Query 008007
Match_columns 581
No_of_seqs 183 out of 979
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 18:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10764 potassium-tellurite e 100.0 2.8E-55 6E-60 458.7 32.8 313 211-533 4-318 (324)
2 TIGR00816 tdt C4-dicarboxylate 100.0 2.1E-51 4.5E-56 427.9 31.1 302 216-525 1-319 (320)
3 PF03595 SLAC1: Voltage-depend 100.0 5.7E-51 1.2E-55 423.7 30.7 302 214-521 1-330 (330)
4 COG1275 TehA Tellurite resista 100.0 2.1E-44 4.5E-49 376.9 30.8 307 211-525 4-317 (329)
5 PF03595 SLAC1: Voltage-depend 98.1 0.00027 5.8E-09 74.1 19.6 227 295-521 7-268 (330)
6 TIGR00816 tdt C4-dicarboxylate 97.7 0.0057 1.2E-07 64.4 21.1 194 295-489 5-217 (320)
7 COG1275 TehA Tellurite resista 97.3 0.042 9.1E-07 58.7 21.9 197 249-457 102-308 (329)
8 PRK10764 potassium-tellurite e 97.2 0.044 9.5E-07 58.2 20.7 189 221-434 84-275 (324)
9 PF01528 Herpes_glycop: Herpes 91.8 23 0.0005 38.8 22.4 53 474-526 278-331 (374)
10 PRK11281 hypothetical protein; 85.9 59 0.0013 40.6 20.2 33 79-113 321-353 (1113)
11 PF13965 SID-1_RNA_chan: dsRNA 81.3 97 0.0021 36.0 18.4 138 287-433 364-505 (570)
12 PHA03237 envelope glycoprotein 77.9 1.2E+02 0.0027 33.8 24.7 52 474-525 295-353 (424)
13 PRK10929 putative mechanosensi 73.6 2.2E+02 0.0047 35.9 19.3 33 79-113 301-333 (1109)
14 PRK10263 DNA translocase FtsK; 58.9 3E+02 0.0064 35.3 16.4 25 380-404 73-99 (1355)
15 PRK11281 hypothetical protein; 57.5 4.9E+02 0.011 32.9 22.9 20 503-522 839-858 (1113)
16 COG1966 CstA Carbon starvation 57.3 2.7E+02 0.0058 32.4 14.6 55 322-376 4-82 (575)
17 PHA03242 envelope glycoprotein 53.1 3.8E+02 0.0082 30.2 22.0 51 474-524 292-349 (428)
18 PRK09776 putative diguanylate 53.1 4.6E+02 0.01 31.9 17.0 18 381-398 137-154 (1092)
19 PHA03239 envelope glycoprotein 49.6 4.3E+02 0.0093 29.8 22.3 49 477-525 304-359 (429)
20 PRK12657 putative monovalent c 45.3 2.2E+02 0.0047 25.7 9.4 77 383-461 9-85 (100)
21 PRK10929 putative mechanosensi 43.0 1.2E+02 0.0026 38.0 9.8 28 204-231 512-547 (1109)
22 PF05297 Herpes_LMP1: Herpesvi 42.5 8.2 0.00018 40.8 0.0 14 282-295 72-85 (381)
23 PF05297 Herpes_LMP1: Herpesvi 40.8 9.1 0.0002 40.4 0.0 8 466-473 131-138 (381)
24 PF12794 MscS_TM: Mechanosensi 40.6 5E+02 0.011 28.0 20.3 22 277-298 26-47 (340)
25 COG4956 Integral membrane prot 39.4 2.4E+02 0.0053 30.5 10.1 20 219-238 11-30 (356)
26 PF12794 MscS_TM: Mechanosensi 38.8 5.3E+02 0.011 27.8 13.2 51 250-300 82-139 (340)
27 PF13965 SID-1_RNA_chan: dsRNA 35.3 7.8E+02 0.017 28.7 17.8 53 499-557 484-537 (570)
28 PF03839 Sec62: Translocation 35.3 61 0.0013 33.2 4.9 55 217-278 106-164 (224)
29 PRK07948 putative monovalent c 35.1 3.1E+02 0.0067 24.0 9.7 74 386-461 7-80 (86)
30 PRK01021 lpxB lipid-A-disaccha 34.9 5.8E+02 0.013 30.1 13.1 51 320-370 8-58 (608)
31 PF06570 DUF1129: Protein of u 34.0 92 0.002 30.9 5.9 15 174-188 41-55 (206)
32 TIGR00807 malonate_madL malona 33.2 3.5E+02 0.0075 25.4 8.8 36 466-501 61-97 (125)
33 PF03248 Rer1: Rer1 family; I 32.2 2.1E+02 0.0045 28.4 7.8 56 207-274 96-153 (176)
34 PRK02983 lysS lysyl-tRNA synth 31.7 1.2E+03 0.025 29.6 17.9 27 301-333 62-88 (1094)
35 PF00558 Vpu: Vpu protein; In 30.8 41 0.0009 29.2 2.4 32 541-575 31-62 (81)
36 PF08229 SHR3_chaperone: ER me 29.7 1.1E+02 0.0024 30.8 5.5 51 219-272 63-113 (196)
37 COG3202 ATP/ADP translocase [E 29.4 9.3E+02 0.02 27.8 16.1 19 524-542 243-261 (509)
38 PRK12600 putative monovalent c 29.0 4.1E+02 0.0089 23.5 9.3 75 386-462 8-82 (94)
39 PF10225 DUF2215: Uncharacteri 28.5 4.6E+02 0.01 27.1 10.1 19 385-403 43-61 (249)
40 PF04246 RseC_MucC: Positive r 27.8 1E+02 0.0023 28.4 4.8 30 357-386 75-104 (135)
41 PRK09776 putative diguanylate 27.7 8.7E+02 0.019 29.5 13.9 16 318-333 135-150 (1092)
42 PF10943 DUF2632: Protein of u 27.5 1.5E+02 0.0032 28.8 5.8 35 440-474 33-67 (233)
43 PRK15015 carbon starvation pro 26.8 7.3E+02 0.016 29.7 12.1 56 321-376 34-113 (701)
44 PF01102 Glycophorin_A: Glycop 25.9 99 0.0022 28.8 4.2 29 249-277 64-92 (122)
45 COG5487 Small integral membran 25.9 1.5E+02 0.0033 23.7 4.5 37 218-269 11-47 (54)
46 PF07578 LAB_N: Lipid A Biosyn 25.2 67 0.0015 27.3 2.7 42 326-367 2-43 (72)
47 PF14851 FAM176: FAM176 family 25.1 1.7E+02 0.0036 28.4 5.7 16 480-495 4-19 (153)
48 TIGR00869 sec62 protein transl 25.0 2.5E+02 0.0054 29.0 7.2 55 217-278 114-172 (232)
49 PRK06161 putative monovalent c 24.7 4.8E+02 0.01 22.9 9.6 75 386-462 8-82 (89)
50 PRK01637 hypothetical protein; 24.5 7.2E+02 0.016 25.8 10.9 49 472-520 201-256 (286)
51 PLN02601 beta-carotene hydroxy 24.5 8.8E+02 0.019 25.9 11.9 213 91-340 3-228 (303)
52 PRK13108 prolipoprotein diacyl 24.0 6.4E+02 0.014 28.6 10.9 24 213-236 18-41 (460)
53 PF05251 UPF0197: Uncharacteri 22.5 1.9E+02 0.0041 25.0 4.9 50 405-454 8-71 (77)
54 COG1584 Predicted membrane pro 21.8 7E+02 0.015 25.4 9.4 46 413-458 53-98 (207)
No 1
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=100.00 E-value=2.8e-55 Score=458.70 Aligned_cols=313 Identities=23% Similarity=0.376 Sum_probs=285.6
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCc
Q 008007 211 PFLLRFPIGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPV 290 (581)
Q Consensus 211 ~~L~~fppawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv 290 (581)
.+++++|++|||++||++++|++|+.++ ..++.++.++++++++++++|++++++|++|+++||+++++|++||+
T Consensus 4 ~~~~~~p~~~f~~~mG~~gL~~~~~~~~-----~~~~~~~~i~~~~~~la~~l~~~l~~~~~~k~~~~p~~~~~el~hPv 78 (324)
T PRK10764 4 DKVLPLPAGYFGIVLGLIGLGFAWRYAA-----QLWPLPAWIGEALVALASIIWALLILAYLYKWIRFPESVLAELRHPV 78 (324)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHH-----HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHcCcc
Confidence 3568999999999999999999999865 46788889999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccch-HHHHh
Q 008007 291 RINFFFAPWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGN-FVGAI 369 (581)
Q Consensus 291 ~~sFf~T~~Ma~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~-~V~A~ 369 (581)
+++|++|++|++++++..+.++.. .++.++||+++++++++.++++.+++.++ +..+++||+|+||+||. +|++.
