BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008007
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M72|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M73|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M75|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M71|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7B|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7C|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7E|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M74|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M7L|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 11/196 (5%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G FGI LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFGIPLGLAALSLAWFHLENLFPAARX------VSDVLGIVASAVWILFILXYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLEL 335
+YFE VR EY PVR + F A + L + P IW +G F L
Sbjct: 64 RYYFEEVRAEYHSPVRFS-FIALIPITTXLVGDILYRWNPLIAEVLIWIGTIGQLLFSTL 122
Query: 336 KIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHYLVL 394
++ W G + K +PS +L +V NF A A +G+ ++G + G +++
Sbjct: 123 RVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGXIAWIIF 180
Query: 395 FVTLYQRLPTSEALPK 410
L Q L S P+
Sbjct: 181 EPVLLQHLRISSLEPQ 196
>pdb|3M77|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G F I LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFDIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M78|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G F I LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFDIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|3M76|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 217 PIGCFGICLGLSSQAVLWRAL-STSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKC 275
P G F I LGL++ ++ W L + PA + ++ L ++A AV I Y K
Sbjct: 10 PTGYFDIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKL 63
Query: 276 IFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGV---PPVVAPETLHPAIWCAFMGPYFF 332
+YFE VR EY PVR +F + M + + P++A E L IW +G F
Sbjct: 64 RYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIA-EVL---IWIGTIGQLLF 119
Query: 333 LELKIYGQWLSGGKRRLCKVANPSSHL-SVVGNFVGAILAAKVGWKEVGKFLWAVGFAHY 391
L++ W G + K +PS +L +V NF A A +G+ ++G + G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAW 177
Query: 392 LVLFVTLYQRLPTSEALPK 410
++ L Q L S P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 525 VWHTLFPNDLAIAITKKRLVKEKKPFKKAYDLRRWTKQALTKHNSANKDFD 575
+WH + D A+T +++ + + LR+ T++ + H AN+DFD
Sbjct: 251 IWHAII--DFKTALTASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFD 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,031,862
Number of Sequences: 62578
Number of extensions: 618344
Number of successful extensions: 1275
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 13
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)