceeEEeCCCC
Confidence 1123344435677757778887789999988876543322 234679999998888 4444 444 45888888765
Q ss_pred ccc
Q 008005 563 NMK 565 (581)
Q Consensus 563 ~~~ 565 (581)
+..
T Consensus 482 ~~~ 484 (795)
T 4a2l_A 482 SFT 484 (795)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=7e-06 Score=90.49 Aligned_cols=279 Identities=8% Similarity=0.070 Sum_probs=179.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec----CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS----GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~----~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
...|.++...++|.+ ..|+.++-|..|+..... +....... -....|.++...++|. |..|+.++-|..||..
T Consensus 309 ~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSCE-EEEESSSCEEEECGGGGS-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcCE-EEEECCCCeEEeCCCccc-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCC
Confidence 467999999999874 456666678899876432 21111111 1245699999988776 4556777779999988
Q ss_pred CCcEEEEEec--------CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc----CccccEEEEEEeeCCCE
Q 008005 348 SGECLHVYEK--------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG----QKTLRISDMAITDDGKR 415 (581)
Q Consensus 348 ~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~i~~~~~~~~ 415 (581)
+++....... ....|.++...+++..|..|+.++.|..||..++....+.. .....|.++...++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence 7765443211 23578888888777657888888889999998877665543 22347899998888875
Q ss_pred EEEEEcCCeEEEEECCCCeeeEEe--------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec---c-
Q 008005 416 IISICREAAILLLDREANFERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---H- 483 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~- 483 (581)
.+. +. +-+..||..++...... ....|.++..++++.+.+. +. +.+..||..+. .. .+.. .
T Consensus 466 wig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~-~~--~~~~~~~~~ 538 (795)
T 4a2l_A 466 WLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGL-DI--QKASILPVS 538 (795)
T ss_dssp EEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETT-EE--EECCCSCSC
T ss_pred EEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCC-eE--EEecCCCCC
Confidence 554 44 45888998877633222 1356889999988876554 44 66888998775 32 2321 0
Q ss_pred ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec--c-CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA--G-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
......+.+.+..++|.+.+ |+.+ -|..||..+++...--. + ....|.++...++| .+.+++ . +-|..|+..
T Consensus 539 ~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g-~lWi~t-~-~Gl~~~~~~ 613 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGIIWV-GTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG-RLWLST-N-RGISCFNPE 613 (795)
T ss_dssp GGGGSCEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS-CEEEEE-T-TEEEEEETT
T ss_pred CCCCCeeEEEEECCCCCEEE-EeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCC-CEEEEc-C-CceEEEcCC
Confidence 01111233444466777544 4444 58899987765443211 1 13568999999888 455544 3 457777877
Q ss_pred ccccc
Q 008005 561 QINMK 565 (581)
Q Consensus 561 ~~~~~ 565 (581)
+.+..
T Consensus 614 ~~~~~ 618 (795)
T 4a2l_A 614 TEKFR 618 (795)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 65543
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=1.8e-07 Score=95.90 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=159.6
Q ss_pred CCCCEEEEEeC-CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEe-C-CCCCeEEEee------------------CCCc
Q 008005 282 HDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW-S-PNDHQLLTCG------------------QEEA 340 (581)
Q Consensus 282 ~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~~~~l~s~~------------------~dg~ 340 (581)
+||+++..... ++.|.+.|+.+......+ .+. .......+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 47887777664 567999999876332222 332 2245788887 5 8999998884 2457
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC--------------------------------------c
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--------------------------------------S 382 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--------------------------------------~ 382 (581)
+.+.|.++.+....+.... ....+..+|+|+++++.+.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999999888877544 345677899999999888553 3
Q ss_pred EEEEeCCC--CeE-EeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCe-------------eeEEecCCceE
Q 008005 383 ICLWDLDG--REL-ESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-------------ERWIEEEEVIT 445 (581)
Q Consensus 383 i~vwd~~~--~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------------~~~~~~~~~i~ 445 (581)
|.+.|..+ +.. ...... .....++.++|||+++++++ .+.+|.++|..+.. ...........
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~ 334 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 334 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence 66667665 222 111111 12567899999999887776 57899999998652 22334556788
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCC---------CceeEEEeccccceeEEEe--eecCCCCcEEEEEeC---CCc-
Q 008005 446 SFSLSKDNKYLLVNLINQEIHLWSIESD---------PKLVSRYKGHKRARFVIRS--CFGGFEQAFIASGSE---DSQ- 510 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~sgs~---dg~- 510 (581)
.++|+|+|...++...++.|..||+... ...+.++..|..+...... ...+++|++|++... |..
T Consensus 335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~ 414 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFL 414 (595)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSC
T ss_pred eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccc
Confidence 9999999944445556999999999761 2567777766543221111 134789999998765 332
Q ss_pred ---------EEEEeCCCCc
Q 008005 511 ---------VYIWHRYTGE 520 (581)
Q Consensus 511 ---------I~iwd~~~~~ 520 (581)
-.++|+..++
T Consensus 415 ~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 415 NVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCSSCCEEEEEEECSSSS
T ss_pred cCCCCCCCcceEEEcCCCc
Confidence 1788886554
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.91 E-value=1.9e-06 Score=85.38 Aligned_cols=220 Identities=11% Similarity=0.006 Sum_probs=140.0
Q ss_pred CCCCeEEE-eeCCCcEEEEEcCCC----cEEEEEe------c-CCCeEEEEEEecCCCeEEEEeCC------CcEEEEeC
Q 008005 327 PNDHQLLT-CGQEEAIRRWDVNSG----ECLHVYE------K-TGVGLISCGWFLDGGGIFAGMTD------KSICLWDL 388 (581)
Q Consensus 327 p~~~~l~s-~~~dg~i~vwd~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~sg~~d------g~i~vwd~ 388 (581)
+++++|+. +..++.|.|+|+.+. +..+++. . .......+...|++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77777655 556789999999765 6666663 1 12245567778999 66665554 78999999
Q ss_pred CCCeEEeeccCc-c--ccEEEEEEeeCCCEEEEEE-------------------cCCeEEEEECCCCe-eeEEecC---C
Q 008005 389 DGRELESWKGQK-T--LRISDMAITDDGKRIISIC-------------------REAAILLLDREANF-ERWIEEE---E 442 (581)
Q Consensus 389 ~~~~~~~~~~~~-~--~~i~~i~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~-~~~~~~~---~ 442 (581)
.+.++....... . .--.++.|+|+++.+++.. ...+|.+||+.+++ ...+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 987765544322 1 1234688899999888874 36899999999876 3333332 2
Q ss_pred ceEEEEE--CCCCCEEEEEee------CCcEEEEEecCCCce--eEEE--eccc--c----------c-eeEEEeeecCC
Q 008005 443 VITSFSL--SKDNKYLLVNLI------NQEIHLWSIESDPKL--VSRY--KGHK--R----------A-RFVIRSCFGGF 497 (581)
Q Consensus 443 ~i~~~~~--sp~~~~l~~~~~------d~~i~iwd~~~~~~~--~~~~--~~~~--~----------~-~~~i~~~~~~~ 497 (581)
....+.| +|+++++++++. +++|.+|....+ .. .+.+ .... . . ......+..++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 3444545 999999888875 558877766542 11 1111 0000 0 0 01122233489
Q ss_pred CCcEEEEEeC-CCcEEEEeCCC---CceEEEeccCC--------------CCEEEEEEcCCCCcEEEEEE
Q 008005 498 EQAFIASGSE-DSQVYIWHRYT---GELVLALAGHS--------------GSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 498 ~~~~l~sgs~-dg~I~iwd~~~---~~~~~~~~~h~--------------~~v~~l~~~p~~~~~l~s~s 549 (581)
+|++|+++.. .+.|.+||+.. .+.+..+.... +....++++||| ++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence 9999988776 67999999853 34555443220 135889999999 5666665
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.89 E-value=1.7e-07 Score=100.65 Aligned_cols=276 Identities=12% Similarity=0.061 Sum_probs=168.0
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCC----------CE-EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----------PV-FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~V-~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
+..+++++.++.|.-+|..++..+ ..+..... .+ ..+++ .+..+++++.|+.|..+|..+|+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKEL---WRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEE---EEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhc---eEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 446677777888999998876432 22222111 00 11222 3557888889999999999999998
Q ss_pred EEEecCC----CeEEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccC---c------------------
Q 008005 353 HVYEKTG----VGLIS-CGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQ---K------------------ 400 (581)
Q Consensus 353 ~~~~~~~----~~v~~-~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~---~------------------ 400 (581)
..+.... ..+.+ ... .+..++++.. +|.|..+|..+++..-.... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 8876531 11111 111 2346666543 58999999987765432211 0
Q ss_pred ----------cccEEEEEEeeCCCEEEEEEcCC-------------------eEEEEECCCCeeeEEecC----------
Q 008005 401 ----------TLRISDMAITDDGKRIISICREA-------------------AILLLDREANFERWIEEE---------- 441 (581)
Q Consensus 401 ----------~~~i~~i~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~---------- 441 (581)
......+++.++...++.++.++ .|..+|.++++..+....
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 00112468888888888887766 499999999885443221
Q ss_pred -CceEEEEECCCCC---EEEEEeeCCcEEEEEecCCCceeEEEeccccc-ee--------EE------------Ee----
Q 008005 442 -EVITSFSLSKDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-RF--------VI------------RS---- 492 (581)
Q Consensus 442 -~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~--------~i------------~~---- 492 (581)
.++....+..+++ .+++++.+|.++++|..++ +++......... .. .+ ..
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 2223333334665 6888899999999999988 554332211100 00 00 00
Q ss_pred --------eecCCCCcEEEEE------------------------------------eCCCcEEEEeCCCCceEEEeccC
Q 008005 493 --------CFGGFEQAFIASG------------------------------------SEDSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 493 --------~~~~~~~~~l~sg------------------------------------s~dg~I~iwd~~~~~~~~~~~~h 528 (581)
..++|+..+++.. ..+|.|+.||..+|+.+-....+
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 1113333333321 13488999999999998776643
Q ss_pred CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 529 SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 529 ~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
. ......+...+ .+++.++.||.|+.||.++++...+..
T Consensus 458 ~-~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 458 T-HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp S-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred C-CCcCceeEeCC-CEEEEECCcccchhhhhhcChhheEec
Confidence 3 33333344455 588889999999999999999876543
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.89 E-value=1e-06 Score=81.84 Aligned_cols=203 Identities=11% Similarity=0.116 Sum_probs=133.9
Q ss_pred cceeecccccC--cEEEEEEcCCCCEEEEEeC--CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC
Q 008005 263 QTLQILEAHSD--EVWFLQFSHDGKYLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 263 ~~~~~l~~h~~--~V~~l~~s~~g~~lasgs~--dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
+.+.++. |.. ....++|++++.+.++.+. ++.|.++|..++...... .+..+. ....+++.. +...++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-~l~~~~-fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-KMDDSY-FGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-ECCTTC-CEEEEEEET-TEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-ecCCCc-ceEEEEEeC-CEEEEEEecC
Confidence 4455553 443 3679999998765555543 579999999987433221 122222 223455552 3344444567
Q ss_pred CcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-----cccEEEEEEeeC
Q 008005 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDD 412 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~i~~~~~ 412 (581)
+.+.++|..+.+.+..+... ... ...++|++.++++..++.|.++|..+.+........ ...++.+.+. +
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 89999999999999888654 222 335568888888888899999999886654433221 1136778887 6
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-eeEEecC--------------CceEEEEECCCCCEEEEEe-eCCcEEEEEecCC
Q 008005 413 GKRIISICREAAILLLDREANF-ERWIEEE--------------EVITSFSLSKDNKYLLVNL-INQEIHLWSIESD 473 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~--------------~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~ 473 (581)
+...+....++.|.+.|..+++ ...+... .....++++|+++.+++++ ..+.+...++...
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 7544444467899999999987 3333221 3568999999987666655 5778888887653
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=3.8e-07 Score=84.82 Aligned_cols=206 Identities=10% Similarity=0.051 Sum_probs=136.2
Q ss_pred cEEEEEecCC-CeEEEEEEecCCCeEEEEe-C--CCcEEEEeCCCCeEEeeccCcc-ccEEEEEEeeCCCEEEEEE-cCC
Q 008005 350 ECLHVYEKTG-VGLISCGWFLDGGGIFAGM-T--DKSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIISIC-REA 423 (581)
Q Consensus 350 ~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~-~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~dg 423 (581)
+.+.++.... .....+.|++++ .|+.++ . ++.|.++|+.+++......... .....+++. +..++.+. .++
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 3455554333 235789999886 555544 2 5799999999887765543221 123344444 55665554 578
Q ss_pred eEEEEECCCCe-eeEEecC-CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc--ceeEE-EeeecCCC
Q 008005 424 AILLLDREANF-ERWIEEE-EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFVI-RSCFGGFE 498 (581)
Q Consensus 424 ~i~i~d~~~~~-~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~ 498 (581)
.+.++|..+.. ...+... .. ...+++|++.++++..++.|.++|..+. +.+..+..... ..... ...+ . +
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~-~-d 161 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEY-I-N 161 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-E-T
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEE-E-C
Confidence 99999999877 3333333 22 2335567887887777889999999887 55555553321 11111 1222 3 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEeccC-------------CCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 499 QAFIASGSEDSQVYIWHRYTGELVLALAGH-------------SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+...+....++.|.+.|..+++.+..+... ....++|+|+|++..+++++...++|..-++....
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 655555556889999999999998887632 13568999999987788888888999999887654
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.86 E-value=9.6e-07 Score=85.97 Aligned_cols=238 Identities=10% Similarity=-0.026 Sum_probs=145.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC-----------------CCCCEEEEEeCC-CCCeEEE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG-----------------HRKPVFTVSWSP-NDHQLLT 334 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~-----------------h~~~V~~l~~sp-~~~~l~s 334 (581)
....+++|.++|+++.++..++.|..|+...+ .+........ ....+.++++.+ ++. |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 34557889999997888888999999987643 2222211000 013478999997 554 555
Q ss_pred eeCCCcEEEEEcCCCcEEEEEec----CCCeEEEEEEec-CCCeEEEEeC-----------------CCcEEEEeCCCCe
Q 008005 335 CGQEEAIRRWDVNSGECLHVYEK----TGVGLISCGWFL-DGGGIFAGMT-----------------DKSICLWDLDGRE 392 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~sg~~-----------------dg~i~vwd~~~~~ 392 (581)
+...+.|..+|..++........ .......+++.+ +|...++-.. ++.|..||..++.
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 54445588888776543221111 113467899999 8866555322 3678999987766
Q ss_pred EEeeccCccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCCCe----eeEEecCCceEEEEECCCCCEEEEEee------
Q 008005 393 LESWKGQKTLRISDMAITDDGKRIISI-CREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLI------ 461 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~------ 461 (581)
........ .....++++++++.++.+ +..+.|..|++.... ..+....+ ...++++++|++.++...
T Consensus 177 ~~~~~~~~-~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKEL-HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEE-SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCC-ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 54433221 246779999999977666 456899999987532 22222334 788999999987666554
Q ss_pred ----CCcEEEEEecCCCceeEEEeccccc-eeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 462 ----NQEIHLWSIESDPKLVSRYKGHKRA-RFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 462 ----d~~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.+.|..+|... +.+..+....+. ...+..+. ..++.+.++...++.|.++++.
T Consensus 255 ~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQ-EHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEE-EETTEEEEECSSCSEEEEEEC-
T ss_pred cCCCccEEEEECCCC--CEEEEEECCCCCccccceEEE-EeCCEEEEeecCCCceEEEecc
Confidence 35677777542 556666543221 00111111 1355566665667778888764
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=5e-06 Score=78.37 Aligned_cols=203 Identities=8% Similarity=-0.036 Sum_probs=132.1
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCc
Q 008005 273 DEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGE 350 (581)
Q Consensus 273 ~~V~~l~~s~~g~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~ 350 (581)
..+..++|++++..|. +-..++.|..++...... .............+++++++..|+.+ ...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC
Confidence 4577999999766555 444678899999875421 12222223467899999976555544 456789999987543
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeC---CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~ 426 (581)
..............+++.|++..++.+.. .+.|..+++++................+++++++..|+.+. ..+.|.
T Consensus 113 ~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 32223222246789999997777766654 36888899876544333222234688999999887776665 467999
Q ss_pred EEECCCCe-eeEEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEe
Q 008005 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~ 481 (581)
.+|..... ............++.. +..++++. ..+.|..+|..++ +.+..+.
T Consensus 193 ~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i~ 246 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFH 246 (267)
T ss_dssp EEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEEC
T ss_pred EEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEEc
Confidence 99998655 2333333445667664 45555554 4678999998876 5555554
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=3.2e-06 Score=88.83 Aligned_cols=289 Identities=11% Similarity=0.025 Sum_probs=166.1
Q ss_pred CCEEEEEeC-CCeEEEEEc-ccCCeeeEEEEecCCCC-----------CEEEEEeCCCCCe----EEEeeCCCcEEEEEc
Q 008005 284 GKYLASSSK-DQSAIIWEV-KEDGQVSLKHRLSGHRK-----------PVFTVSWSPNDHQ----LLTCGQEEAIRRWDV 346 (581)
Q Consensus 284 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~h~~-----------~V~~l~~sp~~~~----l~s~~~dg~i~vwd~ 346 (581)
+..+++++. ++.|.-+|. .++..+ ..+..... ....++++|.+.. ++.++.|+.+..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~l---W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTIL---WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEE---EEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 345666666 788888888 666432 22221110 0123455444444 888888999999999
Q ss_pred CCCcEEEEEecCCC----eEEE-EEEecCCCeEEEEe------CCCcEEEEeCCCCeEEeeccCcccc------------
Q 008005 347 NSGECLHVYEKTGV----GLIS-CGWFLDGGGIFAGM------TDKSICLWDLDGRELESWKGQKTLR------------ 403 (581)
Q Consensus 347 ~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~~~~------------ 403 (581)
.+|+.+........ .+.+ .... + ..+++++ .+|.|+.+|..+++..-........
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 99999877654321 1111 1111 3 4566665 3799999999877654221111000
Q ss_pred -------------------------E-EEEEEeeCCCEEEEEEcC----------------CeEEEEECCCCeeeEEecC
Q 008005 404 -------------------------I-SDMAITDDGKRIISICRE----------------AAILLLDREANFERWIEEE 441 (581)
Q Consensus 404 -------------------------i-~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~ 441 (581)
+ ..+++.++...++.++.+ +.|..+|.++++..+....
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 0 134666777788877665 3899999999885443221
Q ss_pred C-----------ceEEEEEC-CCC---CEEEEEeeCCcEEEEEecCCCceeEEEeccc-----------ccee-------
Q 008005 442 E-----------VITSFSLS-KDN---KYLLVNLINQEIHLWSIESDPKLVSRYKGHK-----------RARF------- 488 (581)
Q Consensus 442 ~-----------~i~~~~~s-p~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~------- 488 (581)
. ...-+... .+| ..++.++.+|.++++|..++ +++....... ....
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccccCCcccccccccCCCceeeccccC
Confidence 1 11112222 467 46777889999999999887 5544433111 0000
Q ss_pred -------EEE-----------eeecCCCCcEEEEE---------------------------------e------CCCcE
Q 008005 489 -------VIR-----------SCFGGFEQAFIASG---------------------------------S------EDSQV 511 (581)
Q Consensus 489 -------~i~-----------~~~~~~~~~~l~sg---------------------------------s------~dg~I 511 (581)
.+. ...++|+..++++. + .+|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 000 00112222222221 1 35789
Q ss_pred EEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC------CCceEEecCCC
Q 008005 512 YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ------SNGIVHHCNGR 580 (581)
Q Consensus 512 ~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~------~~~~~~~~~G~ 580 (581)
..||+.+++.+-+.... .++.+-.....+ .+++.++.||.|+.||.++++.+.+.. ..-+++..||+
T Consensus 456 ~A~D~~tG~~~W~~~~~-~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~ 528 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMER-FAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (599)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEEECCCCCEEeEecCC-CCccCcceEecC-CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCE
Confidence 99999999987766421 122211112234 477789999999999999999887654 23344555664
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=1.9e-06 Score=92.54 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=157.4
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC-CCCEEEEEeCC--CCCeEEEeeC------CCcEEEEEcCCCcEEEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSWSP--NDHQLLTCGQ------EEAIRRWDVNSGECLHV 354 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~sp--~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 354 (581)
+..++.++.|+.|..+|..++... ...... ......+..+| .+..++++.. +|.|..+|..+|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAI---WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEE---EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEe---eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 457788888999999999887533 222211 10000111112 1334555433 58999999999999888
Q ss_pred EecCC---C----------------------------eEEEEEEecCCCeEEEEeCCCc-------------------EE
Q 008005 355 YEKTG---V----------------------------GLISCGWFLDGGGIFAGMTDKS-------------------IC 384 (581)
Q Consensus 355 ~~~~~---~----------------------------~v~~~~~~~~~~~l~sg~~dg~-------------------i~ 384 (581)
+.... . ....+++.++...++.++.++. |.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75311 0 0123678888888988887763 99
Q ss_pred EEeCCCCeEEeeccC--cc-------ccEEEEEEeeCCC---EEEEEEcCCeEEEEECCCCeeeEEecC-----------
Q 008005 385 LWDLDGRELESWKGQ--KT-------LRISDMAITDDGK---RIISICREAAILLLDREANFERWIEEE----------- 441 (581)
Q Consensus 385 vwd~~~~~~~~~~~~--~~-------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~----------- 441 (581)
.+|.++++..-.... +. .+.....+..+|+ .++.++.+|.++++|..+++.......
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999988776433321 11 2233333445675 688889999999999998873311100
Q ss_pred ---Cc------------------------eEEEEECCCCCEEEEEe----------------------------------
Q 008005 442 ---EV------------------------ITSFSLSKDNKYLLVNL---------------------------------- 460 (581)
Q Consensus 442 ---~~------------------------i~~~~~sp~~~~l~~~~---------------------------------- 460 (581)
.+ -..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 01267788777766532
Q ss_pred --eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCE-EEEEE
Q 008005 461 --INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSV-NCVSW 537 (581)
Q Consensus 461 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v-~~l~~ 537 (581)
.+|.|..||+.++ +.+-......... .... ...+.+++.++.||.++.||..+|+.+..+....+.. .-+.+
T Consensus 434 ~~~~g~l~A~D~~tG-~~~W~~~~~~~~~-~~~~---~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~ 508 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ-KAAWKVPYPTHWN-GGTL---STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF 508 (668)
T ss_dssp GGCEEEEEEEETTTT-EEEEEEEESSSCC-CCEE---EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCccceEEEEeCCCC-cEEEEccCCCCCc-Ccee---EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence 1377999999887 5554444322211 0011 2356788889999999999999999998887553221 22344
Q ss_pred cCCCCcEEEEEE
Q 008005 538 NPANLHMLASAS 549 (581)
Q Consensus 538 ~p~~~~~l~s~s 549 (581)
..+|..+++.++
T Consensus 509 ~~~G~~yva~~~ 520 (668)
T 1kv9_A 509 ELAGRQYVAIMA 520 (668)
T ss_dssp EETTEEEEEEEE
T ss_pred EECCEEEEEEEe
Confidence 456633555554
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.76 E-value=2.1e-05 Score=75.70 Aligned_cols=237 Identities=10% Similarity=0.043 Sum_probs=138.5
Q ss_pred ccceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--
Q 008005 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-- 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg-- 339 (581)
.+.+..+... .....++|+++|+++++-..++.|..||.... ...... .......+++.++++++++.....
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe---CCCCceeEEEcCCCcEEEEeccCCcc
Confidence 3344445432 56778999999997777667899999987632 222222 234688999999998666554332
Q ss_pred cEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEee--c--------cCccccEEEEE
Q 008005 340 AIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW--K--------GQKTLRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~--------~~~~~~i~~i~ 408 (581)
.|..+|..+++........ ......++..+++..+++-..++.|+.+|..++....+ . .......+.+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 4667777788764433321 22234444444443344444588999999876432111 0 0111234555
Q ss_pred EeeCCCEEEEEE-cCCeEEEEECCC-Ce---eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 409 ITDDGKRIISIC-REAAILLLDREA-NF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 409 ~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
+++++.++.+. ..+.|..|+... +. ............++++++|+++++....+.|.++|... +........
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G--~~~~~~~~~ 251 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR--STTIIAQAE 251 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC--CEEEEECGG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC--CEEEEeecc
Confidence 88887776655 567999999874 22 22222234567899999998777766678999998753 332211111
Q ss_pred ccceeEEEeeecC--CCCcEEEEEeCC
Q 008005 484 KRARFVIRSCFGG--FEQAFIASGSED 508 (581)
Q Consensus 484 ~~~~~~i~~~~~~--~~~~~l~sgs~d 508 (581)
........+++.. +++..|+..+..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccCCceEEEEecccCCCCEEEEECCC
Confidence 1111223344433 676666555543
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=3.5e-06 Score=88.55 Aligned_cols=276 Identities=12% Similarity=-0.013 Sum_probs=161.5
Q ss_pred CCEEEEEeC-CCeEEEEEc-ccCCeeeEEEEecCCCC----------CE-EEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 284 GKYLASSSK-DQSAIIWEV-KEDGQVSLKHRLSGHRK----------PV-FTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 284 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~~~~h~~----------~V-~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
+..++.++. ++.|.-+|. .++..+ ........ .+ ..++. ++..+++++.|+.+..+|..+|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIV---WQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEE---EEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 345556666 788888888 666432 22211110 00 11222 35678888889999999999999
Q ss_pred EEEEEecCCC----eEEE-EEEecCCCeEEEEeC------CCcEEEEeCCCCeEEeeccCcccc----------------
Q 008005 351 CLHVYEKTGV----GLIS-CGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQKTLR---------------- 403 (581)
Q Consensus 351 ~~~~~~~~~~----~v~~-~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~---------------- 403 (581)
.+..+..... .+.+ ... .+..+++++. ++.|..+|..+++..-........
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 9887654321 1211 111 2346666665 789999999876654221111000
Q ss_pred ----------------------EEEEEEeeCCCEEEEEEcC----------------CeEEEEECCCCeeeEEecC----
Q 008005 404 ----------------------ISDMAITDDGKRIISICRE----------------AAILLLDREANFERWIEEE---- 441 (581)
Q Consensus 404 ----------------------i~~i~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~---- 441 (581)
...+++.++...++.++.+ +.|..+|.++++..+....
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 0235666766677766532 3699999999884443211
Q ss_pred -------CceEEEEECCCCC---EEEEEeeCCcEEEEEecCCCceeEEEecccc-------------ce-----------
Q 008005 442 -------EVITSFSLSKDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKR-------------AR----------- 487 (581)
Q Consensus 442 -------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~----------- 487 (581)
....-+...++|+ .+++++.+|.++++|..++ +.+..+..... ++
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1111122234674 5677888999999999887 55544432210 00
Q ss_pred -eEEE-----------eeecCCCCcEEEEEe-------------------------------------CCCcEEEEeCCC
Q 008005 488 -FVIR-----------SCFGGFEQAFIASGS-------------------------------------EDSQVYIWHRYT 518 (581)
Q Consensus 488 -~~i~-----------~~~~~~~~~~l~sgs-------------------------------------~dg~I~iwd~~~ 518 (581)
..+. ...++|+..+++..+ .+|.|+.||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 0000 011244445555443 357899999999
Q ss_pred CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC
Q 008005 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 519 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
++.+-++... ..+.+......+ .+++.++.||.|+.||.++++...+..
T Consensus 454 G~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 454 GKAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 9988776532 222222223334 367778999999999999999886544
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=9.6e-06 Score=85.36 Aligned_cols=288 Identities=10% Similarity=0.050 Sum_probs=163.8
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCC---------EEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP---------VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
..++.++.++.|.-+|..++..+ ..+...... ...+++ .+..++.++.|+.|..+|..+|+.+..+
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRL---WTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEE---EEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEE---EEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 34555555444888888776432 222211110 011122 3557888888999999999999998877
Q ss_pred ecCCC----eEE-EEEEecC---CC-eEEEEeC------CCcEEEEeCCCCeEEeeccCccc------------------
Q 008005 356 EKTGV----GLI-SCGWFLD---GG-GIFAGMT------DKSICLWDLDGRELESWKGQKTL------------------ 402 (581)
Q Consensus 356 ~~~~~----~v~-~~~~~~~---~~-~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~------------------ 402 (581)
..... .+. ......+ ++ .+++++. ++.|..+|..+++..-.......
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 64321 111 1111111 22 5666553 78999999987665322111100
Q ss_pred -----------------------cEEEEEEeeCCCEEEEEEc--------------------C----CeEEEEECCCCee
Q 008005 403 -----------------------RISDMAITDDGKRIISICR--------------------E----AAILLLDREANFE 435 (581)
Q Consensus 403 -----------------------~i~~i~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~ 435 (581)
.-..+++.++...++.++. | +.|..+|.++++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 0023566677777777663 2 5899999999885
Q ss_pred eEEec----C-------CceEEEEEC-CCCC---EEEEEeeCCcEEEEEecCCCceeEEEeccccc--------------
Q 008005 436 RWIEE----E-------EVITSFSLS-KDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-------------- 486 (581)
Q Consensus 436 ~~~~~----~-------~~i~~~~~s-p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------- 486 (581)
.+... . ....-+... .+|+ .+++++.+|.++++|..++ +++..+......
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecccccccCccccccccccCCCEe
Confidence 44421 1 011112222 4664 7788889999999999887 555444322100
Q ss_pred ----------------eeEEEee------------ecCCCCcEEEEEe--------------------------------
Q 008005 487 ----------------RFVIRSC------------FGGFEQAFIASGS-------------------------------- 506 (581)
Q Consensus 487 ----------------~~~i~~~------------~~~~~~~~l~sgs-------------------------------- 506 (581)
......+ .++|+..++++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0000000 1123333333322
Q ss_pred -CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccccccC------CCceEEecCC
Q 008005 507 -EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ------SNGIVHHCNG 579 (581)
Q Consensus 507 -~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~------~~~~~~~~~G 579 (581)
.+|.|+.||+.+|+.+-+...+. ++..-.....+ .+++.++.||.++.||.++++...+.. ..-+++..||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G 540 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCcceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECC
Confidence 36789999999999887665332 22211111234 478889999999999999999887654 2234455666
Q ss_pred C
Q 008005 580 R 580 (581)
Q Consensus 580 ~ 580 (581)
+
T Consensus 541 ~ 541 (582)
T 1flg_A 541 E 541 (582)
T ss_dssp E
T ss_pred E
Confidence 5
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.2e-05 Score=86.31 Aligned_cols=280 Identities=9% Similarity=0.061 Sum_probs=172.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEE-------ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE
Q 008005 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-------LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~-------~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....|.++...++|. |..|+.++-|..|+.... .+..... .......|.++...+++. |..|+.++-|..
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 356799999999887 445665666888887643 2211110 011235699999888775 445565666888
Q ss_pred EEcCCCcEEEEE---ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc--CccccEEEEEEeeCCCEEEE
Q 008005 344 WDVNSGECLHVY---EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG--QKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 344 wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~ 418 (581)
||..++...... ......|.++...+++ .|..|+.++.|..+|..++....... .....|.++...+++. +..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwi 465 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWI 465 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEE
Confidence 997655432211 1234568888877665 46667777789999998777665542 2335788888888775 555
Q ss_pred EEcCCeEEEEECCCCeeeEEe-c------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc-ceeEE
Q 008005 419 ICREAAILLLDREANFERWIE-E------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR-ARFVI 490 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~~~~~~-~------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~i 490 (581)
++. +-|..||..++...... . ...|.++...++|.+.+ ++.++.+..||..+. ....+..... ....+
T Consensus 466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i 541 (781)
T 3v9f_A 466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTI 541 (781)
T ss_dssp EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC--EEEEECTTTTCSCSCE
T ss_pred EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC--eEEEccCCCCCCCCee
Confidence 555 66889998876632222 1 35689999998887554 555455777887653 3334432111 11223
Q ss_pred EeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc----CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG----HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
...+..++|.+.+ |+.+|.|..||..+++.. .+.. ....|.++...++| .+.++ +.+| |..++..+.+.
T Consensus 542 ~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g-~lW~~-t~~G-l~~~~~~~~~~ 614 (781)
T 3v9f_A 542 NQIYRSSKGQMWL-ATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNG-NIWAS-TNTG-ISCYITSKKCF 614 (781)
T ss_dssp EEEEECTTSCEEE-EETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSS-CEEEE-CSSC-EEEEETTTTEE
T ss_pred EEEEECCCCCEEE-EECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCC-CEEEE-cCCc-eEEEECCCCce
Confidence 3444456666544 455676589998776543 2221 13468899998888 45444 4444 66677665543
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=2.6e-06 Score=78.18 Aligned_cols=192 Identities=11% Similarity=0.046 Sum_probs=122.2
Q ss_pred EEEEEecC-CCeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEE
Q 008005 351 CLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (581)
Q Consensus 351 ~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~ 426 (581)
.+.++... ..-...+.|+ ++..+.+.+.+| .|+.+|+.++++........ ......+.++++.+.... .++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEE
Confidence 45555333 2334678887 665566666665 89999999887765554332 333333444566666655 588999
Q ss_pred EEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc--ceeEEEeeecCCCCcEEE
Q 008005 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~ 503 (581)
+||..+.. ...+.....-..++ ++++.|+++..++.|.++|..+. +.+..+..... ....+.-..+. +|.+.+
T Consensus 111 v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 99999877 33344333323333 57777777766788999999887 66666554321 11111111112 566665
Q ss_pred EEeCCCcEEEEeCCCCceEEEeccC------------CCCEEEEEEcCCCCcEEEEE
Q 008005 504 SGSEDSQVYIWHRYTGELVLALAGH------------SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~~~~h------------~~~v~~l~~~p~~~~~l~s~ 548 (581)
..-.++.|.+.|..+|+.+..+... ....++|+|+|++..+++||
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5556889999999999998877532 23569999999985555554
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=5.7e-05 Score=83.03 Aligned_cols=280 Identities=9% Similarity=0.080 Sum_probs=170.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe-----cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-----SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
...|.++...++|.+.+. +.+ -+.+||..++ .+...... ......|.++...++|. |..|+..+-|.++|.
T Consensus 210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CCceeEEEEcCCCCEEEE-eCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 357999999888876554 444 5888987643 22211111 11245699999888776 444555456888998
Q ss_pred CCCcEEEEEe--------------cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc---------Ccccc
Q 008005 347 NSGECLHVYE--------------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG---------QKTLR 403 (581)
Q Consensus 347 ~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---------~~~~~ 403 (581)
.++....... .....|.++...+++ .|..|+.++-|..++........+.. .....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 7765432221 124568888877766 57778878889999987655444321 12346
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE-----ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANFERWI-----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
|.++...++|. |..|+.++-|..||..+...... .....|.++...+++.+. +|+.++.+..+|..++ ...