T Consensus 79 ~~~f~~t~~ms~~ll~~~~~~~~~--~~a~~lW~~g~~l~l~~~~~~~~~~~~~~--~~~~~~~PaW~ip~V~~~~v~~~ 154 (324)
T PRK10764 79 QSSFVSLIPITTMLVAIGLVPYSR--PLAVVLFSFGVVGQLAFAAWRTAGLWRGG--HPEEATTPGLYLPTVANNFVSAM 154 (324)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccCChhhhhccchhhhHHHh
Confidence 999999999999999998877532 57789999999999999888887777643 46899999999999965 79999
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhC-ChhHHHHHHHHHH
Q 008007 370 LAAKVGWKEVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYG-DLDGLSRTCYFIA 448 (581)
Q Consensus 370 ~Ga~lg~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g-~~d~~a~iL~g~g 448 (581)
+|+.+++++.++++||+|+++|+++++++++|+.+++++|++++|+++|++||+|++++||+.+.+ ..|.++.++|++|
T Consensus 155 a~~~~~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~~~~~~l~~~~ 234 (324)
T PRK10764 155 ALGALGYHDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVNGGEGDTLAKMLFGYG 234 (324)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 4678889999999
Q ss_pred HHHHHHHHHHHHhhhcCccccceeeeechhHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 008007 449 LFLYVSLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEHVPSVLTKGLALSLSFMSSAMVCVLFVSTLLHAFVWHT 528 (581)
Q Consensus 449 lf~~lllvv~i~~~~~~~Fs~~WWAfTFPLga~AlAT~~la~~~~s~~~~~La~vl~ilatli~~~vlv~Ti~~v~~~~~ 528 (581)
+|++++++...+++++.||+++|||||||++++++++.++++..++.++++++.+++++++++|++++++|++++++ ++
T Consensus 235 l~~~~~~l~~~~~~~~~~F~~swWAfTFPl~A~~~at~~l~~~~~~~~~~~la~~~~~~~~~~~~~v~~~tl~~~~~-g~ 313 (324)
T PRK10764 235 LLQLLFLLRLMPWILSQGFNASFWSFSFGVAALATTGLHLGHGSDNGFFHTLAVPLFIFANFIIALLLLRTLALLMQ-GK 313 (324)
T ss_pred HHHHHHHHHHHHHHcCCCCCccHHHHccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 99998766667777789999999999999999999999999999999999999999999999999999999998776 45
Q ss_pred cCCCc
Q 008007 529 LFPND 533 (581)
Q Consensus 529 Lfp~d 533 (581)
+++.+
T Consensus 314 l~~~~ 318 (324)
T PRK10764 314 LLVRT 318 (324)
T ss_pred ccCCC
Confidence 55443
No 2
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=100.00 E-value=2.1e-51 Score=427.87 Aligned_cols=302 Identities=20% Similarity=0.268 Sum_probs=267.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCcccccc
Q 008007 216 FPIGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRINFF 295 (581)
Q Consensus 216 fppawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~sFf 295 (581)
|||+||+++||||++|++|+.++. .++.++.++++++++++++|++++++|++|+++||+++++|++||++++|+
T Consensus 1 f~p~wF~~vMgtg~~s~~~~~~~~-----~~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~~p~~~~f~ 75 (320)
T TIGR00816 1 FPWGWFAIVLGTGGLALASLSYSF-----YLPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELKHPVLSSFI 75 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCChhhhhh
Confidence 689999999999999999998663 345668899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHhhhhhhc
Q 008007 296 FAPWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILAAKVG 375 (581)
Q Consensus 296 ~T~~Ma~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~~Ga~lg 375 (581)
+|++|++++++..+..+.. ..+..+||+++++++++.+.++..++++ +++..+++||+|+||+||+++++.+|+.++
T Consensus 76 ~t~~m~~~~l~~~~~~~~~--~~~~~lw~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~paw~lp~V~~~v~~~~~~~l~ 152 (320)
T TIGR00816 76 PLIPISTMLLGIDFIIWGY--PLALGLWYIGAIGQLLFSVIVPFYLFKN-ESIEIEHTHPGWYLPPVALIFISAAALAIL 152 (320)
T ss_pred hHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCCchhhhcccHHHHHHHHHHHhh
Confidence 9999999999988765432 3667899999999998887777777765 345689999999999999999999998765
Q ss_pred H---HHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCC--hhH-------H
Q 008007 376 W---KEVG---KFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGD--LDG-------L 440 (581)
Q Consensus 376 ~---~e~s---~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~--~d~-------~ 440 (581)
. .+.. +++||+|+++|+++++++++|+.+++.+|++.+|++||++||+|++++|++.+.++ .+. +
T Consensus 153 ~~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~ 232 (320)
T TIGR00816 153 PYLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIVNHGEFITIKEPFLIL 232 (320)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHhhccchhhhhhhHHHH
Confidence 2 2244 44599999999999999999999999999999999999999999999999996432 222 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--cCccccceeeeechhHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Q 008007 441 SRTCYFIALFLYVSLVVRINFFT--GFRFSVAWWSYTFPMTTASVATIKYAEHVPSVLTKGLALSLSFMSSAMVCVLFVS 518 (581)
Q Consensus 441 a~iL~g~glf~~lllvv~i~~~~--~~~Fs~~WWAfTFPLga~AlAT~~la~~~~s~~~~~La~vl~ilatli~~~vlv~ 518 (581)
+.++|++|+||+++++....++. +.||+++|||||||+|++++||+++++..+++++++++.++.++++++|++++++
T Consensus 233 a~~l~~~~~~~~~~~~~~~~~~~~~~~~F~~~wWA~tFPlg~~a~at~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 312 (320)
T TIGR00816 233 AIILWGFGLWQLLFAIRLLLWYVKLKLPFAMGWWAFIFPLAAYANSTHLVYKGFDFKVFQYIGFGLYVFLNFFWAILLIR 312 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHcChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998887654443 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 008007 519 TLLHAFV 525 (581)
Q Consensus 519 Ti~~v~~ 525 (581)
|++++++
T Consensus 313 tl~~~~~ 319 (320)
T TIGR00816 313 TVNKLYV 319 (320)
T ss_pred HHHHHhc
Confidence 9998775
No 3
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=100.00 E-value=5.7e-51 Score=423.71 Aligned_cols=302 Identities=25% Similarity=0.412 Sum_probs=252.4
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCcccc
Q 008007 214 LRFPIGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRIN 293 (581)
Q Consensus 214 ~~fppawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~s 293 (581)
||+||+||+++||||++|++|+.+++ ..+.+..++.+++++++++|++++++|++|+++||+.+++|++||.+++
T Consensus 1 k~~~~~~f~~~mGtg~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el~~p~~~~ 75 (330)
T PF03595_consen 1 KHFPPAWFGMVMGTGGLSNLLYLLPY-----HFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAELRHPVRSS 75 (330)
T ss_dssp --S-GGGGHHHHHHHHHHHHHHTTTT-----TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcccc
Confidence 68999999999999999999998774 2566789999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhccCCCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHhhh
Q 008007 294 FFFAPWVVCMFLAIGVPPVVA--PETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILA 371 (581)
Q Consensus 294 Ff~T~~Ma~mlLa~~l~~~~~--p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~~G 371 (581)
|++|++|++++++..+..+.. ...+..++||+++++++++.+.++..|+.++ +++.+++||+|+||+||+++++++|
T Consensus 76 f~~t~~m~~~~l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~p~w~lp~Vg~~v~~~~g 154 (330)
T PF03595_consen 76 FFPTFPMALMLLAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQ-PFKLEHINPSWFLPPVGIMVSAVAG 154 (330)
T ss_dssp GGGHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-S-SS-GGG--GGGHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccC-cccccccceeeeecchhHHHHHHHH
Confidence 999999999999998887641 2368899999999999999888888887753 4568899999999999999999999
Q ss_pred hhhc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCC-----
Q 008007 372 AKVG----------WKEVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGD----- 436 (581)
Q Consensus 372 a~lg----------~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~----- 436 (581)
+.++ ..+.++++|++|+++|+++++++++|++.++.+|++..|++||++||+|++++|++.+.+.
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~ 234 (330)
T PF03595_consen 155 ANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFP 234 (330)
T ss_dssp HHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------
T ss_pred HHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccc
Confidence 9987 5778999999999999999999999999999999999999999999999999999999742
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHhh-hc-CccccceeeeechhHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 008007 437 ---------LDGLSRTCYFIALFLYVSLVVRINFF-TG-FRFSVAWWSYTFPMTTASVATIKYAEHVPSVLTKGLALSLS 505 (581)
Q Consensus 437 ---------~d~~a~iL~g~glf~~lllvv~i~~~-~~-~~Fs~~WWAfTFPLga~AlAT~~la~~~~s~~~~~La~vl~ 505 (581)
.+.++.++|+++++|+++++....+. ++ ++|+++|||||||++++++|+.++++..+++++++++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~F~~~~Wa~tFP~~~~a~at~~l~~~~~~~~~~~~~~~~~ 314 (330)
T PF03595_consen 235 PHGQILRGVADLFALLLWGFALWWFFLALLSLIRYLRRRLPFSPSWWAFTFPLGAFALATLKLAQYLGSPFFRVLGLILL 314 (330)
T ss_dssp ------TT---HHHHHHHHHHHHHHHHHHHHHHHHTTT-----GGGGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHhChHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34578899999999999888765443 32 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008007 506 FMSSAMVCVLFVSTLL 521 (581)
Q Consensus 506 ilatli~~~vlv~Ti~ 521 (581)
++++++|++++++|+|
T Consensus 315 ~~~~~~~~~v~~~tlr 330 (330)
T PF03595_consen 315 VLATLIWIYVLVRTLR 330 (330)
T ss_dssp HHHHHHHHH-------
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999999985
No 4
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=376.93 Aligned_cols=307 Identities=21% Similarity=0.276 Sum_probs=273.8
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCc
Q 008007 211 PFLLRFPIGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPV 290 (581)
Q Consensus 211 ~~L~~fppawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv 290 (581)
.+++++|++||+++||||++|++|+.++. ...+...++.++..+++++|+++.+++++|++.||+.+++|++||+
T Consensus 4 ~~~~~~~~~~f~~~mg~~~~gl~~~~~~~-----~~~~l~~~s~vl~~~~~~i~~l~~~~~i~k~i~y~~~~~~~l~~pv 78 (329)
T COG1275 4 DKIRNFPPSWFASVMGTGGLGLALGLFSF-----SFLLLRTLSYVLFYFALAIFFLLLIVWILKLIKYPNTVIADLNHPV 78 (329)
T ss_pred cccccCCHHHHhhcccHHHHHHHHHHhhh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHcCcH
Confidence 46789999999999999999999999763 1234578999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhcc-CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHh
Q 008007 291 RINFFFAPWVVCMFLAIGV-PPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAI 369 (581)
Q Consensus 291 ~~sFf~T~~Ma~mlLa~~l-~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~ 369 (581)
.++|++|++|++|+++..+ ..+ ...++.++||+++++++++..++.+..+.+ +..+.++++|+|++|+||++++++
T Consensus 79 ~~sf~~t~~ia~~~~~~~~~~~~--~~~~~~~lW~~~~~~~l~f~~~~~y~~~~~-~~~~~~~~~Psw~lP~V~~~v~s~ 155 (329)
T COG1275 79 VSSFVPTFPIATMLLSSYLLYPG--LPLLAYVLWWFGVALQLFFSAWFIYSLFRG-KKFELETITPSWFLPPVGIIVASL 155 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCccceeccccHHHHHHH
Confidence 9999999999999999884 332 236889999999999998875444443333 235689999999999999999999
Q ss_pred hhhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHh--CChhHHHHHHH
Q 008007 370 LAAKVGW--KEVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIY--GDLDGLSRTCY 445 (581)
Q Consensus 370 ~Ga~lg~--~e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~--g~~d~~a~iL~ 445 (581)
+++.++. .+.+++++++|+..|+++++++++|+.++..+|++.+|+.||.+||+|+.++++..+. +..+.++.++|
T Consensus 156 t~~~~~~~~~~~~~~~~~~g~~~~l~l~~iv~~r~~~~~~lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~ 235 (329)
T COG1275 156 TASVLLGAYFVIGYVFFGAGFFSYLVLFPIVLYRLFTAGLLPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILW 235 (329)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 9998876 7889999999999999999999999999999999999999999999999999998876 45667899999
Q ss_pred HHHHHHHHHHHHHHHh-hhcCccccceeeeechhHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008007 446 FIALFLYVSLVVRINF-FTGFRFSVAWWSYTFPMTTASVATIKYAEHVPSVLTKGLALSLSFMSSAMVCVLFVS-TLLHA 523 (581)
Q Consensus 446 g~glf~~lllvv~i~~-~~~~~Fs~~WWAfTFPLga~AlAT~~la~~~~s~~~~~La~vl~ilatli~~~vlv~-Ti~~v 523 (581)
++|++++++++....+ ..+.||+++|||||||++++++++.++++..+...+++++..+.++++++|++++++ |+++.
T Consensus 236 g~g~~~~~~~~~~~~~~~l~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~lv~~t~~~~ 315 (329)
T COG1275 236 GFGLLFLFFALLLLLRVLLRLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVLLVAYTIRAI 315 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887766 788999999999999999999999999999999999999999999999999999999 65554
Q ss_pred Hh
Q 008007 524 FV 525 (581)
Q Consensus 524 ~~ 525 (581)
.+
T Consensus 316 ~k 317 (329)
T COG1275 316 RK 317 (329)
T ss_pred HH
Confidence 43
No 5
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=98.09 E-value=0.00027 Score=74.10 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=138.3
Q ss_pred cchHHHHHHHHHhccCCC----CCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccccCcccccccc--chHH
Q 008007 295 FFAPWVVCMFLAIGVPPV----VAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKR--RLCKVANPSSHLSVV--GNFV 366 (581)
Q Consensus 295 f~T~~Ma~mlLa~~l~~~----~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~--~~~~~~nPSWfLpvV--G~~V 366 (581)
+++..||+..++...... ..+..+..+++++++++.+++......+++..++. .+.++..-+.+++.. +.++
T Consensus 7 ~f~~~mGtg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el~~p~~~~f~~t~~m~~~~ 86 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLYLLPYHFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAELRHPVRSSFFPTFPMALML 86 (330)
T ss_dssp GGHHHHHHHHHHHHHHTTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSTTGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 466778887777655411 11124677889888888777654444455554432 233444555555433 4444
Q ss_pred HHhhhhhhc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCcchhHHHHhhHHHHHHHHHHHHhCC------
Q 008007 367 GAILAAKVG---WKEVGKFLWAVGFAHYLVLFVTLYQRLPTSE-ALPKELHPVYSMFIAAPSAASIAWQAIYGD------ 436 (581)
Q Consensus 367 ~A~~Ga~lg---~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~-~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~------ 436 (581)
.+.....++ ....+..+|.+|.++.+++...++++.+.++ ...++..|+.+++.-++.+++.+...+.+.
T Consensus 87 l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~w~lp~Vg~~v~~~~g~~l~~~~~~~~~ 166 (330)
T PF03595_consen 87 LAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQPFKLEHINPSWFLPPVGIMVSAVAGANLGPALPGAQA 166 (330)
T ss_dssp HHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-SSS-GGG--GGGHHHHTHHHHHHHHHHHHTT-------
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccCcccccccceeeeecchhHHHHHHHHHHhhhccchhhH
Confidence 444334443 4567889999999999999888888887654 567889999999988888888887777642
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHH--HHhh-hc---CccccceeeeechhHHHHHHHHHHHHhcC---------hhhHHH
Q 008007 437 --LDGLSRTCYFIALFLYVSLVVR--INFF-TG---FRFSVAWWSYTFPMTTASVATIKYAEHVP---------SVLTKG 499 (581)
Q Consensus 437 --~d~~a~iL~g~glf~~lllvv~--i~~~-~~---~~Fs~~WWAfTFPLga~AlAT~~la~~~~---------s~~~~~ 499 (581)
....+.++|++|+++++.+... .+.. .+ ..-.|+.|=+.=|.+..+.|-..+++... ......