T Consensus 365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~--~~~ 440 (781)
T 3v9f_A 365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLK--KFQ 440 (781)
T ss_dssp EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSC--EEE
T ss_pred eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCC--cEE
Confidence 88998888775 55667667788999876542221 123568899888877644 4666677888887664 233
Q ss_pred EEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-----CCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-----SGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
.+.........+.+....+++. |..|+. +-|..||..+++........ ...|.++...++| .+ ..|+.++-
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~l-Wigt~~~G 516 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RF-WIGTFGGG 516 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CE-EEEESSSC
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CE-EEEEcCCC
Confidence 3321111111233444355555 444555 55899998876654332222 4679999999888 44 44555445
Q ss_pred EEEecCCcccc
Q 008005 554 IRIWGLDQINM 564 (581)
Q Consensus 554 I~iW~~~~~~~ 564 (581)
|..|+..+.+.
T Consensus 517 l~~~~~~~~~~ 527 (781)
T 3v9f_A 517 VGIYTPDMQLV 527 (781)
T ss_dssp EEEECTTCCEE
T ss_pred EEEEeCCCCeE
Confidence 77788776544
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.71 E-value=5.7e-07 Score=96.73 Aligned_cols=270 Identities=13% Similarity=0.008 Sum_probs=152.7
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEcccCCeeeEEEEe-cCCCCCEEEEEeCCCCCeEEEeeC-CCcEE
Q 008005 277 FLQFSH-DGKYLASSSKDQ-----------SAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQ-EEAIR 342 (581)
Q Consensus 277 ~l~~s~-~g~~lasgs~dg-----------~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~ 342 (581)
++++.+ ++++++.|+.+. .+.+||..++. +.....+ ..+.....++++..+++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 456667 888888887543 58899987653 3333333 223334456778889999999985 45899
Q ss_pred EEEcCCCcEEEEEecCC-CeEEEEEEecCCCeEEEEe-CC-----CcEEEEeCCCCeEEeeccCccccE----EEEEEee
Q 008005 343 RWDVNSGECLHVYEKTG-VGLISCGWFLDGGGIFAGM-TD-----KSICLWDLDGRELESWKGQKTLRI----SDMAITD 411 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~-~d-----g~i~vwd~~~~~~~~~~~~~~~~i----~~i~~~~ 411 (581)
+||..+.+....-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+............+. ....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998876543322221 1123455567899989888 44 469999998877655421100000 0011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeee-EEec----------CCceEEEEECC-CCCEEEEEeeCC-------
Q 008005 412 DGKRIISICRE---------AAILLLDREANFER-WIEE----------EEVITSFSLSK-DNKYLLVNLINQ------- 463 (581)
Q Consensus 412 ~~~~l~~~~~d---------g~i~i~d~~~~~~~-~~~~----------~~~i~~~~~sp-~~~~l~~~~~d~------- 463 (581)
++..++.++.+ ..+..||..+.... .... .....++.+.. +++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 44445555444 45678888776511 1111 11223444433 677788877532
Q ss_pred ----cEEEEEecCCCceeEEE-eccccceeEEEeeecCCCCcEEEEEeCC-----------CcEEEEeCCCCceEEE--e
Q 008005 464 ----EIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSED-----------SQVYIWHRYTGELVLA--L 525 (581)
Q Consensus 464 ----~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~--~ 525 (581)
.|.+||..+. .-.... ...........++ ..+++++++.|+.+ ..+.+||..+.+-... +
T Consensus 429 ~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~~~~~-~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~ 506 (656)
T 1k3i_A 429 TNAHIITLGEPGTS-PNTVFASNGLYFARTFHTSV-VLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506 (656)
T ss_dssp CCEEEEECCSTTSC-CEEEECTTCCSSCCBSCEEE-ECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CcceEEEcCCCCCC-CeeEEccCCCCCCcccCCeE-ECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence 5777777664 222111 0111111111122 25688999998864 4689999877654321 1
Q ss_pred ccCCCCEEEEEEcCCCCcEEEEEEC
Q 008005 526 AGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
........+..+.|++ ++++.||.
T Consensus 507 ~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 507 SIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp SSCCCTTEEEEECTTS-CEEEEECC
T ss_pred CCccccccHhhcCCCc-EEEecCCC
Confidence 1112222345567888 78888885
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.71 E-value=5.3e-05 Score=72.89 Aligned_cols=231 Identities=8% Similarity=-0.001 Sum_probs=138.1
Q ss_pred EEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C-cEEEE
Q 008005 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K-SICLW 386 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g-~i~vw 386 (581)
....+... .....++|+++++++++-..++.|..||.... ....+. .......+++.++++.+++.... + .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 33444332 45778999999987777667889999997653 333333 34578899999999865554332 2 47777
Q ss_pred eCCCCeEEeeccC-ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEE------------ecCCceEEEEECCCC
Q 008005 387 DLDGRELESWKGQ-KTLRISDMAITDDGKRIISICREAAILLLDREANFERWI------------EEEEVITSFSLSKDN 453 (581)
Q Consensus 387 d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~i~~~~~sp~~ 453 (581)
|..++.+...... .......++..+++..+++-..++.|+.+|..++..... ..-.....+ +|++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 8776665443321 112344555555554444444588999999876431111 011234455 7888
Q ss_pred CEEEEEe-eCCcEEEEEecCCCce--eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEE--EeccC
Q 008005 454 KYLLVNL-INQEIHLWSIESDPKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL--ALAGH 528 (581)
Q Consensus 454 ~~l~~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~h 528 (581)
++|+++. ..+.|..|++...... ...+.....+ .-....++|++.++....+.|.++|.. ++... .+...
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P----~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI----DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC----SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC----CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 7776655 4678999998752111 1122111111 111226788887777778899999965 66532 34333
Q ss_pred CCCEEEEEEc---CCCCcEEEEEE
Q 008005 529 SGSVNCVSWN---PANLHMLASAS 549 (581)
Q Consensus 529 ~~~v~~l~~~---p~~~~~l~s~s 549 (581)
....++++|. |++..++++.+
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 4568999998 88744555443
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=4e-06 Score=76.96 Aligned_cols=189 Identities=11% Similarity=0.117 Sum_probs=124.5
Q ss_pred ccceeecccccCc--EEEEEEcCCCCEEEEEeCCC--eEEEEEcccCCeeeEEEEecCCCCC-EEEEEeCCCCCeEEEe-
Q 008005 262 SQTLQILEAHSDE--VWFLQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSPNDHQLLTC- 335 (581)
Q Consensus 262 ~~~~~~l~~h~~~--V~~l~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~- 335 (581)
.+.++++ .|... ...+.|+ ++.+..+++.+| .|+++|+.++... ..+.-.... --.+++. +..|...
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l~~~~FgeGit~~--g~~ly~lt 103 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---QQIELGKRYFGEGISDW--KDKIVGLT 103 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---EEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---EEEecCCccceeEEEEe--CCEEEEEE
Confidence 3445555 35443 4788998 677777777766 8999999987433 333222221 1234443 4444444
Q ss_pred eCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccC-----ccccEEEEEEe
Q 008005 336 GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ-----KTLRISDMAIT 410 (581)
Q Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~i~~~ 410 (581)
..++.+.+||..+.+.+.++...... ..+ .+|++.|+.+..++.|.++|..+.+....... .-..++.+.+.
T Consensus 104 w~~~~v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 104 WKNGLGFVWNIRNLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred eeCCEEEEEECccCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 45889999999999999998765422 233 35788888877788899999987655443222 11245567776
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe-eeEEec-------------CCceEEEEECCCCCEEEEEee
Q 008005 411 DDGKRIISICREAAILLLDREANF-ERWIEE-------------EEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+|...+..-.++.|.+.|..++. ...+.. ....+.++++|+++.|++.+.
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 67655555568899999999988 333322 235689999999988888774
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=5.3e-06 Score=87.21 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=153.4
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCC--CCCeEEEeeC------CCcEEEEEcCCCcEEEEE
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQ------EEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~------dg~i~vwd~~~~~~~~~~ 355 (581)
+..++.++.|+.+..+|..++...- ......+... ..+.-+| .+..+++++. ++.|..+|..+|+.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W-~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINW-EVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEE-EEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE-EecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5567788889999999998775321 1122221100 0011112 1334555544 789999999999998877
Q ss_pred ecCCCe--------------------------------------EEEEEEecCCCeEEEEeCC----------------C
Q 008005 356 EKTGVG--------------------------------------LISCGWFLDGGGIFAGMTD----------------K 381 (581)
Q Consensus 356 ~~~~~~--------------------------------------v~~~~~~~~~~~l~sg~~d----------------g 381 (581)
...... ...+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 643211 0124566766777776642 3
Q ss_pred cEEEEeCCCCeEEeeccC--cc-------ccEEEEEEeeCCC---EEEEEEcCCeEEEEECCCCeeeEEec-C-------
Q 008005 382 SICLWDLDGRELESWKGQ--KT-------LRISDMAITDDGK---RIISICREAAILLLDREANFERWIEE-E------- 441 (581)
Q Consensus 382 ~i~vwd~~~~~~~~~~~~--~~-------~~i~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~-~------- 441 (581)
.|..+|.++++..-.... +. ....-+....+|+ .++.++.+|.++++|..+++...... .
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 599999988776432221 10 0111123335774 56778899999999999887332211 1
Q ss_pred -------Cce--------------------------EEEEECCCCCEEEEEee---------------------------
Q 008005 442 -------EVI--------------------------TSFSLSKDNKYLLVNLI--------------------------- 461 (581)
Q Consensus 442 -------~~i--------------------------~~~~~sp~~~~l~~~~~--------------------------- 461 (581)
.++ ..++++|+...+++...
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 24578888888877653
Q ss_pred ----------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCC
Q 008005 462 ----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS 531 (581)
Q Consensus 462 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 531 (581)
++.|..||..++ +.+-++...... .. ......+..++.++.||.|+.||..+|+.+..+......
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~-~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAA-WG---GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC-CEEEEEEESSCC-CS---BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cCccccCCCCCCeEEEEECCCC-CEEEEecCCCCc-cc---eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 367888888887 444444322111 00 000123567777999999999999999999888744321
Q ss_pred -EEEEEEcCCCCcEEEEEECC
Q 008005 532 -VNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 532 -v~~l~~~p~~~~~l~s~s~D 551 (581)
-.-+.+..+|..++++.+..
T Consensus 508 ~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp CSCCEEEEETTEEEEEEEECC
T ss_pred EeeeEEEEECCEEEEEEECCC
Confidence 12234556773344444433
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=8.8e-06 Score=85.55 Aligned_cols=265 Identities=13% Similarity=0.064 Sum_probs=154.3
Q ss_pred EEEcCCCCE----EEEEeCCCeEEEEEcccCCeeeEEEEecCCC--CCEEE-EEeCCCCCeEEEee------CCCcEEEE
Q 008005 278 LQFSHDGKY----LASSSKDQSAIIWEVKEDGQVSLKHRLSGHR--KPVFT-VSWSPNDHQLLTCG------QEEAIRRW 344 (581)
Q Consensus 278 l~~s~~g~~----lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V~~-l~~sp~~~~l~s~~------~dg~i~vw 344 (581)
++++|.+.. |+.++.|+.+.-+|..++...-. .....+. ..+.+ .... ++ .+++++ .+|.|+.+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~-~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK-VENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE-EECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEe-ecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEE
Confidence 344444444 77888899999999987753211 1121110 01111 0111 44 455544 37999999
Q ss_pred EcCCCcEEEEEecCCCe-------------------------------------E-EEEEEecCCCeEEEEeCC------
Q 008005 345 DVNSGECLHVYEKTGVG-------------------------------------L-ISCGWFLDGGGIFAGMTD------ 380 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~sg~~d------ 380 (581)
|..+|+.+..+...... + ..+++.++...++.+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999998877643211 0 134566777788887765
Q ss_pred ----------CcEEEEeCCCCeEEeeccCccc---------cEEEEEEe-eCC---CEEEEEEcCCeEEEEECCCCeeeE
Q 008005 381 ----------KSICLWDLDGRELESWKGQKTL---------RISDMAIT-DDG---KRIISICREAAILLLDREANFERW 437 (581)
Q Consensus 381 ----------g~i~vwd~~~~~~~~~~~~~~~---------~i~~i~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 437 (581)
+.|..+|.++++..-....... ...-+... .+| ..++.++.+|.++++|.++++...
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3799999988776432221110 11112222 467 467778899999999999887333
Q ss_pred EecC---------------Cce--------------------------EEEEECCCCCEEEEEe----------------
Q 008005 438 IEEE---------------EVI--------------------------TSFSLSKDNKYLLVNL---------------- 460 (581)
Q Consensus 438 ~~~~---------------~~i--------------------------~~~~~sp~~~~l~~~~---------------- 460 (581)
.... .++ ..++++|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 2111 011 2456777777766643
Q ss_pred -----------------------eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 461 -----------------------INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 461 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..|.+..||+.++ +.+-........ . .......+.+++.++.||.++.||.+
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~-~---~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKMERFAV-W---GGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEESSCC-C---SBCEEETTTEEEEECTTSEEEEEETT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecCCCCc-c---CcceEecCCEEEEECCCCeEEEEECC
Confidence 2356777777776 444333211100 0 00001245677889999999999999
Q ss_pred CCceEEEeccCCCCE-EEEEEcCCCCcEEEEEEC
Q 008005 518 TGELVLALAGHSGSV-NCVSWNPANLHMLASASD 550 (581)
Q Consensus 518 ~~~~~~~~~~h~~~v-~~l~~~p~~~~~l~s~s~ 550 (581)
+|+.+.+++...+.+ .-+.|..+|..++++.+.
T Consensus 503 tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 503 TGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp TCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 999998876543222 224556677445555443
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=7.1e-05 Score=73.42 Aligned_cols=253 Identities=9% Similarity=-0.021 Sum_probs=153.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcE
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGEC 351 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~ 351 (581)
+..+|.+..+++ +|+.+. ...|+..++... .. ...... ...+..++|++.+..|+.+ ...+.|..+++..+..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~-~~--~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRS-EY--TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSC-CE--EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCC-ee--EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 444566666644 444443 345777777643 22 222233 3447899999866555544 4567899999887654
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cC-CeEEEE
Q 008005 352 LHVYEKTGVGLISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-RE-AAILLL 428 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-g~i~i~ 428 (581)
...+.........+++.+.+..|+.+ ...+.|.+.++++................+++.|.+..++... .. +.|..+
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 44443333455678888766555544 4567899999987654444433334689999999766665554 34 789999
Q ss_pred ECCCCeeeEE--ecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEE
Q 008005 429 DREANFERWI--EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 429 d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
+........+ ........++++|++..|+.+. ..+.|..+|+... .....+.........+.. ..+.++++-
T Consensus 188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav----~~~~ly~td 262 (349)
T 3v64_C 188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV----FEDSLYWTD 262 (349)
T ss_dssp ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE----ETTEEEEEE
T ss_pred eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE----ECCEEEEec
Confidence 9876553322 2344578999998777766664 4568999998764 222222222222223332 245566666
Q ss_pred eCCCcEEEEeCCCCceEEEeccCCCCEEEEE
Q 008005 506 SEDSQVYIWHRYTGELVLALAGHSGSVNCVS 536 (581)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~ 536 (581)
...+.|..++..+|+....+........+++
T Consensus 263 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp TTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 6777888888667766655543333334443
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=7.5e-06 Score=75.12 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=122.4
Q ss_pred cEEEEEecCC-CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE-EcCCeEEE
Q 008005 350 ECLHVYEKTG-VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI-CREAAILL 427 (581)
Q Consensus 350 ~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i 427 (581)
+.+.++.... .....+.|. ++..+.+.+.+|.|+++|+.++++.... ... ......+.++++.|+.. -.++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEE
Confidence 3445553322 334677776 4556667777889999999887765544 222 33332233445555444 46889999
Q ss_pred EECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc--eeEEEeeecCCCCcEEEE
Q 008005 428 LDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 428 ~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s 504 (581)
||..+.+ ...+.....-..++ +|++.|+++..++.|.++|..+. +.+..+...... ...+.-..+. +|.+.+.
T Consensus 121 ~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence 9999887 33344333333444 57888888877899999999887 666665543321 1111111112 6665555
Q ss_pred EeCCCcEEEEeCCCCceEEEeccC-------------CCCEEEEEEcCCCCcEEEEE
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGH-------------SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~~l~s~ 548 (581)
.-.+..|.+.|..+|+.+..+... ....++|+|+|++.++++||
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 556889999999999998877532 24679999999886666665
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=6.6e-06 Score=89.78 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=134.1
Q ss_pred CEEEEEeC-CCCCeEEEeeC-CC----cEEEEEcCCC-cEEE-EEecCCCeEEEEEEecCCCeEEEEeCC-----CcEEE
Q 008005 319 PVFTVSWS-PNDHQLLTCGQ-EE----AIRRWDVNSG-ECLH-VYEKTGVGLISCGWFLDGGGIFAGMTD-----KSICL 385 (581)
Q Consensus 319 ~V~~l~~s-p~~~~l~s~~~-dg----~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~v 385 (581)
.+...+|| |||++||.+.. +| +|+++|+.++ +.+. .+. .....+.|+||++.|+....+ ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998885533 22 5999999998 6321 111 123467899999988877765 36888
Q ss_pred EeCCCCe---EEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCe--e--eEE-e-cCCceEEEEECCCC
Q 008005 386 WDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANF--E--RWI-E-EEEVITSFSLSKDN 453 (581)
Q Consensus 386 wd~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~--~--~~~-~-~~~~i~~~~~sp~~ 453 (581)
+++.+.. ...+..........+.|+|||++|+..+. ...|+++|+.++. . ..+ . ......++.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 8987643 12222222224667899999999887763 3468889988752 2 222 1 223344555443 5
Q ss_pred CEEEEEee-C--C--cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc--EEEEeC-------CCC
Q 008005 454 KYLLVNLI-N--Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ--VYIWHR-------YTG 519 (581)
Q Consensus 454 ~~l~~~~~-d--~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~--I~iwd~-------~~~ 519 (581)
..|+..+. + + .|..+|+.+.......+..+......-...+ . .+.++++...+|. |+++++ .++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~-~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV-R-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE-C-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE-E-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 55554443 3 2 5666666532121220222322222122222 2 4556777777884 556665 344
Q ss_pred ceEEEeccC-CCCEEEEEE----cCCCCcEEEEEECC---CcEEEecCCccc
Q 008005 520 ELVLALAGH-SGSVNCVSW----NPANLHMLASASDD---RTIRIWGLDQIN 563 (581)
Q Consensus 520 ~~~~~~~~h-~~~v~~l~~----~p~~~~~l~s~s~D---g~I~iW~~~~~~ 563 (581)
+....+... ...+..+.+ ++++..++++.+.. +.+..+|+.+++
T Consensus 409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 413333211 123445544 34664566666544 357777776554
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=9.7e-05 Score=77.66 Aligned_cols=259 Identities=15% Similarity=0.127 Sum_probs=152.5
Q ss_pred CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCC-------CCCEEEEEeC-CCCC-eEEEee------CCCcEEEEEcCC
Q 008005 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWS-PNDH-QLLTCG------QEEAIRRWDVNS 348 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~s-p~~~-~l~s~~------~dg~i~vwd~~~ 348 (581)
+..++.++.|+.+.-+|..++...-. .....+ ..++ +.=. .+++ .+++++ .++.|..+|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~-~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWK-KKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEE-EECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEee-ecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 45677788899999999987753211 112211 1111 1100 1233 555554 378999999999
Q ss_pred CcEEEEEecCCCeE-----------------------------------------EEEEEecCCCeEEEEeC--------
Q 008005 349 GECLHVYEKTGVGL-----------------------------------------ISCGWFLDGGGIFAGMT-------- 379 (581)
Q Consensus 349 ~~~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~sg~~-------- 379 (581)
|+.+.........+ ..+++.|+...++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 99887654321100 12456667778877663
Q ss_pred ------------C----CcEEEEeCCCCeEEeeccC--cc-------ccEEEEEEe-eCCC---EEEEEEcCCeEEEEEC
Q 008005 380 ------------D----KSICLWDLDGRELESWKGQ--KT-------LRISDMAIT-DDGK---RIISICREAAILLLDR 430 (581)
Q Consensus 380 ------------d----g~i~vwd~~~~~~~~~~~~--~~-------~~i~~i~~~-~~~~---~l~~~~~dg~i~i~d~ 430 (581)
| +.|..+|.++++..-.... +. ....-+... .+|+ .++.++.+|.++++|.
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 5899999988776533221 11 011111221 4674 6788899999999999
Q ss_pred CCCeeeEEecCCc-----------------------------------------------eEEEEECCCCCEEEEEee--
Q 008005 431 EANFERWIEEEEV-----------------------------------------------ITSFSLSKDNKYLLVNLI-- 461 (581)
Q Consensus 431 ~~~~~~~~~~~~~-----------------------------------------------i~~~~~sp~~~~l~~~~~-- 461 (581)
.+++......... -..++++|+...+++...
T Consensus 354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~ 433 (582)
T 1flg_A 354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW 433 (582)
T ss_dssp TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence 9887332211100 013466776666665442
Q ss_pred -------------------------------CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc
Q 008005 462 -------------------------------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 462 -------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
+|.|..||+.++ +.+-+....... ..-.. ...+.+++.|+.||.
T Consensus 434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~-~~g~~---~tagglvf~g~~dg~ 508 (582)
T 1flg_A 434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPL-WAGVL---ATAGNLVFTGTGDGY 508 (582)
T ss_dssp EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCC-CSCCE---EETTTEEEEECTTSE
T ss_pred ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCC-cccce---EeCCCEEEEECCCCc
Confidence 467888898887 444444322111 00000 123567888999999
Q ss_pred EEEEeCCCCceEEEeccCCCCE-EEEEEcCCCCcEEEEEEC
Q 008005 511 VYIWHRYTGELVLALAGHSGSV-NCVSWNPANLHMLASASD 550 (581)
Q Consensus 511 I~iwd~~~~~~~~~~~~h~~~v-~~l~~~p~~~~~l~s~s~ 550 (581)
++.||.++|+.+.+++...+.+ .-+.|..+|..++++.+.
T Consensus 509 l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 509 FKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 9999999999998887644322 225666777445555443
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.55 E-value=0.00026 Score=68.32 Aligned_cols=232 Identities=9% Similarity=-0.028 Sum_probs=142.0
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCC----CcEEEEEecCCC
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNS----GECLHVYEKTGV 360 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~----~~~~~~~~~~~~ 360 (581)
+|+.+.. ..|+..++...... ..+. ....+.+++|++.+..|+.+ ...+.|..+++.. ......+...-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~---~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT---SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE---EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCcceE---ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 3444433 45888888754322 2222 34457899999866555544 4568899999876 222222322223
Q ss_pred eEEEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC--CeEEEEECCCCeeeE
Q 008005 361 GLISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--AAILLLDREANFERW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~ 437 (581)
....+++.+.+..|+.+ ...+.|.++++++................+++.|.+..++.+... +.|..++........
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 45788888755555544 567899999998765544443333468999999977766665543 689999887655333
Q ss_pred E--ecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEecc--ccceeEEEeeecCCCCcEEEEEeCCCcEE
Q 008005 438 I--EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGH--KRARFVIRSCFGGFEQAFIASGSEDSQVY 512 (581)
Q Consensus 438 ~--~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~sgs~dg~I~ 512 (581)
. ..-.....+++++++..|+.+. ..+.|..+|+... ......... ......+.. . .+.++++-...+.|.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav---~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV---F-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEE---E-TTEEEEEETTTTEEE
T ss_pred EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEE---E-CCEEEEEECCCCeEE
Confidence 2 2345678999999877776665 4568999998753 222222211 112222322 1 356666666778899
Q ss_pred EEeCCCCceEEEecc
Q 008005 513 IWHRYTGELVLALAG 527 (581)
Q Consensus 513 iwd~~~~~~~~~~~~ 527 (581)
.++..+|+.+..+..
T Consensus 233 ~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 233 SANRLTGSDVNLLAE 247 (316)
T ss_dssp EEETTTCCCCEEEEC
T ss_pred EEeCCCCcceEEEec
Confidence 999877776665543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=5.6e-05 Score=68.74 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=120.6
Q ss_pred EEEEEecC-CCeEEEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE-EcCCeEE
Q 008005 351 CLHVYEKT-GVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI-CREAAIL 426 (581)
Q Consensus 351 ~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~ 426 (581)
.+..+... ..-...+.|+. +..+.+.+.+ ..|+.+|+.++++........ ......+...++.+... -.++.+.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEE
Confidence 44555322 33456788875 4445555554 489999999888766554332 22223333345555554 4688999
Q ss_pred EEECCCCe-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc--ceeEEEeeecCCCCcEEE
Q 008005 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~ 503 (581)
+||..+.. ...+.....-..++ +++..|+++..++.|.++|..+. +.+..+..... ....+.-.-+ .+|...+
T Consensus 89 v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~-~~G~lya 164 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEW-VNGELLA 164 (243)
T ss_dssp EEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-ETTEEEE
T ss_pred EEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEE-eCCEEEE
Confidence 99999887 44444444334444 46777777777889999999887 66666554322 1111111111 2566665
Q ss_pred EEeCCCcEEEEeCCCCceEEEeccC-------------CCCEEEEEEcCCCCcEEEEE
Q 008005 504 SGSEDSQVYIWHRYTGELVLALAGH-------------SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~~l~s~ 548 (581)
..-.+..|.+.|..+|+.+..+... ....++|+|+|++.++++||
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5556789999999999998876521 23679999999885566555
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.55 E-value=0.00021 Score=69.34 Aligned_cols=276 Identities=6% Similarity=-0.022 Sum_probs=146.7
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEE-ecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
...+.+|.|.+++..+++ +.+|.| +...+.+..+..... .......+.++.|.+ +. ++.++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 347899999888887775 456754 333333334433321 112344688999976 43 444555664433 223344
Q ss_pred EEEEEec---CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008005 351 CLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 351 ~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
.-..... ....+..+.+.+++..++ ++.+|.|..-.=.+.............+..+++.+++..++++...+..+-
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 3222221 224567777776665544 445665543221233333333333346889999998877766544333333
Q ss_pred EECCCC--eeeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc-ccceeEEEeeecCCCCcEEEE
Q 008005 428 LDREAN--FERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 428 ~d~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s 504 (581)
.|.... ..........+..+.+.+++..++ ++.+|.+++.+.+.+ ..-..+... ......+..+.+.+++.++++
T Consensus 189 ~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (327)
T 2xbg_A 189 WEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLA 266 (327)
T ss_dssp ECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred eCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence 443112 222223456788899999887664 455777766542211 111111111 001011222222556666665
Q ss_pred EeCCCcEEEEeCCCCceEEEecc---CCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 505 GSEDSQVYIWHRYTGELVLALAG---HSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+ .+|.| .+..+.|+.-..+.. +...+.++.|.+++ .++.++.+|.|.-++-
T Consensus 267 g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 267 G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 5 46766 344455554444442 34568899997655 5777788998776654
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=1.7e-05 Score=80.33 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=144.2
Q ss_pred CEEEEEeCC-CCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C----cEEEEeCCCCe
Q 008005 319 PVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K----SICLWDLDGRE 392 (581)
Q Consensus 319 ~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g----~i~vwd~~~~~ 392 (581)
....++|+| ++..|+.+...+.|+.+|+.++...... ........++|+++++.|+++... + .+..++..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 356889998 4566666665588999998876654433 345567899999999977766652 1 34444543321
Q ss_pred E--EeeccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCee-eEEec--CCceEEEEECCCCCEEEEEe-eCCcE
Q 008005 393 L--ESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANFE-RWIEE--EEVITSFSLSKDNKYLLVNL-INQEI 465 (581)
Q Consensus 393 ~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~--~~~i~~~~~sp~~~~l~~~~-~d~~i 465 (581)
. ..... ......++++| ++..+++-..++.|..++..+... ..... ......++|+|++++|+++. ..+.|
T Consensus 217 ~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 1 11111 22467889999 676666666788999999987764 22222 24578899999999665554 57789
Q ss_pred EEEEecCCC-ce--eEEEeccc---cc----------eeEEEeeec--------CCCCcEEEEEeCCCcEEEEeCCCCce
Q 008005 466 HLWSIESDP-KL--VSRYKGHK---RA----------RFVIRSCFG--------GFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 466 ~iwd~~~~~-~~--~~~~~~~~---~~----------~~~i~~~~~--------~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
..++..... .. ...+.+.. .. ......++. .+++.+.++-...+.|+.++ .+|..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 998876421 11 12222210 00 000001111 13456666666677888888 45654
Q ss_pred EEEecc----C-------------CCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 522 VLALAG----H-------------SGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 522 ~~~~~~----h-------------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
...... . -.....|+++|++..++++-...+.|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 333211 0 12578999999532677766677788887764
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.54 E-value=1.6e-06 Score=93.25 Aligned_cols=240 Identities=11% Similarity=0.017 Sum_probs=141.7
Q ss_pred EEEeCC-CCCeEEEeeCCC-----------cEEEEEcCCCcEEE--EEec-CCCeEEEEEEecCCCeEEEEeC-CCcEEE
Q 008005 322 TVSWSP-NDHQLLTCGQEE-----------AIRRWDVNSGECLH--VYEK-TGVGLISCGWFLDGGGIFAGMT-DKSICL 385 (581)
Q Consensus 322 ~l~~sp-~~~~l~s~~~dg-----------~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~sg~~-dg~i~v 385 (581)
++++.+ +++.++.|+.+. .+.+||..+++... .+.. +.....++++..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556667 888888887643 58899998876322 2222 2223334667788999999884 458999
Q ss_pred EeCCCCeEEeeccCccccE-EEEEEeeCCCEEEEEE-cC-----CeEEEEECCCCeeeEEec------CCceEEEEECCC
Q 008005 386 WDLDGRELESWKGQKTLRI-SDMAITDDGKRIISIC-RE-----AAILLLDREANFERWIEE------EEVITSFSLSKD 452 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~------~~~i~~~~~sp~ 452 (581)
||..+............+. .+++..++++.++.|+ .+ ..+.+||..+..-..... ...-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998776655443332222 3455667899999988 34 579999998876322210 000000122345
Q ss_pred CCEEEEEeeCC---------cEEEEEecCCCceeEEEecccc-------ceeEEEeeecCCCCcEEEEEeCCC-------
Q 008005 453 NKYLLVNLINQ---------EIHLWSIESDPKLVSRYKGHKR-------ARFVIRSCFGGFEQAFIASGSEDS------- 509 (581)
Q Consensus 453 ~~~l~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~sgs~dg------- 509 (581)
+..++.++.++ .+..||..+.. .......... .......++-..++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~-w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcc-eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 55556665443 56788887652 2222211111 011112222134678888888543
Q ss_pred ----cEEEEeCCCCceEEEe--ccCCCCE-EEEEEcCCCCcEEEEEECC-----------CcEEEecCCccc
Q 008005 510 ----QVYIWHRYTGELVLAL--AGHSGSV-NCVSWNPANLHMLASASDD-----------RTIRIWGLDQIN 563 (581)
Q Consensus 510 ----~I~iwd~~~~~~~~~~--~~h~~~v-~~l~~~p~~~~~l~s~s~D-----------g~I~iW~~~~~~ 563 (581)
.|.+||..+....... ..+.... .+++..|++ ++++.||.+ ..+.+||..+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 6888888776654433 2222222 345567888 788888864 468999987755
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=1.9e-05 Score=72.40 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=125.0
Q ss_pred cceeecccccC--cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCc
Q 008005 263 QTLQILEAHSD--EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~--~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+.+.++ .|.. -...+.|+ ++.+.++.+.+|.|+++|+.++...... +... -.--.+++.. +...+....++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN-IFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT-CCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC-cceeEEEEeC-CEEEEEEccCCE
Confidence 344555 3443 34688887 4567777888899999999987544333 3322 1123355543 334444556889
Q ss_pred EEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-----cccEEEEEEeeCCCE
Q 008005 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDDGKR 415 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~ 415 (581)
+.+||..+.+.+.++...... ..++ +|++.|+.+..++.|.++|..+.+........ -..++.+.|. +|..
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 999999999999998865432 3444 46788888888899999999886654433221 1245667776 7755
Q ss_pred EEEEEcCCeEEEEECCCCe-eeEEe--------------cCCceEEEEECCCCCEEEEEee
Q 008005 416 IISICREAAILLLDREANF-ERWIE--------------EEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~-~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
.+....++.|.+.|..++. ...+. .....+.++++|+++.|++.+.
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 5544468899999999987 22222 1235789999998877777663
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.54 E-value=4.2e-05 Score=69.57 Aligned_cols=190 Identities=11% Similarity=0.094 Sum_probs=122.7
Q ss_pred cceeecccccC--cEEEEEEcCCCCEEEEEeCC--CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC
Q 008005 263 QTLQILEAHSD--EVWFLQFSHDGKYLASSSKD--QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 263 ~~~~~l~~h~~--~V~~l~~s~~g~~lasgs~d--g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
+.+..+ .|.. -...+.|++ +.+..+.+.+ ..|+.+|+.++..... ..+..+.- --.+++. +++..+....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~f-geGi~~~-~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYF-GAGIVAW-RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCC-EEEEEEE-TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcc-eeEEEEe-CCEEEEEEeeC
Confidence 344555 4543 466899986 5566666654 4899999998743322 22222211 1234443 23444445568
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCc-----cccEEEEEEeeCC
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-----TLRISDMAITDDG 413 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~i~~~~~~ 413 (581)
+.+.+||..+.+.+.++.....+ ..++ +++..|+.+..++.|.++|..+.+........ -..++.+.+. +|
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 89999999999999998865433 3444 56788888778899999999876554333221 1245666665 66
Q ss_pred CEEEEEEcCCeEEEEECCCCe-eeEEe--------------cCCceEEEEECCCCCEEEEEee
Q 008005 414 KRIISICREAAILLLDREANF-ERWIE--------------EEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~-~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
...+..-.+..|.+.|.+++. ...+. .....+.++++|+++.|++.+.
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 655555468899999999987 22222 1235689999998888887763
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=6.3e-05 Score=81.99 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=116.0
Q ss_pred cccC-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEEcccC-CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---
Q 008005 270 AHSD-EVWFLQFS-HDGKYLASSSK-D----QSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--- 338 (581)
Q Consensus 270 ~h~~-~V~~l~~s-~~g~~lasgs~-d----g~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--- 338 (581)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ ..+. ..+. .....++|+||++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 4443 68889999 99998886542 2 25999999876 4211 1111 113468899999888877665
Q ss_pred --CcEEEEEcCCCc--EEEEEec-CCCeEEEEEEecCCCeEEEEeC---CCcEEEEeCCCC--eE--EeeccCccccEEE
Q 008005 339 --EAIRRWDVNSGE--CLHVYEK-TGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGR--EL--ESWKGQKTLRISD 406 (581)
Q Consensus 339 --g~i~vwd~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~--~~--~~~~~~~~~~i~~ 406 (581)
..|.++++.++. ....+.. .......+.|+||+++|+..+. ...|+++|+.++ .. .............