T Consensus 167 ~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 246 (330)
T PF03595_consen 167 LWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFPPHGQILRGVADL 246 (330)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------------TT---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccchhhhccccHHHH
Confidence 2346778899999888876542 2222 22 34778899899999888888888876411 123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008007 500 LALSLSFMSSAMVCVLFVSTLL 521 (581)
Q Consensus 500 La~vl~ilatli~~~vlv~Ti~ 521 (581)
++.++..++.....+..+..++
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~ 268 (330)
T PF03595_consen 247 FALLLWGFALWWFFLALLSLIR 268 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444443
No 6
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=97.68 E-value=0.0057 Score=64.41 Aligned_cols=194 Identities=19% Similarity=0.125 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHhccC--C--CCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--cccccCcccccccc--chHH
Q 008007 295 FFAPWVVCMFLAIGVP--P--VVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRR--LCKVANPSSHLSVV--GNFV 366 (581)
Q Consensus 295 f~T~~Ma~mlLa~~l~--~--~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~--~~~~~nPSWfLpvV--G~~V 366 (581)
+++..||+-.++.... + +.....++.++|+++.++.+++......+++..+++. +.++..-+.+++.+ |.++
T Consensus 5 wF~~vMgtg~~s~~~~~~~~~~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~~p~~~~f~~t~~m~~~~ 84 (320)
T TIGR00816 5 WFAIVLGTGGLALASLSYSFYLPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELKHPVLSSFIPLIPISTML 84 (320)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCChhhhhhhHHHHHHHH
Confidence 5677788887766552 1 1111246788999888887776544444555444332 23344444444433 2222
Q ss_pred HHhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCcchhHHHHhhHHHHHHHHHHHHhCChh-HHH---
Q 008007 367 GAILAAKVGWKEVGKFLWAVGFAHYLVLFVTLYQRLPTSE-ALPKELHPVYSMFIAAPSAASIAWQAIYGDLD-GLS--- 441 (581)
Q Consensus 367 ~A~~Ga~lg~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~-~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~~d-~~a--- 441 (581)
.+..-...+ ...+..+|.+|.++.+.+...+.+++.+++ ...++..|+.+++.-++.+++.+...+.+..+ ...
T Consensus 85 l~~~~~~~~-~~~~~~lw~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~paw~lp~V~~~v~~~~~~~l~~~~~~~~~~~~ 163 (320)
T TIGR00816 85 LGIDFIIWG-YPLALGLWYIGAIGQLLFSVIVPFYLFKNESIEIEHTHPGWYLPPVALIFISAAALAILPYLTHELTVLF 163 (320)
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhcccHHHHHHHHHHHhhccccHHHHHHH
Confidence 222112222 225567888999988877777777777665 45677889999987777666665555443222 112
Q ss_pred HHHHHHHHHHHHHHHHH--HHhh-h---cCccccceeeeechhHHHHHHHHHHH
Q 008007 442 RTCYFIALFLYVSLVVR--INFF-T---GFRFSVAWWSYTFPMTTASVATIKYA 489 (581)
Q Consensus 442 ~iL~g~glf~~lllvv~--i~~~-~---~~~Fs~~WWAfTFPLga~AlAT~~la 489 (581)
.+++++|+++++.+... .|.. . .....|+.|=..=|.+..+.|-..+.
T Consensus 164 ~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~ 217 (320)
T TIGR00816 164 YFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIV 217 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHh
Confidence 34478887777765532 2322 2 23488999999999988888887753
No 7
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.042 Score=58.75 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=119.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCccccccchHHHHHHHHHhccCCCCC-ccchHHHHHHHHH
Q 008007 249 PPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRINFFFAPWVVCMFLAIGVPPVVA-PETLHPAIWCAFM 327 (581)
Q Consensus 249 ~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~sFf~T~~Ma~mlLa~~l~~~~~-p~~l~~vlW~igv 327 (581)
...++.++|.+++++-+++.+.+..+.++. -.-+++|..-+-+.+.+++. +.+........ .......++++++
T Consensus 102 ~~~~~~~lW~~~~~~~l~f~~~~~y~~~~~---~~~~~~~~~Psw~lP~V~~~--v~s~t~~~~~~~~~~~~~~~~~~g~ 176 (329)
T COG1275 102 LPLLAYVLWWFGVALQLFFSAWFIYSLFRG---KKFELETITPSWFLPPVGII--VASLTASVLLGAYFVIGYVFFGAGF 176 (329)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccccCccceeccccHHH--HHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 367889999999777666665555554432 12355666666666665443 33322222111 0235667788888
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccCccccccccc--hHHHHhhhhhh-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 328 GPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVG--NFVGAILAAKV-G-WKEVGKFLWAVGFAHYLVLFVTLYQRLP 403 (581)
Q Consensus 328 al~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG--~~V~A~~Ga~l-g-~~e~s~~~fgiGl~lylvI~~ii~~RL~ 403 (581)
...+++...++.+.++.. ..+..+.|+-.+.... ...++.....- + ....+.++||+|...+++.......+.
T Consensus 177 ~~~l~l~~iv~~r~~~~~--~lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~g~g~~~~~~~~~~~~~~~- 253 (329)
T COG1275 177 FSYLVLFPIVLYRLFTAG--LLPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILWGFGLLFLFFALLLLLRVL- 253 (329)
T ss_pred HHHHHHHHHHHHHHHHcc--CCCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 877776554555555322 2355667766654443 33333222221 1 345788889999999988877776622
Q ss_pred cCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCC-----hhHHHHHHHHHHHHHHHHHHH
Q 008007 404 TSEALPKELHPVYSMFIAAPSAASIAWQAIYGD-----LDGLSRTCYFIALFLYVSLVV 457 (581)
Q Consensus 404 ~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~-----~d~~a~iL~g~glf~~lllvv 457 (581)
......|+.|-+.=|.+..+.+-..+... ++.++..++.++.+...++++
T Consensus 254 ----l~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~lv 308 (329)
T COG1275 254 ----LRLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVLLV 308 (329)
T ss_pred ----hcCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999998888877542 345666666666666555544
No 8
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=97.21 E-value=0.044 Score=58.16 Aligned_cols=189 Identities=13% Similarity=-0.001 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCccccccchHHH
Q 008007 221 FGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRINFFFAPWV 300 (581)
Q Consensus 221 FgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~sFf~T~~M 300 (581)
.+..|++-.+++.++.+ ...++.++|++++++-+++.+.+..+++.+. .+..|-.-+.|++.++.
T Consensus 84 ~t~~ms~~ll~~~~~~~-----------~~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~----~~~~~~~PaW~ip~V~~ 148 (324)
T PRK10764 84 SLIPITTMLVAIGLVPY-----------SRPLAVVLFSFGVVGQLAFAAWRTAGLWRGG----HPEEATTPGLYLPTVAN 148 (324)
T ss_pred hHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccCChhhhhccchh
Confidence 34556666666666542 2457788888888776666555555554442 45666556666655522
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHhhhhhhc---HH
Q 008007 301 VCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILAAKVG---WK 377 (581)
Q Consensus 301 a~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~~Ga~lg---~~ 377 (581)
.. +.+...... .....+..+|++|....+++...++.+.+.+ ....+..-|+.+|..-+.-++..+--.++ ..
T Consensus 149 ~~-v~~~a~~~~-~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~--~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~ 224 (324)
T PRK10764 149 NF-VSAMALGAL-GYHDAGLLFLGAGVFSWLSLEPVILQRLRSS--GELPTALRPSLGIQLAPAFVGCSAYLSVNGGEGD 224 (324)
T ss_pred hh-HHHhhcccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHhhHHHHHHHHHHHcCcchh
Confidence 21 111111111 1124778889999888877765556665553 23466777887776555544444332232 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHh
Q 008007 378 EVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIY 434 (581)
Q Consensus 378 e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~ 434 (581)
..+.++|++|++.++++... +-|+. ..+..|+.|=+.=|.+....+-..+.
T Consensus 225 ~~~~~l~~~~l~~~~~~l~~-~~~~~-----~~~F~~swWAfTFPl~A~~~at~~l~ 275 (324)
T PRK10764 225 TLAKMLFGYGLLQLLFLLRL-MPWIL-----SQGFNASFWSFSFGVAALATTGLHLG 275 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHc-----CCCCCccHHHHccHHHHHHHHHHHHH
Confidence 45678899998877643211 11211 23577899988888877777766664
No 9
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=91.79 E-value=23 Score=38.82 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=43.9
Q ss_pred eechhHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008007 474 YTFPMTTASVATIKYAEHV-PSVLTKGLALSLSFMSSAMVCVLFVSTLLHAFVW 526 (581)
Q Consensus 474 fTFPLga~AlAT~~la~~~-~s~~~~~La~vl~ilatli~~~vlv~Ti~~v~~~ 526 (581)
.-+-.++..+++.+|.+.+ ...+...+...+.+++++..+...++.+|.-..+
T Consensus 278 ~lia~~~l~~p~~~Y~~~f~~~~~~~~i~~~la~i~~i~l~~~vvR~vR~~~~h 331 (374)
T PF01528_consen 278 TLIACGILGLPAIRYENRFVAANLHTGIAINLAVIAIICLIMMVVRLVRAFLYH 331 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888899999888 6778888999999999999999999999876654
No 10
>PRK11281 hypothetical protein; Provisional
Probab=85.91 E-value=59 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=20.5
Q ss_pred ccccccceeeccccceeeccccccccccccccCCC
Q 008007 79 HNKTFSRQVSLETGFSVLNRESKAKDDRRVLPRSG 113 (581)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (581)
.+|+..-|++.-.|=.+|+|-=. ..+..||-..
T Consensus 321 ~~~~i~eqi~~l~~s~~l~~~l~--~q~~~LP~~~ 353 (1113)
T PRK11281 321 SERNIKEQISVLKGSLLLSRILY--QQQQALPSAD 353 (1113)
T ss_pred HHHHHHHHHHHhcccHHHHHHHH--HHHHhCCCCc
Confidence 35777788888888778776422 2233566543
No 11
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=81.30 E-value=97 Score=35.97 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=57.6
Q ss_pred cCCcc-ccccchHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchH
Q 008007 287 FHPVR-INFFFAPWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNF 365 (581)
Q Consensus 287 ~hPv~-~sFf~T~~Ma~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~ 365 (581)
+||.. ++-+.++.+-.+++..++..... -..++|++..+++++..+.+-.+...-++.+....+- +++-.+.|.
T Consensus 364 RH~di~a~a~~~f~~~av~i~~~~~gv~~---~~~~f~iiF~ii~i~~~~~ls~q~Yy~g~~~~~~r~~--~l~~~i~N~ 438 (570)
T PF13965_consen 364 RHPDINASAYAAFAVFAVVIFLGLIGVLE---KSSIFWIIFSIIHILSCFFLSLQIYYMGRWKLKSRFF--LLVLNIINW 438 (570)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHhhhhee---ccceehhHHHHHHHHHHHHHHhhheeeeeccccchhh--hhhHHHHHH
Confidence 57765 44445553333322222222211 1237888877777766443322322212221101110 011134444
Q ss_pred HHHhhhhhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHH
Q 008007 366 VGAILAAKVGWKEVGKFLW---AVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAI 433 (581)
Q Consensus 366 V~A~~Ga~lg~~e~s~~~f---giGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L 433 (581)
..++.|-.......+.++. -.=+++|++.+. ..++..++... .+|-..+.++-.+.+++.|.-+
T Consensus 439 ~~~~~gl~~~~~df~~~~l~i~i~n~~lY~~fYi--imKi~~~E~i~--~~~~~~~~~~~~~W~~a~yff~ 505 (570)
T PF13965_consen 439 ALAIYGLISSPRDFASFLLAIFIGNLLLYLFFYI--IMKIRHREKIL--LKPIIYLVLAFVSWGFALYFFF 505 (570)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH--HHHHhhcChhH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443332223343333 333444444433 33444444332 4455555555555555555544
No 12
>PHA03237 envelope glycoprotein M; Provisional
Probab=77.85 E-value=1.2e+02 Score=33.85 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=38.9
Q ss_pred eechhHHHHHHHHHHHHhc-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 474 YTFPMTTASVATIKYAEHV-------PSVLTKGLALSLSFMSSAMVCVLFVSTLLHAFV 525 (581)
Q Consensus 474 fTFPLga~AlAT~~la~~~-------~s~~~~~La~vl~ilatli~~~vlv~Ti~~v~~ 525 (581)
.-+-.++..+++.+|.+.+ ...+...+...+.+++++.++...++.+|....
T Consensus 295 ~lia~~~l~~p~~~Y~~~f~~~v~~~~~~l~~~v~~~Laviail~l~m~vvRlvRa~~y 353 (424)
T PHA03237 295 LLIAYGMLAVTTHDYFNRFYYAVGVQAPNLRLACKLVLAIFAVIIVIMLVVRLVRACLY 353 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888766 455677788888888888888888888876443
No 13
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.57 E-value=2.2e+02 Score=35.87 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=21.6
Q ss_pred ccccccceeeccccceeeccccccccccccccCCC
Q 008007 79 HNKTFSRQVSLETGFSVLNRESKAKDDRRVLPRSG 113 (581)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (581)
..|+..-|.+.-.|=++|+|-=.. .+..||-..
T Consensus 301 ~~~~i~eQi~~l~~S~~Lg~~L~~--Q~~~LP~~~ 333 (1109)
T PRK10929 301 ALNTLREQSQWLGVSNALGEALRA--QVARLPEMP 333 (1109)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHH--HHHhCCCCc
Confidence 356777888888888888765422 333566544
No 14
>PRK10263 DNA translocase FtsK; Provisional
Probab=58.93 E-value=3e+02 Score=35.30 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhc
Q 008007 380 GKFLWAVGFAHYLVLF--VTLYQRLPT 404 (581)
Q Consensus 380 s~~~fgiGl~lylvI~--~ii~~RL~~ 404 (581)
..+++.+|+..|++.+ ....++++.
T Consensus 73 D~L~~LFGl~AYLLP~LL~~~a~~l~R 99 (1355)
T PRK10263 73 DTLFFIFGVMAYTIPVIIVGGCWFAWR 99 (1355)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3445555665555433 333444443
No 15
>PRK11281 hypothetical protein; Provisional
Probab=57.49 E-value=4.9e+02 Score=32.86 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008007 503 SLSFMSSAMVCVLFVSTLLH 522 (581)
Q Consensus 503 vl~ilatli~~~vlv~Ti~~ 522 (581)
++.+++++++++++++.+.+
T Consensus 839 Ll~allIl~i~~~l~r~l~~ 858 (1113)
T PRK11281 839 LLFALIILVVTYVLVRNLPG 858 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445554444
No 16
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=57.34 E-value=2.7e+02 Score=32.40 Aligned_cols=55 Identities=24% Similarity=0.513 Sum_probs=32.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhcCC-ccccccccCccccc----------------------cccchHHHHhhhhhhcH
Q 008007 322 IWCAFMGPY-FFLELKIYGQWLSGG-KRRLCKVANPSSHL----------------------SVVGNFVGAILAAKVGW 376 (581)
Q Consensus 322 lW~igval~-lil~l~~~~~w~s~~-~~~~~~~~nPSWfL----------------------pvVG~~V~A~~Ga~lg~ 376 (581)
+|.+..+.. .+.++.+|+.++..+ -+.+++..+|+.-. .-.|++|++++|+++||
T Consensus 4 ~~~v~aa~~iy~igYr~Yg~fi~eKV~~~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~ 82 (575)
T COG1966 4 LWFVLAAAIVYAIGYFFYGKFIAEKVFRLDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGW 82 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcC
Confidence 455444433 455677788774332 12345677776622 23477888888888874
No 17
>PHA03242 envelope glycoprotein M; Provisional
Probab=53.09 E-value=3.8e+02 Score=30.20 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=32.2
Q ss_pred eechhHHHHHHHHHHHHh-c---ChhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008007 474 YTFPMTTASVATIKYAEH-V---PSVLTK---GLALSLSFMSSAMVCVLFVSTLLHAF 524 (581)
Q Consensus 474 fTFPLga~AlAT~~la~~-~---~s~~~~---~La~vl~ilatli~~~vlv~Ti~~v~ 524 (581)
.-+-.++..+++.+|.+. . ...+-. .+...+.+++++.++...++.+|...
T Consensus 292 ~lia~~~l~~p~~rY~~~~~~~v~~~~~~~~~~i~~~Laviail~l~~~vvRlvRa~~ 349 (428)
T PHA03242 292 ALVAAGIVGVAAHRYFTQGYYVAETQWPGAQTGVRVALALVALFALAMAVLRLVRAYL 349 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888432 2 333333 56667777777777777777776544
No 18
>PRK09776 putative diguanylate cyclase; Provisional
Probab=53.06 E-value=4.6e+02 Score=31.86 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008007 381 KFLWAVGFAHYLVLFVTL 398 (581)
Q Consensus 381 ~~~fgiGl~lylvI~~ii 398 (581)
+..|.+|-+++.++++.+
T Consensus 137 ~~~w~~~~~~g~l~~~p~ 154 (1092)
T PRK09776 137 FLIWVLSEAIGMLALVPL 154 (1092)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 455767777766665543
No 19
>PHA03239 envelope glycoprotein M; Provisional
Probab=49.60 E-value=4.3e+02 Score=29.80 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHh------cChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 477 PMTTASVATIKYAEH------VPSV-LTKGLALSLSFMSSAMVCVLFVSTLLHAFV 525 (581)
Q Consensus 477 PLga~AlAT~~la~~------~~s~-~~~~La~vl~ilatli~~~vlv~Ti~~v~~ 525 (581)
-.++..+|+..|... .+++ +...+...+.+++++.++...++.+|....