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 258888887764 2233332 2334567899999999887653 346888998764 23 3333333333444
Q ss_pred EEEeeCCCEEEEEEcC-----CeEEEEECCC-Ce-ee-EEecCC--ceEEEEECCCCCEEEEEeeCCc--EEEEEe
Q 008005 407 MAITDDGKRIISICRE-----AAILLLDREA-NF-ER-WIEEEE--VITSFSLSKDNKYLLVNLINQE--IHLWSI 470 (581)
Q Consensus 407 i~~~~~~~~l~~~~~d-----g~i~i~d~~~-~~-~~-~~~~~~--~i~~~~~sp~~~~l~~~~~d~~--i~iwd~ 470 (581)
+.|+ ++..|+..+.. ..|..+|+.+ .. .. .+.+.. .+..+.+. .+.++++...++. |.++++
T Consensus 325 ~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred Eeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4443 36666555433 3788888875 23 33 444443 34555554 2334455556775 445554
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.52 E-value=0.00034 Score=69.96 Aligned_cols=241 Identities=10% Similarity=-0.026 Sum_probs=151.9
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCC----cEEEEEecCCC
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSG----ECLHVYEKTGV 360 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~----~~~~~~~~~~~ 360 (581)
+|+.+. ...|+..++...... . +......+..++|++.+..|+.+ ...+.|..+++... .....+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~---~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT---S-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE---E-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCccee---E-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444444 467888888754221 1 22344568899999866655555 45678888988652 23333333445
Q ss_pred eEEEEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc--CCeEEEEECCCCeeeE
Q 008005 361 GLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFERW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~ 437 (581)
....+++.+.+..|+. -...+.|.+.++++................+++.|.+..|+.... .+.|...++.......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 6778888875555554 445788999999876655554434446899999997777766653 3789999988765333
Q ss_pred E-e-cCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEecc--ccceeEEEeeecCCCCcEEEEEeCCCcEE
Q 008005 438 I-E-EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGH--KRARFVIRSCFGGFEQAFIASGSEDSQVY 512 (581)
Q Consensus 438 ~-~-~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~sgs~dg~I~ 512 (581)
+ . .-.....+++++++..|+.+.. .+.|..+|+... ......... ......+.. ..+.++++-...+.|.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v----~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIF 314 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEE----ETTEEEEEESSSCSEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEE----eCCEEEEecCCCCeEE
Confidence 3 2 2357889999998777777654 578999998764 222222221 122222322 2445666777778999
Q ss_pred EEeCCCCceEEEeccCCCCEEEEE
Q 008005 513 IWHRYTGELVLALAGHSGSVNCVS 536 (581)
Q Consensus 513 iwd~~~~~~~~~~~~h~~~v~~l~ 536 (581)
.+|..+|+.+..+........++.
T Consensus 315 ~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 315 SANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEEcCCCCceEEEecCCCCCceEE
Confidence 999888877776665444455554
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.51 E-value=7.4e-05 Score=74.43 Aligned_cols=252 Identities=9% Similarity=-0.034 Sum_probs=153.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEE
Q 008005 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~ 353 (581)
-.|.+..+.+ +|+.+. ...|+..++.... .. .... ....+..++|.+.+..|+.+ ...+.|..+++..+....
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~-~~--~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-YT--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCC-CE--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCc-EE--EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555533 444443 3568888876432 21 2222 33457899999865555544 456789999988766444
Q ss_pred EEecCCCeEEEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-C-CeEEEEEC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E-AAILLLDR 430 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-g~i~i~d~ 430 (581)
.+.........+++.+.+..|+.. ...+.|.+.++++................+++.|.+..|+.+.. . +.|..++.
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 444333445678888766555544 45678999998765544444333346899999987776666553 3 68999998
Q ss_pred CCCeeeEE--ecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC
Q 008005 431 EANFERWI--EEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 431 ~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
.......+ ........++++|++..|+.+. ..+.|..+|+... .....+.........+.. ..+.++++-..
T Consensus 233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav----~~~~ly~td~~ 307 (386)
T 3v65_B 233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV----FEDSLYWTDWH 307 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE----ETTEEEEEETT
T ss_pred CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE----ECCEEEEeeCC
Confidence 77653333 2334578999998777666654 4567888888754 222222222222222322 24556666667
Q ss_pred CCcEEEEeCCCCceEEEeccCCCCEEEEEE
Q 008005 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 537 (581)
.+.|..++..+|+....+........++++
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 788998987777766666543334444443
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.48 E-value=0.00015 Score=66.82 Aligned_cols=200 Identities=9% Similarity=0.087 Sum_probs=129.6
Q ss_pred eecccccCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEE
Q 008005 266 QILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. + .+.....+.+. ...-.|++.+++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEE
Confidence 3555666789999999987644 456778888888886 3 32222223333 457888999988877776677889999
Q ss_pred EcCCCcE---EEEEe------cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC----CeEEee------ccCccccEE
Q 008005 345 DVNSGEC---LHVYE------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELESW------KGQKTLRIS 405 (581)
Q Consensus 345 d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~~~~~~------~~~~~~~i~ 405 (581)
++..... +.... ........++|.|.++.|+++.......+|.+++ ..+... .......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8865442 22222 1244568999999998888877765555555532 111111 111233578
Q ss_pred EEEEeeCCCEEEE-EEcCCeEEEEECCCCeeeEEecC----------CceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008005 406 DMAITDDGKRIIS-ICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 406 ~i~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
.++++|....+++ ......+..+|............ .....+++.++|+..+ .+..+.++.+.
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence 9999997665554 45567888999887764443332 2568999999998444 46666555554
No 276
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.38 E-value=2.6e-07 Score=67.81 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=33.7
Q ss_pred CccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccC
Q 008005 60 VIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (581)
Q Consensus 60 ~~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~ 95 (581)
.++++||++||++||+|.||.+||++|++||+|.-.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 378999999999999999999999999999998865
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.32 E-value=0.0011 Score=64.98 Aligned_cols=234 Identities=9% Similarity=-0.021 Sum_probs=141.8
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccC
Q 008005 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~ 399 (581)
+|.+..+++ +|+.+. ...|+..++........... ...+..++|.+.++.|+... ..+.|..+++++.........
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 455555533 333333 34588888776555444433 34578999998766666554 567899999987655444333
Q ss_pred ccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCCCeeeEE--ecCCceEEEEECCCCCEEEEEee-C-CcEEEEEecCCC
Q 008005 400 KTLRISDMAITDDGKRIISI-CREAAILLLDREANFERWI--EEEEVITSFSLSKDNKYLLVNLI-N-QEIHLWSIESDP 474 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~ 474 (581)
.......+++.+.+..|+.+ ...+.|.+++......... ........++++|.+..|+.+.. . +.|..+++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~- 192 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 192 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-
Confidence 33356789999766555544 4568999999887653332 23356789999997666665543 3 67888887653
Q ss_pred ceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
....+.. .........++ ++ ++.+.++-+..+.|..+|+........+........++++. .+ .++++-...+.
T Consensus 193 -~~~~~~~-~~~~~PnGla~-d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~ 267 (349)
T 3v64_C 193 -GRRIIAD-THLFWPNGLTI-DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKS 267 (349)
T ss_dssp -SCEESCC-SSCSCEEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTE
T ss_pred -CcEEEEE-CCCCCcceEEE-eCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCe
Confidence 2222211 11111122233 54 44555555567789999976543333333334567788883 34 56667667788
Q ss_pred EEEecCCccc
Q 008005 554 IRIWGLDQIN 563 (581)
Q Consensus 554 I~iW~~~~~~ 563 (581)
|..++..+++
T Consensus 268 V~~~~~~~G~ 277 (349)
T 3v64_C 268 INSANKFTGK 277 (349)
T ss_dssp EEEEETTTCC
T ss_pred EEEEEccCCC
Confidence 8888754444
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.00016 Score=72.99 Aligned_cols=235 Identities=13% Similarity=0.091 Sum_probs=139.2
Q ss_pred CEEEEEeCCC--CCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCC
Q 008005 319 PVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGR 391 (581)
Q Consensus 319 ~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~ 391 (581)
....++|+|+ +..|+.+...+.|+.+|..++...... ........+++.++++ |+.+...+ .+...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3568999984 445555554489999999887765443 3445688999999999 55554422 2333333221
Q ss_pred eE--EeeccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCee--eEEec--CCceEEEEECCCCCEEEEEe-eCC
Q 008005 392 EL--ESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANFE--RWIEE--EEVITSFSLSKDNKYLLVNL-INQ 463 (581)
Q Consensus 392 ~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~--~~~i~~~~~sp~~~~l~~~~-~d~ 463 (581)
.. .... .......++++| ++...++-..++.|+.+|..++.. ..... ......++++|++++|+++. ..+
T Consensus 218 ~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 1111 123467788999 666665655778999999986553 22221 22234699999999666654 467
Q ss_pred cEEEEEecCCCc-e--eEEEeccc---c----------ceeEEEeeec--------CCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 464 EIHLWSIESDPK-L--VSRYKGHK---R----------ARFVIRSCFG--------GFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 464 ~i~iwd~~~~~~-~--~~~~~~~~---~----------~~~~i~~~~~--------~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
.|+.++...... . ...+.+.. + .......++. ..++.+.++-..++.|+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 899988763211 1 12222210 0 0011112221 456667777777788998884 56
Q ss_pred ceEEEeccC------------------CCCEEEEEEc-CCCCcEEEEEECCCcEEEecCC
Q 008005 520 ELVLALAGH------------------SGSVNCVSWN-PANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 520 ~~~~~~~~h------------------~~~v~~l~~~-p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
... .+.+. -....+|+++ +++ .++++-...+.|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence 443 33221 1236789999 556 677666677788887764
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.29 E-value=0.0024 Score=61.52 Aligned_cols=199 Identities=11% Similarity=-0.006 Sum_probs=126.2
Q ss_pred cCcEEEEEEcCCCCEEE-EEeCCCeEEEEEcccC---CeeeEEEEecCCCCCEEEEEeCCCCC-eEEEeeCCCcEEEEEc
Q 008005 272 SDEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKED---GQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDV 346 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~la-sgs~dg~i~iwd~~~~---~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~ 346 (581)
...+..++|++++..|. +-..++.|..++.... ... ...+...-.....+++.+.+. +.++-...+.|.+.+.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~--~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc--EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34578999998665444 4455688999988641 111 112222223457888886444 4455566789999998
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCC
Q 008005 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REA 423 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg 423 (581)
........+.........+++.|.+..++.+... +.|...++++.....+........+.+++++++..|+.+. ..+
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence 7554433343344567899999977777666543 6899999877655444333334688999999887777665 457
Q ss_pred eEEEEECCCCeee-EEec---CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 424 AILLLDREANFER-WIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 424 ~i~i~d~~~~~~~-~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.|..+|....... +... ......+++. .+..+++....+.|..++..++
T Consensus 187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 9999999865533 2221 2346677775 3444555555678888887655
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.0011 Score=61.02 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=128.1
Q ss_pred EEecCCCeEEEEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+.+-...+..++|.|+++.|++ ...++.|...|..+................+++.+++.++++.-.++.+.++++..
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 34455567999999998776665 66788999999985544444333334788999998887666655778899988765
Q ss_pred Cee----eEE-------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC--CceeEEEec-------cccceeEEEe
Q 008005 433 NFE----RWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD--PKLVSRYKG-------HKRARFVIRS 492 (581)
Q Consensus 433 ~~~----~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~-------~~~~~~~i~~ 492 (581)
... ... ..+.....++|+|+++.|+++.......+|.+... ...+..... .......+
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l-- 178 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA-- 178 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE--
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE--
Confidence 331 111 22344689999999988888887766666666521 011222211 11111122
Q ss_pred eecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCC---------CCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS---------GSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+.+..+.+++....+..|.++|.. |+.+..+.-.. ..--+|+|.++| +++++ ++-+.++.+.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEE
Confidence 2334566777777788899999965 66665543221 256899999999 55554 6666555543
No 281
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.00026 Score=71.74 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=146.5
Q ss_pred CEEEEEeCC-CCCeEEEeeC-CCcEEEEEcCCCcEEEEEecC---CCeEEEEEE-------ecCCCeEEEEeCCC-----
Q 008005 319 PVFTVSWSP-NDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKT---GVGLISCGW-------FLDGGGIFAGMTDK----- 381 (581)
Q Consensus 319 ~V~~l~~sp-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~sg~~dg----- 381 (581)
....|+|+| ++..|+.+.. .+.|++.|..++......... ......++| ++++.+++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 3555555544 467888998877765554432 235789999 99999777776654
Q ss_pred --cEEEEeCCC-CeEE------eeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECC-------CCee---------
Q 008005 382 --SICLWDLDG-RELE------SWKGQKTLRISDMAITDDG-KRIISICREAAILLLDRE-------ANFE--------- 435 (581)
Q Consensus 382 --~i~vwd~~~-~~~~------~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~-------~~~~--------- 435 (581)
.|.+++... +... .... ......++++|++ ..+++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665433 1221 1111 1245678889954 445555677889999987 3332
Q ss_pred ----eEE--ecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCcee---EEEecc---cc---------c-eeEEEe
Q 008005 436 ----RWI--EEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLV---SRYKGH---KR---------A-RFVIRS 492 (581)
Q Consensus 436 ----~~~--~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~---~~~~~~---~~---------~-~~~i~~ 492 (581)
... ........++|+|++++|+++ +..+.|+.++.......+ ..+.+. .+ . ......
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 223456899999999965555 456788887775432221 233222 00 0 001101
Q ss_pred eecC-------CCCcEEEEEeCCCcEEEEeCCCCceEEEeccC------------------------CCCEEEEEEcCC-
Q 008005 493 CFGG-------FEQAFIASGSEDSQVYIWHRYTGELVLALAGH------------------------SGSVNCVSWNPA- 540 (581)
Q Consensus 493 ~~~~-------~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h------------------------~~~v~~l~~~p~- 540 (581)
++.. .++.++++-..++.|+.++ .+|. +.++.+. -....+|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 2222 4567777777788999998 4564 3344321 124678999997
Q ss_pred CCcEEEEEECCCcEEEecCCcccccc
Q 008005 541 NLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+ .++++=.....|+.++++.....+
T Consensus 456 g-~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 456 E-MFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp T-EEEEEETTTTEEEEEEECCCC---
T ss_pred C-EEEEEeCCCCEEEEEECCCCcccc
Confidence 6 677766677899999998765543
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.25 E-value=0.0024 Score=63.66 Aligned_cols=202 Identities=11% Similarity=-0.004 Sum_probs=129.7
Q ss_pred ccCcEEEEEEcCCCCEEEEE-eCCCeEEEEEcccCCe-eeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcC
Q 008005 271 HSDEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasg-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~ 347 (581)
....+..++|++.+..|..+ ...+.|..+++..... ......+.........+++.+ .+++.++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 44678899999865555444 4567888888764210 011122233345577888887 44455555567889999987
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCe
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAA 424 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~ 424 (581)
.......+...-.....+++.|.+..|+.... .+.|...++++.....+........+.+++++++..|+.+. ..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 66554445444456789999997777776653 36899999987655444433334789999998888877775 4678
Q ss_pred EEEEECCCCeee-EEec---CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 425 ILLLDREANFER-WIEE---EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 425 i~i~d~~~~~~~-~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
|..+|+...... +... ......+++. .+..+++....+.|..+|..++
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 999998876533 2222 2345667763 3344455555678888886655
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.0007 Score=65.21 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=139.3
Q ss_pred CCeEEEEEcccCC-eeeEEEEecCCCCCEEEEEeCCCCCeEE-EeeCCCcEEEEEcCCCcE-EEEEecCCCeEEEEEEec
Q 008005 293 DQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSGEC-LHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 293 dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~ 369 (581)
...|+..++.... ..... +.+ ...+.+++|.+.+..|+ +-...+.|..+++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~--~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV--VGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE--EEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEE--ecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 4568888887542 11111 111 12467899998555544 445567899999876532 122222223456788887
Q ss_pred CCCeEEE-EeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc--CCeEEEEECCCCeeeEE--ecCCce
Q 008005 370 DGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFERWI--EEEEVI 444 (581)
Q Consensus 370 ~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~--~~~~~i 444 (581)
.+..|+. -...+.|.++++++................+++.|.+..++.+.. .+.|..++........+ ..-...
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P 168 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP 168 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc
Confidence 5555554 445678999999875544444333446899999997767766653 57899999876553322 223467
Q ss_pred EEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 008005 445 TSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 523 (581)
..++++|++..|+.+. ..+.|..+|+... .......+.......+.. . .+.++++-...+.|..++..+|+...
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav---~-~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTL---F-EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEE---E-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEE---e-CCEEEEEecCCCeEEEEECCCCCceE
Confidence 8999999777666654 4678999998754 222222222222222322 1 34566666677899999987887665
Q ss_pred Eecc
Q 008005 524 ALAG 527 (581)
Q Consensus 524 ~~~~ 527 (581)
.+..
T Consensus 244 ~i~~ 247 (318)
T 3sov_A 244 EIHS 247 (318)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5543
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.22 E-value=0.00082 Score=66.81 Aligned_cols=235 Identities=9% Similarity=-0.031 Sum_probs=143.7
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccC
Q 008005 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~ 399 (581)
.|.+..+.+ +|+.+. ...|+..++........... ...+..++|.+.+..|+... ..+.|..+++++.....+...
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 344444533 444333 35788888877665444433 34578999998666666554 567899999987765554443
Q ss_pred ccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCCCeeeEE--ecCCceEEEEECCCCCEEEEEee-C-CcEEEEEecCCC
Q 008005 400 KTLRISDMAITDDGKRIISI-CREAAILLLDREANFERWI--EEEEVITSFSLSKDNKYLLVNLI-N-QEIHLWSIESDP 474 (581)
Q Consensus 400 ~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~ 474 (581)
.......+++.+.+..|+.+ ...+.|.++++........ ........++++|.+..|+.+.. . +.|..+++...
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~- 235 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 235 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-
Confidence 33356788999766655544 4567899998876653222 23356889999997777666554 3 57888887654
Q ss_pred ceeEEEeccccceeEEEeeecCC-CCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCc
Q 008005 475 KLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
.........-.. ....++ ++ .+.+.++-+..+.|..+|+........+........++++. .+ .++++-...+.
T Consensus 236 ~~~~~~~~~~~~--PnGlav-d~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~ 310 (386)
T 3v65_B 236 GRRIIADTHLFW--PNGLTI-DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKS 310 (386)
T ss_dssp SCEEEECSSCSC--EEEEEE-EGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTE
T ss_pred CcEEEEECCCCC--eeeEEE-eCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCe
Confidence 222222111111 122222 54 44455555667789999976544333343344567888883 34 57777777788
Q ss_pred EEEecCCcccc
Q 008005 554 IRIWGLDQINM 564 (581)
Q Consensus 554 I~iW~~~~~~~ 564 (581)
|..++..+++.
T Consensus 311 V~~~~~~~G~~ 321 (386)
T 3v65_B 311 INSANKFTGKN 321 (386)
T ss_dssp EEEEETTTCCS
T ss_pred EEEEECCCCcc
Confidence 88888545443
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00031 Score=70.90 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=95.7
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-C----cEEEEEcC
Q 008005 274 EVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E----AIRRWDVN 347 (581)
Q Consensus 274 ~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g----~i~vwd~~ 347 (581)
....++++| ++..|..+...+.|+.+|...+ .+. .+.........++|++++++|+.+... + .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 457899998 4555666655578888888753 222 222344568899999999966666542 2 2333343
Q ss_pred CCcEE--EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEeec-cCccccEEEEEEeeCCCEEEEE-EcC
Q 008005 348 SGECL--HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMAITDDGKRIISI-CRE 422 (581)
Q Consensus 348 ~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~-~~d 422 (581)
.+... ..+.. ......+++.| ++..+++-..++.|..++..+....... .........++++|++++|+.+ ...
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 33221 22222 23356778899 5555555556789999999877653322 2222357889999999966555 457
Q ss_pred CeEEEEECCC
Q 008005 423 AAILLLDREA 432 (581)
Q Consensus 423 g~i~i~d~~~ 432 (581)
+.|..++...
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 7899987653
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.17 E-value=0.0021 Score=69.60 Aligned_cols=233 Identities=10% Similarity=-0.019 Sum_probs=141.6
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEE-EeeCCCcEEEEEcCCC----cEEEEEecCCC
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEAIRRWDVNSG----ECLHVYEKTGV 360 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg~i~vwd~~~~----~~~~~~~~~~~ 360 (581)
+|+.+. ...|+..++..... .. +......+..|+|.+.+..|+ +-...+.|+.+++... .....+.....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~---~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEY---TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCC---EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccc-ccceeEeeccCCcc---ee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 344333 34577777764321 11 222345678999998555544 4455678888888753 22333333344
Q ss_pred eEEEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc--CCeEEEEECCCCeeeE
Q 008005 361 GLISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFERW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~ 437 (581)
....+++.+.++.|+.+ ...+.|.+.++++.....+..........|++.|.+..|+.+.. .+.|...++.......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 56678888777666555 45779999999877665555444446899999998777766653 3789999988766433
Q ss_pred Eec--CCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEE
Q 008005 438 IEE--EEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 438 ~~~--~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
+.. ......|++++.+..|+.+. ..+.|..+++... ...............+.... ..+.++++-...+.|...
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~ 628 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSA 628 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEE
Confidence 322 35788999998777777664 3567888888764 33333332211111122222 134555565667788888
Q ss_pred eCCCCceEEEec
Q 008005 515 HRYTGELVLALA 526 (581)
Q Consensus 515 d~~~~~~~~~~~ 526 (581)
|..+|+.+..+.
T Consensus 629 dk~tG~~~~~l~ 640 (791)
T 3m0c_C 629 NRLTGSDVNLLA 640 (791)
T ss_dssp ETTTCCCCEEEE
T ss_pred eCCCCcceEEee
Confidence 877776655553
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.0013 Score=66.32 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=112.7
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC---Cc-EEEEEc
Q 008005 273 DEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EA-IRRWDV 346 (581)
Q Consensus 273 ~~V~~l~~s~~--g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~-i~vwd~ 346 (581)
.....++|+|+ +..|..+...+.|+.++..++ .+ ..+........+++|+++++++++.... .. +...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v---~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YV---DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-EE---EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC-EE---EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 34678999985 344544544488999998654 22 2233344568899999999944443311 11 333332
Q ss_pred CCCcE-EEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeE-Eeec-cCccccEEEEEEeeCCCEEEEEE-c
Q 008005 347 NSGEC-LHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL-ESWK-GQKTLRISDMAITDDGKRIISIC-R 421 (581)
Q Consensus 347 ~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~~-~~~~~~i~~i~~~~~~~~l~~~~-~ 421 (581)
..+.. ...+. .......+++.| ++..+++-..++.|+.+|..++.. .... .........++++|++++|+.+. .
T Consensus 215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 22211 11121 123345678888 554444545678899999986554 2222 11122334699999999666555 5
Q ss_pred CCeEEEEECCC--Ce----eeEEec---------------CCceEEEEE---------CCCCCEEEEEeeCCcEEEEEe
Q 008005 422 EAAILLLDREA--NF----ERWIEE---------------EEVITSFSL---------SKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 422 dg~i~i~d~~~--~~----~~~~~~---------------~~~i~~~~~---------sp~~~~l~~~~~d~~i~iwd~ 470 (581)
.+.|+.++... +. ..+... -.....+++ .+++.++++-..++.|+.++.
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 67899988653 21 111111 123567888 777777776666778888874
No 288
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.02 E-value=0.012 Score=62.17 Aligned_cols=285 Identities=9% Similarity=-0.021 Sum_probs=154.4
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC--CCcEEEEEcCCC
Q 008005 273 DEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--EEAIRRWDVNSG 349 (581)
Q Consensus 273 ~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~--dg~i~vwd~~~~ 349 (581)
.....+++.+.+. +.++-...+.|.+.+.+.... .. .....-.....|++.|.+.+|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 5678999998555 445555678899999874321 11 12233344678999987666655543 356666676543
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEE-EcCCeEEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI-CREAAILL 427 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i 427 (581)
.........-.....+++.++++.|+.+. ..+.|..+|+++................+++..+ .++.+ ...+.|..
T Consensus 161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~ 238 (619)
T 3s94_A 161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILA 238 (619)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEE
T ss_pred ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEE
Confidence 33333333345678999999877777665 4568999999875544433312223456666554 44444 45667888
Q ss_pred EECCCCe-eeEE------------ecC--------------C-------------ceEEEE-----ECCCC-------CE
Q 008005 428 LDREANF-ERWI------------EEE--------------E-------------VITSFS-----LSKDN-------KY 455 (581)
Q Consensus 428 ~d~~~~~-~~~~------------~~~--------------~-------------~i~~~~-----~sp~~-------~~ 455 (581)
.|..++. ...+ .|. + ...|.+ +.+|+ ..
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 8876543 1000 000 0 011111 01111 11
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEE
Q 008005 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCV 535 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l 535 (581)
++.-+..+.|+..++.........+. .......+...+...++.++++-...+.|+.++.........+...-....++
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~-~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl 397 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI 397 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEECC-CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEEcccceEEEecCCCccceeEEe-ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce
Confidence 22223355666666655321111111 11111123333423355556666667889888876544433343333567789
Q ss_pred EEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 536 SWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
++.+.+.+++++-+..+.|.+.+++...
T Consensus 398 AvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 398 AVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 9987554677776677889998887543
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.0036 Score=61.22 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=121.5
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE--EEe---cCCCeEEEEEEecC---CCeEEEEeCC------CcEE
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH--VYE---KTGVGLISCGWFLD---GGGIFAGMTD------KSIC 384 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~---~~~~~v~~~~~~~~---~~~l~sg~~d------g~i~ 384 (581)
....++|.|+|+++++ ..+|.|.+++ +++... .+. ........++++|+ +..|+++... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4679999999985554 5669999998 454221 111 12356789999998 6666655442 6788
Q ss_pred EEeCCCCeE------Ee-ec--cCccccEEEEEEeeCCCEEEEEEc-------------CCeEEEEECCCC---------
Q 008005 385 LWDLDGREL------ES-WK--GQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN--------- 433 (581)
Q Consensus 385 vwd~~~~~~------~~-~~--~~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------- 433 (581)
.|+.....+ .. .. .........++|.|||...++.+. .+.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888764311 11 11 111123578999999976665432 257777776641
Q ss_pred ----e-eeEEecCCceEEEEECC-CCCEEEEEeeCCcE------EEEEecCCC-----------------ceeEEEeccc
Q 008005 434 ----F-ERWIEEEEVITSFSLSK-DNKYLLVNLINQEI------HLWSIESDP-----------------KLVSRYKGHK 484 (581)
Q Consensus 434 ----~-~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i------~iwd~~~~~-----------------~~~~~~~~~~ 484 (581)
. ..+.........++|+| ++.++++-...+.+ .+.-+..+. .++..+..+.
T Consensus 189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 268 (352)
T 2ism_A 189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGF 268 (352)
T ss_dssp CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCC
Confidence 1 22222234467899999 56555443333321 122222221 1122221111
Q ss_pred cceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCce------EEEeccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 485 RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL------VLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
.+ ....+ .+|.++++.-..+.|...++..... ...+..-...+.++++.|+| .++++..
T Consensus 269 ap---~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~ 333 (352)
T 2ism_A 269 PP---GNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTTS 333 (352)
T ss_dssp CE---EEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEEC
T ss_pred CC---cceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-cEEEEEe
Confidence 11 11222 3566666666667777777654321 12222223678999999999 5665543
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0022 Score=60.83 Aligned_cols=158 Identities=7% Similarity=0.019 Sum_probs=109.0
Q ss_pred CCCCEEEEEeCCCCCeEEEee-CCCcEEEEEcCCCcEEEEEecC-------CCeEEEEEE---ecCCCeEEEEe------
Q 008005 316 HRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNSGECLHVYEKT-------GVGLISCGW---FLDGGGIFAGM------ 378 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~sg~------ 378 (581)
..-.--+++|.+....|..++ ..++|..||...+......... ...+..+.| .|++..+++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 333445789987555555555 7899999999866544332111 114678999 58866666443
Q ss_pred -------CCCcEEEEeCC---CCeEEeeccC-------------ccccEEEEEEeeCCCEEEEEEcC-CeEEEEECCCCe
Q 008005 379 -------TDKSICLWDLD---GRELESWKGQ-------------KTLRISDMAITDDGKRIISICRE-AAILLLDREANF 434 (581)
Q Consensus 379 -------~dg~i~vwd~~---~~~~~~~~~~-------------~~~~i~~i~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 434 (581)
.+..|..+|+. +++....... ......+++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 15779999998 4443322211 11258899999999999999988 999999887664
Q ss_pred ee-EEecC------CceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 435 ER-WIEEE------EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 435 ~~-~~~~~------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.. +.... ...+.++++|+++.|++....+.+..+|+...
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 22 22111 22669999999999999877999999998853
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.98 E-value=0.003 Score=59.92 Aligned_cols=158 Identities=9% Similarity=0.110 Sum_probs=111.7
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEEcccCCeeeEEEEecC----CCC--CEEEEEe---CCCCCeEEEee--------
Q 008005 275 VWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSG----HRK--PVFTVSW---SPNDHQLLTCG-------- 336 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~----h~~--~V~~l~~---sp~~~~l~s~~-------- 336 (581)
--+++|.+....|..++ ..++|..|+...+.. ... .+.+ ... .+..|.| .|++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34788987555555555 789999999874422 222 3332 111 3689999 68877777543
Q ss_pred -----CCCcEEEEEcC---CCcEEEEEec-------------CCCeEEEEEEecCCCeEEEEeCC-CcEEEEeCCCCeEE
Q 008005 337 -----QEEAIRRWDVN---SGECLHVYEK-------------TGVGLISCGWFLDGGGIFAGMTD-KSICLWDLDGRELE 394 (581)
Q Consensus 337 -----~dg~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~sg~~d-g~i~vwd~~~~~~~ 394 (581)
.+..|..||+. +++.+....- .......++..++|+..++++.. +.|..++.++....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 25779999999 7876655541 11358899999999999999988 89888888876554
Q ss_pred eeccC-----ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008005 395 SWKGQ-----KTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 395 ~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.+... .....+.|+++|+|+.|++....+.+..+|+....
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv 217 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY 217 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence 44311 12236799999999999999889999999988543
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.97 E-value=0.0039 Score=59.96 Aligned_cols=198 Identities=7% Similarity=-0.063 Sum_probs=125.2
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCCc
Q 008005 273 DEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 273 ~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
..+..++|.+.+. +..+-...+.|..++......... .+...-.....+++.+. +.+.++-...+.|.++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 3566899998544 445555678888888875421111 11112234567888864 4445555567789999987544
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i 427 (581)
....+.........+++.|.+..++.+.. .+.|...++++..........-...+.+++++++..|+.+. ..+.|..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 33333344456789999987777776653 57899999886544443333334678999999777776665 4678999
Q ss_pred EECCCCeee-EEe-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 428 LDREANFER-WIE-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 428 ~d~~~~~~~-~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
+|....... +.. .......+++.. +..+++-...+.|..++..++
T Consensus 193 ~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 193 SNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 998765532 222 344566777753 344444445677888887655
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.97 E-value=0.021 Score=60.45 Aligned_cols=229 Identities=10% Similarity=-0.014 Sum_probs=143.5
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEe-eCCCcEEEEEcCCCcEEEEEecCCCeEEE
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLIS 364 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 364 (581)
+|+.+ ....|+..++..... .....+. .-..+..++|++.+..|+.+ ..++.|..+++........+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~-~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN-NVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC-EEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCc-ceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 44444 456788888875422 1111122 23457899999966665544 45788999998765444444333345668
Q ss_pred EEEecCCCeEEEEe-CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc--CCeEEEEECCCCe-eeEEec
Q 008005 365 CGWFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANF-ERWIEE 440 (581)
Q Consensus 365 ~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~~~ 440 (581)
+++.+.+..|+.+. ..+.|.+.++++................+++.|....|+.... .+.|...++.... ......
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC
Confidence 88887666665554 5678999999875544433333346899999986666666653 5788888887765 333445
Q ss_pred CCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 441 EEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 441 ~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
......+++++++..|+.+.. .+.|..+|+..... ..+.......+.+. .. .+.++++-...+.|...|..+|
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~gla--v~--~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLT--QY--QDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEE--EE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEE--EE--CCEEEEecCCCCEEEEEECCCC
Confidence 567889999998777766654 67899999876533 23332222222332 21 2455555556788988887766
Q ss_pred ceEE
Q 008005 520 ELVL 523 (581)
Q Consensus 520 ~~~~ 523 (581)
+...
T Consensus 239 ~~~~ 242 (628)
T 4a0p_A 239 QNRT 242 (628)
T ss_dssp CSCE
T ss_pred CceE
Confidence 5433
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.97 E-value=0.028 Score=59.34 Aligned_cols=199 Identities=7% Similarity=-0.046 Sum_probs=122.7
Q ss_pred cCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCC
Q 008005 272 SDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~ 349 (581)
-..+..++|++.+..|..+. ..+.|..++.+.... ....+...-.....+++.+.+..| ++-...+.|.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34577999998666665544 467788888864321 112233333568899999855544 44456788999998755
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~ 426 (581)
.....+...-.....+++.|.+..|+.+.. .+.|...++++..............+.+++++++..|+.+. ..+.|.
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 433333344445678999997777766653 46788888877554444433344689999999877776665 467899
Q ss_pred EEECCCCeeeEE-e-cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 427 LLDREANFERWI-E-EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 427 i~d~~~~~~~~~-~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.+|+........ . .......+++..+ ..+++-...+.|...|..++
T Consensus 197 ~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 197 KSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 999877652222 1 2233456677655 33333344677888887654
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.94 E-value=0.014 Score=54.80 Aligned_cols=261 Identities=8% Similarity=0.141 Sum_probs=162.5
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
+..|.|-|+..+... .+.-..-. +.-.+|..+.+|.-. ..++.|+|+++.+.++.+.-.. .|.-=.|-.+.
T Consensus 48 ~~~VvIiDl~n~~~~--~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~- 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNP--IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 118 (365)
T ss_dssp EEEEEEEETTSTTSC--EEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSS-
T ss_pred CCEEEEEECCCCCCc--cccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCC-
Confidence 347888898875543 22222222 334588888777665 5789999999999988887654 66666676443
Q ss_pred eEEEEeCCCcEEEEeCCC--CeEEeecc---CccccEEEEEEeeCCCEEEEEEc-------CCeEEEEECCCCeeeE-Ee
Q 008005 373 GIFAGMTDKSICLWDLDG--RELESWKG---QKTLRISDMAITDDGKRIISICR-------EAAILLLDREANFERW-IE 439 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~--~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~-~~ 439 (581)
.|+..+ +..|+-|++.+ ...+.+.. .....|..-..+++.++++..+- .|.+.+|..+.+.... .+
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 197 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 197 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeee
Confidence 444332 46899999964 22222222 12346778888899998876653 3678899988877333 33
Q ss_pred cCCceEEEEECC--C-CCEEEEEee---CCcEEEEEecCCC--c------eeEEE-eccccceeEEEeeecCCCCcEEEE
Q 008005 440 EEEVITSFSLSK--D-NKYLLVNLI---NQEIHLWSIESDP--K------LVSRY-KGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 440 ~~~~i~~~~~sp--~-~~~l~~~~~---d~~i~iwd~~~~~--~------~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
|......+.+.. . .+.++.+.. .+.+++.++...+ . .+..+ .......+.+.... ++....++.
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv-s~kygviyv 276 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 276 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe-cccCCEEEE
Confidence 333333332221 1 123333333 2588999885431 1 11111 11122334444333 566678889
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
-+.-|.|++||+.++.++..-+-...+|..-+-+... .=++.....|.|.--.+++.++.
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~-~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG-TEEEEEETTCEEEEEEECTTTHH
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC-CcEEEEcCCCEEEEEEECcccEe
Confidence 9999999999999999998777667777766655443 24666678898888888776654
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.93 E-value=0.0093 Score=57.61 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=123.7
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
...+.+|.|.+ +..++. +.++.|.. ..+.+..+........+.+.+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688899976 444444 45664433 333344444333222344567888887766665554 4554422 1223433
Q ss_pred EEE-EecCCCeEEEEEEecCCCeEEEEeCCCcEEE-EeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008005 352 LHV-YEKTGVGLISCGWFLDGGGIFAGMTDKSICL-WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 352 ~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v-wd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
-.. .......+..+.+.+++..++++. +|.+.. +|-.+.............+..+.+.+++..+ .++.+|.+++.+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEec
Confidence 222 233455788899999877666554 454443 4432222222222334478889999888654 556778887765
Q ss_pred CCCCe--eeEE-e---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec---cccceeEEEeeecCCCCc
Q 008005 430 REANF--ERWI-E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG---HKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 430 ~~~~~--~~~~-~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~ 500 (581)
...+. .... . ....+..+.+.+++..++++. ++.+ ++..+.+ ..-..+.. .....+.+.. ..+ .
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~---~~~-~ 304 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILF---FSP-D 304 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEE---EET-T
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEE---ECC-C
Confidence 33232 1111 1 123578899998877666654 6666 3444443 33333321 1223333322 223 3
Q ss_pred EEEEEeCCCcEEEEe
Q 008005 501 FIASGSEDSQVYIWH 515 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd 515 (581)
.+++++.+|.|.-++
T Consensus 305 ~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 305 QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEECSTTEEEEEC
T ss_pred ceEEEcCCceEEEEc
Confidence 466677888877765
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.90 E-value=0.005 Score=58.94 Aligned_cols=194 Identities=16% Similarity=0.262 Sum_probs=123.6
Q ss_pred CCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEec----CCCe--E-EEEeC---CCcEEEEeC--CCCeEEee
Q 008005 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL----DGGG--I-FAGMT---DKSICLWDL--DGRELESW 396 (581)
Q Consensus 329 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l-~sg~~---dg~i~vwd~--~~~~~~~~ 396 (581)
..+++.....+-+.+||+ +|+.+..+.. ..+..+..-| .++. + ++... +++|.+|++ .++++...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 355666677788999999 8988888754 3455555544 2322 2 33333 578999976 45555444
Q ss_pred ccC-----cc-ccEEEEEE--eeC-CC-EEEEEEcCCeEEEEECCC---Ce-----eeEEecCCceEEEEECCCCCEEEE
Q 008005 397 KGQ-----KT-LRISDMAI--TDD-GK-RIISICREAAILLLDREA---NF-----ERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 397 ~~~-----~~-~~i~~i~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~-----~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
... .. ..+..+++ ++. +. ++++...+|.+..|++.. +. .+.+...+.+..+...+....|++
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 221 11 35666777 664 43 677888899999988832 21 455667788999999999999999
Q ss_pred EeeCCcEEEEEecCC----CceeEEEe-ccc-cceeEEEeeecCCCCc-EEEEEe-CCCcEEEEeCC-CCceEEEec
Q 008005 459 NLINQEIHLWSIESD----PKLVSRYK-GHK-RARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRY-TGELVLALA 526 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~----~~~~~~~~-~~~-~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~-~~~~~~~~~ 526 (581)
+-.+..|..|+.+.. ...+..+. ++- .....+.... .++++ +|++++ .+++..+||.. +.+.+..+.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~-~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY-AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE-CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 998877766665422 13444432 211 2334444332 44444 565555 57799999996 677777764
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.89 E-value=0.044 Score=62.10 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=153.1
Q ss_pred cCcEEEEEEcCC------CCEEEEEeC-CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeC--CCCCeEEEeeCCCcEE
Q 008005 272 SDEVWFLQFSHD------GKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS--PNDHQLLTCGQEEAIR 342 (581)
Q Consensus 272 ~~~V~~l~~s~~------g~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~~~dg~i~ 342 (581)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+-..+ ....+.. .....++.+. ....+|..|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 468999999863 369999996 999999999754332 2222322 1233333332 2345788888999876
Q ss_pred EEEc--CCCcEEEE--EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEE-EEEEeeC--CCE
Q 008005 343 RWDV--NSGECLHV--YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS-DMAITDD--GKR 415 (581)
Q Consensus 343 vwd~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~i~~~~~--~~~ 415 (581)
.+.+ .+|..... ..-...++.-..+...+..-+.+..+....++.-++.-... ......+. ...|+.. ..-
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s--~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFS--NVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEE--EBSSSCCCEEEEECCSSSTTE
T ss_pred EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEe--ccChHHhceEeccCcccCCCc
Confidence 5554 45554322 11223344333343334333333334444444433322111 11111232 2334332 234
Q ss_pred EEEEEcCCeEEEEECCCCe---eeEEecCCceEEEEECCCCCEEEEEeeC------------------------------
Q 008005 416 IISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLIN------------------------------ 462 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d------------------------------ 462 (581)
++..+ ++.+++..+.... .+.+.....+..++++|+.+.++++..+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 44433 4558887765432 5556677888999999988776655422
Q ss_pred -------------------CcEEEEEecCCCceeEEEecccc-ceeEEEeeecC-CCCcEEEEEe----------CCCcE
Q 008005 463 -------------------QEIHLWSIESDPKLVSRYKGHKR-ARFVIRSCFGG-FEQAFIASGS----------EDSQV 511 (581)
Q Consensus 463 -------------------~~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~l~sgs----------~dg~I 511 (581)
+.|++.|-.+. +.+..+.-... ....+..+.+. ....+++.|+ ..|.|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 12455555444 33333332222 22333333333 2357888887 35789
Q ss_pred EEEeCCCCceEEEe-ccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 512 YIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 512 ~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
++|++..+++.... ....++|++++-- +| +++++. ..+|++|++...+.
T Consensus 867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i--g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 867 VVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI--NSTVRLYEWTTEKE 916 (1158)
T ss_dssp EEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE--TTEEEEEEECTTSC
T ss_pred EEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc--CCEEEEEECCCCce
Confidence 99998754432221 1236889998743 34 455544 47899999986653
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.89 E-value=0.015 Score=56.87 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=126.0
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc-EEEEEe---cCCCeEEEEEEecC---CCeEEEEeC----C----Cc
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-CLHVYE---KTGVGLISCGWFLD---GGGIFAGMT----D----KS 382 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~sg~~----d----g~ 382 (581)
.....++|.|+|++++ +..+|.|++++ .+++ .+..+. ........++++|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467999999997544 56669999997 4554 222111 12356889999997 566666544 2 56
Q ss_pred EEEEeCCCC--e---EE---e-eccCccccEEEEEEeeCCCEEEEEEc-------------CCeEEEEECCCC-------
Q 008005 383 ICLWDLDGR--E---LE---S-WKGQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN------- 433 (581)
Q Consensus 383 i~vwd~~~~--~---~~---~-~~~~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------- 433 (581)
|..|+.... . .. . ...........++|.|||...++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 778877643 1 11 1 11111124577999999986666432 256777776543
Q ss_pred -e-eeEEecCCceEEEEECC-CCCEEEEEeeCC---cEEEEEecCCC-----------------ceeEEE-eccccceeE
Q 008005 434 -F-ERWIEEEEVITSFSLSK-DNKYLLVNLINQ---EIHLWSIESDP-----------------KLVSRY-KGHKRARFV 489 (581)
Q Consensus 434 -~-~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~---~i~iwd~~~~~-----------------~~~~~~-~~~~~~~~~ 489 (581)
. ..+.........++|+| ++.++++-...+ .|.+.. .+. .++..+ ..+.. .
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a---p 261 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA---P 261 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC---E
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC---C
Confidence 1 22222233467899999 566555433222 233322 111 112222 11111 1
Q ss_pred EEeeec------CCCCcEEEEEeCCCcEEEEeCCCC-ceE--EEe-ccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 490 IRSCFG------GFEQAFIASGSEDSQVYIWHRYTG-ELV--LAL-AGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 490 i~~~~~------~~~~~~l~sgs~dg~I~iwd~~~~-~~~--~~~-~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
....+. ..+|.++++.-..+.|...++... +.. ..+ .+-...+.++++.||| .++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEEe
Confidence 222221 246777777777778888887753 332 222 2224578999999999 5666654
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.0028 Score=64.23 Aligned_cols=195 Identities=8% Similarity=0.037 Sum_probs=110.9
Q ss_pred cEEEEEEcCC-CC-EEEEEeCCCeEEEEEcccCCeeeEEEEe-cCCCCCEEEEEe-------CCCCCeEEEeeCCC-c--
Q 008005 274 EVWFLQFSHD-GK-YLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSW-------SPNDHQLLTCGQEE-A-- 340 (581)
Q Consensus 274 ~V~~l~~s~~-g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~-------sp~~~~l~s~~~dg-~-- 340 (581)
....|+|+|. +. ++++....+.|++.|...+ .+..+... .........++| ++++.+|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999983 44 4444444466888887653 22222211 112235899999 99998676666544 2
Q ss_pred ----EEEEEcCC-CcEE-----EEEecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCC-------CCeE---------
Q 008005 341 ----IRRWDVNS-GECL-----HVYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLD-------GREL--------- 393 (581)
Q Consensus 341 ----i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~-------~~~~--------- 393 (581)
|.+.+... +... ..+... .....++.+|++..|+ +-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 55665333 2211 122221 2334677888555555 45567789999987 4443
Q ss_pred ---Ee-eccCccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCC--Ce----eeEEec---C------------CceE-E
Q 008005 394 ---ES-WKGQKTLRISDMAITDDGKRIISI-CREAAILLLDREA--NF----ERWIEE---E------------EVIT-S 446 (581)
Q Consensus 394 ---~~-~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~--~~----~~~~~~---~------------~~i~-~ 446 (581)
.. ...........++|+|+|+.|+.+ +..+.|+.++... +. ..+... . .... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 11 112222356789999999965555 4567888866433 22 112221 0 1233 4
Q ss_pred EEEC-------CCCCEEEEEeeCCcEEEEEe
Q 008005 447 FSLS-------KDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 447 ~~~s-------p~~~~l~~~~~d~~i~iwd~ 470 (581)
++.. +++.++++-..++.|+.++.
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 5554 45666666666778888873
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.86 E-value=0.043 Score=57.95 Aligned_cols=196 Identities=9% Similarity=-0.076 Sum_probs=124.4
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcCCCc
Q 008005 273 DEVWFLQFSHDGKYLA-SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 273 ~~V~~l~~s~~g~~la-sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~ 350 (581)
..+..++|++.+..|. +-..++.|..+++.... .. ..+.........+++.+.+..| ++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence 4678999999666554 44567888888886432 11 1222222346678887655544 444556789999987554
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i 427 (581)
....+...-.....+++.|....|+.... .+.|...++++........ .......+++++++..|+.+. ..+.|..
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~ 192 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIES 192 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEE
Confidence 33333334456789999997667776653 5688888888765544433 234789999999877777665 4678999
Q ss_pred EECCCCeee-EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 428 LDREANFER-WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 428 ~d~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
+|+...... ..........+++.. +..+++-...+.|...|..++
T Consensus 193 ~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 193 SNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 998775532 233344456777754 333444334677777775443
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.012 Score=63.84 Aligned_cols=201 Identities=11% Similarity=-0.012 Sum_probs=125.9
Q ss_pred ccCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCee-eEEEEecCCCCCEEEEEeCCCCCeE-EEeeCCCcEEEEEcC
Q 008005 271 HSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQV-SLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVN 347 (581)
Q Consensus 271 h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~ 347 (581)
....+..++|.+... ++++-...+.|+.+++...... .....+.........|++.+.+..| ++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899988554 4445555678888888642110 1112233233456678888766544 454567889999987
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCe
Q 008005 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAA 424 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~ 424 (581)
.......+...-.....+++.|.+..|+.+.. .+.|...++++.....+..........|++.+.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 65544444444456789999998777776653 26899999987766555554445789999998777777665 4568
Q ss_pred EEEEECCCCeeeEE-ec---CCceEEEEECCCCCEEEEE-eeCCcEEEEEecCC
Q 008005 425 ILLLDREANFERWI-EE---EEVITSFSLSKDNKYLLVN-LINQEIHLWSIESD 473 (581)
Q Consensus 425 i~i~d~~~~~~~~~-~~---~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~ 473 (581)
|..+++.......+ .. -.....|++. +.+|+.+ ...+.|...|..++
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence 99999877663333 22 2234566663 3344444 44567777776555
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.82 E-value=0.0015 Score=62.43 Aligned_cols=228 Identities=13% Similarity=0.026 Sum_probs=118.0
Q ss_pred CCCeEEEee-CC-----CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCe---E
Q 008005 328 NDHQLLTCG-QE-----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRE---L 393 (581)
Q Consensus 328 ~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~---~ 393 (581)
++..++.|+ .+ ..+.+||+.+.+-...-..............++..++.|+.+ ..+.+||+.+.. .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455666666 32 368889988776433211111111111122356677777755 468999997765 4
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCe-eeEEecC--CceEEEEECCCCCEEEEEeeC---
Q 008005 394 ESWKGQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANF-ERWIEEE--EVITSFSLSKDNKYLLVNLIN--- 462 (581)
Q Consensus 394 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~--~~i~~~~~sp~~~~l~~~~~d--- 462 (581)
..............+...+++.++.|+.+ ..+.+||..+.. ....... ..-.+++. -+++.++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 172 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLN 172 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSC
T ss_pred EECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCc
Confidence 43332222222222223366677776643 468899998877 2221111 11112222 266777777654
Q ss_pred --CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCCCEE
Q 008005 463 --QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGELVLA--LAGHSGSVN 533 (581)
Q Consensus 463 --~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~ 533 (581)
..+.+||+.+. . -..+...........++ ..++.+++.|+.+ ..+.+||..+.+-... +........
T Consensus 173 ~~~~~~~~d~~~~-~-W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 248 (301)
T 2vpj_A 173 ILNSVEKYDPHTG-H-WTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248 (301)
T ss_dssp BCCCEEEEETTTT-E-EEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ccceEEEEeCCCC-c-EEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence 46888998774 2 22222111111111111 1256777777764 4689999887654332 211111122
Q ss_pred EEEEcCCCCcEEEEEECC-----CcEEEecCCccc
Q 008005 534 CVSWNPANLHMLASASDD-----RTIRIWGLDQIN 563 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~D-----g~I~iW~~~~~~ 563 (581)
.+.+ ++ .+++.|+.+ ..|.+||+.+.+
T Consensus 249 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2222 45 577777765 357788887654
No 304
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.78 E-value=0.0039 Score=59.57 Aligned_cols=226 Identities=11% Similarity=0.069 Sum_probs=120.1
Q ss_pred CEEEEEeC--CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC----CcEEEEEcCCCcEEEEEecC
Q 008005 285 KYLASSSK--DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE----EAIRRWDVNSGECLHVYEKT 358 (581)
Q Consensus 285 ~~lasgs~--dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~ 358 (581)
.+++.|+. ...+.+||..++ .+.....+......-..+.+ ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 356888888753 34333322222222222332 56777788755 56889999887654332211
Q ss_pred --CCeEEEEEEecCCCeEEEEeCC------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc---------
Q 008005 359 --GVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--------- 421 (581)
Q Consensus 359 --~~~v~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--------- 421 (581)
......+. -++..++.|+.+ ..+.+||+.+.................+..-+++.++.|+.
T Consensus 90 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccc
Confidence 11112222 266677777765 46899999887765544332222222223346666666653
Q ss_pred CCeEEEEECCCCeeeEEe-c--CCceEEEEECCCCCEEEEEeeC-----CcEEEEEecCCCceeEEEeccccceeEEEee
Q 008005 422 EAAILLLDREANFERWIE-E--EEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 422 dg~i~i~d~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
...+.+||..+..-.... . ...-.++... ++++++.|+.+ ..+.+||+.+. . -..+...........++
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN-E-WKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT-E-EEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC-c-EEECCCCCCCccceeEE
Confidence 355889999887622221 1 1111122222 56677776653 46888988774 1 22222111111111122
Q ss_pred ecCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 008005 494 FGGFEQAFIASGSED-----SQVYIWHRYTGE 520 (581)
Q Consensus 494 ~~~~~~~~l~sgs~d-----g~I~iwd~~~~~ 520 (581)
. .++.+++.|+.+ ..+.+||..+.+
T Consensus 245 ~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 245 A--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp E--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred E--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2 256777777754 468888987754
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.78 E-value=0.0047 Score=59.15 Aligned_cols=184 Identities=16% Similarity=0.272 Sum_probs=117.8
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeC----CC---EEEEEEc---CCeEEEEEC--CCCeeeE
Q 008005 370 DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD----GK---RIISICR---EAAILLLDR--EANFERW 437 (581)
Q Consensus 370 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~~ 437 (581)
....++.....+.+.+||+.+..+..... ..++.+.+-|+ |+ .+++... +++|.+|++ .+.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 34556767778899999997666655432 35777776663 22 2334443 478999966 3443222
Q ss_pred Ee-------cC-CceEEEEE--CCC-CC-EEEEEeeCCcEEEEEecCC------CceeEEEeccccceeEEEeeecCCCC
Q 008005 438 IE-------EE-EVITSFSL--SKD-NK-YLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 438 ~~-------~~-~~i~~~~~--sp~-~~-~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.. .. ..+..+|+ +|. +. ++++...+|.+..|++... .+.++.+..... ...|...+..
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~EgcvvDd~~ 191 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TEGMAADDEY 191 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EEEEEEETTT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cceEEEcCCC
Confidence 21 12 55667777 774 43 6888888999999998431 245666665443 3344446777
Q ss_pred cEEEEEeCCCcEEEEeCC-----CCceEEEec-cC-CCCEEEEEE--cCCCC-cEEEEEECCCcEEEecCC
Q 008005 500 AFIASGSEDSQVYIWHRY-----TGELVLALA-GH-SGSVNCVSW--NPANL-HMLASASDDRTIRIWGLD 560 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~-----~~~~~~~~~-~h-~~~v~~l~~--~p~~~-~~l~s~s~Dg~I~iW~~~ 560 (581)
..|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+. .+++. .+++|+-.+.++.+|+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 889999998777777754 345565553 22 346888887 45553 355555477899999996
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.76 E-value=9.4e-05 Score=79.60 Aligned_cols=236 Identities=9% Similarity=-0.041 Sum_probs=136.4
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEee-CCCcEEEEEcCC----CcEEEEEecCCCeEEEEEE
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVNS----GECLHVYEKTGVGLISCGW 367 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~ 367 (581)
.+.|+..++..... ...+. ....+..++|.+.+..|+.+. ..+.|..+++.. ......+.........+++
T Consensus 385 ~~~I~~id~~~~~~---~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY---TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCE---ECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcc---eeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 35677777764321 11122 233466889998766666554 457899999875 2221112111123445777
Q ss_pred ecCCCeEEE-EeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc--CCeEEEEECCCCeeeEE--ecCC
Q 008005 368 FLDGGGIFA-GMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR--EAAILLLDREANFERWI--EEEE 442 (581)
Q Consensus 368 ~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~--~~~~ 442 (581)
.+.+..|+. -...+.|.++++++.....+..........+++.|.+.+|+.+.. .+.|..+++.......+ ....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 654445444 445688999999877655554433346788999987666555443 26888888765543222 2234
Q ss_pred ceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEEEecc--ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC
Q 008005 443 VITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYKGH--KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
....|+|+|++..|+++ +..+.|..+++... .....+... ......+. . . .+.++++....+.|..++..+|
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~gla--v-d-~~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLA--V-F-EDKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCE--E-E-TTEEEEECSTTTCEEEEETTTE
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeE--E-E-CCEEEEEeCCCCeEEEEEccCC
Confidence 56789999976655554 44678999998753 222222111 11111121 1 1 2355566666789999998888
Q ss_pred ceEEEeccCCCCEEEEEE
Q 008005 520 ELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 520 ~~~~~~~~h~~~v~~l~~ 537 (581)
+.+..+........+|++
T Consensus 616 ~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp EEEECCCTTCSSCCCCCB
T ss_pred CceEEeecCCCCCcEEEE
Confidence 888777544334455543
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.76 E-value=0.0017 Score=61.90 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=118.9
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-----CcEEEEEcCCCc-
Q 008005 283 DGKYLASSS-KD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE- 350 (581)
Q Consensus 283 ~g~~lasgs-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~- 350 (581)
++.+++.|+ .+ ..+.+||..++ .+.....+.........+. .++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445566665 32 36888888753 3433332222222222222 256777778765 468999998876
Q ss_pred --EEEEEe--cCCCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 351 --CLHVYE--KTGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 351 --~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
-...-. ........+. .++..++.|+.+ ..+.+||+.+.................+..-+++.++.|+.
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred CeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 333221 1111112222 256667777654 36889999877655443322222222223336777777765
Q ss_pred C-----CeEEEEECCCCeeeEEe-c--CC-ceEEEEECCCCCEEEEEeeC-----CcEEEEEecCCCceeEEEeccccce
Q 008005 422 E-----AAILLLDREANFERWIE-E--EE-VITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRAR 487 (581)
Q Consensus 422 d-----g~i~i~d~~~~~~~~~~-~--~~-~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~ 487 (581)
+ ..+.+||..+..-.... . .. ....+.+ +++.++.|+.+ ..+.+||+.+. . -..+.......
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r 244 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-S-WTTVTSMTTPR 244 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEEECCCSSCC
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-c-EEECCCCCCcc
Confidence 4 46889999887722221 1 11 1122222 56777777664 46889998775 2 22222211111
Q ss_pred eEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 008005 488 FVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGE 520 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~ 520 (581)
....++. .++++++.|+.+ ..|.+||..+.+
T Consensus 245 ~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 CYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1111221 256677777765 357788877654
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.73 E-value=0.0044 Score=59.05 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=117.8
Q ss_pred CCEEEEEeCC----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC-----CcEEEEEcCCCcEEEE
Q 008005 284 GKYLASSSKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGECLHV 354 (581)
Q Consensus 284 g~~lasgs~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 354 (581)
+.+++.|+.+ ..+.+||..++ .+.....+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555543 35788888754 34333222221111122222 57777787755 3588999888764433
Q ss_pred EecC--CCeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc------
Q 008005 355 YEKT--GVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR------ 421 (581)
Q Consensus 355 ~~~~--~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------ 421 (581)
-... ......+. .++..++.|+.++ .+.+||+.+.................+..-+++.++.|+.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 2211 11112222 2566777777653 5788998887765544332222222222336666666654
Q ss_pred -CCeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeC-----CcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 422 -EAAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 422 -dg~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
...+.+||..+..-.... ....-.+++. -++++++.|+.+ ..+.+||+.+. . -..+...........+
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN-A-WRQVADMNMCRRNAGV 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT-E-EEEECCCSSCCBSCEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC-C-EeeCCCCCCccccCeE
Confidence 245889999887622221 1111112222 256777777654 46889998774 2 2222221111111111
Q ss_pred eecCCCCcEEEEEeCCC-----cEEEEeCCCCce
Q 008005 493 CFGGFEQAFIASGSEDS-----QVYIWHRYTGEL 521 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg-----~I~iwd~~~~~~ 521 (581)
+ ..++.+++.|+.++ .+.+||..+.+-
T Consensus 248 ~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 248 C--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp E--EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred E--EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 1 12567777777653 478888776643
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.72 E-value=0.0042 Score=59.19 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=117.6
Q ss_pred CCeEEEeeCC----CcEEEEEcCCCcEEEEEecCCCe-EEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeEEeecc
Q 008005 329 DHQLLTCGQE----EAIRRWDVNSGECLHVYEKTGVG-LISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKG 398 (581)
Q Consensus 329 ~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~ 398 (581)
+..++.|+.+ ..+..||+.+.+-...-...... -.+++. .++..++.|+.+ ..+.+||..+........
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 4455566543 35888898877543321111111 112222 256677777754 358899998877655543
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeC-------C
Q 008005 399 QKTLRISDMAITDDGKRIISICREA-----AILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN-------Q 463 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-------~ 463 (581)
....+....+..-++..++.|+.++ .+.+||..+..-.... ....-.+++. -+++.++.|+.+ .
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLS 173 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcccc
Confidence 3322222222334677777777553 5788998887622221 1111112222 256666666543 3
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCCCEEEEE
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGELVLA--LAGHSGSVNCVS 536 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~ 536 (581)
.+.+||+.+. . -..............++ ..++.+++.|+.+ ..+.+||..+.+-... +.........+.
T Consensus 174 ~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 174 TVECYNATTN-E-WTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CEEEEETTTT-E-EEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEEEeCCCC-c-EEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 5888888764 2 12221111111111111 1256777777764 3689999887654322 111111112222
Q ss_pred EcCCCCcEEEEEECCC-----cEEEecCCccc
Q 008005 537 WNPANLHMLASASDDR-----TIRIWGLDQIN 563 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg-----~I~iW~~~~~~ 563 (581)
+ ++ .+++.|+.++ .|.+||+.+.+
T Consensus 250 ~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 250 V--NG-LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp E--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred E--CC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence 2 45 6778877654 48889887655
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.71 E-value=0.02 Score=55.83 Aligned_cols=196 Identities=13% Similarity=0.090 Sum_probs=105.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec---CCCCCEEEEEeCCC---CCeEEEeeC-C-----C
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS---GHRKPVFTVSWSPN---DHQLLTCGQ-E-----E 339 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~---~h~~~V~~l~~sp~---~~~l~s~~~-d-----g 339 (581)
-...+.++|.|+|+++++ ..+|.|.+++ . +.......+. ........|+|+|+ +..|+.+.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~--g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-E--GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-T--TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-C--CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345679999999986555 5679999988 2 2333322222 22456889999998 555554433 2 5
Q ss_pred cEEEEEcCCCcE-----E-EEEe---cCCCeEEEEEEecCCCeEEEEeC-------------CCcEEEEeCCCC------
Q 008005 340 AIRRWDVNSGEC-----L-HVYE---KTGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDGR------ 391 (581)
Q Consensus 340 ~i~vwd~~~~~~-----~-~~~~---~~~~~v~~~~~~~~~~~l~sg~~-------------dg~i~vwd~~~~------ 391 (581)
.|..|+...+.. + ..+. ........++|.|||...++.+. .|.|.-++.++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 688888765421 1 1122 11123457999999965555332 256666666541
Q ss_pred -------eEEeeccCccccEEEEEEee-CCCEEEEEEcCCe--------EEEEECCCC---------------e--eeEE
Q 008005 392 -------ELESWKGQKTLRISDMAITD-DGKRIISICREAA--------ILLLDREAN---------------F--ERWI 438 (581)
Q Consensus 392 -------~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~--------i~i~d~~~~---------------~--~~~~ 438 (581)
....+...+ .....++|+| ++..+++-..... |.+...... . ....
T Consensus 186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 111111112 1467789999 5554444332222 333322110 0 0011
Q ss_pred ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
........++| .++..+++....+.|...++...
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 11223456666 45666665555667777777643
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.70 E-value=0.046 Score=53.51 Aligned_cols=261 Identities=9% Similarity=0.155 Sum_probs=164.7
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
+..|.|-|+.++... ..+... - -+.-.+|..+.+|.-. ..++.|+|+++...++.+.... .|.-=.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~-~rrpi~-A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP-IRRPIS-A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSC-EEEECC-C----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcc-eecccc-c----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-
Confidence 347888998875543 112222 1 2345688887777665 6789999999999988887655 45555666443
Q ss_pred eEEEEeCCCcEEEEeCCC--CeEEeecc---CccccEEEEEEeeCCCEEEEEEc-------CCeEEEEECCCCee-eEEe
Q 008005 373 GIFAGMTDKSICLWDLDG--RELESWKG---QKTLRISDMAITDDGKRIISICR-------EAAILLLDREANFE-RWIE 439 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~--~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~-~~~~ 439 (581)
.|+.. .+..|+-|++.+ .....+.. .....|..-..+++.++++..+- .|.+.+|..+.+.. ...+
T Consensus 118 ~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 196 (494)
T 1bpo_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (494)
T ss_dssp EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence 33333 356899999964 22222222 12346778888899998876542 46788999988773 3334
Q ss_pred cCCceEEEEECCCC---CEEEEEee---CCcEEEEEecCCC--------ceeEE-EeccccceeEEEeeecCCCCcEEEE
Q 008005 440 EEEVITSFSLSKDN---KYLLVNLI---NQEIHLWSIESDP--------KLVSR-YKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 440 ~~~~i~~~~~sp~~---~~l~~~~~---d~~i~iwd~~~~~--------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
|......+.+..+. ..++.+.. .+.+++.++...+ +.+.. +.......+.+.... ++....++.
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-s~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-ETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-cccCCEEEE
Confidence 44444344332211 23333333 2789999985431 11111 111122334443333 666778889
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+.-|.|++||+.++.++..-+-...+|..-+-+... .=++.....|.|.--.+++.++.
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEEEEEEECTTTHH
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceEEEEEEccccch
Confidence 9999999999999999998777667777776666554 34666778898888888776654
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.028 Score=54.87 Aligned_cols=197 Identities=11% Similarity=0.081 Sum_probs=107.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe---cCCCCCEEEEEeCCC---CCeEEEeeC----C---
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL---SGHRKPVFTVSWSPN---DHQLLTCGQ----E--- 338 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~---~~h~~~V~~l~~sp~---~~~l~s~~~----d--- 338 (581)
-...+.++|.|+|+++++ ..+|.|.+++. .+. .....+ .........|+|+|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~--~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP--SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS--SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC--CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999985554 56699998873 233 333322 122356889999997 445544433 2
Q ss_pred -CcEEEEEcCCC--c---E--E-EEEec-CCCeEEEEEEecCCCeEEEEeC-------------CCcEEEEeCCCC----
Q 008005 339 -EAIRRWDVNSG--E---C--L-HVYEK-TGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDGR---- 391 (581)
Q Consensus 339 -g~i~vwd~~~~--~---~--~-~~~~~-~~~~v~~~~~~~~~~~l~sg~~-------------dg~i~vwd~~~~---- 391 (581)
..|..|+...+ . . + ..+.. .......+.|.|||..+++.+. .|.|.-++.++.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777776644 1 1 1 11221 1123457899999976665432 245666666543
Q ss_pred ----eEEeeccCccccEEEEEEee-CCCEEEEEEcCC---eEEEEECCCC---------------e--eeEE-ecCCceE
Q 008005 392 ----ELESWKGQKTLRISDMAITD-DGKRIISICREA---AILLLDREAN---------------F--ERWI-EEEEVIT 445 (581)
Q Consensus 392 ----~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg---~i~i~d~~~~---------------~--~~~~-~~~~~i~ 445 (581)
....+...+. ....++|+| ++..+++-.... .|.+...... . .... .......
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1111111221 466899999 555444432221 2443332110 0 0111 1233467
Q ss_pred EEEEC-------CCCCEEEEEeeCCcEEEEEecCC
Q 008005 446 SFSLS-------KDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 446 ~~~~s-------p~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.++|. .+++++++....+.|...++...
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 77873 46767766666778888888753
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.62 E-value=0.0046 Score=59.06 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=118.8
Q ss_pred CeEEEeeC--CCcEEEEEcCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCC----CcEEEEeCCCCeEEeeccCcc
Q 008005 330 HQLLTCGQ--EEAIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTD----KSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 330 ~~l~s~~~--dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~ 401 (581)
.+++.|+. ...+.+||..+++-...-. ........+ ..++..++.|+.+ ..+.+||+.+...........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 3578899988876443211 111111222 2356677777754 578899998876655443332
Q ss_pred ccEEEEEEeeCCCEEEEEEcC------CeEEEEECCCCeeeEEec---CCceEEEEECCCCCEEEEEee---------CC
Q 008005 402 LRISDMAITDDGKRIISICRE------AAILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLI---------NQ 463 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~---------d~ 463 (581)
......+..-+++.++.|+.+ ..+.+||..+..-..... ...-.+++. -++++++.|+. -.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence 222222333467777777755 468999998876222211 111112222 25666666654 34
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCCCEEEEE
Q 008005 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGELVLA--LAGHSGSVNCVS 536 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~ 536 (581)
.+.+||..+. . -..+...........++. .++++++.|+.+ ..+.+||..+.+-... +........++.
T Consensus 170 ~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 170 SCEVYDPATE-T-WTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CEEEEETTTT-E-EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred eEEEeCCCCC-e-EEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 5888888775 2 222222111111111121 256677777654 3688999887653322 221112222333
Q ss_pred EcCCCCcEEEEEECC-----CcEEEecCCccc
Q 008005 537 WNPANLHMLASASDD-----RTIRIWGLDQIN 563 (581)
Q Consensus 537 ~~p~~~~~l~s~s~D-----g~I~iW~~~~~~ 563 (581)
+ ++ .+++.|+.+ ..+.+||+.+.+
T Consensus 246 ~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 246 V--GS-IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp E--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred E--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 3 45 688888754 468888887754
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.57 E-value=0.014 Score=55.95 Aligned_cols=227 Identities=9% Similarity=0.077 Sum_probs=117.2
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----C-------CcEEEEEcCCCcEEEE
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----E-------EAIRRWDVNSGECLHV 354 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----d-------g~i~vwd~~~~~~~~~ 354 (581)
+++.|+ ..+.+||..++ .+.. ..+..............++..++.|+. + ..+.+||..+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 56899998764 4443 333222222233333457778888874 1 1277889887764322
Q ss_pred EecCCCeE-EEEEEecCCCeEEEEeCC--------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc----
Q 008005 355 YEKTGVGL-ISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---- 421 (581)
Q Consensus 355 ~~~~~~~v-~~~~~~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---- 421 (581)
-....... .+++. -++..++.|+.+ ..+.+||+.+.................+...+++.++.|+.
T Consensus 83 ~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 83 PPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp CCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred CCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence 11111111 11222 256666666632 46899999887765544333222323333356667777765
Q ss_pred --CCeEEEEECCCCeeeEEe-c--CCceEEEEECCCCCEEEEEeeCC-----cEEEEEecCCCceeEEEeccccceeEEE
Q 008005 422 --EAAILLLDREANFERWIE-E--EEVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 422 --dg~i~i~d~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
-..+.+||..+..-.... . ...-.+++. -+++.++.|+.++ .+.+||+.+. . -..+...........