T Consensus 304 a~~iL~~aa~~Y~~~~Y~~v~v~a~~l~~~v~~~Laviail~l~~~ivRlvRa~~y 359 (429)
T PHA03239 304 ACAIAGTAAHAYADRLYDEIMIASPKLIQGAAGILAAFAVISIALAILRATRAYKF 359 (429)
T ss_pred HHHHHHHHHHhhhHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544432 2555 667788889999988888888888876544
No 20
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=45.31 E-value=2.2e+02 Score=25.67 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 383 LWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGDLDGLSRTCYFIALFLYVSLVVRINF 461 (581)
Q Consensus 383 ~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~~d~~a~iL~g~glf~~lllvv~i~~ 461 (581)
.+.+++++..+-..+.++|+...+..|+.....-. ++...++.++...+..+-..+.-+...++++-|+..+...++
T Consensus 9 ~~~~a~~~l~~a~~l~l~Rlv~GPt~~DRivAlD~--l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARy 85 (100)
T PRK12657 9 MIISALIIFGIALIICLFRLIKGPTTADRVVTFDT--TSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRF 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH--HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445445555555668999988888876554433 234444455544443222333444445555555544444444
No 21
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.97 E-value=1.2e+02 Score=38.03 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=13.9
Q ss_pred CCCCCCCcc--------cccCCchhhHHHHHHHHHH
Q 008007 204 LPKDEKWPF--------LLRFPIGCFGICLGLSSQA 231 (581)
Q Consensus 204 ~p~~~~w~~--------L~~fppawFgivMGtGgLA 231 (581)
+..|..|+- +..+|.+.+-.++|.|...
T Consensus 512 v~~D~~~~T~~al~~t~l~alP~pl~~~~~g~~l~~ 547 (1109)
T PRK10929 512 VTQDHFSLTLRTVFWSILVASPLPVLWAALGYGLQN 547 (1109)
T ss_pred cccccccccHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 446777643 3345555444444444433
No 22
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=42.53 E-value=8.2 Score=40.75 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHhcCCcccccc
Q 008007 282 VRREYFHPVRINFF 295 (581)
Q Consensus 282 vr~El~hPv~~sFf 295 (581)
++|++.-|.-..++
T Consensus 72 F~RrLLCPLGlLCi 85 (381)
T PF05297_consen 72 FKRRLLCPLGLLCI 85 (381)
T ss_dssp --------------
T ss_pred HHHhhcCcchHHHH
Confidence 45666677655543
No 23
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=40.78 E-value=9.1 Score=40.44 Aligned_cols=8 Identities=13% Similarity=0.970 Sum_probs=0.0
Q ss_pred ccccceee
Q 008007 466 RFSVAWWS 473 (581)
Q Consensus 466 ~Fs~~WWA 473 (581)
.+--+||.
T Consensus 131 ~~GAs~Wt 138 (381)
T PF05297_consen 131 ELGASFWT 138 (381)
T ss_dssp --------
T ss_pred HhhhHHHH
Confidence 46667774
No 24
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=40.60 E-value=5e+02 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=17.1
Q ss_pred hchHHHHHHhcCCccccccchH
Q 008007 277 FYFEAVRREYFHPVRINFFFAP 298 (581)
Q Consensus 277 ~~p~~vr~El~hPv~~sFf~T~ 298 (581)
.+-+...++..|+.+-+|.-|+
T Consensus 26 ~~L~~~~~~ig~~~~D~~~~T~ 47 (340)
T PF12794_consen 26 QRLERIAKRIGKVRQDSFSHTP 47 (340)
T ss_pred HHHHHHHHHcCCccCCCchhhH
Confidence 3446777888889888888877
No 25
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=39.38 E-value=2.4e+02 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 008007 219 GCFGICLGLSSQAVLWRALS 238 (581)
Q Consensus 219 awFgivMGtGgLA~lw~~l~ 238 (581)
-..|.++|..+..-+|....
T Consensus 11 ~i~g~~lG~~~~p~ll~~~~ 30 (356)
T COG4956 11 IIIGAVLGFAVIPELLADLG 30 (356)
T ss_pred HHHHhhhhHhhHHHHHhhcC
Confidence 45678888888877777644
No 26
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=38.78 E-value=5.3e+02 Score=27.77 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------HHHhchHHHHHHhcCCccccccchHHH
Q 008007 250 PFINLGLWLLAVAVLISVSFTYIL-------KCIFYFEAVRREYFHPVRINFFFAPWV 300 (581)
Q Consensus 250 ~~I~~IL~~lAl~Lfi~l~vlyll-------K~i~~p~~vr~El~hPv~~sFf~T~~M 300 (581)
..++..+...+..+|++.+...++ +.+..|+...+.+++-.+-..+...++
T Consensus 82 ~~l~~~l~~~a~~~~~~~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl 139 (340)
T PF12794_consen 82 VALGAALLAMALFWLVFEFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPL 139 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776665555433332 233344555555555444444333333
No 27
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=35.30 E-value=7.8e+02 Score=28.72 Aligned_cols=53 Identities=8% Similarity=-0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCchhHHHhhhhhccccC-cchhhhhhh
Q 008007 499 GLALSLSFMSSAMVCVLFVSTLLHAFVWHTLFPNDLAIAITKKRLVKEKK-PFKKAYDLR 557 (581)
Q Consensus 499 ~La~vl~ilatli~~~vlv~Ti~~v~~~~~Lfp~d~aia~~~~~~~~~~~-~~~~~~~~~ 557 (581)
..+.++++++.+.|+..++......-. =...-|.+++.-+.=-= .+.-+||+.
T Consensus 484 ~~~~~~~~~~~~~W~~a~yff~~~~t~------w~~tpA~SR~lN~~Cil~~f~D~HDiw 537 (570)
T PF13965_consen 484 LKPIIYLVLAFVSWGFALYFFFQNTTD------WTLTPAESRELNKECILLGFFDWHDIW 537 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCc------cccChHhHHhcCCCCcCcCccccHHHH
Confidence 445567777777888766665432111 11233555554211111 235777873
No 28
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=35.30 E-value=61 Score=33.20 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCCCcccCC-CchhHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 008007 217 PIGCFGICLGLSSQAVLWRALSTSPATKFLH-VPPFINLGLWLLAVA---VLISVSFTYILKCIFY 278 (581)
Q Consensus 217 ppawFgivMGtGgLA~lw~~l~~~~a~~~l~-~~~~I~~IL~~lAl~---Lfi~l~vlyllK~i~~ 278 (581)
|++++..+||++++-.++..- .++ +|..+-..+|+++++ +.++++++.++|++.|
T Consensus 106 ~~~~~~~l~~~~~~~~v~a~~-------lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf 164 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVGVIAIC-------LFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILF 164 (224)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-------hhhcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777666554443221 111 466677777777665 3344444556777765
No 29
>PRK07948 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=35.10 E-value=3.1e+02 Score=23.97 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 386 VGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGDLDGLSRTCYFIALFLYVSLVVRINF 461 (581)
Q Consensus 386 iGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~~d~~a~iL~g~glf~~lllvv~i~~ 461 (581)
+++.+..+-..+.++|+...+..|+.....-.+ +...++.++.......-..+.-....++++-|+..+...++
T Consensus 7 ~~~~~l~~a~~l~~~Rli~GPt~~DRvvAlD~l--~~~~v~~l~l~~~~~~~~~~ldvalvlAll~Fv~tva~Ary 80 (86)
T PRK07948 7 IAAVFLSLAAILTTYRILAGPNSLDRLVALDTL--VAVTMCALATWAAWTLDTTVTNAMTALALIGFIGSVSVARF 80 (86)
T ss_pred HHHHHHHHHHHHHHHHHhcCcChhhHHHHHHHH--HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556679999998888876655544 23334444433332222223333344455555544443333
No 30
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.89 E-value=5.8e+02 Score=30.06 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHhh
Q 008007 320 PAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAIL 370 (581)
Q Consensus 320 ~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~~ 370 (581)
.++..+|.+.++++..-+..||+.-.+++.+.....=|+++..|.+..-+=
T Consensus 8 ~~~~~~G~~~q~~F~~rf~~QW~~sek~~~s~~p~~FW~~Sl~g~~~l~~y 58 (608)
T PRK01021 8 LWLYPLGLFANLFFGSAFCIQWFLSKKRKYSYVPKIFWILSSIGAVLMICH 58 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCchHHHHHHHHHHHHHHHH
Confidence 344446777888887777788876554443444445688888877655443
No 31
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=33.98 E-value=92 Score=30.95 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=11.0
Q ss_pred ccccCCCccchhccc
Q 008007 174 SVNRSVPAGRYFAAL 188 (581)
Q Consensus 174 ~~~~~~~~~r~f~~l 188 (581)
.-+++.+|..+|.+.