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN-K-WAPFEAFPQERSSLS 238 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT-E-EEEECCCSSCCBSCE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCC-e-EEECCCCCCccccee
Confidence 246899999887622211 1 111112222 2667777777654 4788888764 2 222222111111111
Q ss_pred eeecCCCCcEEEEEeCCC--------------cEEEEeCCCCceE
Q 008005 492 SCFGGFEQAFIASGSEDS--------------QVYIWHRYTGELV 522 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg--------------~I~iwd~~~~~~~ 522 (581)
++ ..++++++.|+.++ .+.+||..+.+-.
T Consensus 239 ~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 239 LV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 12 12556777776532 3677887766443
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.55 E-value=0.032 Score=54.09 Aligned_cols=185 Identities=10% Similarity=0.117 Sum_probs=104.1
Q ss_pred CCCcEEEEEcCC--CcEE-EEEec-----CCCeEEEEEEec--CCC-eEEEEeC---CCcEEEEeCC--CCeEE---eec
Q 008005 337 QEEAIRRWDVNS--GECL-HVYEK-----TGVGLISCGWFL--DGG-GIFAGMT---DKSICLWDLD--GRELE---SWK 397 (581)
Q Consensus 337 ~dg~i~vwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~sg~~---dg~i~vwd~~--~~~~~---~~~ 397 (581)
.+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|+++.. +.+|-+|+++ +.... ...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688999999873 3321 12222 124567777766 343 4555432 4567777664 33322 222
Q ss_pred cCccccEEEEEEeeCCCEEEEEE-----------------cCCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEe
Q 008005 398 GQKTLRISDMAITDDGKRIISIC-----------------REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
.......+++.+.++|...++.. ..|.|+.+|.. ........-...+.++|+||++.|+++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEEe
Confidence 23334689999999998777654 13567777764 2233344456688999999999888776
Q ss_pred e-CCcEEEEEecCCCcee--EEEeccccceeEEEeeecCC-CCcEEEEEeCC-CcEEEEeCC--CCceEEEec
Q 008005 461 I-NQEIHLWSIESDPKLV--SRYKGHKRARFVIRSCFGGF-EQAFIASGSED-SQVYIWHRY--TGELVLALA 526 (581)
Q Consensus 461 ~-d~~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~d-g~I~iwd~~--~~~~~~~~~ 526 (581)
. .+.|..|++....... +.+.. .. ...-....+ +|++.+++..+ +.|..|+.. .+..+..+.
T Consensus 240 t~~~~I~~~~~~~~g~l~~~~~~~~-~g---~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 240 LLAHKIHVYEKHANWTLTPLRVLSF-DT---LVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEC-SS---EEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCCCeEEEEEECCCCcEecCEEEeC-CC---CCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 4 6889999997432221 22311 11 111222256 47776655544 345555533 244444443
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.48 E-value=0.0093 Score=57.00 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=116.5
Q ss_pred CCCEEEEEeCC----CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----C-----CcEEEEEcCCC
Q 008005 283 DGKYLASSSKD----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----E-----EAIRRWDVNSG 349 (581)
Q Consensus 283 ~g~~lasgs~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----d-----g~i~vwd~~~~ 349 (581)
++.+++.|+.+ ..+.+||..++ .+.....+......-..+.+ ++..++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 55666666632 35888888753 34333222221111122222 5677777775 2 46889998877
Q ss_pred cEEEEEecC--CCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008005 350 ECLHVYEKT--GVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 350 ~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 422 (581)
+-...-... ......+. -++..++.|+.+ ..+.+||+.+.................+..-++..++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence 643321111 11112222 256666666643 368899998877655443322222222222366677777654
Q ss_pred -----CeEEEEECCCCeeeEEe---cCC-ceEEEEECCCCCEEEEEeeC-----CcEEEEEecCCCceeEEEecccccee
Q 008005 423 -----AAILLLDREANFERWIE---EEE-VITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 423 -----g~i~i~d~~~~~~~~~~---~~~-~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
..+.+||..+..-.... ... ....+.+ ++++++.|+.+ ..+.+||+.+. . -..+........
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~-W~~~~~~p~~r~ 254 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-T-WTFVAPMKHRRS 254 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-E-EEECCCCSSCCB
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-c-EEECCCCCCCcc
Confidence 46889998887622111 111 1122222 66777777654 56889998774 2 222221111111
Q ss_pred EEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 008005 489 VIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGE 520 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~ 520 (581)
...++. .++++++.|+.+ ..+.+||..+.+
T Consensus 255 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 255 ALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111111 256677777654 356777776654
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.47 E-value=0.0007 Score=72.82 Aligned_cols=200 Identities=12% Similarity=-0.018 Sum_probs=116.7
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEEcccCCe-eeEEEEecCCCCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCC
Q 008005 273 DEVWFLQFSHDGKYLASS-SKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasg-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~ 349 (581)
..+..++|.+.+..|..+ ...+.|..+++..... ......+.........|++.+. +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898866655554 3557888888864100 0011111111223456788754 445555556788999998765
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEE
Q 008005 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAIL 426 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~ 426 (581)
.....+.........+++.|.+..|+.+.. .+.|..+++++.....+........+.|++++++..|+.+. ..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544433333345567888887666665543 26888888876444333322233577899998866665554 567899
Q ss_pred EEECCCCeeeEEec----CCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 427 LLDREANFERWIEE----EEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 427 i~d~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.+++.......+.. ......+++..+ .++++....+.|..++..++
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 99987654332221 123445565443 34444445678888887654
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.46 E-value=0.0075 Score=57.67 Aligned_cols=225 Identities=11% Similarity=0.058 Sum_probs=117.3
Q ss_pred CCCeEEEeeCC----CcEEEEEcCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeC----C-----CcEEEEeCCCCe
Q 008005 328 NDHQLLTCGQE----EAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMT----D-----KSICLWDLDGRE 392 (581)
Q Consensus 328 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~----d-----g~i~vwd~~~~~ 392 (581)
++..++.||.+ ..+.+||..+.+-...-... .... +++. .++..++.|+. + ..+.+||+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 55666766642 36888998877643321111 1111 2222 25666666665 2 468899998877
Q ss_pred EEeeccCccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCeeeEE-e--cC-CceEEEEECCCCCEEEEEeeC-
Q 008005 393 LESWKGQKTLRISDMAITDDGKRIISICRE-----AAILLLDREANFERWI-E--EE-EVITSFSLSKDNKYLLVNLIN- 462 (581)
Q Consensus 393 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~--~~-~~i~~~~~sp~~~~l~~~~~d- 462 (581)
..........+....+..-+++.++.|+.+ ..+.+||..+..-... . .. .....+.+ ++++++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 655543322222222223366666766543 4688999888762221 1 11 11122222 56677777654
Q ss_pred ----CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCCC
Q 008005 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGELVLA--LAGHSGS 531 (581)
Q Consensus 463 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~ 531 (581)
..+.+||+.+. . -..............++. .++.+++.|+.+ ..+.+||..+.+-... +......
T Consensus 180 ~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 180 TNRLNSAECYYPERN-E-WRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SCBCCCEEEEETTTT-E-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCcCceEEEEeCCCC-e-EeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 45888888764 2 122211111111111222 256777777764 4699999887654322 1111111
Q ss_pred EEEEEEcCCCCcEEEEEECC-----CcEEEecCCccc
Q 008005 532 VNCVSWNPANLHMLASASDD-----RTIRIWGLDQIN 563 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~D-----g~I~iW~~~~~~ 563 (581)
...+.+ ++ .+++.|+.+ ..|.+||+.+.+
T Consensus 256 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 256 LGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCE
Confidence 122222 44 677777754 357788887654
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.45 E-value=0.14 Score=58.06 Aligned_cols=214 Identities=11% Similarity=0.071 Sum_probs=126.7
Q ss_pred cEEEEEcCCCcEEEEEecC-CCeEEEEEEec---C-CCeEEEEe----------CCCcEEEEeCCCCeEEeecc-Ccccc
Q 008005 340 AIRRWDVNSGECLHVYEKT-GVGLISCGWFL---D-GGGIFAGM----------TDKSICLWDLDGRELESWKG-QKTLR 403 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~---~-~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~-~~~~~ 403 (581)
.|++.|..+.+.+..+.-. ...+.+++... + ..++++|+ ..|.|.+|++..+++..... ...+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 4677777777766665533 33445554322 2 46788776 35789999987555443322 22346
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeE-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANF-ERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
+++++-- +| +|+++ ....|++|++.... ... ...-..+..+.....++++++|..-..|.++..+.....+..+.
T Consensus 888 v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 7777644 34 44443 45789999998654 221 11111233333333578999998888888877665545556666
Q ss_pred ccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--------ceEEEeccC-CCCEEEEE---EcCCC--------
Q 008005 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------ELVLALAGH-SGSVNCVS---WNPAN-------- 541 (581)
Q Consensus 482 ~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~h-~~~v~~l~---~~p~~-------- 541 (581)
....+.+...+.+.. ...++.+..+|.|.++..... ++...-.-| ...|+++. +.+.+
T Consensus 965 ~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~ 1042 (1158)
T 3ei3_A 965 RDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPT 1042 (1158)
T ss_dssp ECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CE
T ss_pred eecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccc
Confidence 565666666555543 347788999999999875431 122221222 34577765 33322
Q ss_pred CcEEEEEECCCcEEEec
Q 008005 542 LHMLASASDDRTIRIWG 558 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~ 558 (581)
...++-++.+|.|-+.-
T Consensus 1043 ~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1043 QGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEEETTSCEEEEE
T ss_pred cceEEEEecCCEEEEEE
Confidence 23577888999987754
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.41 E-value=0.056 Score=52.64 Aligned_cols=234 Identities=12% Similarity=0.148 Sum_probs=125.1
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEE-------ecCCCeEEEEEEecC---CCeEEEEeC--------C
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY-------EKTGVGLISCGWFLD---GGGIFAGMT--------D 380 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~sg~~--------d 380 (581)
....|+|.|+|+.|+++...|.|++++.. +.....+ .........++++|+ +..|+.... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36799999999834455667999999853 3321111 112345689999996 556665532 2
Q ss_pred CcEEEEeCCCC--e---EEee---cc---CccccEEEEEEeeCCCEEEEEEc-------------CCeEEEEECCCC---
Q 008005 381 KSICLWDLDGR--E---LESW---KG---QKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN--- 433 (581)
Q Consensus 381 g~i~vwd~~~~--~---~~~~---~~---~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--- 433 (581)
..|..|++... . .... .. ........++|.|||...++.+. .|.|.-++....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666432 1 1111 11 11123567999999965555433 256777777653
Q ss_pred ----------e-eeEEecCCceEEEEECCCCCEEEEEeeCC--cEEEEEecCCC--------------------------
Q 008005 434 ----------F-ERWIEEEEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESDP-------------------------- 474 (581)
Q Consensus 434 ----------~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~-------------------------- 474 (581)
. ..+.........++|+|+...|.++.... .=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 1 22223334578899999433444443321 11121111110
Q ss_pred ----ceeEEEeccccceeEEEeeecC------CCCcEEEEEeCCCcEEEEeCCCCceEEE---eccCCCCEEEEEEcCCC
Q 008005 475 ----KLVSRYKGHKRARFVIRSCFGG------FEQAFIASGSEDSQVYIWHRYTGELVLA---LAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 475 ----~~~~~~~~~~~~~~~i~~~~~~------~~~~~l~sgs~dg~I~iwd~~~~~~~~~---~~~h~~~v~~l~~~p~~ 541 (581)
.++..+..+.. .....+.. .++.++++.-..+.|...++..++.... +......+..+++.|+|
T Consensus 258 ~~~~~P~~~~~~~~a---p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 258 AGTEQPVFYWKDSPA---VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp TTSCCCSEEESSCCC---EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCccCCeEEeCCCcC---cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111111111 11122211 3577777777778888888776544322 22233579999999999
Q ss_pred CcEEEEEE-CCCcEEEecC
Q 008005 542 LHMLASAS-DDRTIRIWGL 559 (581)
Q Consensus 542 ~~~l~s~s-~Dg~I~iW~~ 559 (581)
.++++.. .+| +||.+
T Consensus 335 -~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 335 -YLYVLTDESSG--ELLKV 350 (353)
T ss_dssp -CEEEEECSTTE--EEEEE
T ss_pred -cEEEEEeCCCC--EEEEE
Confidence 4555432 334 45544
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.40 E-value=0.22 Score=54.04 Aligned_cols=265 Identities=10% Similarity=0.088 Sum_probs=151.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe-cCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
...|.+|.-..+|. |-.|+.+| +..||-. .+...... ......|.++.-..++ .|..++.+| +..||..+.+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~---~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGY---STQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSS---CEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCC---ceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 46799999888875 44556677 5566632 11111000 1123468888777666 455566555 7899988765
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeec----cCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008005 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK----GQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
...........|.++.. .+ ..|..++.+ .+..+|..+.....+. ......|.++....++...+ ++. +-+.
T Consensus 94 f~~~~~~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~ 168 (758)
T 3ott_A 94 YEQPETDFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLC 168 (758)
T ss_dssp ECCCSCCCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEE
T ss_pred EECcccCCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHh
Confidence 32211112234666543 34 467777766 6888998776665441 12234688888887776555 444 4577
Q ss_pred EEECCCCeeeEEec-------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCC
Q 008005 427 LLDREANFERWIEE-------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 427 i~d~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.++..+........ ...|.++...+++..|.+++. +.+..+|..+. . ...+.... ...+..++...+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l~--~~~i~~i~~d~~g 243 (758)
T 3ott_A 169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAFH--NNSIKSLALDGNG 243 (758)
T ss_dssp EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-E-EEEEEEEE--EEEEEEEEECTTC
T ss_pred hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-e-EEeccCCC--CCeEEEEEEcCCC
Confidence 88887765322211 224788888887776666764 46888887664 2 22222111 1224444435555
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEec-------cCCCCEEEEEEcCCCCcEEEEEECCCcEEEec
Q 008005 500 AFIASGSEDSQVYIWHRYTGELVLALA-------GHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+. .|+.+ -+.+++..+++...... -....|.++....+| . |-.|+..| +.++.
T Consensus 244 ~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 244 DLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLSR 304 (758)
T ss_dssp CEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEEC
T ss_pred CEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-ccccc
Confidence 544 45544 58889877665432211 123468999888877 3 44455556 54443
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.36 E-value=0.022 Score=54.49 Aligned_cols=223 Identities=9% Similarity=-0.033 Sum_probs=115.4
Q ss_pred eEEEeeCCCcEEEEEcCCCcEEE-EEecCCCeEEEEEEecCCCeEEEEeC-----C------CcEEEEeCCCCeEEeecc
Q 008005 331 QLLTCGQEEAIRRWDVNSGECLH-VYEKTGVGLISCGWFLDGGGIFAGMT-----D------KSICLWDLDGRELESWKG 398 (581)
Q Consensus 331 ~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~-----d------g~i~vwd~~~~~~~~~~~ 398 (581)
+++.|+ ..+.+||..+++-.. .+..............++..++.|+. . ..+..||..+........
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 579999999887543 11111112222333457777777773 1 127888998877655443
Q ss_pred CccccEEEEEEeeCCCEEEEEEcC--------CeEEEEECCCCeeeEE-e--cCCceEEEEECCCCCEEEEEee-C----
Q 008005 399 QKTLRISDMAITDDGKRIISICRE--------AAILLLDREANFERWI-E--EEEVITSFSLSKDNKYLLVNLI-N---- 462 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~-~--~~~~i~~~~~sp~~~~l~~~~~-d---- 462 (581)
....+....+..-++..++.|+.+ ..+.+||..+..-... . ....-.+++. -+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCB
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcc
Confidence 332222222223356666666632 4688999988762211 1 1111112222 35667777765 2
Q ss_pred -CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC-----cEEEEeCCCCceEEEe--ccCCCCEEE
Q 008005 463 -QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QVYIWHRYTGELVLAL--AGHSGSVNC 534 (581)
Q Consensus 463 -~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~--~~h~~~v~~ 534 (581)
..+.+||..+. . -..............++ ..++++++.|+.++ .+.+||..+.+-...- .........
T Consensus 164 ~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 164 LNKMCVYDPKKF-E-WKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CCCEEEEETTTT-E-EEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cceEEEEeCCCC-e-EEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 46888998764 1 12222111111111111 12567777777654 5889998876543322 111111222
Q ss_pred EEEcCCCCcEEEEEECCC--------------cEEEecCCccc
Q 008005 535 VSWNPANLHMLASASDDR--------------TIRIWGLDQIN 563 (581)
Q Consensus 535 l~~~p~~~~~l~s~s~Dg--------------~I~iW~~~~~~ 563 (581)
+.+ ++ .+++.|+.++ .|.+||+.+.+
T Consensus 240 ~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 240 VSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 222 44 6777777642 36778887654
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.30 E-value=0.096 Score=50.97 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=79.9
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeee-EEE----EecCCCCCEEEEEeCCC---CCeEEEee-C----
Q 008005 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVS-LKH----RLSGHRKPVFTVSWSPN---DHQLLTCG-Q---- 337 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~-~~~----~~~~h~~~V~~l~~sp~---~~~l~s~~-~---- 337 (581)
-...+.|+|.|+|+ +++ +...|.|++++.. +... .+. ...........|+|+|+ +..|..+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 34568999999999 554 4567999988753 2211 111 11122346789999995 44444442 2
Q ss_pred ---CCcEEEEEcCCC--c--EEE-EEec------CCCeEEEEEEecCCCeEEEEeC-------------CCcEEEEeCCC
Q 008005 338 ---EEAIRRWDVNSG--E--CLH-VYEK------TGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDLDG 390 (581)
Q Consensus 338 ---dg~i~vwd~~~~--~--~~~-~~~~------~~~~v~~~~~~~~~~~l~sg~~-------------dg~i~vwd~~~ 390 (581)
...|..|++..+ . ... .+.. .......+.|.|||...++.+. .|.|.-++.++
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 1 111 1211 1122357999999955554332 24677777764
Q ss_pred C-------------eEEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008005 391 R-------------ELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 391 ~-------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
. ....+...+ .....++|.|+...|.++..
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence 3 111122222 25788999994445555443
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.21 E-value=0.046 Score=52.35 Aligned_cols=228 Identities=11% Similarity=0.117 Sum_probs=113.5
Q ss_pred EEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeC----CC-------cEEEEEcCCCcEEEE
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----EE-------AIRRWDVNSGECLHV 354 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~ 354 (581)
+++.|+. .+..||..++ ++.. .................++..++.|+. ++ .+.+||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~-~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMEN-ECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTT-EEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCC-ceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 3788888754 3433 222211112222233456777888873 12 177888887764332
Q ss_pred EecCCC-eEEEEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEc-----
Q 008005 355 YEKTGV-GLISCGWFLDGGGIFAGMTD-------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR----- 421 (581)
Q Consensus 355 ~~~~~~-~v~~~~~~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~----- 421 (581)
-..... .-.+++. -++..++.|+.+ ..+.+||+.+.................+...+++.++.|+.
T Consensus 94 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 94 PPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp SCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred CCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence 111111 1112222 256677777754 35888999887766554332222222233356667677664
Q ss_pred -CCeEEEEECCCCeeeEEe---cCCceEEEEECCCCCEEEEEeeC-----CcEEEEEecCCCceeEEEeccccceeEEEe
Q 008005 422 -EAAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 422 -dg~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
...+.+||..+..-.... ....-.+++. -+++.++.|+.+ ..+.+||+.+. . -..+...........+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~ 249 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN-K-WEVMTEFPQERSSISL 249 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC-C-EEECCCCSSCCBSCEE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC-e-EEECCCCCCcccceEE
Confidence 246899999887622221 1111112222 256777777653 35678888764 2 1222211111111111
Q ss_pred eecCCCCcEEEEEeCC--------------CcEEEEeCCCCceEE
Q 008005 493 CFGGFEQAFIASGSED--------------SQVYIWHRYTGELVL 523 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~d--------------g~I~iwd~~~~~~~~ 523 (581)
+ ..++.+++.|+.+ ..+.+||..+.+-..
T Consensus 250 ~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 250 V--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp E--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred E--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 1 2245666776653 357788877665433
No 325
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.20 E-value=0.00022 Score=51.99 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHHHHHHHHHcCChHHHHHH
Q 008005 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIIT 117 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~ 117 (581)
.++|+.+=|++||..+||.+++.+|.+|.+++.+++... =-..++.-+|..++.+
T Consensus 9 Q~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~-ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 9 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK-KYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH-HHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhh-hhhhhhhhhHHHHHHH
Confidence 367999999999999999999999999999998744333 2345677788765553
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.10 E-value=0.037 Score=62.36 Aligned_cols=261 Identities=8% Similarity=0.126 Sum_probs=150.6
Q ss_pred CCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCC
Q 008005 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
...|.|-|+..+... .+.-.. --+...+|..+.+|.-. ..++.|+|+++...++.+.... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~--~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP--IRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCc--cccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-
Confidence 347888888765432 111111 12334577777666654 6789999999988877776544 45555666443
Q ss_pred eEEEEeCCCcEEEEeCCCC-eEEeeccCc----cccEEEEEEeeCCCEEEEEEc-------CCeEEEEECCCCe-eeEEe
Q 008005 373 GIFAGMTDKSICLWDLDGR-ELESWKGQK----TLRISDMAITDDGKRIISICR-------EAAILLLDREANF-ERWIE 439 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~-~~~~~~~~~----~~~i~~i~~~~~~~~l~~~~~-------dg~i~i~d~~~~~-~~~~~ 439 (581)
.|+.. .+..|+.|++.+. .+......+ ...|..-..+++.++++..+- .|.+.+|..+.+. ....+
T Consensus 118 ~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg 196 (1630)
T 1xi4_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (1630)
T ss_pred eeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence 33333 3467999999642 222222211 346777888899998876553 4788899888766 22333
Q ss_pred cCCceEEEEEC--CC-CCEEEEEee---CCcEEEEEecCCC--c-e-----eEEE-eccccceeEEEeeecCCCCcEEEE
Q 008005 440 EEEVITSFSLS--KD-NKYLLVNLI---NQEIHLWSIESDP--K-L-----VSRY-KGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 440 ~~~~i~~~~~s--p~-~~~l~~~~~---d~~i~iwd~~~~~--~-~-----~~~~-~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
|......+... +. ...++.+.. .+.++|.++...+ . . +..+ .......+.+... .++...+++.
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~-vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE-eccccCEEEE
Confidence 33333333221 11 222222222 3688888885430 1 1 1111 1111122333322 2666678888
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCccccc
Q 008005 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+.-|.|++||+.+|.++..-+-...+|...+-+... .=++.....|.|.--.++..++.
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~-~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCCCC-CceEEEcCCceEEEEEEccchhh
Confidence 9999999999999999876555445556555544333 23455557777777666665544
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.10 E-value=0.073 Score=50.91 Aligned_cols=223 Identities=13% Similarity=0.027 Sum_probs=112.9
Q ss_pred eEEEeeCCCcEEEEEcCCCcEEEE-EecCCCeEEEEEEecCCCeEEEEeC----CC-------cEEEEeCCCCeEEeecc
Q 008005 331 QLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMT----DK-------SICLWDLDGRELESWKG 398 (581)
Q Consensus 331 ~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~~~~ 398 (581)
.++.|+. .+..||..+++-... ...............++..++.|+. ++ .+..||..+........
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4445553 488999988875442 1111111222233456777777773 12 27788988877655543
Q ss_pred CccccEEEEEEeeCCCEEEEEEcC-------CeEEEEECCCCeeeEEe-cCCc--eEEEEECCCCCEEEEEee------C
Q 008005 399 QKTLRISDMAITDDGKRIISICRE-------AAILLLDREANFERWIE-EEEV--ITSFSLSKDNKYLLVNLI------N 462 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~-~~~~--i~~~~~sp~~~~l~~~~~------d 462 (581)
....+....+..-++..++.|+.+ ..+.+||..+..-.... .... -.+++. .+++.++.|+. -
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCcc
Confidence 222222222222366777777754 35888998887622221 1111 112222 36667777664 2
Q ss_pred CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCC-----CcEEEEeCCCCceEEE--eccCCCCEEEE
Q 008005 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTGELVLA--LAGHSGSVNCV 535 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l 535 (581)
..+.+||..+. . -..............++. .++.+++.|+.+ ..+.+||..+.+-... +.........+
T Consensus 175 ~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 175 NRVFIYNPKKG-D-WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV 250 (318)
T ss_dssp CCEEEEETTTT-E-EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE
T ss_pred ceEEEEcCCCC-E-EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE
Confidence 35889998775 2 222221111111111111 256677777654 3577899877654322 22111111222
Q ss_pred EEcCCCCcEEEEEECC--------------CcEEEecCCccc
Q 008005 536 SWNPANLHMLASASDD--------------RTIRIWGLDQIN 563 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~D--------------g~I~iW~~~~~~ 563 (581)
.+ ++ .+++.||.+ ..+.+||+.+.+
T Consensus 251 ~~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 251 SL--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EE--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EE--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 22 34 577777654 357778887654
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.08 E-value=0.034 Score=54.23 Aligned_cols=235 Identities=9% Similarity=0.081 Sum_probs=114.6
Q ss_pred CCCEEEEEeCC-CeEEEEEccc-CCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEeeC-C---------CcEEEEEcCCC
Q 008005 283 DGKYLASSSKD-QSAIIWEVKE-DGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQ-E---------EAIRRWDVNSG 349 (581)
Q Consensus 283 ~g~~lasgs~d-g~i~iwd~~~-~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~-d---------g~i~vwd~~~~ 349 (581)
++.+++.|+.+ ..+.++|... ...+.....+. .....-.++.+ ++.+++.||. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66666777643 4688888763 24454443333 11112222222 5677777776 2 46899999887
Q ss_pred cEEEEEecC---CCeEEEEEEecCCCeEEEEeCC---------------------------------------CcEEEEe
Q 008005 350 ECLHVYEKT---GVGLISCGWFLDGGGIFAGMTD---------------------------------------KSICLWD 387 (581)
Q Consensus 350 ~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~d---------------------------------------g~i~vwd 387 (581)
+-...-... .....++. .++..++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 643322111 11122222 467777778754 4789999
Q ss_pred CCCCeEEeeccCccccEE-EEEEeeCCCEEEEEEc------CCeEEEEEC--CCCeeeEE-ec--CC-ceEEEEECCCCC
Q 008005 388 LDGRELESWKGQKTLRIS-DMAITDDGKRIISICR------EAAILLLDR--EANFERWI-EE--EE-VITSFSLSKDNK 454 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~------dg~i~i~d~--~~~~~~~~-~~--~~-~i~~~~~sp~~~ 454 (581)
+.+............... ..+..-+++.++.|+. ...+..||+ .+..-... .. .. .....+...+++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 254 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDS 254 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTE
T ss_pred CCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCE
Confidence 988765544332211111 1222235566666653 346777887 44431111 11 11 111112223566
Q ss_pred EEEEEeeC----------------------CcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCC---
Q 008005 455 YLLVNLIN----------------------QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--- 509 (581)
Q Consensus 455 ~l~~~~~d----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg--- 509 (581)
+++.|+.+ ..+.+||+.+. .-. .+...........++ ..++++++.|+.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~-~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWD-KSGELSQGRAYGVSL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CE-EEEECSSCCBSSEEE--EETTEEEEEEEECGGGC
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-cee-eCCCCCCCcccceeE--EeCCEEEEEeeeCCCCC
Confidence 77777642 25778888764 211 111111111111111 23567777777543
Q ss_pred ---cEEEEeCCCCceEEEe
Q 008005 510 ---QVYIWHRYTGELVLAL 525 (581)
Q Consensus 510 ---~I~iwd~~~~~~~~~~ 525 (581)
.|.++++++++.+...
T Consensus 331 ~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC
T ss_pred EeeeEEEEEEcCcEeEeee
Confidence 3556677777665443
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.00 E-value=0.022 Score=55.58 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=115.0
Q ss_pred CCCeEEEeeCC-CcEEEEEcCC--CcEEEEEecC--CCeEEEEEEecCCCeEEEEeC-C---------CcEEEEeCCCCe
Q 008005 328 NDHQLLTCGQE-EAIRRWDVNS--GECLHVYEKT--GVGLISCGWFLDGGGIFAGMT-D---------KSICLWDLDGRE 392 (581)
Q Consensus 328 ~~~~l~s~~~d-g~i~vwd~~~--~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~-d---------g~i~vwd~~~~~ 392 (581)
++..++.|+.+ ..+.+||+.+ .+-...-... ...-.+++. -++..++.|+. + ..+.+||+.+..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 56666666643 4688888864 3322111111 111112222 25666666665 2 468899998877
Q ss_pred EEeeccCc-cccEEEEEEeeCCCEEEEEEcC---------------------------------------CeEEEEECCC
Q 008005 393 LESWKGQK-TLRISDMAITDDGKRIISICRE---------------------------------------AAILLLDREA 432 (581)
Q Consensus 393 ~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~~~ 432 (581)
........ .......+...+++.++.|+.+ ..+.+||..+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 177 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence 65554332 2222222233677777777754 5799999988
Q ss_pred Ce-eeEEecC--Cce-EEEEECCCCCEEEEEee------CCcEEEEEecCCCceeEEEeccccc--eeEEEeeecCCCCc
Q 008005 433 NF-ERWIEEE--EVI-TSFSLSKDNKYLLVNLI------NQEIHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQA 500 (581)
Q Consensus 433 ~~-~~~~~~~--~~i-~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~ 500 (581)
.. ....... ... .+++.. ++++++.|+. ...+..||+......-..+...... .....++ ..++.
T Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~ 254 (357)
T 2uvk_A 178 QQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG--ISNDS 254 (357)
T ss_dssp TEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE--EETTE
T ss_pred CcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE--EECCE
Confidence 77 2222111 111 223332 5666666654 3457778762221222222211111 1111111 23566
Q ss_pred EEEEEeCC----------------------CcEEEEeCCCCc--eEEEeccCCCCEEEEEEcCCCCcEEEEEECCC----
Q 008005 501 FIASGSED----------------------SQVYIWHRYTGE--LVLALAGHSGSVNCVSWNPANLHMLASASDDR---- 552 (581)
Q Consensus 501 ~l~sgs~d----------------------g~I~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg---- 552 (581)
+++.|+.+ ..+.+||..+.+ .+..+......-.++. .++ ++++.||.++
T Consensus 255 iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~-~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 255 LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNN-SLLIIGGETAGGKA 331 (357)
T ss_dssp EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETT-EEEEEEEECGGGCE
T ss_pred EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCC-EEEEEeeeCCCCCE
Confidence 77777632 257889987654 3333332222222232 345 6888888653
Q ss_pred --cEEEecCCcccccccc
Q 008005 553 --TIRIWGLDQINMKHRD 568 (581)
Q Consensus 553 --~I~iW~~~~~~~~~~~ 568 (581)
.|.++++++.+.....
T Consensus 332 ~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEC-CCSCEEEC
T ss_pred eeeEEEEEEcCcEeEeee
Confidence 3556688877765543
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.00 E-value=0.28 Score=47.41 Aligned_cols=190 Identities=12% Similarity=0.065 Sum_probs=113.1
Q ss_pred EEEEEcCCCCEEEEEe------------CCCeEEEEEcccC-CeeeEEEEecC-----CCCCEEEEEeCC--CCC-eEEE
Q 008005 276 WFLQFSHDGKYLASSS------------KDQSAIIWEVKED-GQVSLKHRLSG-----HRKPVFTVSWSP--NDH-QLLT 334 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs------------~dg~i~iwd~~~~-~~~~~~~~~~~-----h~~~V~~l~~sp--~~~-~l~s 334 (581)
-.++..|+|..+++++ .+|.|.++|..+. .+...+. +.+ ..-....+.+.+ ++. +|++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3556788876555542 6899999998732 2222222 222 223566777755 343 4544
Q ss_pred ee-C--CCcEEEEEcCCC-cE---EEEEecC-CCeEEEEEEecCCCeEEEEe-----------------CCCcEEEEeCC
Q 008005 335 CG-Q--EEAIRRWDVNSG-EC---LHVYEKT-GVGLISCGWFLDGGGIFAGM-----------------TDKSICLWDLD 389 (581)
Q Consensus 335 ~~-~--dg~i~vwd~~~~-~~---~~~~~~~-~~~v~~~~~~~~~~~l~sg~-----------------~dg~i~vwd~~ 389 (581)
+. . +.+|.+|++..+ .. +..+.+. -...+.+.+.++|...++.. ..|.|+.+|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 43 2 467888877653 22 2233322 34578899999987666643 12456666653
Q ss_pred CCeEEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCC-Ce---eeEEecCCceEEEEECC-CCCEEEEEeeC-
Q 008005 390 GRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA-NF---ERWIEEEEVITSFSLSK-DNKYLLVNLIN- 462 (581)
Q Consensus 390 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d- 462 (581)
+....... -...+.++|+||++.++.+. ..+.|..|++.. +. ............+++++ +|++.+++..+
T Consensus 212 --~~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 --DVRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp --CCEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred --eEEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCc
Confidence 33222221 23578999999999887775 578999999863 22 22334466788899999 59877766533
Q ss_pred CcEEEEE
Q 008005 463 QEIHLWS 469 (581)
Q Consensus 463 ~~i~iwd 469 (581)
+.|..|+
T Consensus 289 ~~v~~~~ 295 (355)
T 3sre_A 289 MRIFFYD 295 (355)
T ss_dssp HHHHSCC
T ss_pred eEEEEEC
Confidence 3444444
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.87 E-value=0.31 Score=46.02 Aligned_cols=245 Identities=9% Similarity=0.011 Sum_probs=131.2
Q ss_pred cCCCCEEEEEe--CCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCC--------------CcEEEE
Q 008005 281 SHDGKYLASSS--KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------------EAIRRW 344 (581)
Q Consensus 281 s~~g~~lasgs--~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--------------g~i~vw 344 (581)
+.+|.+|.... .++.+...+.+... ...+. .. .+--+++++.+|+-+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~---~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLS---ND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEE---EE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEcc---CC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 35666666654 24545544544222 22221 11 133456788888777543 357777
Q ss_pred EcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe----CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEE
Q 008005 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM----TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 420 (581)
++..++... +.... +..|+++++.|+-.. .+..|+..++++.....+.... + .+++++++.|+-.+
T Consensus 94 ~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~---~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 94 KRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY---L--FTCNTSDRYFYYNN 163 (302)
T ss_dssp ETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC---C--CCSEEETTEEEEEC
T ss_pred eCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC---c--eEeeEECCEEEEEe
Confidence 777665333 22221 236778888888776 3456777777765544444332 1 35678888888766
Q ss_pred c-CCeEEEEECCCCeeeEEecCCceEEEEECCCCCEEEEEeeCC--cEEEEEecCCCceeEEEeccccceeEEEeeecCC
Q 008005 421 R-EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 421 ~-dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
. ...|...++.......+.. +... ..++|++.+|+-....+ .|..-++... ....+.... + .++.|
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~--~~~~Lt~~~-----~--~~~~~ 232 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP--NPVVLTEAN-----I--EHYNV 232 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC--CCEECSCSC-----E--EEEEE
T ss_pred CCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC--CeEEEeCCC-----c--ceEEE
Confidence 5 6789999988776444322 2222 34568999888776543 4555555553 233333221 1 11366
Q ss_pred CCcEEEEEe--CCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecC
Q 008005 498 EQAFIASGS--EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 498 ~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
++..|+-++ ..+.|..-++.-... ..+.. +.+..+. +.+..+..+--..+.|..-++
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~--~~~~~i~--i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGTGF-KELAK--GEFCNIN--VTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSCCC-EEEEE--SCEEEEE--ECSSEEEEEETTTCCEEEEES
T ss_pred CCCEEEEEECCCCcEEEEEECCCCcc-EEeeC--CccceEE--EeCCEEEEEECCCCeEEEEEC
Confidence 777776543 235666666643332 33321 1244443 344234444434455444343
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.78 E-value=0.36 Score=45.42 Aligned_cols=227 Identities=11% Similarity=0.169 Sum_probs=137.6
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-CcEEEEEe
Q 008005 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVYE 356 (581)
Q Consensus 278 l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~ 356 (581)
.-.+|..+.+|.-. ..++.|+|+++..++ +...- ...|..=.|-.+. .|+-.+ +..|.-|+++. ..+.+.+.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~kl---ks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhh---cceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeee
Confidence 44688888887765 678999999876333 33332 4578888887544 444444 34799999974 45667776
Q ss_pred cC----CCeEEEEEEecCCCeEEEEeC-------CCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCC-----EEEEEE
Q 008005 357 KT----GVGLISCGWFLDGGGIFAGMT-------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-----RIISIC 420 (581)
Q Consensus 357 ~~----~~~v~~~~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~ 420 (581)
.| ...|..-..+++.++++..+- .|.+.+|..+.+.......+. ... ..+-.+|+ .++.+.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha-a~F--~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASF--AQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE-EEE--EEECCTTCSSCEEEEEEEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeee-eee--EEEecCCCCCCceEEEEEE
Confidence 65 456777777888888665432 367889998766554443332 111 22222222 233333
Q ss_pred c---CCeEEEEECCCC---e----ee----EEe---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008005 421 R---EAAILLLDREAN---F----ER----WIE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 421 ~---dg~i~i~d~~~~---~----~~----~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
. .+.+++.++... . .+ +.. ..+-..++..++.-..++.-+.-|.|++||+.++ .++..-.-.
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-t~i~~nrIS 300 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRIS 300 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECC
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-cEEEEeccC
Confidence 2 258999988543 1 11 111 2445678888888889999999999999999998 555544444
Q ss_pred ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
...++.. +. .....-+++....|.|.--.++.
T Consensus 301 ~d~iF~t--a~-~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 301 GETIFVT--AP-HEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp SSCEEEE--EE-EGGGTEEEEEETTCEEEEEEECT
T ss_pred CCceEEe--cc-cCCCCcEEEEcCCCEEEEEEECc
Confidence 4443322 11 12222344444556555444443
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.78 E-value=0.54 Score=47.34 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE--Eec------CCCeEEEEEEecC---CCeEEEEeC-------
Q 008005 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEK------TGVGLISCGWFLD---GGGIFAGMT------- 379 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~------~~~~v~~~~~~~~---~~~l~sg~~------- 379 (581)
...+.|+|.|+|+++++-...+.|++++..+++.... +.. .......++|+|+ +..|++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3467999999998777654445788887665654322 211 2456779999996 666665543
Q ss_pred ------CCcEEEEeCCC--CeE------Ee-eccCccccEEEEEEeeCCCEEEEEEc-----------------------
Q 008005 380 ------DKSICLWDLDG--REL------ES-WKGQKTLRISDMAITDDGKRIISICR----------------------- 421 (581)
Q Consensus 380 ------dg~i~vwd~~~--~~~------~~-~~~~~~~~i~~i~~~~~~~~l~~~~~----------------------- 421 (581)
...|.-|+... ..+ .. +..........++|.|||...++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 23566665532 111 11 11112235789999999987777553
Q ss_pred ---------CCeEEEEECCCC-----------e-eeEEecCCceEEEEECCCCCEEEEE
Q 008005 422 ---------EAAILLLDREAN-----------F-ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 422 ---------dg~i~i~d~~~~-----------~-~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
.|.|.-++.... . ..+.........++|+|++.++++-
T Consensus 187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEE
T ss_pred ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEe
Confidence 145655565543 1 2222233457889999987765553
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.054 Score=51.96 Aligned_cols=192 Identities=7% Similarity=-0.067 Sum_probs=103.6
Q ss_pred CeEEEeeCCCcEEEEEcCCCcEEEEEecC-CCeEEEEEEe--cCCCeEEEE--eCCCcEEEEeCCCCeEEeeccCc----
Q 008005 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWF--LDGGGIFAG--MTDKSICLWDLDGRELESWKGQK---- 400 (581)
Q Consensus 330 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~---- 400 (581)
..++.++.||.|.-.|..+|+....++.. ..++....-. +.+..++.+ +.||.|..++..++.........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999988765 1222221100 112244444 58999999998776433211110
Q ss_pred cccEEE---EEE-----eeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceE---------EEEEC-----CCCCEEEE
Q 008005 401 TLRISD---MAI-----TDDGKRIISICREAAILLLDREANFERWIEEEEVIT---------SFSLS-----KDNKYLLV 458 (581)
Q Consensus 401 ~~~i~~---i~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~---------~~~~s-----p~~~~l~~ 458 (581)
..++.. ..+ ...+..+++++.+|.+...|..++...+........ |.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 011111 000 014568899999999999999999855543322111 11110 12356777
Q ss_pred EeeCCcEEEEEecCCCceeEE---EeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 008005 459 NLINQEIHLWSIESDPKLVSR---YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 523 (581)
+..+..+.+.+ +++..-... +...............+.++.+ +.++.||.|+-+|..+|+.+-
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77666666665 333110001 1110000000000000223555 457889999999988888765
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.69 E-value=0.22 Score=48.81 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred cCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEec-CCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCc---------
Q 008005 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--------- 350 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--------- 350 (581)
..+|.-++.+- ++.||.-++.....++....-. ---..|..+..+|+|++||..+.. .|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 34566565553 5778888877544444333211 012257889999999999998754 78888776321
Q ss_pred ---EEEEEec------CCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCCCCe--EEeec---c-----CccccEEEEE
Q 008005 351 ---CLHVYEK------TGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDGRE--LESWK---G-----QKTLRISDMA 408 (581)
Q Consensus 351 ---~~~~~~~------~~~~v~~~~~~~---~~~~l~sg~~dg~i~vwd~~~~~--~~~~~---~-----~~~~~i~~i~ 408 (581)
..+.+.. ...+|..+.|+| .+..|++-..|+.|++||+.... ...+. . .....|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1233332 246799999999 46789999999999999996411 11111 0 1114688999
Q ss_pred EeeCCCEEEEEE--cCCeEEEE
Q 008005 409 ITDDGKRIISIC--REAAILLL 428 (581)
Q Consensus 409 ~~~~~~~l~~~~--~dg~i~i~ 428 (581)
|.+++-.|.+.+ ..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999888888866 77888764
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.52 E-value=0.7 Score=45.35 Aligned_cols=228 Identities=11% Similarity=0.159 Sum_probs=138.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-CcEEEEE
Q 008005 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-GECLHVY 355 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~ 355 (581)
+.-.+|..+.+|.-. ..++.|+|+++..++ +...- ...|..=.|-.+. .|+..+ +..|.-|+++. ..+.+.|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~kl---ks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhh---cceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence 345778888777765 678999999876333 33332 3457777776443 444444 35899999974 3566777
Q ss_pred ecC----CCeEEEEEEecCCCeEEEEe-------CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCC-----CEEEEE
Q 008005 356 EKT----GVGLISCGWFLDGGGIFAGM-------TDKSICLWDLDGRELESWKGQKTLRISDMAITDDG-----KRIISI 419 (581)
Q Consensus 356 ~~~----~~~v~~~~~~~~~~~l~sg~-------~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~l~~~ 419 (581)
..| ...|..-..+++.++++..+ -.|.+.+|..+.+.......+. .... .+-.+| +.++.+
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha-a~F~--~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASFA--QFKMEGNAEESTLFCFA 219 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE-EEEE--EEECTTCSSEEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee-eeeE--EEecCCCCCCceEEEEE
Confidence 665 45677777788888876543 2467889998765544443322 1222 222222 133333
Q ss_pred Ec---CCeEEEEECCCC---e----eeE----Ee---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec
Q 008005 420 CR---EAAILLLDREAN---F----ERW----IE---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 420 ~~---dg~i~i~d~~~~---~----~~~----~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
.. .+.+++.++... . .+. .. ..+-..++..++.-..++.-+.-|.|++||+.++ ..+..-.-
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrI 298 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRI 298 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecc
Confidence 33 278999998543 1 111 11 2445678889998899999999999999999998 55554444
Q ss_pred cccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC
Q 008005 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
....++. .+. .....-+++....|.|.--.++.
T Consensus 299 s~~~iF~--t~~-~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 299 SGETIFV--TAP-HEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CSSCEEE--EEE-ETTTTEEEEEETTCEEEEEEECT
T ss_pred cCCceEE--ecc-cCCCCcEEEEccCceEEEEEEcc
Confidence 4444433 222 22223344445666555554443
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.51 E-value=0.64 Score=44.72 Aligned_cols=229 Identities=12% Similarity=0.102 Sum_probs=126.0
Q ss_pred CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEE--E----ecCCCeEEEEEEecC---CCeEEEE---eCCCcE
Q 008005 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--Y----EKTGVGLISCGWFLD---GGGIFAG---MTDKSI 383 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~sg---~~dg~i 383 (581)
.-...+.|+|.|||.++++--..|.|++++..+++.... + .........++++|+ +..|+.. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344578999999998777765589999998766654322 1 123556889999985 4555543 235566
Q ss_pred EEEeCCCC-----e------EE-eeccCccccEEEEEEeeCCCEEEEEEc-------------CCeEEEEECCCC-----
Q 008005 384 CLWDLDGR-----E------LE-SWKGQKTLRISDMAITDDGKRIISICR-------------EAAILLLDREAN----- 433 (581)
Q Consensus 384 ~vwd~~~~-----~------~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----- 433 (581)
.-|.+... . +. ............+.|.|||...++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66666431 1 11 111111224567999999987777542 356666666543
Q ss_pred ---e-eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCc-----------------eeEEEeccccceeEEE
Q 008005 434 ---F-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPK-----------------LVSRYKGHKRARFVIR 491 (581)
Q Consensus 434 ---~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~-----------------~~~~~~~~~~~~~~i~ 491 (581)
. ..+...-.....++|+|++.+.++-.. ++.=.|.-+..+.. ++..+..+.. ...-
T Consensus 190 Pf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~--ap~G 267 (347)
T 3das_A 190 PFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA--SPSG 267 (347)
T ss_dssp SSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC--CEEE
T ss_pred CCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC--CCcc
Confidence 1 122223344678999998776554321 22222222222111 1111211110 1122
Q ss_pred eeecCCCCcEEEEEeCCCcEEEEeCCCCc----eEEEeccCCCCEEEEEEcCCCCcEEEEEE
Q 008005 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGE----LVLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
+.+. ++.++...-..+.|....+..+. ....+.+..+.+.+|+..||| .++++.+
T Consensus 268 ~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~td 326 (347)
T 3das_A 268 IAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLVTS 326 (347)
T ss_dssp EEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEEEC
T ss_pred eEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEEEc
Confidence 2222 35555555556667666655432 233444445789999999999 4555543
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.48 E-value=0.39 Score=47.04 Aligned_cols=143 Identities=12% Similarity=0.118 Sum_probs=88.3
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe-eeEEecC-----CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc--------
Q 008005 410 TDDGKRIISICREAAILLLDREANF-ERWIEEE-----EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK-------- 475 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-------- 475 (581)
..+|..++.+ .++.||.-++.... .+..... ..+..+..+|+|++|+..+ +..|.|..+..+..
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3445554443 34677777766333 3333332 2578899999999999986 67899988873211
Q ss_pred ---eeEEEecc------ccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--ceEEEec---------cCCCCEEEE
Q 008005 476 ---LVSRYKGH------KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLALA---------GHSGSVNCV 535 (581)
Q Consensus 476 ---~~~~~~~~------~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~---------~h~~~v~~l 535 (581)
..+.+.-. ...+..+.+...+..+..|++-..|+.|++||+... ++. .+. .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 12233322 223333444444456779999999999999998752 222 222 233678899
Q ss_pred EEcCCCCcEEEEEE--CCCcEEE
Q 008005 536 SWNPANLHMLASAS--DDRTIRI 556 (581)
Q Consensus 536 ~~~p~~~~~l~s~s--~Dg~I~i 556 (581)
+|.+++ -.|...+ ..|.|+-
T Consensus 186 ~Fg~~~-lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 186 EFSKDG-LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EECTTS-SCEEEEECTTSCEEEE
T ss_pred EEcCCC-cEEEEEecCCCCCEEE
Confidence 999976 4555544 6677654
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.45 E-value=0.62 Score=43.96 Aligned_cols=173 Identities=10% Similarity=0.122 Sum_probs=98.1
Q ss_pred cCCCeEEEEe--CCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcC--------------CeEEEEECCC
Q 008005 369 LDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE--------------AAILLLDREA 432 (581)
Q Consensus 369 ~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------------g~i~i~d~~~ 432 (581)
.++..++... .++.|+..+.++.....+... .+-.+++++.+|+.+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~-----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND-----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE-----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC-----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566666554 256677777766554444322 234567889988877653 4688888887
Q ss_pred CeeeEEecCCceEEEEECCCCCEEEEEe--eCC--cEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeC-
Q 008005 433 NFERWIEEEEVITSFSLSKDNKYLLVNL--INQ--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE- 507 (581)
Q Consensus 433 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~- 507 (581)
.....+.... +..+++++++|+... .++ .|+..++.. .....+..+.. ..++++++.|+-.+.
T Consensus 98 ~~~~~l~~~~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG--s~~~~lt~~~~-------~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 98 HGSTVLDPDP---CIYASLIGNYIYYLHYDTQTATSLYRIRIDG--EEKKKIKNHYL-------FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp CCCEEEECSC---EEEEEEETTEEEEEEESSSSCEEEEEEETTS--CCCEEEESSCC-------CCSEEETTEEEEECTT
T ss_pred CcceEeecCC---ccEEEEeCCEEEEEeecCCCCceEEEEECCC--CCeEEEeCCCc-------eEeeEECCEEEEEeCC
Confidence 7643333222 236777888888776 344 444445543 33444444332 122556676665544
Q ss_pred CCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECC--CcEEEecCCccc
Q 008005 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD--RTIRIWGLDQIN 563 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~D--g~I~iW~~~~~~ 563 (581)
...|++-++..+.....+. +... ..++|++. .|+-...+ ..|..-+++...
T Consensus 166 ~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 166 NGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSSCC
T ss_pred CceEEEEECCCCCEEEEeC---CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCCCC
Confidence 6789998887665443333 2232 23568884 55544433 355555665544
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.25 E-value=0.14 Score=45.31 Aligned_cols=142 Identities=6% Similarity=-0.086 Sum_probs=81.8
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcE------EEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC------LHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 391 (581)
.+..++|+|++.+.++ .+|.+.-.+..+... -..+-. .-....++.|.|++...++ .||.|+-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6779999998886666 677766666544211 111110 1111367788888876666 6699988876332
Q ss_pred eEEeec-------cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-------eeEEe--cCCceEEEEECCCCCE
Q 008005 392 ELESWK-------GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-------ERWIE--EEEVITSFSLSKDNKY 455 (581)
Q Consensus 392 ~~~~~~-------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~--~~~~i~~~~~sp~~~~ 455 (581)
....+. ...=..+..+.+.|+|...++. ++.++-....+.. ..... .-....-+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 211221 1111368999999999877666 7876544333221 12222 1223445668888887
Q ss_pred EEEEeeCCcEEEEEe
Q 008005 456 LLVNLINQEIHLWSI 470 (581)
Q Consensus 456 l~~~~~d~~i~iwd~ 470 (581)
.++. ++ ++|..
T Consensus 196 ~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 196 FGVQ--GG--KFYED 206 (236)
T ss_dssp EEEE--TT--EEEEE
T ss_pred EEEe--CC--eEEec
Confidence 7776 66 44443
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.24 E-value=1.2 Score=45.13 Aligned_cols=257 Identities=14% Similarity=0.115 Sum_probs=150.6
Q ss_pred EEEEeCCCeEEEEEcccCCeeeEEEEecCC----------------------CCCE--EEEEeCC---CCCeEEEeeC-C
Q 008005 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGH----------------------RKPV--FTVSWSP---NDHQLLTCGQ-E 338 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h----------------------~~~V--~~l~~sp---~~~~l~s~~~-d 338 (581)
+.||+..|.|+|+-+.+...+..+..|... .+.. ..+++.. ||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 667888899999988876554443332211 0111 1233322 6778887764 4
Q ss_pred CcEEEEEcCCCcEEEEEecC-CCeEEEEEEe--cCCCeEEEEeC-------CCcE---------EE---EeCCCCeEEee
Q 008005 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWF--LDGGGIFAGMT-------DKSI---------CL---WDLDGRELESW 396 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~sg~~-------dg~i---------~v---wd~~~~~~~~~ 396 (581)
..|..-++...++-+.+... ...+.++.+- |+..++++++. ||.. .+ .|..+.++. |
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~-~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA-F 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE-E
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE-E
Confidence 56888888888887776644 4567777775 67788887765 3321 11 122222111 1
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcC--------------------------------------C--eEEEEECCC----
Q 008005 397 KGQKTLRISDMAITDDGKRIISICRE--------------------------------------A--AILLLDREA---- 432 (581)
Q Consensus 397 ~~~~~~~i~~i~~~~~~~~l~~~~~d--------------------------------------g--~i~i~d~~~---- 432 (581)
...-......+...+++.+.++.|.+ + .+.+.|.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 10001123344556677777776642 2 466667655
Q ss_pred Ce--eeEEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC-----ce-------eEEEeccccceeEEEeeecCC
Q 008005 433 NF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP-----KL-------VSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 433 ~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~-----~~-------~~~~~~~~~~~~~i~~~~~~~ 497 (581)
.. ..++........+.++|||+++++++. +.++.++|++... ++ +..... ..-.+...| .+
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~---GlGPlHt~F-d~ 387 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL---GLGPLHTTF-DG 387 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC---CSCEEEEEE-CS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC---CCcccEEEE-CC
Confidence 22 555666777888999999999998876 7799999997411 11 111221 122355555 67
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC----------ceEEEeccCCCCEEEEE-----EcCCCCcEEEEEE
Q 008005 498 EQAFIASGSEDSQVYIWHRYTG----------ELVLALAGHSGSVNCVS-----WNPANLHMLASAS 549 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~----------~~~~~~~~h~~~v~~l~-----~~p~~~~~l~s~s 549 (581)
+|....+---|..|.-|++... ..+..+.-|-.+-.-.+ -.|+| ++|++..
T Consensus 388 ~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dG-k~lv~ln 453 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADG-KWLVALS 453 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCS-CEEEEEE
T ss_pred CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCc-cEEEEec
Confidence 8866667778999999998653 35556655543222111 24566 5666653
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.24 E-value=0.31 Score=52.18 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=108.2
Q ss_pred CCCCeEEEeeCC----CcEEEEEcCCCcEEEEE-e-----cC-CCeEEEEEEec-CCCeEEEEeCCC------cEEEEeC
Q 008005 327 PNDHQLLTCGQE----EAIRRWDVNSGECLHVY-E-----KT-GVGLISCGWFL-DGGGIFAGMTDK------SICLWDL 388 (581)
Q Consensus 327 p~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~-----~~-~~~v~~~~~~~-~~~~l~sg~~dg------~i~vwd~ 388 (581)
.++..++.||.+ ..+.+||..+++-...- . .. ...-.+++..+ ++..++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998887654433 1 11 11122333333 677777777543 5889999
Q ss_pred CCCeEEeeccCccccEEEEEEe-eCCCEEEEEEcCC--eEEEEECCCCeeeEEec-------CCceEEEEECCC-CCEEE
Q 008005 389 DGRELESWKGQKTLRISDMAIT-DDGKRIISICREA--AILLLDREANFERWIEE-------EEVITSFSLSKD-NKYLL 457 (581)
Q Consensus 389 ~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-------~~~i~~~~~sp~-~~~l~ 457 (581)
.+.................+.. .++..++.|+.++ .+.+||..+..-..... ......+.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8876655543332222222222 4788888887654 79999998877222221 112233555555 66777
Q ss_pred EEeeC-------CcEEEEEecCCCc--e--eEEEecc-ccceeEEEeeecCCCCcEEEEEeC--------CCcEEEEeCC
Q 008005 458 VNLIN-------QEIHLWSIESDPK--L--VSRYKGH-KRARFVIRSCFGGFEQAFIASGSE--------DSQVYIWHRY 517 (581)
Q Consensus 458 ~~~~d-------~~i~iwd~~~~~~--~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~sgs~--------dg~I~iwd~~ 517 (581)
.|+.+ +.+.+||+.+..- . -..+... ........++. ..++.+++.|+. ...|.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77652 4588999988631 0 1111111 11111111111 122677777774 3469999988
Q ss_pred CCceE
Q 008005 518 TGELV 522 (581)
Q Consensus 518 ~~~~~ 522 (581)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 77654
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.07 E-value=0.39 Score=48.40 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=62.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC------CCCCEEEEEeCCC---CCeEEEeeC-----
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG------HRKPVFTVSWSPN---DHQLLTCGQ----- 337 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~------h~~~V~~l~~sp~---~~~l~s~~~----- 337 (581)
-...+.|+|.|+|+++++-...+.|++++..++ ....+..+.. .......|+|+|+ +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 346689999999997776544457888875433 2333333321 2456789999995 445544432
Q ss_pred --------CCcEEEEEcCCC--c-----EEE-EEec-CCCeEEEEEEecCCCeEEEEe
Q 008005 338 --------EEAIRRWDVNSG--E-----CLH-VYEK-TGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 338 --------dg~i~vwd~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~sg~ 378 (581)
...|.-|+...+ + .+. .+.. .......+.|.|||...++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124555554332 1 111 1211 123468899999998776644
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.88 E-value=0.45 Score=45.77 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=88.2
Q ss_pred ceeecccccCcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEe----cCCCCCEEEEEeCCC---CCeEEEe-
Q 008005 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL----SGHRKPVFTVSWSPN---DHQLLTC- 335 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---~~~l~s~- 335 (581)
.+.++-..-...+.|+|.|||.++++--..|.|++++...+. ...+..+ .........|+++|+ +..|..+
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 344444455678899999999987776558999988765332 2222222 233556899999995 3444432
Q ss_pred --eCCCcEEEEEcCCC----------cEEE-EEe-cCCCeEEEEEEecCCCeEEEEeC-------------CCcEEEEeC
Q 008005 336 --GQEEAIRRWDVNSG----------ECLH-VYE-KTGVGLISCGWFLDGGGIFAGMT-------------DKSICLWDL 388 (581)
Q Consensus 336 --~~dg~i~vwd~~~~----------~~~~-~~~-~~~~~v~~~~~~~~~~~l~sg~~-------------dg~i~vwd~ 388 (581)
..++.|.-|.+..+ +.+. .+. ........+.|.|||...++.+. .|.|.-.+.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 23455666665441 1111 121 11223456899999977666442 355666666
Q ss_pred CCC--------eEEeeccCccccEEEEEEeeCCCEEEE
Q 008005 389 DGR--------ELESWKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 389 ~~~--------~~~~~~~~~~~~i~~i~~~~~~~~l~~ 418 (581)
++. ....+...+. ....++|+|+|...++
T Consensus 182 dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 543 1112222222 4678899998765544
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.85 E-value=0.21 Score=44.23 Aligned_cols=99 Identities=8% Similarity=-0.002 Sum_probs=65.3
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccE--------EEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI--------SDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i--------~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+..++|+|++...++ .+|.++-.+..+.....+... ...| .++.|.++|.+.++ .||.|+-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999998775444 778777777654332333222 1133 78999999987777 669998888644
Q ss_pred Ce-e------eEEec--CCceEEEEECCCCCEEEEEeeCCcEE
Q 008005 433 NF-E------RWIEE--EEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 433 ~~-~------~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
.. . ..+.. =..+..+.+.|+|.+.++. ++.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 22 1 11111 1457999999999888776 77754
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.77 E-value=0.43 Score=54.06 Aligned_cols=221 Identities=10% Similarity=0.047 Sum_probs=129.5
Q ss_pred CcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEE
Q 008005 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 418 (581)
.+|.|.|+.++..+.... -..-+...+|..+.++.- ...++.++|++++.......... +|.-=.|-.+. .|+.
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVAL 121 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEE
Confidence 478888888765442211 111233456766555544 36799999998755443333332 45555555443 3333
Q ss_pred EEcCCeEEEEECCCCe--e-eEE----ecCCceEEEEECCCCCEEEEEee-------CCcEEEEEecCCCceeEEEeccc
Q 008005 419 ICREAAILLLDREANF--E-RWI----EEEEVITSFSLSKDNKYLLVNLI-------NQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~-~~~----~~~~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
. .+..|+.|++.... . .+. -....|..-..+++.++++..+- .|.+.+|..+. +..+.+.||.
T Consensus 122 V-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ~iegha 198 (1630)
T 1xi4_A 122 V-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHA 198 (1630)
T ss_pred E-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccchhhhHhH
Confidence 2 45689999996532 1 111 12466888888999999886553 47899999876 4455666666
Q ss_pred cceeEEEeeecCCCCcEEEEEeC---CCcEEEEeCCCC---ceEE------Eecc---CCCCEEEEEEcCCCCcEEEEEE
Q 008005 485 RARFVIRSCFGGFEQAFIASGSE---DSQVYIWHRYTG---ELVL------ALAG---HSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs~---dg~I~iwd~~~~---~~~~------~~~~---h~~~v~~l~~~p~~~~~l~s~s 549 (581)
..-..+..--..+...+++-+.. .+.++|-++... .... .+-. -.+-..++..++.. .++...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEe
Confidence 54322222211222223322222 268888887542 1111 1111 12344567777776 5888889
Q ss_pred CCCcEEEecCCccccccccC
Q 008005 550 DDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 550 ~Dg~I~iW~~~~~~~~~~~~ 569 (581)
.-|.|.++|+.++.+....+
T Consensus 278 k~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred cCceEEEEecccchhhhhcc
Confidence 99999999999999876544
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.54 E-value=3.4 Score=44.66 Aligned_cols=273 Identities=10% Similarity=0.019 Sum_probs=150.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecC----CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG----HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
..|.++....+|.+.+ |+.+| +..++..++ .+... .... ....|.++...+++..|..|+. +-+..+|..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG-KFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTT-EEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC-ceEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 5688888888887655 44444 777776543 22111 1111 1234888888777665555554 4588889877
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEeecc-------CccccEEEEEEeeCCCEEEEEEc
Q 008005 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
++...........|.++....++ .|..|+. +-+.+++..+........ .....|.++....+|. |..|+.
T Consensus 221 ~~~~~~~~l~~~~i~~i~~d~~g-~lWigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 221 GQIKQTEAFHNNSIKSLALDGNG-DLLAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp TEEEEEEEEEEEEEEEEEECTTC-CEEEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred CeEEeccCCCCCeEEEEEEcCCC-CEEEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 65433222223457777766555 4555664 458888887665543321 1233588888877776 445555
Q ss_pred CCeEEEEECCCCeeeEE-------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc----cceeE
Q 008005 422 EAAILLLDREANFERWI-------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK----RARFV 489 (581)
Q Consensus 422 dg~i~i~d~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~~~~~ 489 (581)
.| +.++.......... .....|.++....+|.+-+ |+.+ -+..++..++. .....+.... -....
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSC
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCcCCCCCCCc
Confidence 66 54443322111111 1134588888888776554 4544 46666654321 1122222110 01112
Q ss_pred EEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-c-----CCCCEEEEEEcCCCCcEEEEEECCCcEEEecCC
Q 008005 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-G-----HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~-----h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+.+.+-..++.+ ..|+ ++-|..||..+++...-.. . ....|.++.-.+++ .|..|+..+-|.+++..
T Consensus 375 v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 375 IRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp EEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHH
T ss_pred eEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccc
Confidence 333443555554 4455 4569999988776543211 1 23468888887777 45556666667777754
No 348
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.35 Score=46.30 Aligned_cols=183 Identities=8% Similarity=0.028 Sum_probs=96.9
Q ss_pred CEEEEEeCCCeEEEEEcccCCeeeEEEEecCC-CCCEEEEEe--CC-CCCeEEEe-eCCCcEEEEEcCCCcEEEEEecC-
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSW--SP-NDHQLLTC-GQEEAIRRWDVNSGECLHVYEKT- 358 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~--sp-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~- 358 (581)
.+++.++.||.|.-.|..++ +....+... ..++....- .+ ++..++.. +.||.+..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 36788889999999998766 333333322 122222110 01 23334343 58999999999988665544422
Q ss_pred ---CCeEEE---EEE-----ecCCCeEEEEeCCCcEEEEeCCCCeEEeeccCccc-c------EEEEEEe-----eCCCE
Q 008005 359 ---GVGLIS---CGW-----FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL-R------ISDMAIT-----DDGKR 415 (581)
Q Consensus 359 ---~~~v~~---~~~-----~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~-~------i~~i~~~-----~~~~~ 415 (581)
..++.. ... ...+..+++|+.+|.+...|+.+++..-....... . ..|.... ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 112221 000 01466889999999999999988776654433210 0 0011110 12356
Q ss_pred EEEEEcCCeEEEEECCCCeeeEEe----c-CCceE-----EEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008005 416 IISICREAAILLLDREANFERWIE----E-EEVIT-----SFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~~----~-~~~i~-----~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
++.+..+..+.+.+ +++. .+.. . ...+. +-..+.|+.+ ++++.||.|.-+|..++
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTC
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCC
Confidence 77777777777766 3332 1110 0 00000 0001124555 45788999999998876
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.08 E-value=0.47 Score=50.80 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=83.7
Q ss_pred CCCEEEEEeCC------CeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCC--cEEEEEcCCCcEEEE
Q 008005 283 DGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSGECLHV 354 (581)
Q Consensus 283 ~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--~i~vwd~~~~~~~~~ 354 (581)
++++++.||.+ ..+.+||..++ .+.....+...... .+++...++..++.||.++ .+.+||..+.+-...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67777777744 35788888753 44333322221111 2233323788888888755 699999988764332
Q ss_pred Ee-----cCCCeEEEEEEecC-CCeEEEEeC--C-----CcEEEEeCCCCe------EEeeccC-ccccE-EEEEEeeCC
Q 008005 355 YE-----KTGVGLISCGWFLD-GGGIFAGMT--D-----KSICLWDLDGRE------LESWKGQ-KTLRI-SDMAITDDG 413 (581)
Q Consensus 355 ~~-----~~~~~v~~~~~~~~-~~~l~sg~~--d-----g~i~vwd~~~~~------~~~~~~~-~~~~i-~~i~~~~~~ 413 (581)
-. .......++.+..+ +..++.|+. + +.+.+||+.+.. ....... ...+. .+++...++
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR 608 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence 21 11222233555554 556666765 2 358899997766 2222211 11111 223334446
Q ss_pred CEEEEEEc--------CCeEEEEECCCCe
Q 008005 414 KRIISICR--------EAAILLLDREANF 434 (581)
Q Consensus 414 ~~l~~~~~--------dg~i~i~d~~~~~ 434 (581)
+.++.|+. ...+.+||..+..
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 77777764 3468999998876
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.00 E-value=3 Score=40.90 Aligned_cols=178 Identities=10% Similarity=0.023 Sum_probs=91.6
Q ss_pred EEEEEeCCCeEEEEEccc-CCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCC----cEEEEEcCCCcEEEEEec--
Q 008005 286 YLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE----AIRRWDVNSGECLHVYEK-- 357 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~-- 357 (581)
.|..|+..| +.+++... +..+...... .....|.+|++.| +...|..++..| .|...+ ..++.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 566677666 55555432 2344433211 2235699999998 334455555444 333322 23332222211
Q ss_pred ------------CCCeEEEEEEec-C-CCeEEEEeCCCcEEEEeCCCCeEEeecc------------------CccccEE
Q 008005 358 ------------TGVGLISCGWFL-D-GGGIFAGMTDKSICLWDLDGRELESWKG------------------QKTLRIS 405 (581)
Q Consensus 358 ------------~~~~v~~~~~~~-~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~------------------~~~~~i~ 405 (581)
....|.++++.| + ...+++++..+.|...+-.+........ .....+.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 112577788886 2 5677777777766665544433333221 1123578
Q ss_pred EEEEeeC-CCEEEEEEcCCeEEEEECCCCe-eeEEe--c-----------CCceEEEEECCC-CCEEEEEeeCCcEEE
Q 008005 406 DMAITDD-GKRIISICREAAILLLDREANF-ERWIE--E-----------EEVITSFSLSKD-NKYLLVNLINQEIHL 467 (581)
Q Consensus 406 ~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~--~-----------~~~i~~~~~sp~-~~~l~~~~~d~~i~i 467 (581)
++.+.|. ...++++..++.|...+-.... ..... . ...+.++.++|+ ...++++... .|..
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~ 257 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYR 257 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEE
Confidence 8999873 4556666655555544332222 11110 0 124788999985 4667766643 3443
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.59 E-value=8.2 Score=37.64 Aligned_cols=263 Identities=11% Similarity=0.089 Sum_probs=125.6
Q ss_pred cCcEEEEEEcC--CCCEEEEEeCCC--eEEEEEcc-cCCeeeEEEE---ecC--------CCCCEEEEEeCC-C-CCeEE
Q 008005 272 SDEVWFLQFSH--DGKYLASSSKDQ--SAIIWEVK-EDGQVSLKHR---LSG--------HRKPVFTVSWSP-N-DHQLL 333 (581)
Q Consensus 272 ~~~V~~l~~s~--~g~~lasgs~dg--~i~iwd~~-~~~~~~~~~~---~~~--------h~~~V~~l~~sp-~-~~~l~ 333 (581)
...|.+|++.| ++.+.|.+ ..| ...||... .+..+..... +.. +...|.++++.| + ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35799999998 55555444 333 11234333 2333332221 111 113578899987 2 45666
Q ss_pred EeeCCCcEEEEEcCCCcEEEEEec-------------------CCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeE
Q 008005 334 TCGQEEAIRRWDVNSGECLHVYEK-------------------TGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~ 393 (581)
.++..+.|...+ ..|+.-..+.. ....+.++.+.| +...++.+..++.|...+-.+...