T Consensus 41 aQk~G~tA~~lfG~P 55 (206)
T PF06570_consen 41 AQKKGKTARQLFGDP 55 (206)
T ss_pred HHhCCCcHHHHcCCH
Confidence 346788899998833
No 32
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=33.24 E-value=3.5e+02 Score=25.36 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=21.6
Q ss_pred cccccee-eeechhHHHHHHHHHHHHhcChhhHHHHH
Q 008007 466 RFSVAWW-SYTFPMTTASVATIKYAEHVPSVLTKGLA 501 (581)
Q Consensus 466 ~Fs~~WW-AfTFPLga~AlAT~~la~~~~s~~~~~La 501 (581)
.+-..|| ++.-|....-.|.........+.....++
T Consensus 61 e~Gi~FW~aMYIPIVVAMAA~QNVv~Al~gG~~Alla 97 (125)
T TIGR00807 61 QFGVGFWSAMYIPIVVAMAAGQNVVAALSGGMLALLA 97 (125)
T ss_pred HhHHHHHHccHhHHHHHHhhhchhHHHhcCCchHHHH
Confidence 4667777 78899966554544455555554444333
No 33
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=32.21 E-value=2.1e+02 Score=28.43 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCCCcccccCC--chhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008007 207 DEKWPFLLRFP--IGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILK 274 (581)
Q Consensus 207 ~~~w~~L~~fp--pawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK 274 (581)
||-.|+++|+| -=|..+ +-...+|..+...+ ++++| ++|=+-++.|++++++..-|
T Consensus 96 ~EFrPFiRRlPEFkFW~~~-tka~~i~~~~tff~------~fdiP-----VFWPiLl~Yfi~lf~~tm~~ 153 (176)
T PF03248_consen 96 DEFRPFIRRLPEFKFWYSC-TKATVISLFCTFFP------FFDIP-----VFWPILLVYFIVLFVLTMKR 153 (176)
T ss_pred cccCCccccchhhHHHHHH-HHHHHHHHHHHHHH------hcCCc-----chhHHHHHHHHHHHHHHHHH
Confidence 45568888888 234433 34445566655543 45554 44555555566665544433
No 34
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=31.75 E-value=1.2e+03 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHHHHHHHH
Q 008007 301 VCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFL 333 (581)
Q Consensus 301 a~mlLa~~l~~~~~p~~l~~vlW~igval~lil 333 (581)
.+++++.++..- -...||+.+++..+.
T Consensus 62 ~Ll~lA~gL~rr------~r~Aw~~~~~~~~~~ 88 (1094)
T PRK02983 62 VLALLAAALRRR------KRAAWWVLLAYLVLA 88 (1094)
T ss_pred HHHHHHHHHHHh------HHHHHHHHHHHHHHH
Confidence 444556654321 235688777665553
No 35
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.83 E-value=41 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=10.9
Q ss_pred hhhccccCcchhhhhhhhhHHHHhhhcCCCCCCCC
Q 008007 541 KRLVKEKKPFKKAYDLRRWTKQALTKHNSANKDFD 575 (581)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (581)
+|.||||| +.+ -++|..+.+...-|..+.|.|
T Consensus 31 rk~~rqrk-Id~--li~RIreraEDSGnES~Gd~E 62 (81)
T PF00558_consen 31 RKIKRQRK-IDR--LIERIRERAEDSGNESDGDEE 62 (81)
T ss_dssp ---------CHH--HHHHHHCTTTCCHCTTTTCCH
T ss_pred HHHHHHHh-HHH--HHHHHHcccccCCCCCCCcHH
Confidence 45555533 222 345666655544444433333
No 36
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=29.66 E-value=1.1e+02 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008007 219 GCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYI 272 (581)
Q Consensus 219 awFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyl 272 (581)
..+..+|++|.+|.+++.+..++.+.++.. -+.+++++++++|+..++.-+
T Consensus 63 ~~Lh~v~~lglig~~iKl~kp~e~~~lFdg---~SL~Ly~~~i~vYltni~~gi 113 (196)
T PF08229_consen 63 YILHIVIGLGLIGLLIKLYKPSESNKLFDG---ASLVLYVFGICVYLTNIVPGI 113 (196)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHhhcccc---hhHHHHHHHHHHHhHhhHhHH
Confidence 457789999999999999765555556544 467777777777766654433
No 37
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=29.37 E-value=9.3e+02 Score=27.80 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=10.4
Q ss_pred HhcCccCCCchhHHHhhhh
Q 008007 524 FVWHTLFPNDLAIAITKKR 542 (581)
Q Consensus 524 ~~~~~Lfp~d~aia~~~~~ 542 (581)
+-.+.+..+++-+...++|
T Consensus 243 ~~~r~il~~~~f~~~~~~k 261 (509)
T COG3202 243 YINRNVLTDPLFYLRAKKK 261 (509)
T ss_pred HHHhhcccCcchhHHHhcc
Confidence 3346667777666444433
No 38
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=28.95 E-value=4.1e+02 Score=23.55 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008007 386 VGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGDLDGLSRTCYFIALFLYVSLVVRINFF 462 (581)
Q Consensus 386 iGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~~d~~a~iL~g~glf~~lllvv~i~~~ 462 (581)
+++++..+-..+.++|+...+..|+.....-.+ +...++.++......+-..+.-+...++++-|+..+...+++
T Consensus 8 ~~~~~l~~~~~~~l~Rli~GPt~~DRvvAlD~l--~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl 82 (94)
T PRK12600 8 IALIIVAISMLLMLIRVIKGPTLADRVVALDAI--GINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFI 82 (94)
T ss_pred HHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455678999888888766554433 334555555554432223333444455555555444444443
No 39
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=28.52 E-value=4.6e+02 Score=27.12 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008007 385 AVGFAHYLVLFVTLYQRLP 403 (581)
Q Consensus 385 giGl~lylvI~~ii~~RL~ 403 (581)
.+|+++.+++...+..|++
T Consensus 43 ~lGv~~s~li~~~~~~k~l 61 (249)
T PF10225_consen 43 SLGVLASLLILLFQLSKLL 61 (249)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4566666666667777766
No 40
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.83 E-value=1e+02 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=18.6
Q ss_pred ccccccchHHHHhhhhhhcHHHHHHHHHHH
Q 008007 357 SHLSVVGNFVGAILAAKVGWKEVGKFLWAV 386 (581)
Q Consensus 357 WfLpvVG~~V~A~~Ga~lg~~e~s~~~fgi 386 (581)
+.+|.++.++++.+|..++..+...++.++
T Consensus 75 Y~lPll~li~g~~l~~~~~~~e~~~~l~~l 104 (135)
T PF04246_consen 75 YLLPLLALIAGAVLGSYLGGSELWAILGGL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777655554444333
No 41
>PRK09776 putative diguanylate cyclase; Provisional
Probab=27.71 E-value=8.7e+02 Score=29.51 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 008007 318 LHPAIWCAFMGPYFFL 333 (581)
Q Consensus 318 l~~vlW~igval~lil 333 (581)
..+..||++-++..++
T Consensus 135 ~~~~~w~~~~~~g~l~ 150 (1092)
T PRK09776 135 RAFLIWVLSEAIGMLA 150 (1092)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456788876655443
No 42
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=27.51 E-value=1.5e+02 Score=28.76 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCccccceeee
Q 008007 440 LSRTCYFIALFLYVSLVVRINFFTGFRFSVAWWSY 474 (581)
Q Consensus 440 ~a~iL~g~glf~~lllvv~i~~~~~~~Fs~~WWAf 474 (581)
+...++|+-...|.+.-.....+..+.|+|-|=+.