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW 211 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc
Confidence 666555554442 22332222211 123577888887 345667676666555544333333
Q ss_pred EeeccC-c-----------cccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-eeEEe-c-C---CceEEEEECC-CC
Q 008005 394 ESWKGQ-K-----------TLRISDMAITDD-GKRIISICREAAILLLDREANF-ERWIE-E-E---EVITSFSLSK-DN 453 (581)
Q Consensus 394 ~~~~~~-~-----------~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~-~---~~i~~~~~sp-~~ 453 (581)
...... . ...+.++.+.|. ...++++...+ |...+-.... ..... . . ..+.++.++| +.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 222110 0 124888999886 35666665544 5554433332 11111 1 1 2356788876 34
Q ss_pred CEEEEEee-----------CCcEEEEEecCCCceeEEEe-cccc-cee--EE-EeeecCC-CCcEEEEEeCCCcEEEEeC
Q 008005 454 KYLLVNLI-----------NQEIHLWSIESDPKLVSRYK-GHKR-ARF--VI-RSCFGGF-EQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 454 ~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~-~~~~-~~~--~i-~~~~~~~-~~~~l~sgs~dg~I~iwd~ 516 (581)
..+++++. ++...+|...+....-..+. +... ..+ .+ ..+...| +...|+.++.++.|+.-+
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~- 369 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA- 369 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-
Confidence 44555532 23355666555333333332 1111 000 00 0111233 334466666666665443
Q ss_pred CCCceEEEeccCCCCEEEEEEc
Q 008005 517 YTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 517 ~~~~~~~~~~~h~~~v~~l~~~ 538 (581)
..|+.-..+..+-..+.+|.|.
T Consensus 370 D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 370 DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp STTSBCEEEECSCSCEEEEEEE
T ss_pred CCCCCceEcccCCCCeeEEEEe
Confidence 3344444444444567777764
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.45 E-value=3.7 Score=38.11 Aligned_cols=222 Identities=11% Similarity=0.061 Sum_probs=110.5
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeec
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWK 397 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~ 397 (581)
.|..++.... ..++. . ||.|..|-....-.+..-......|..++.-.+ ..++. . ||.|+.|-... +++-. .
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~-P 97 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV-P 97 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC-C
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC-C
Confidence 4666665433 22333 4 888888865432111111111234555554322 22333 4 89999997643 22111 1
Q ss_pred cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008005 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 398 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
..-...|..++...+ ..++.. +|.|+.|-....- -........|..++...+. .++-. +|.++.|-.....+
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC
Confidence 111235777766544 444455 9999999765432 1111223456666654332 23333 79999997765322
Q ss_pred eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008005 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
+-.... ....+..+.+ .. .+.+.- .||.|+.|-......+..-......|..|+..... .++.. ||.|.
T Consensus 172 lg~p~~-~~~~v~~i~~---G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g~v~ 240 (282)
T 3qhy_B 172 TTVPAE-AQSGVDDVAG---GI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NGKVI 240 (282)
T ss_dssp TSCCGG-GGSSEEEEEE---CS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TTEEE
T ss_pred CCCcee-cCCCeEEEEe---cC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CCEEE
Confidence 211100 1122222222 22 223333 59999999754321111111122457788766544 34433 99999
Q ss_pred EecCCcccc
Q 008005 556 IWGLDQINM 564 (581)
Q Consensus 556 iW~~~~~~~ 564 (581)
.|-.+....
T Consensus 241 ~wG~n~~gq 249 (282)
T 3qhy_B 241 AWGSSRTAP 249 (282)
T ss_dssp EESTTCCCC
T ss_pred EecCCCCcc
Confidence 998876443
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.36 E-value=5.9 Score=36.72 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=118.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcccCCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEE
Q 008005 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.|..++..... .++. . ||.|+.|-....+++.... .....|..++...+. .++. . ||.|..|-....-.+.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~---~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPA---ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCG---GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCc---cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC
Confidence 45566654432 3333 4 8999999876544332111 112356667665332 3333 4 8999999754321111
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008005 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.-..-...|..++.-. .+.+.-. ||.|+.|-... +++- ........|..++...+ ..++.. +|.|+.|-...
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCT
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCC
Confidence 1111123566666543 3444445 99999997643 2221 11112235766665443 333334 79999997654
Q ss_pred Ce-e-eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCc
Q 008005 433 NF-E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 433 ~~-~-~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
.- . ........|..++...+. .++- .+|.++.|-.....++-..... ...+..+.+ ... +.+.-. ||.
T Consensus 169 ~gqlg~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~-~~~v~~i~~---G~~--h~~al~-~g~ 238 (282)
T 3qhy_B 169 FGQTTVPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEA-LSGVSAIAS---GEW--YSLALK-NGK 238 (282)
T ss_dssp TSTTSCCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGG-GSSCCEEEE---CSS--CEEEEE-TTE
T ss_pred CCCCCCceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCccc-CCCceEEEc---CCC--EEEEEE-CCE
Confidence 32 1 111123456777664432 2333 5999999986553222111111 112222322 222 223333 999
Q ss_pred EEEEeCCCCceEEEeccCCCCEEEEEEcCCC
Q 008005 511 VYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 511 I~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 541 (581)
|+.|-.....++.. ...|.+++.....
T Consensus 239 v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 239 VIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp EEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred EEEecCCCCccccC----CCCcEEEEECcCe
Confidence 99997554322211 2356666665543
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.09 E-value=30 Score=36.78 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=119.0
Q ss_pred EEE-eCCCCCeEEEe-eC----CCcEEEEEcCCCcEEE-EEe-cCCC------eEEEEEEecCCCeEEEEeC--------
Q 008005 322 TVS-WSPNDHQLLTC-GQ----EEAIRRWDVNSGECLH-VYE-KTGV------GLISCGWFLDGGGIFAGMT-------- 379 (581)
Q Consensus 322 ~l~-~sp~~~~l~s~-~~----dg~i~vwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~sg~~-------- 379 (581)
.+. ++|++++++.+ +. -..++++|+.+++.+. .+. ..+. ....++|. |+..++.+..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCc
Confidence 344 78888876654 22 2369999999998653 111 0011 11345887 4445544321
Q ss_pred ---CCcEEEEeCCCCe---EEeeccCccccEEEEEEeeCCCE-----EEEEEc---CCeEEEEECCCC--eeeEEecCCc
Q 008005 380 ---DKSICLWDLDGRE---LESWKGQKTLRISDMAITDDGKR-----IISICR---EAAILLLDREAN--FERWIEEEEV 443 (581)
Q Consensus 380 ---dg~i~vwd~~~~~---~~~~~~~~~~~i~~i~~~~~~~~-----l~~~~~---dg~i~i~d~~~~--~~~~~~~~~~ 443 (581)
...|+.|.+-+.. ...+.............++++++ +++.+. ...+++.+.... ....+.....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD 291 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence 2468888875431 12222222212334555666662 343331 245667676532 2111111111
Q ss_pred eEEEEECCCCCEEEEE----------eeCCcEEEEEecCCC------ceeEEEeccccceeEEEeeecCCCCcEEEEEeC
Q 008005 444 ITSFSLSKDNKYLLVN----------LINQEIHLWSIESDP------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~----------~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
. .+..+.++.+++.. ...+.|...|+.+.. .....+..+.... .+....+.. +.++++...
T Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~l~~~~~~ 368 (711)
T 4hvt_A 292 A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE-VFNFISTTK-DRVFLATYD 368 (711)
T ss_dssp C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE-EEEEEEECS-SCEEEEEEE
T ss_pred c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC-eEEEEEEEC-CEEEEEEEE
Confidence 1 12233355444422 236678888887631 1223323333322 233333343 467778777
Q ss_pred CC--cEEEEeCCCCc-eEEE-eccC-CCCEEEEEEcCCCCcEEEEEECC---CcEEEecCC
Q 008005 508 DS--QVYIWHRYTGE-LVLA-LAGH-SGSVNCVSWNPANLHMLASASDD---RTIRIWGLD 560 (581)
Q Consensus 508 dg--~I~iwd~~~~~-~~~~-~~~h-~~~v~~l~~~p~~~~~l~s~s~D---g~I~iW~~~ 560 (581)
++ .|++++..+++ .... +.-. .+.+..+...+++..++++.+.. +.+..+++.
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 87 56777776664 1222 2211 35677777777776676666543 567777765
No 355
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=87.29 E-value=0.23 Score=25.69 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=10.0
Q ss_pred CCCCCccccccC
Q 008005 5 EESEPPLKRAKG 16 (581)
Q Consensus 5 ~~~~~~~~~~~~ 16 (581)
+||+||.||+++
T Consensus 16 ddddppkkrrrl 27 (28)
T 3ukx_C 16 DDDDPPKKRRRL 27 (28)
T ss_dssp CSSSCCSCCCCC
T ss_pred cCCCchhhhhcc
Confidence 678899999875
No 356
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=86.70 E-value=0.17 Score=26.17 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=10.1
Q ss_pred CCCCCccccccC
Q 008005 5 EESEPPLKRAKG 16 (581)
Q Consensus 5 ~~~~~~~~~~~~ 16 (581)
||+|||-||.++
T Consensus 16 edeepprkrkrl 27 (28)
T 3ukw_C 16 EDEEPPRKRKRL 27 (28)
T ss_dssp GGGSCCSSCCCC
T ss_pred cccCcchhhhcc
Confidence 788999998775
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.67 E-value=30 Score=35.26 Aligned_cols=229 Identities=10% Similarity=0.095 Sum_probs=132.8
Q ss_pred EEEeeCCCcEEEEEcCCCcEEEEEecCC-------------------------Ce--EEEEEEe---cCCCeEEEEeC-C
Q 008005 332 LLTCGQEEAIRRWDVNSGECLHVYEKTG-------------------------VG--LISCGWF---LDGGGIFAGMT-D 380 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------~~--v~~~~~~---~~~~~l~sg~~-d 380 (581)
+.||+..|.|+|+-+.+++.+..+.... +. -..+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7788999999999999999888764210 00 1123332 25777877764 5
Q ss_pred CcEEEEeCCCCeEEeecc-CccccEEEEEEe--eCCCEEEEEEc-------CCeE------------EEEECCCCeeeE-
Q 008005 381 KSICLWDLDGRELESWKG-QKTLRISDMAIT--DDGKRIISICR-------EAAI------------LLLDREANFERW- 437 (581)
Q Consensus 381 g~i~vwd~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~-------dg~i------------~i~d~~~~~~~~- 437 (581)
..|...+++..+...... .....+..+.+- |+..++++++. ||.. ...|..+....+
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 578888887655443332 223367777775 67778887764 2221 112333322111
Q ss_pred EecCCceEEEEECCCCCEEEEEeeCC---------------cEEEEEecC-------C-Cc-----eeEEEeccc-----
Q 008005 438 IEEEEVITSFSLSKDNKYLLVNLINQ---------------EIHLWSIES-------D-PK-----LVSRYKGHK----- 484 (581)
Q Consensus 438 ~~~~~~i~~~~~sp~~~~l~~~~~d~---------------~i~iwd~~~-------~-~~-----~~~~~~~~~----- 484 (581)
....+....+..++++.+.++.+.+. .+.++++.. + .+ -+..+.+..
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 11233444556677888877776432 355665531 0 00 122222221
Q ss_pred -cceeEEE------eeecCCCCcEEEEEeC-CCcEEEEeCCCC------ce-------EEEeccCCCCEEEEEEcCCCCc
Q 008005 485 -RARFVIR------SCFGGFEQAFIASGSE-DSQVYIWHRYTG------EL-------VLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 485 -~~~~~i~------~~~~~~~~~~l~sgs~-dg~I~iwd~~~~------~~-------~~~~~~h~~~v~~l~~~p~~~~ 543 (581)
...+.+. -+-.+|+|+++++++. +.++.++|+..- +. ..... -.-.....+|.++| +
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~ 390 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-N 390 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-E
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-c
Confidence 1111111 1223789998877665 779999997642 11 22333 23456788999999 6
Q ss_pred EEEEEECCCcEEEecCCcc
Q 008005 544 MLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~ 562 (581)
...|.-.|..|.-|++...
T Consensus 391 aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEETTTTEEEEEEHHHH
T ss_pred eEeeeeecceEEEEeccHH
Confidence 7777779999999999764
No 358
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=86.05 E-value=0.71 Score=33.28 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCc
Q 008005 65 EFIKIITRALYSLGYDKSGALLEEESGIP 93 (581)
Q Consensus 65 e~~~lI~q~L~e~g~~~s~~~l~~Esg~~ 93 (581)
-+.-||-.||+-+||+.|+.+|+-|+|.+
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 57889999999999999999999999997
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.46 E-value=30 Score=32.57 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=106.3
Q ss_pred CCCCEEEEEeCCCeEEEEEcccC---CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEc---CC------C
Q 008005 282 HDGKYLASSSKDQSAIIWEVKED---GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV---NS------G 349 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~---~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~---~~------~ 349 (581)
|+..++++.+.+|.|+--....- +. ....+... +.+..+........|+..+..|.+.-... .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~--~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG--QDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT--CCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc--cccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 56677888999999987765411 10 00122333 33444444444556666777787555443 22 2
Q ss_pred cEEEE-Ee-cCCCeEEEEEEecC---CCeEEEEeCCCcEEEEeCCC-------CeEEeeccCccccEEEEEEeeCCCEEE
Q 008005 350 ECLHV-YE-KTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDG-------RELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 350 ~~~~~-~~-~~~~~v~~~~~~~~---~~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~ 417 (581)
..+.. +. .....|.++...++ +.+++..+.+|.++...+.. .-...........+..+........++
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 21111 11 12334555443332 56799999999999988731 112222222224566666666667888
Q ss_pred EEEcCCeEEEEECCCCe--------ee--EEecCCceEEEEECCCCC-EEEEEeeCCcEEEEEecC
Q 008005 418 SICREAAILLLDREANF--------ER--WIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIES 472 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~ 472 (581)
..+.+|.+..++...-. .. .......|.++...+++. .+++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 99999998888764311 11 123345566665444444 788888888888877754
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.86 E-value=35 Score=32.19 Aligned_cols=199 Identities=6% Similarity=-0.025 Sum_probs=112.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCeEEEEEcc---cCCe---eeEE---EEecCCCCCEEEE-EeCC--CCCeEEEeeCCC
Q 008005 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVK---EDGQ---VSLK---HRLSGHRKPVFTV-SWSP--NDHQLLTCGQEE 339 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~---~~~~---~~~~---~~~~~h~~~V~~l-~~sp--~~~~l~s~~~dg 339 (581)
.+.+..+........|+.-+..|.++-.... .... -..+ ..+. ....|.++ .... +..++++++.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 3455555555555566666677776655543 1100 0010 0122 23345554 3432 577999999999
Q ss_pred cEEEEEcCCC-------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC--CCeE--------EeeccCccc
Q 008005 340 AIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD--GREL--------ESWKGQKTL 402 (581)
Q Consensus 340 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~--------~~~~~~~~~ 402 (581)
.++--.+..- .....+.. .+.+..+........++..+..|.+..+... .-.. ....-....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d 198 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDD 198 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTC
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCC
Confidence 9999876542 11112223 3455555555566788889999988888765 2111 111112234
Q ss_pred cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--------ee---EEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 403 RISDMAITDDGKRIISICREAAILLLDREANF--------ER---WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 403 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~---~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.|.++...+++..++.++..|.++...+..-. .. .....+.+..+....+...++..+.+|.+.-++..
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 57777776777789999999999887754321 11 11113345444444445566667777777777664
Q ss_pred C
Q 008005 472 S 472 (581)
Q Consensus 472 ~ 472 (581)
.
T Consensus 279 ~ 279 (327)
T 3uc1_A 279 Q 279 (327)
T ss_dssp G
T ss_pred h
Confidence 3
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.60 E-value=45 Score=33.25 Aligned_cols=107 Identities=12% Similarity=-0.003 Sum_probs=60.3
Q ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEEcccCCeeeEEEEec---------CCCCCEEEEEeCCC----CCeEEEeeC-
Q 008005 273 DEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLS---------GHRKPVFTVSWSPN----DHQLLTCGQ- 337 (581)
Q Consensus 273 ~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~V~~l~~sp~----~~~l~s~~~- 337 (581)
..-+.|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999996 45555678999999754211001111111 12457889999996 443333222
Q ss_pred -C----------CcEEEEEcCC----------CcEEEEEe--cCCCeEEEEEEecCCCeEEEEeC
Q 008005 338 -E----------EAIRRWDVNS----------GECLHVYE--KTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 338 -d----------g~i~vwd~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
+ ..|.-|.+.. .+.+..+. ........+.|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455532 12333332 12334678999999977666554
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=81.08 E-value=47 Score=33.12 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=59.6
Q ss_pred CEEEEEeCCCCC-eEEEeeCCCcEEEEEcCCCc---EEEEEe---------cCCCeEEEEEEecC---CCeEEEEe-C--
Q 008005 319 PVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGE---CLHVYE---------KTGVGLISCGWFLD---GGGIFAGM-T-- 379 (581)
Q Consensus 319 ~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~l~sg~-~-- 379 (581)
.-+.|+|.||+. .|+++...|.|++++..... .+..+. ........++++|+ +..|++.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999996 56666788999999754221 112211 01356788999986 33444332 1
Q ss_pred C----------CcEEEEeCCC----------Ce-EEeec-cCccccEEEEEEeeCCCEEEEEEc
Q 008005 380 D----------KSICLWDLDG----------RE-LESWK-GQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 380 d----------g~i~vwd~~~----------~~-~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~ 421 (581)
+ ..|.-|.+.. .+ +.... .........|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1344455531 11 11111 112235788999999987777654
No 363
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=80.71 E-value=42 Score=32.31 Aligned_cols=190 Identities=13% Similarity=0.072 Sum_probs=108.8
Q ss_pred cCCCCEEEEEeCCCeEEEEEccc------CCeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEE---cCC---
Q 008005 281 SHDGKYLASSSKDQSAIIWEVKE------DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD---VNS--- 348 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd---~~~--- 348 (581)
-|+..++++.+.+|.|+--.+.. ++.-.....++ ..+.+..+........|+..+..|.+.-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998765432 10001112233 244555555555556677677777765544 322
Q ss_pred ---CcEEE---EEecCCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCCC------CeEEeeccCccccEEEEEEeeCC
Q 008005 349 ---GECLH---VYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDG------RELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 349 ---~~~~~---~~~~~~~~v~~~~~~~---~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~~~~~i~~i~~~~~~ 413 (581)
|..+. .+. ....|.++.... ++.+++.++..|.++...+.. .-...........+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 22111 112 234555554432 456899999999999988632 11112221223455566666666
Q ss_pred CEEEEEEcCCeEEEEECCCCe--------ee--EEecCCceEEEEECC--------------------------------
Q 008005 414 KRIISICREAAILLLDREANF--------ER--WIEEEEVITSFSLSK-------------------------------- 451 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~sp-------------------------------- 451 (581)
..++..+..|.+..++...-. .. .+.....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~ 241 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVA 241 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC------------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccc
Confidence 788888999988888754311 11 123344555555443
Q ss_pred ---CCCEEEEEeeCCcEEEEEecC
Q 008005 452 ---DNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 452 ---~~~~l~~~~~d~~i~iwd~~~ 472 (581)
++..+++.+..|..+...+..
T Consensus 242 ~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 242 DNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp -----CEEEEEETTSEEEEEEGGG
T ss_pred cccCCceEEEeeCCCCEEEEEHHH
Confidence 446788889999888887753
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.67 E-value=46 Score=32.18 Aligned_cols=265 Identities=11% Similarity=0.128 Sum_probs=129.4
Q ss_pred EEEEEeCCCeEEEEEcccCCeee--------EEEEecC-CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCCC-------
Q 008005 286 YLASSSKDQSAIIWEVKEDGQVS--------LKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG------- 349 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~--------~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~------- 349 (581)
.++.-..||+|..|=....+++- ....... ....|..++- .....+....||.|..|-....
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 34444567888888655432211 1111110 0112444443 2345555567888888853321
Q ss_pred -c---EEEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC------------CeEEeeccCccccEEEEEEeeC
Q 008005 350 -E---CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG------------RELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 350 -~---~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~i~~~~~ 412 (581)
. ....+.. ....+..++.+....+.++-..||.|+.|-... .............|..++. .
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G 167 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--G 167 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--C
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--C
Confidence 1 1111111 123344455555666777788899999996531 0111111122224555544 3
Q ss_pred CCEEEEEEcCCeEEEEECCCCe------------eeEE--ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc---
Q 008005 413 GKRIISICREAAILLLDREANF------------ERWI--EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK--- 475 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~------------~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--- 475 (581)
....++...+|.|+.|-....- .... .....+..++......+.++-..++.|+.|-.....+
T Consensus 168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~ 247 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 247 (389)
T ss_dssp SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS
T ss_pred cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC
Confidence 4566777889999999754310 0111 1123466666654345666667899999997543111
Q ss_pred ------ee-EEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC--------c---eEEEecc-CCCCEEEEE
Q 008005 476 ------LV-SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------E---LVLALAG-HSGSVNCVS 536 (581)
Q Consensus 476 ------~~-~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------~---~~~~~~~-h~~~v~~l~ 536 (581)
.. ..+..... ...+.... ...+.+.-..||.|+.|-.... . ....+.. ....|..|+
T Consensus 248 g~~~~~~~p~~v~~~~~-~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia 323 (389)
T 3kci_A 248 GGSDGCKVPMKIDSLTG-LGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA 323 (389)
T ss_dssp SSCCCEEEEEECGGGTT-SCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE
T ss_pred CCCCCccccEEecccCC-CcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE
Confidence 01 11111111 11122211 2244556678999999964321 0 1112221 123577776
Q ss_pred EcCCCCcEEEEEECCCcEEEecCCc
Q 008005 537 WNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
... ...+....||.|..|-.+.
T Consensus 324 ~G~---~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 324 TGS---LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ECS---SEEEEEETTCCEEEEECCT
T ss_pred ecc---CeEEEECCCCCEEEeeCCC
Confidence 644 3445557899999998764
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.03 E-value=47 Score=30.36 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=110.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEE---EcccCCeeeEEEEecCCCCCEEEEEeCC-CCCeEEEeeCCCcEEEEEcCC
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIW---EVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iw---d~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~ 348 (581)
+.+..+.......+|+.-+.+|.++-- ++....... + +. ....|..+.... +..+++.++.+|.++-..+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 466666655555667667778876643 333221111 1 33 345566664421 467899999999999988754
Q ss_pred Cc------EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--------EEeeccCccccEEEEEEeeCCC
Q 008005 349 GE------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--------LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 349 ~~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
-. ....++. .+.+..+....+...++..+..|.+..+....-. .....-.....|..+...+++.
T Consensus 100 ~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 100 FEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEP 178 (276)
T ss_dssp TTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred hhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence 31 1112222 3455555555566688889999998888763111 1111112234676766666677
Q ss_pred EEEEEEcCCeEEEEECCCCe--------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEE--EEec
Q 008005 415 RIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL--WSIE 471 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i--wd~~ 471 (581)
.++..+..|.++...+..-. .......+.+..+....+...++..+.+|.+.. ++..
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 89999999998888764322 111123344444433333345555666666666 6554
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=75.42 E-value=61 Score=31.31 Aligned_cols=225 Identities=13% Similarity=0.179 Sum_probs=116.9
Q ss_pred CEEEEEeCCCeEEEEEcccCCe--------eeEEEEecC-CCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcCC-C-----
Q 008005 285 KYLASSSKDQSAIIWEVKEDGQ--------VSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-G----- 349 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~--------~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~----- 349 (581)
...+.-..||.|+.|-....++ ......+.. ....+..++.+......+....||.|..|-... +
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 3444456788888886543211 111111221 223455566766666777778899999995432 1
Q ss_pred ---c--EEEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-C-----------eEEeeccCccccEEEEEEee
Q 008005 350 ---E--CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-R-----------ELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 350 ---~--~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~-----------~~~~~~~~~~~~i~~i~~~~ 411 (581)
. ....+.. ....|..++. ...+.++...+|.|+.|-... + ............|..++...
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 0 1111211 1224555544 345666677899999997532 0 11122222233567776655
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe------------eeEEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCce-
Q 008005 412 DGKRIISICREAAILLLDREANF------------ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL- 476 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~- 476 (581)
.....++...+|.|+.|-....- ...... ...|..++.- ..+.++-..+|.|+.|-.....++
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCC
Confidence 44677778899999999754311 011111 1235555443 344555567899999976431110
Q ss_pred ---------eEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 477 ---------VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 477 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
...+.... ....+.... ...+.+....||.|+.|=..
T Consensus 299 ~g~~~~~~~P~~v~~l~-~~~v~~ia~---G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQ-GKKVIAIAT---GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SSSCCCEEEEEECGGGT-TCCEEEEEE---CSSEEEEEETTCCEEEEECC
T ss_pred CCCCccccCCeEeccCC-CCCEEEEEe---ccCeEEEECCCCCEEEeeCC
Confidence 11111111 111222222 23455666889999999754
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.80 E-value=62 Score=30.21 Aligned_cols=189 Identities=9% Similarity=0.036 Sum_probs=109.3
Q ss_pred CCCCEEEEEeCCCeEEEEEcccCCee------eEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEEEEcC---CCcEE
Q 008005 282 HDGKYLASSSKDQSAIIWEVKEDGQV------SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN---SGECL 352 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~---~~~~~ 352 (581)
++..++++.+.+|.|+--....-... .....+... +.+..+........++..+..|.++-.... .....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678889999999988776432110 001112222 334444444445567777788876665543 21100
Q ss_pred ---------EEEecCCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCCCCe------EEeeccCccccEEEEEEeeCCC
Q 008005 353 ---------HVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 353 ---------~~~~~~~~~v~~~~~~~---~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~i~~~~~~~ 414 (581)
..+. ....|..+...+ ++.+++..+..|.++...+..-. ...........+..+....+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 0111 123455554333 46778899999999988873211 1111112234566666666667
Q ss_pred EEEEEEcCCeEEEEECCCCe--------eeE--EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 415 RIISICREAAILLLDREANF--------ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~--------~~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
.++..+.+|.+..+....-. ... ......+.++..-.++..+++.+..|.....++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 89999999999888765411 111 22355667766655667788888899988888754
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.70 E-value=36 Score=37.62 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=27.0
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
.++..++++-+.|+++++|++.+++++.+.
T Consensus 244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567889999999999999999999988764
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.25 E-value=37 Score=37.55 Aligned_cols=38 Identities=11% Similarity=0.329 Sum_probs=33.6
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999988764
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=61.29 E-value=1.2e+02 Score=29.21 Aligned_cols=185 Identities=9% Similarity=-0.005 Sum_probs=102.3
Q ss_pred cEEEEEcCCC--cEEEEEecC------CCeEEEEEEe---cC----CCeEEEEe-CCCcEEEEeCCCCeEEeeccCcccc
Q 008005 340 AIRRWDVNSG--ECLHVYEKT------GVGLISCGWF---LD----GGGIFAGM-TDKSICLWDLDGRELESWKGQKTLR 403 (581)
Q Consensus 340 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~ 403 (581)
.|.+||+.++ +.++.+.-. ...+..+.+. ++ +.+++.+. ..+.|.++|+.+++........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5888999999 888887643 3456777777 22 33444444 4678999999887766555321
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeEEecCCceEEEEECCC----CCEEEEEeeCCcEEEEEecC-----C-
Q 008005 404 ISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKD----NKYLLVNLINQEIHLWSIES-----D- 473 (581)
Q Consensus 404 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~----~~~l~~~~~d~~i~iwd~~~-----~- 473 (581)
+.|+..... .-+|.-. .....+..++++|+ ++.|+.....+. ++|.+.+ .
T Consensus 201 -----~~pd~~~~~--~i~G~~~------------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 201 -----FKAERPTKF--DYGGKEY------------EFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKG 260 (381)
T ss_dssp -----GSCCSCEEE--EETTEEE------------EECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTT
T ss_pred -----CccccCcce--EECCEEe------------EeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcc
Confidence 223311111 1112111 12345889999998 777777665542 3333321 1
Q ss_pred -CceeEEEecccc-ceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCC-C---ceEEEecc--CCCCEEEEEEcCCCCcEE
Q 008005 474 -PKLVSRYKGHKR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-G---ELVLALAG--HSGSVNCVSWNPANLHML 545 (581)
Q Consensus 474 -~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~---~~~~~~~~--h~~~v~~l~~~p~~~~~l 545 (581)
...++.+ +..+ ....+....-+.+|.++++--+.+.|..|+..+ . +....+.. .-..+.++.+.+++ .+.
T Consensus 261 ~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g-~Lw 338 (381)
T 3q6k_A 261 GKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG-GLW 338 (381)
T ss_dssp CCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS-CEE
T ss_pred hhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC-eEE
Confidence 1122222 2222 111222222135788888888889999999765 1 11222221 12346778887777 566
Q ss_pred EEEE
Q 008005 546 ASAS 549 (581)
Q Consensus 546 ~s~s 549 (581)
+.++
T Consensus 339 v~sn 342 (381)
T 3q6k_A 339 FMSN 342 (381)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6554
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.30 E-value=1.1e+02 Score=28.30 Aligned_cols=198 Identities=6% Similarity=-0.013 Sum_probs=106.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccc---CCe--e-eEE---EEecCCCCCEEEEEe-C--CCCCeEEEeeCCCc
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---DGQ--V-SLK---HRLSGHRKPVFTVSW-S--PNDHQLLTCGQEEA 340 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~---~~~--~-~~~---~~~~~h~~~V~~l~~-s--p~~~~l~s~~~dg~ 340 (581)
+.+..+........|+..+..|.++-..... .+. . ... ..+. ....|.++.. . .++.+++.++.+|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 3444444444555666677788876665532 110 0 000 0122 2334555543 2 34567889999999
Q ss_pred EEEEEcCC-------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC--------eEEeeccCccccEE
Q 008005 341 IRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--------ELESWKGQKTLRIS 405 (581)
Q Consensus 341 i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~~~~~i~ 405 (581)
++-..+.. |.....+... +.+..+....+...++..+.+|.+..++...- -...........|.
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv 199 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 199 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEE
Confidence 99987642 2111122233 45555555555667888889998888876321 01111112234566
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe-----------eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008005 406 DMAITDDGKRIISICREAAILLLDREANF-----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
.+....++..+++.+..|.++-.++..-. .......+.+..+....+...++..+.+|.+.-++...
T Consensus 200 ~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 200 SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 66655566778888999998887763211 11112224444443333344455556666665555543
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=58.24 E-value=2e+02 Score=30.85 Aligned_cols=149 Identities=9% Similarity=0.064 Sum_probs=73.6
Q ss_pred cCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcccCCeeeEEEEecC----CCCCEEEEEeCCC-CCeEEEeeCCCc----E
Q 008005 272 SDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG----HRKPVFTVSWSPN-DHQLLTCGQEEA----I 341 (581)
Q Consensus 272 ~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~----h~~~V~~l~~sp~-~~~l~s~~~dg~----i 341 (581)
.+.|.+|+++|. ...+..++..+.|...+ +.+..+..+..... ....|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 34556666666554433 22344433211010 1246999999984 344444432211 3
Q ss_pred EEEE-cCCCcEEEEEecC---------CCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCC-eEEeecc-----CccccE
Q 008005 342 RRWD-VNSGECLHVYEKT---------GVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGR-ELESWKG-----QKTLRI 404 (581)
Q Consensus 342 ~vwd-~~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~-~~~~~~~-----~~~~~i 404 (581)
.||. ...|+.-..+... ...+..+++.|. .+.++.+...+.|.. ..+.+ ....... .....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 3443 3344433333211 012456777774 345666654444432 22322 2222211 111357
Q ss_pred EEEEEeeC-CCEEEEEEcC
Q 008005 405 SDMAITDD-GKRIISICRE 422 (581)
Q Consensus 405 ~~i~~~~~-~~~l~~~~~d 422 (581)
..+.+.|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88888874 4466666554
No 373
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=57.03 E-value=17 Score=30.03 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=40.9
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcccccc
Q 008005 110 YWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQ 165 (581)
Q Consensus 110 ~w~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l~pl~ 165 (581)
-|+.....+..-.+.++..-+.+..+|.+..+++.++.|++.+|+..|+++.+-|.
T Consensus 73 Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASLP 128 (158)
T 1am7_A 73 XXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIXASLP 128 (158)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhccccccCC
Confidence 35444444333345566666678888889999999999999999999998876554
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.56 E-value=1.3e+02 Score=28.03 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=126.1
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCc-------EEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE----
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGE-------CLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE---- 394 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~---- 394 (581)
++..++++.+.+|.|+--.+..-+ -+..+. ...+.+..+........++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678888999999887664321 111111 12334445555556667888888898777665311000
Q ss_pred -------eeccCccccEEEEEEee---CCCEEEEEEcCCeEEEEECCCCe--------eeEEecCCceEEEEECCCCCEE
Q 008005 395 -------SWKGQKTLRISDMAITD---DGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYL 456 (581)
Q Consensus 395 -------~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~sp~~~~l 456 (581)
.........|..+...+ +..+++..+..|.++...+.... ...+.....+..+....+...+
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEE
Confidence 01111223455554433 46789999999999988774322 1112234556666555556678
Q ss_pred EEEeeCCcEEEEEecCCC------ceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC-------ceEE
Q 008005 457 LVNLINQEIHLWSIESDP------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-------ELVL 523 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-------~~~~ 523 (581)
+..+.+|.+..+....-+ .-+..+.-.. ....+.+... .++..+++.+..|..+..++..- +=+.
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v-~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~ 243 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSV-KENPYLLIVSENGYGKRLNMSKISELKRGATGYT 243 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEEC-TTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEE-CCCCeEEEEECCCceEEEEHHHhcccCCCCCCEE
Confidence 888999999888875421 1111222111 1222333332 34566888899999888876432 1112
Q ss_pred Ee--c-cCCCCEEEE-EEcCCCCcEEEEEECCCcEEEecCCccc
Q 008005 524 AL--A-GHSGSVNCV-SWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 524 ~~--~-~h~~~v~~l-~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.+ . ...+.+.++ .+.++. -+...+..|.+.-..+.+..
T Consensus 244 ~~~~~k~~~~~lv~~~~~~~~~--~l~~~t~~g~~~r~~~~~i~ 285 (312)
T 1suu_A 244 SYKKSDKKAGSVVDAIAVSEDD--EILLVSKRSKALRTVAGKVS 285 (312)
T ss_dssp CSCTTCTTTCSEEEEEEECTTC--EEEEEETTCEEEEEEGGGSC
T ss_pred eeEccCCCCCeEEEEEEeCCCC--EEEEEeCCCeEEEEEcccCC
Confidence 12 2 223445443 454443 45556667755444554443
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.76 E-value=32 Score=39.04 Aligned_cols=38 Identities=11% Similarity=0.329 Sum_probs=32.1
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEe
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556666788899999999999999999999988764
No 376
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=55.45 E-value=8.9 Score=30.61 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHhhcCC
Q 008005 64 SEFIKIITRALYSLGYD-KSGALLEEESGI 92 (581)
Q Consensus 64 ~e~~~lI~q~L~e~g~~-~s~~~l~~Esg~ 92 (581)
.++...|+..|.+.||- .+...+.++.|+
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~~ 51 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLRC 51 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcCC
Confidence 47888899999999985 344555555554
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=54.96 E-value=1.5e+02 Score=28.38 Aligned_cols=237 Identities=10% Similarity=0.025 Sum_probs=128.6
Q ss_pred eCCCCCeEEEeeCCCcEEEEEcCC---------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC---CC--
Q 008005 325 WSPNDHQLLTCGQEEAIRRWDVNS---------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL---DG-- 390 (581)
Q Consensus 325 ~sp~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~---~~-- 390 (581)
+-|+..++++.+.+|.|+--.+.+ |..-..++. ...+..+........++..+..|.++-+.. ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778899999999998765421 222223332 445555555556677888888887776654 21
Q ss_pred ----CeE-Eee-ccCccccEEEEEEee---CCCEEEEEEcCCeEEEEECCCCe--------eeEEecCCceEEEEECCCC
Q 008005 391 ----REL-ESW-KGQKTLRISDMAITD---DGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 391 ----~~~-~~~-~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~sp~~ 453 (581)
+.. ... .......|..+.... +..+++.++..|.++-..+.... ...+.....+..+......
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 111 111 111223566554432 45689999999999988754321 1112234455555555556
Q ss_pred CEEEEEeeCCcEEEEEecCCC------ceeEEEeccccceeEEEeeecC-------------------------------
Q 008005 454 KYLLVNLINQEIHLWSIESDP------KLVSRYKGHKRARFVIRSCFGG------------------------------- 496 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~~~~~------------------------------- 496 (581)
..++..+.+|.+..++...-+ .-++.+.-... ...+.+....
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~-d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKG-EEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-CCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCC-CEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 678888888888888764321 01111111111 1112221111
Q ss_pred ---CCCcEEEEEeCCCcEEEEeCCCC-------ceEE--EeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 497 ---FEQAFIASGSEDSQVYIWHRYTG-------ELVL--ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 497 ---~~~~~l~sgs~dg~I~iwd~~~~-------~~~~--~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
.++..+++.+..|..+...+..- +=+. .+....+.+..+.+..++ ..++..+..|.+.-..+.....
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~-d~i~liT~~G~~iR~~v~~i~~ 319 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGST-DEVMLISDGGTLVRTRGSEISR 319 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTT-CEEEEEETTCCEEEEEGGGSCB
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCC-ceEEEEcCCCeEEEeeHhhCCc
Confidence 14568899999999888875421 1122 222233456655444333 3555667777776666655443
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.74 E-value=49 Score=34.08 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=42.9
Q ss_pred EEEEEeCCCCCeEEEeeCC------------CcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEE
Q 008005 320 VFTVSWSPNDHQLLTCGQE------------EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAG 377 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg 377 (581)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999876654332 24566677788877666655 6789999999999888765
No 379
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=50.28 E-value=1.4e+02 Score=26.75 Aligned_cols=142 Identities=5% Similarity=-0.062 Sum_probs=79.0
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC---e---e-----eEEecC
Q 008005 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN---F---E-----RWIEEE 441 (581)
Q Consensus 373 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~---~-----~~~~~~ 441 (581)
..++.+.+|.|+--.................+..+........++..+..|.++-+....- . . ..+...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 3455667777766554332111111122335666666666667888888888776654221 1 1 112335
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCC------CceeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEe
Q 008005 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESD------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
..|.++....++.+++.++..|.++...+..- ......+... ...+.+......+..|+..+.+|.+..++
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~---d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN---AHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT---CCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC---CEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 56777654446677888999999999887431 1111122211 11222222212455788899999988887
Q ss_pred CC
Q 008005 516 RY 517 (581)
Q Consensus 516 ~~ 517 (581)
..
T Consensus 161 ~~ 162 (256)
T 1zvt_A 161 VS 162 (256)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=49.77 E-value=1.7e+02 Score=27.39 Aligned_cols=198 Identities=8% Similarity=0.034 Sum_probs=105.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEccc---CCe---eeEE---EEecCCCCCEEEE-EeCC--CCCeEEEeeCCCc
Q 008005 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---DGQ---VSLK---HRLSGHRKPVFTV-SWSP--NDHQLLTCGQEEA 340 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~---~~~---~~~~---~~~~~h~~~V~~l-~~sp--~~~~l~s~~~dg~ 340 (581)
+.+..+........|+..+..|.++-..... .+. -..+ ..+. ....|.++ ...+ ++.+++.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 4444544445556677777788876665532 110 0000 0122 22345554 3332 2567999999999
Q ss_pred EEEEEcCC------CcEEE--EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--------EEeeccCccccE
Q 008005 341 IRRWDVNS------GECLH--VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--------LESWKGQKTLRI 404 (581)
Q Consensus 341 i~vwd~~~------~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------~~~~~~~~~~~i 404 (581)
++...+.. +.-+. .+.. .+.+..+....+...++..+.+|.+..+....-. ...........|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99987742 11122 2222 2455555555556678889999998888763211 111111223356
Q ss_pred EEEEEeeCCC-EEEEEEcCCeEEEEECCCCe--------eeE---Eec-CCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008005 405 SDMAITDDGK-RIISICREAAILLLDREANF--------ERW---IEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 405 ~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~--------~~~---~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.++...+++. .+++.+..|..+..++..-. ... ... ...+..+....++..++..+.+|.+..+.+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6665555555 78888889888877764411 111 111 2244433222333445556666766555554
Q ss_pred C
Q 008005 472 S 472 (581)
Q Consensus 472 ~ 472 (581)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 3
No 381
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.64 E-value=2.6e+02 Score=29.56 Aligned_cols=234 Identities=12% Similarity=0.114 Sum_probs=115.9
Q ss_pred EEEEE-EcCCCCEEEEE-e----CCCeEEEEEcccCCeeeEEEEec-CCCC------CEEEEEeCCCCCeEEEe------
Q 008005 275 VWFLQ-FSHDGKYLASS-S----KDQSAIIWEVKEDGQVSLKHRLS-GHRK------PVFTVSWSPNDHQLLTC------ 335 (581)
Q Consensus 275 V~~l~-~s~~g~~lasg-s----~dg~i~iwd~~~~~~~~~~~~~~-~h~~------~V~~l~~sp~~~~l~s~------ 335 (581)
...+. ++|++++++.+ | .-..++++|+.++.-+. ..+. .-.. ....++|..++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~--~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK--NGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT--TCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC--CCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 33455 89999977754 2 22468999998752210 1111 0000 01344776444444432
Q ss_pred ----eCCCcEEEEEcCCCc--EEEEEecCCCeE-EEEEEecCCCe-----EEEEeC---CCcEEEEeCCC--CeEEeecc
Q 008005 336 ----GQEEAIRRWDVNSGE--CLHVYEKTGVGL-ISCGWFLDGGG-----IFAGMT---DKSICLWDLDG--RELESWKG 398 (581)
Q Consensus 336 ----~~dg~i~vwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~~-----l~sg~~---dg~i~vwd~~~--~~~~~~~~ 398 (581)
+....|+.|.+-+.. -...+......+ .+...++++++ +++.+. ...+.+.+.+. ++......
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 122468888876642 334454443332 33445566663 444332 24566667653 44444433
Q ss_pred CccccEEEEEEeeCCCEEEEE----------EcCCeEEEEECCCC------e---eeEEe--cCCceEEEEECCCCCEEE
Q 008005 399 QKTLRISDMAITDDGKRIISI----------CREAAILLLDREAN------F---ERWIE--EEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 399 ~~~~~i~~i~~~~~~~~l~~~----------~~dg~i~i~d~~~~------~---~~~~~--~~~~i~~~~~sp~~~~l~ 457 (581)
..... +....++..++.. ...+.|...|+.+. . ...+. ....+..+.+..+ ..++
T Consensus 289 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22212 2334455444422 24677899998763 1 22232 3345778888865 5666
Q ss_pred EEeeCCc--EEEEEecCCCceeEE-Eecc-ccceeEEEeeecCCCC-cEEEEEeC---CCcEEEEeCC
Q 008005 458 VNLINQE--IHLWSIESDPKLVSR-YKGH-KRARFVIRSCFGGFEQ-AFIASGSE---DSQVYIWHRY 517 (581)
Q Consensus 458 ~~~~d~~--i~iwd~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~-~~l~sgs~---dg~I~iwd~~ 517 (581)
+...++. +.++|+.++.-.... +... ... +.....++++ .++++.+. -+.++.+|..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~---~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNA---IFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTC---EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeE---EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666764 667776654111222 2221 122 2222223444 45554443 3578888876
No 382
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=49.27 E-value=1.6e+02 Score=27.17 Aligned_cols=234 Identities=7% Similarity=-0.027 Sum_probs=125.3
Q ss_pred CCCCeEEEeeCCCcEEEEEcCCCcEEE---------EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC---CC----
Q 008005 327 PNDHQLLTCGQEEAIRRWDVNSGECLH---------VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL---DG---- 390 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~---~~---- 390 (581)
|+...+++.+.+|.|+--.+.+-+... .++. .+.+..+........++..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888899998877665422111 1222 234444444455667888888888766654 21
Q ss_pred --CeEE-ee-ccCccccEEEEEEe---eCCCEEEEEEcCCeEEEEECCCCe------ee--EEecCCceEEEEECCCCCE
Q 008005 391 --RELE-SW-KGQKTLRISDMAIT---DDGKRIISICREAAILLLDREANF------ER--WIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 391 --~~~~-~~-~~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~i~d~~~~~------~~--~~~~~~~i~~~~~sp~~~~ 455 (581)
+... .. .......|..+... .+..+++.++..|.++-..+.... .. .....+.+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1111 01 11222356555442 356689999999999988764211 11 1123355555555555567
Q ss_pred EEEEeeCCcEEEEEecCCCc------eeEEEeccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCCCC---------c
Q 008005 456 LLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---------E 520 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---------~ 520 (581)
++..+.+|.+..++...-+. -+..+.-. .....+.... ..++..++..+..|.++-.++..- .
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~-~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIV-PRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEC-CCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEE-ecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 77888899888887754211 11111111 1122333332 234567888899999888875321 1
Q ss_pred eEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEEecCCcccc
Q 008005 521 LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 521 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
....+..-.+.+..+....+. ..++..+.+|.+.-..+.....
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~-~~l~~~t~~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDC-DQIMMITDAGTLVRTRVSEISI 280 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTT-CEEEEEESSCCEEEEEGGGSCB
T ss_pred EeeEecCCCCeEEEEEEeCCC-ceEEEEcCCCcEEEEecccccc
Confidence 112222233556555443333 3566777888877777766543
No 383
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=47.11 E-value=1.8e+02 Score=27.14 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=124.0
Q ss_pred CEEEEEeCCCeEEEEEcccC------CeeeEEEEecCCCCCEEEEEeCCCCCeEEEeeCCCcEEE---EEcCC------C
Q 008005 285 KYLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR---WDVNS------G 349 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v---wd~~~------~ 349 (581)
..+++.+.+|.|+--.+.+- +.-.....+. ..+.+..+........|+.-+..|.+.- |++.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 46677788888876553310 0000001111 2233444444444455665566676543 44432 2
Q ss_pred cEEEEE-e-cCCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCCCCe------EEeeccCccccEEEEEEeeCCCEEEE
Q 008005 350 ECLHVY-E-KTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLDGRE------LESWKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 350 ~~~~~~-~-~~~~~v~~~~~~~---~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~ 418 (581)
..+..+ . .....|..+...+ +...++..+.+|.|+-..+.... ...........+..+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 221111 1 1234455554433 57789999999999998874311 11122222345666666667778999
Q ss_pred EEcCCeEEEEECC--CCe--------e--eEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC------ceeEEE
Q 008005 419 ICREAAILLLDRE--ANF--------E--RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP------KLVSRY 480 (581)
Q Consensus 419 ~~~dg~i~i~d~~--~~~--------~--~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~ 480 (581)
.+..|.+..+... .-. . ..+.....|.++...+++.+++..+..|.++.-.+..-. .-+..+
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9999999888776 211 1 112345667777776677789999999999888764321 111112
Q ss_pred eccccceeEEEeeecCCCCcEEEEEeCCCcEEEEeCC
Q 008005 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 481 ~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.........+.+.... +...++..+.+|.+.-++..
T Consensus 243 ~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 2111111123222222 34456667777877777643
No 384
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=43.43 E-value=9.7 Score=27.45 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccC
Q 008005 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~ 95 (581)
++..++.+=|+++|+++| .|+..|.++-|++-.
T Consensus 13 ~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred cchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 577789999999999999 888999999887764
No 385
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=43.09 E-value=69 Score=24.68 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=53.3
Q ss_pred HHHHHhcChHHHHHHHHhhcCCccCCHHHHH--HHHHHHcCChHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHhc
Q 008005 71 TRALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKFLELLRR 147 (581)
Q Consensus 71 ~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~~--~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~~~q~~lell~~ 147 (581)
..|++...|.++...+++=-.+.-+....-. =.-....|+|++|+..+.+. .+.+. ... + + ... =.-+...
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~-a-~-~~l--g~~~~~~ 94 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIK-G-Y-IRK--AACLVAM 94 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-H-H-HHH--HHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhH-H-H-HHH--HHHHHHC
Confidence 4466666788888887765433333222211 12345679999999877753 22221 111 1 1 111 1123455
Q ss_pred CCHHHHHHHHhhcccccccChhhHHHhhhc
Q 008005 148 DKVSAALNSLRSEIVPLQINMSRVHELASC 177 (581)
Q Consensus 148 ~~~~~a~~~l~~~l~pl~~~~~~~~~l~~~ 177 (581)
+++.+|+..+++-+.--+.+.+-...|..+
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 889999999987653322333333344433
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.13 E-value=1.2e+02 Score=30.92 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=43.9
Q ss_pred CCEEEEEeCCCCCeEEEeeC------------CCcEEEEEcCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEe
Q 008005 318 KPVFTVSWSPNDHQLLTCGQ------------EEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~ 378 (581)
.....|.|.++|.+.++... ...+..++..+++....+... ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987773321 125667777778876666543 46789999999999988764
No 387
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=42.00 E-value=1.1e+02 Score=22.93 Aligned_cols=95 Identities=5% Similarity=-0.140 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHHHH--HHHHHcCChHHHHHHhhcC-CCCChhHHHHHHHHHH
Q 008005 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQF--MQQVMDGYWDESIITLHMI-GLSDETAVKSASFLIL 137 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~~ 137 (581)
.+......+-..++...-|.++...+++-....-+....-.. .-....|+|++|+..+... ...+... .+.+. +
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~-l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTR-K 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHH-H
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHH-H
Confidence 456677777788888888999998888866554443322221 1234678999999887753 1111111 11111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcc
Q 008005 138 EQKFLELLRRDKVSAALNSLRSEI 161 (581)
Q Consensus 138 ~q~~lell~~~~~~~a~~~l~~~l 161 (581)
- .-+...++..+|+..+++-+
T Consensus 91 a---~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 91 A---AALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp H---HHHHHTTCHHHHHHHHHHHH
T ss_pred H---HHHHHHhhHHHHHHHHHHHH
Confidence 1 12234588999999988654
No 388
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.99 E-value=55 Score=37.05 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=26.7
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008005 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 525 (581)
.++..++++-+.|++++||++.+++++.+.
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 567789999999999999999999988764
No 389
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.12 E-value=40 Score=35.50 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=30.5
Q ss_pred CEEEEEeCCCCCeEEEeeCCCcEEEEEcCCCcEEEEEec
Q 008005 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
.|.++.+ +..++++-+.|.++|+|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 367999999999999999999998887654
No 390
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.72 E-value=1e+02 Score=26.30 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCC-----hH---------HHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 008005 99 VNQFMQQVMDGY-----WD---------ESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEI 161 (581)
Q Consensus 99 ~~~~~~~i~~g~-----w~---------~~~~~l~~~~~~~~~~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l 161 (581)
+-+|..-|.+|+ +| .|+..++.++-..+.+...+.-+|.+|..+-.++.|+..+|-.+|+.-+
T Consensus 68 icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 68 ICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 556777777773 33 5778888887666688889999999999999999999999999999754
No 391
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=37.72 E-value=1.2e+02 Score=30.02 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.7
Q ss_pred ccccCcCCccHHHHHHHHHHHHHhcCh
Q 008005 53 EKIGSKGVIKKSEFIKIITRALYSLGY 79 (581)
Q Consensus 53 ~~~~~~~~~~~~e~~~lI~q~L~e~g~ 79 (581)
+.||..+.....|++.|+.+.|++.|+
T Consensus 152 ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 152 DIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp EEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred EEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 458888877778999999999999998
No 392
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=37.44 E-value=1.3e+02 Score=22.78 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=9.2
Q ss_pred EEEEEeCCCcEEEEe
Q 008005 501 FIASGSEDSQVYIWH 515 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd 515 (581)
+.++--.||.+.+|+
T Consensus 91 ~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 91 YVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred EEEEEcCCceEEEec
Confidence 445556667776665
No 393
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.97 E-value=2e+02 Score=25.98 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHHhh--cCCccCCHHHHHH--HHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHH
Q 008005 63 KSEFIKIITRALYSLG-YDKSGALLEEE--SGIPMHSSVVNQF--MQQVMDGYWDESIITLHMIGLSDETAVKSASFLIL 137 (581)
Q Consensus 63 ~~e~~~lI~q~L~e~g-~~~s~~~l~~E--sg~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (581)
.-+.++++.+++...| +..+...|++- .++.-+.+..... .-....|++++|+..+.. ++... +.+ .+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~---~~~-~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE---CMA-MT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH---HHH-HH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH---HHH-HH
Confidence 4467788888888887 78888888773 3332223332222 234578999999999888 22111 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcc
Q 008005 138 EQKFLELLRRDKVSAALNSLRSEI 161 (581)
Q Consensus 138 ~q~~lell~~~~~~~a~~~l~~~l 161 (581)
-.-++..|+..+|...+++-+
T Consensus 137 ---~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 ---VQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCHHHHHHHHHHHH
Confidence 111334578888888777543
No 394
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.89 E-value=84 Score=33.10 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=26.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEecc
Q 008005 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 527 (581)
.+..++++-+.|.++|+|++.+++++....-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999998876543
No 395
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=35.08 E-value=4.3e+02 Score=27.91 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=35.9
Q ss_pred CEEEEEeCCCC-CeEEEeeCCCcEEEEEcCCCcEEEEEecC-------CCeEEEEEEec-CCCeEEEEe
Q 008005 319 PVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKT-------GVGLISCGWFL-DGGGIFAGM 378 (581)
Q Consensus 319 ~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~sg~ 378 (581)
.|..|+++|.. ..++++...+.|..++ ..|+.-..+..+ ...+.++++.| +.+.++++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 78999999953 5566666566665554 334433333221 24588999998 445555554
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.67 E-value=1.7e+02 Score=29.90 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=42.4
Q ss_pred ccEEEEEEeeCCCEEEEEEc------------CCeEEEEECCCCee-eEEe--cCCceEEEEECCCCCEEEEEee
Q 008005 402 LRISDMAITDDGKRIISICR------------EAAILLLDREANFE-RWIE--EEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 402 ~~i~~i~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~-~~~~--~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
.....+.|.++|...++... ...+..++..++.. .+.. ....++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 35778999999987774432 12677778776663 3332 2357899999999999888654
No 397
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.36 E-value=21 Score=24.45 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccccCCCcCCcccccCCcccccccccccccccCCCCCCCccccccCcCCccHHHHHHHHHHHHHh
Q 008005 1 MGGIEESEPPLKRAKGPVAESKNLAEDSSVKESSVCSLGDVMARPLTSQGDEEKIGSKGVIKKSEFIKIITRALYS 76 (581)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~lI~q~L~e 76 (581)
||| +.-|+..|-| .+...+-+.+..+....|.. ....-+++-|++++...|...
T Consensus 11 ~~~--~~~~a~erER---~Rm~~lN~aF~~LR~~VP~~-----------------p~~kKLSKiEtLr~Ai~YI~~ 64 (68)
T 2lfh_A 11 MGG--GKGPAAEEPL---SLLDDMNHCYSRLRELVPGV-----------------PRGTQLSQVEILQRVIDYILD 64 (68)
T ss_dssp SSC--CCCCCBCCCS---CSSSHHHHHHHHHHHHCCCC-----------------CTTCCCCHHHHHHHHHHHHHH
T ss_pred cCC--CCCCccHHHH---HHHHHHHHHHHHHHHHCCCC-----------------CCCCCccHHHHHHHHHHHHHH
Confidence 666 4446665554 34455556666655555521 111226888999999988654
No 398
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=32.65 E-value=33 Score=28.41 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHhcChHHHHH-----HHHhhcCCccC
Q 008005 62 KKSEFIKIITRALYSLGYDKSGA-----LLEEESGIPMH 95 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~g~~~s~~-----~l~~Esg~~~~ 95 (581)
+.++..+-|++||...||...+. -++.|||+...
T Consensus 13 ~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~ 51 (159)
T 3ct5_A 13 EMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 35567889999999999998875 57999996543
No 399
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.76 E-value=28 Score=18.33 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhc
Q 008005 64 SEFIKIITRALYSL 77 (581)
Q Consensus 64 ~e~~~lI~q~L~e~ 77 (581)
.||++||-||-+..
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999986653
No 400
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=31.31 E-value=2.8e+02 Score=24.71 Aligned_cols=112 Identities=6% Similarity=-0.050 Sum_probs=64.3
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeCC---C----CeEE-ee-ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICLWDLD---G----RELE-SW-KGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~---~----~~~~-~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
.+..+........++..+..|.++-+... . +... .. .......|..+....++.+++.++..|.++...+.
T Consensus 34 ~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 34 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 33344333445567777778876665442 1 1110 01 11122356666444566778899999999988764
Q ss_pred CCe--------eeEEecCCceEEEEEC-CCCCEEEEEeeCCcEEEEEecC
Q 008005 432 ANF--------ERWIEEEEVITSFSLS-KDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 432 ~~~--------~~~~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~ 472 (581)
.-. ...+.....+..+... .++..++..+.+|.+..++...
T Consensus 114 e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 114 DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 321 1112233455555554 3456788888899988888754
No 401
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=30.97 E-value=1.2e+02 Score=31.28 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=40.4
Q ss_pred cEEEEEEeeCCCEEEEEEcC------------CeEEEEECCCCee-eEE--ecCCceEEEEECCCCCEEEEEe
Q 008005 403 RISDMAITDDGKRIISICRE------------AAILLLDREANFE-RWI--EEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 403 ~i~~i~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~-~~~--~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
..-.|+|++.|+.+++-..+ ..+.+.+..++.. .+. .....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 35678999999866665432 3466667666662 222 3457899999999999888754
No 402
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=30.47 E-value=34 Score=23.18 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=31.1
Q ss_pred cCcCCc-cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCcc
Q 008005 56 GSKGVI-KKSEFIKIITRALYSLGYDKSGALLEEESGIPM 94 (581)
Q Consensus 56 ~~~~~~-~~~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~ 94 (581)
+.++.+ +|+.+.|||+--|.==||..-|..|..+-+..-
T Consensus 8 ~~~~~iK~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 8 DPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred CchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 444444 688899999998988899999999998877543
No 403
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=28.54 E-value=72 Score=26.89 Aligned_cols=60 Identities=3% Similarity=0.029 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHHHhcChHH-HHHHHHhhcCCccCC-----HHHHHHHHHHHcCChHHHHHHhhc
Q 008005 61 IKKSEFIKIITRALYSLGYDK-SGALLEEESGIPMHS-----SVVNQFMQQVMDGYWDESIITLHM 120 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 120 (581)
-.+++|+.--.+-+.+.||.. |...+-+++|++-.+ ++.+.+..+++.-.++.....+..
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 81 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITA 81 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999996 889999999997543 356666666666555555555443
No 404
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=28.36 E-value=1.9e+02 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=7.8
Q ss_pred EEEECCCCCEEEE
Q 008005 446 SFSLSKDNKYLLV 458 (581)
Q Consensus 446 ~~~~sp~~~~l~~ 458 (581)
.+.+..||++++.
T Consensus 54 ~L~l~~dGnLvL~ 66 (105)
T 4h3o_A 54 SAVLQSDGNFVVY 66 (105)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCccEEEE
Confidence 4566666665554
No 405
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=27.26 E-value=5.9e+02 Score=27.11 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=73.3
Q ss_pred CCCEEEEEeCCC-CCeEEEeeCCCcEEEEEcCCCcEEEEEecC-------CCeEEEEEEecC-CCeEEEEeCC------C
Q 008005 317 RKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKT-------GVGLISCGWFLD-GGGIFAGMTD------K 381 (581)
Q Consensus 317 ~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~l~sg~~d------g 381 (581)
.+.|.+|+++|. ...+++++..+.|...+ ..|+.-..+... ...+.++++.|. ...++++..+ +
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 45677777777665554 344443333321 236889999884 3455555432 2
Q ss_pred cEEEEeCCCCe-EEeeccC--------ccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe--eeEEe------cCCc
Q 008005 382 SICLWDLDGRE-LESWKGQ--------KTLRISDMAITDD-GKRIISICREAAILLLDREANF--ERWIE------EEEV 443 (581)
Q Consensus 382 ~i~vwd~~~~~-~~~~~~~--------~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~------~~~~ 443 (581)
.|. ...+.++ ....... ....+..+++.|. ...++++...+.|.. ....+. ..... ....
T Consensus 93 ~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFY-VSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEE-EESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEE-EECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 332 2233322 2221110 0013456788774 345555553444332 222222 11111 1245
Q ss_pred eEEEEECCC-CCEEEEEeeC
Q 008005 444 ITSFSLSKD-NKYLLVNLIN 462 (581)
Q Consensus 444 i~~~~~sp~-~~~l~~~~~d 462 (581)
+..+.++|. +..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788899884 4566666654
No 406
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=26.42 E-value=94 Score=24.87 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcccccccChhhHHHhhhc
Q 008005 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASC 177 (581)
Q Consensus 128 ~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l~pl~~~~~~~~~l~~~ 177 (581)
....+.|-+.-+-|++|+..|..++|..++.+--.-.....+.++.|+.+
T Consensus 29 EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~i~~L~~i 78 (138)
T 2j4b_A 29 DLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNKSEEIKQFESI 78 (138)
T ss_dssp HHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--CHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhHHHHHHHHhcC
Confidence 34457899999999999999999999999985321111114555555543
No 407
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.59 E-value=2e+02 Score=20.98 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCh-HHHHHHHHh
Q 008005 64 SEFIKIITRALYSLGY-DKSGALLEE 88 (581)
Q Consensus 64 ~e~~~lI~q~L~e~g~-~~s~~~l~~ 88 (581)
.|=-|.|++..++.|- .+++..+.+
T Consensus 38 Re~DR~IL~~cQ~~G~s~~tFa~iA~ 63 (95)
T 1ug2_A 38 READRVILTMCQEQGAQPHTFSVISQ 63 (95)
T ss_dssp HHHHHHHHHHHHHTTSCTTTHHHHHH
T ss_pred cccCHHHHHHHHhcCCChhHHHHHHH
Confidence 4778999999999986 444444433
No 408
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.31 E-value=3.9e+02 Score=24.05 Aligned_cols=199 Identities=11% Similarity=-0.010 Sum_probs=111.6
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeC---CCCeEEeeccCccccEEEEEEee--CCCEEEEEEcCCeEEEEECCCC--
Q 008005 361 GLISCGWFLDGGGIFAGMTDKSICLWDL---DGRELESWKGQKTLRISDMAITD--DGKRIISICREAAILLLDREAN-- 433 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~---~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~-- 433 (581)
.+..+.-......++.-+.+|.++.... .......+ ......|..+.. + +...++.++.+|.++-..+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4444444444556666667776654433 21111112 223345666644 4 4678999999999999886542
Q ss_pred ----e-eeEEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc------eeEEEeccccceeEEEeeecCCCCcEE
Q 008005 434 ----F-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 434 ----~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
. ...+.....+..+........++..+..|.+..++...-+. -+..+.-.. ....+.... ..++..+
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~-~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRI-WNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEE-ESSCSEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEE-eCCCCEE
Confidence 1 11123445666666666667888889999988887643211 111111111 122233333 2345688
Q ss_pred EEEeCCCcEEEEeCCC-------CceEEEeccCCCCEEEEEEcCCCCcEEEEEECCCcEEE--ecCCccccc
Q 008005 503 ASGSEDSQVYIWHRYT-------GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI--WGLDQINMK 565 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i--W~~~~~~~~ 565 (581)
+..+..|.++...+.. ++-+..+ ...+.+..+...... ..++..+.+|.+.. ++.++....
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~-~~i~~~t~~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEE-VELLITTKNGKAFYDKINQKDIPLS 250 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSE-EEEEEEETTSCEEEEEEEGGGSCBC
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCC-CEEEEEcCCCeEEEeeeCHHHCCCc
Confidence 8899999998887532 2223333 234455555433333 46777788888888 877655444
No 409
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.64 E-value=35 Score=23.11 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred ccCcCCccHHHHHHHHHHHHHhcChHH
Q 008005 55 IGSKGVIKKSEFIKIITRALYSLGYDK 81 (581)
Q Consensus 55 ~~~~~~~~~~e~~~lI~q~L~e~g~~~ 81 (581)
+...+.-.-.|++.||.+.|+.+||+.
T Consensus 54 isaendeqakelleliarllqklgykd 80 (96)
T 2jvf_A 54 ISAENDEQAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHTCSE
T ss_pred EEecChHHHHHHHHHHHHHHHHhCCCc
Confidence 444444456799999999999999964
No 410
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.54 E-value=3.6e+02 Score=23.37 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHhhcC---CCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcccccccChhhHHHhhhcccc
Q 008005 114 SIITLHMI---GLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIIS 180 (581)
Q Consensus 114 ~~~~l~~~---~~~~~~~~~~~~~~~~~q~~lell~~~~~~~a~~~l~~~l~pl~~~~~~~~~l~~~l~~ 180 (581)
|+..++.+ ...++.+...+.-+|.+|..+-.++++++.+|-.+|+.-+.--..+...-..|..++..
T Consensus 91 Al~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 91 AINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 44444433 34457788899999999999999999999999999997664322233333345555443
No 411
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.42 E-value=3.3e+02 Score=24.26 Aligned_cols=98 Identities=7% Similarity=-0.028 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHH---HH-----HHHHHcCChHHHHHHhhcC-CCCChhHHHHHHH
Q 008005 64 SEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVN---QF-----MQQVMDGYWDESIITLHMI-GLSDETAVKSASF 134 (581)
Q Consensus 64 ~e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~---~~-----~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~ 134 (581)
+++...+..++....|.++...+++.-.......... .+ .-....|++++|+..+... .............
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3556778888888999999887775543322221111 11 1124567999999886642 1111000000012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 008005 135 LILEQKFLELLRRDKVSAALNSLRSEI 161 (581)
Q Consensus 135 ~~~~q~~lell~~~~~~~a~~~l~~~l 161 (581)
.++-..-.-....+++.+|+..+++.+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223333333445688889988888755
No 412
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=22.24 E-value=1.2e+02 Score=20.94 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHHHHHhcChHHH-----HHHHHhhc-CCccC
Q 008005 60 VIKKSEFIKIITRALYSLGYDKS-----GALLEEES-GIPMH 95 (581)
Q Consensus 60 ~~~~~e~~~lI~q~L~e~g~~~s-----~~~l~~Es-g~~~~ 95 (581)
..+.+|+...|-+.|.+..+... -..|++.. |+.|.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs 52 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh
Confidence 45788999999999999887643 34688888 88887
No 413
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=21.82 E-value=34 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHhhcCC
Q 008005 64 SEFIKIITRALYSLGYD-KSGALLEEESGI 92 (581)
Q Consensus 64 ~e~~~lI~q~L~e~g~~-~s~~~l~~Esg~ 92 (581)
..+...|+..|.+.||- .+...+.++.|+
T Consensus 31 ~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~ 60 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLRC 60 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcCC
Confidence 47899999999999995 334444444443
No 414
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=21.34 E-value=50 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHHHHHHhcChHH
Q 008005 59 GVIKKSEFIKIITRALYSLGYDK 81 (581)
Q Consensus 59 ~~~~~~e~~~lI~q~L~e~g~~~ 81 (581)
..+.|.||+..|++|-+++++.+
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBC
T ss_pred cccCHHHHHHHHHHHHHhhcCcC
Confidence 45899999999999999999864
No 415
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.33 E-value=46 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHhcChHHH
Q 008005 61 IKKSEFIKIITRALYSLGYDKS 82 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~g~~~s 82 (581)
+..+|...-.++-|.|+||...
T Consensus 3 ~~~ee~~a~~L~~L~eMGF~D~ 24 (54)
T 2cp8_A 3 SGSSGQTAALMAHLFEMGFCDR 24 (54)
T ss_dssp CSSCTTHHHHHHHHHHHTCCCH
T ss_pred CCHHHhhHHHHHHHHHcCCCcH
Confidence 5566777778999999999543
No 416
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=21.04 E-value=2.3e+02 Score=20.14 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHHH--HHHHHHcCChHHHHHHhhcC-CCCChhHHHHHHHHHHHHHH
Q 008005 65 EFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQ--FMQQVMDGYWDESIITLHMI-GLSDETAVKSASFLILEQKF 141 (581)
Q Consensus 65 e~~~lI~q~L~e~g~~~s~~~l~~Esg~~~~~~~~~~--~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~~~q~~ 141 (581)
....+...++....|.++...+++=-...-+....-. =.-....|+|++|+..+... ...+... . +.+ ..-
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~----~~a 79 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-K-GYS----RKA 79 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H-HHH----HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-H-HHH----HHH
Confidence 4455566667777788888777764333322222111 12334679999999887753 1111111 1 111 111
Q ss_pred HHHHhcCCHHHHHHHHhhcc
Q 008005 142 LELLRRDKVSAALNSLRSEI 161 (581)
Q Consensus 142 lell~~~~~~~a~~~l~~~l 161 (581)
.-+...++..+|...+++-+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 11234588999999888654
No 417
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.78 E-value=1.3e+02 Score=22.52 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=23.4
Q ss_pred ccCcCCccHHHHHHHHHHHHHhcChHHHHH
Q 008005 55 IGSKGVIKKSEFIKIITRALYSLGYDKSGA 84 (581)
Q Consensus 55 ~~~~~~~~~~e~~~lI~q~L~e~g~~~s~~ 84 (581)
+.....+|..+|.+=|-++|...+..++.+
T Consensus 11 ~~~~~~ldTk~I~~~ike~L~~~~isQ~~F 40 (101)
T 1x2l_A 11 GAEEEQLDTAEIAFQVKEQLLKHNIGQRVF 40 (101)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCcCccCHHHHHHHHHHHHHHcCCCHHHH
Confidence 333344899999999999999998777543
Done!