T Consensus 33 flttlfgilqlvyvifkllctmfptlhfspiwrgl 67 (233)
T PF10943_consen 33 FLTTLFGILQLVYVIFKLLCTMFPTLHFSPIWRGL 67 (233)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhccccccchHhhhH
Confidence 33344444444333322223344556788877553
No 43
>PRK15015 carbon starvation protein A; Provisional
Probab=26.82 E-value=7.3e+02 Score=29.67 Aligned_cols=56 Identities=21% Similarity=0.496 Sum_probs=31.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCc-cccccccCccccc-------c---------------ccchHHHHhhhhhhcH
Q 008007 321 AIWCAFMGP-YFFLELKIYGQWLSGGK-RRLCKVANPSSHL-------S---------------VVGNFVGAILAAKVGW 376 (581)
Q Consensus 321 vlW~igval-~lil~l~~~~~w~s~~~-~~~~~~~nPSWfL-------p---------------vVG~~V~A~~Ga~lg~ 376 (581)
.+|.+..++ .+++++.+|++|+..+. +.+++..+|+--+ | -.|++|++++++.+||
T Consensus 34 al~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~Gw 113 (701)
T PRK15015 34 ALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGY 113 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcc
Confidence 456554433 34556888988775432 2344566666532 2 2356677776666664
No 44
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.89 E-value=99 Score=28.81 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008007 249 PPFINLGLWLLAVAVLISVSFTYILKCIF 277 (581)
Q Consensus 249 ~~~I~~IL~~lAl~Lfi~l~vlyllK~i~ 277 (581)
+.+++.++++++.++.+++++.|++|-.+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777765433
No 45
>COG5487 Small integral membrane protein [Function unknown]
Probab=25.87 E-value=1.5e+02 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHH
Q 008007 218 IGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSF 269 (581)
Q Consensus 218 pawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~v 269 (581)
++.-+-++|.|+++..- ..++.+++++.+++|++.+.
T Consensus 11 ialIa~~lGFgGiagaa---------------AgiAkIlF~i~~vlf~vsL~ 47 (54)
T COG5487 11 IALIAGALGFGGIAGAA---------------AGIAKILFFIFLVLFLVSLF 47 (54)
T ss_pred HHHHHHHhCcccHHHHH---------------HhHHHHHHHHHHHHHHHHHH
Confidence 34445566666665542 34678888888877776543
No 46
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=25.23 E-value=67 Score=27.33 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHH
Q 008007 326 FMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVG 367 (581)
Q Consensus 326 gval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~ 367 (581)
|.+.++++..-+..||+.-++++++.....=|.+..+|.+..
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~ll 43 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLL 43 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 445566666666667765443333333333466665555443
No 47
>PF14851 FAM176: FAM176 family
Probab=25.08 E-value=1.7e+02 Score=28.39 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcChh
Q 008007 480 TASVATIKYAEHVPSV 495 (581)
Q Consensus 480 a~AlAT~~la~~~~s~ 495 (581)
.++.+...|+.....|
T Consensus 4 llSnsLaaya~I~~~P 19 (153)
T PF14851_consen 4 LLSNSLAAYAHIRDNP 19 (153)
T ss_pred HHHHHHHHHHHHHhCh
Confidence 3444445555555444
No 48
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.03 E-value=2.5e+02 Score=29.04 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=33.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhccCCCcccCC-CchhHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 008007 217 PIGCFGICLGLSSQAVLWRALSTSPATKFLH-VPPFINLGLWLLAVAVLIS---VSFTYILKCIFY 278 (581)
Q Consensus 217 ppawFgivMGtGgLA~lw~~l~~~~a~~~l~-~~~~I~~IL~~lAl~Lfi~---l~vlyllK~i~~ 278 (581)
|..+...+||++.+...+..- .++ +|..+-..+|++++.+..+ ++++.++|++.|
T Consensus 114 ~~~~~~~l~~~~~~~~ila~~-------lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilF 172 (232)
T TIGR00869 114 PRPYMDYLIVILVVSIILALV-------LFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILF 172 (232)
T ss_pred CCcHHHHHHHHHHHHHHHHHh-------hcccChHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776665441 122 5677778888887755444 344555666654
No 49
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.74 E-value=4.8e+02 Score=22.86 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008007 386 VGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYGDLDGLSRTCYFIALFLYVSLVVRINFF 462 (581)
Q Consensus 386 iGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g~~d~~a~iL~g~glf~~lllvv~i~~~ 462 (581)
+++++..+-..+.++|+...+..|+.....-.+ +...++.++...+..+-..+.-+...++++-|+..+...+++
T Consensus 8 ~~~~~l~~a~~l~l~R~v~GPt~~DRvvA~D~l--~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~ 82 (89)
T PRK06161 8 IAQVALALAMLLALWRLLRGPRAQDRILALDTL--YINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFL 82 (89)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455678999888888776555443 333444444444433323333444455555555444444443
No 50
>PRK01637 hypothetical protein; Reviewed
Probab=24.52 E-value=7.2e+02 Score=25.79 Aligned_cols=49 Identities=2% Similarity=-0.118 Sum_probs=26.7
Q ss_pred eeeechhHHHHHHHHHHHHh-----cC--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008007 472 WSYTFPMTTASVATIKYAEH-----VP--SVLTKGLALSLSFMSSAMVCVLFVSTL 520 (581)
Q Consensus 472 WAfTFPLga~AlAT~~la~~-----~~--s~~~~~La~vl~ilatli~~~vlv~Ti 520 (581)
|-.++|=+.+|+....+.+. .. +..-..-|.+-.+++.++|+++....+
T Consensus 201 ~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~~~y~~~YGslg~vi~lllWlyl~~~il 256 (286)
T PRK01637 201 FRHALVGALVAALLFELGKKGFALYITTFPSYQLIYGALAVIPILFVWVYLSWCIV 256 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655555555544442 21 112234566666777778877766665
No 51
>PLN02601 beta-carotene hydroxylase
Probab=24.51 E-value=8.8e+02 Score=25.90 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred ccceeeccccccccccccccCCCccccccccccccccccccCCCCccchhhhhhccccccCCCCcCCCCCCCccCCcccc
Q 008007 91 TGFSVLNRESKAKDDRRVLPRSGHSFGGFDSATRIGVEARNRGDFSIFKTKSTLSKQNSLMPTRKEKGMEAPKIDGAARL 170 (581)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (581)
+|.|.+.-..|.-..+..--+--.|+.||..+-|.....|| +.++.---..++....+.+.+++++
T Consensus 3 ~~~~~~~~t~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~--------------~~~~~c~v~~~~~~~~~~~~~~~~~ 68 (303)
T PLN02601 3 AGLSTIAVTLKPLHRSDFRLNHPISLAVFPPSLRFNGFRRR--------------KILTVCFVVEERKQSSPMENDEKPE 68 (303)
T ss_pred ccccccccccccCcccCccCCCCcccccCCHHHHhhhcccC--------------CceeEEEEeccccccccccccchhh
Q ss_pred CCcccccCCCccchhcccCCCccccccccccccCCCCCCCcccccCCchhhHHHHHHHHHHHHHHHhccC--CCcccCCC
Q 008007 171 DDESVNRSVPAGRYFAALRGPELDEVKDTEDILLPKDEKWPFLLRFPIGCFGICLGLSSQAVLWRALSTS--PATKFLHV 248 (581)
Q Consensus 171 ~~~~~~~~~~~~r~f~~l~g~~~~~~~~~~~~~~p~~~~w~~L~~fppawFgivMGtGgLA~lw~~l~~~--~a~~~l~~ 248 (581)
.+.......+..|.=+.+..-..|+.--.- +.-.+++|+.++++.-..+-.+ -...-.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~k~~er~ty~~------------------aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~ 130 (303)
T PLN02601 69 STTSSSEILMTSRLLKKAEKKKSERFTYLI------------------AAVMSSFGITSMAIMAVYYRFSWQMKGGEVSM 130 (303)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHH------------------HHHHHhhcHHHHHHHHHHHHHhhccCCCCcCH
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhch--HHHHHHhcCCccccc---------cchHHHHHHHHHhccCCCCCccc
Q 008007 249 PPFINLGLWLLAVAVLISVSFTYILKCIFYF--EAVRREYFHPVRINF---------FFAPWVVCMFLAIGVPPVVAPET 317 (581)
Q Consensus 249 ~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p--~~vr~El~hPv~~sF---------f~T~~Ma~mlLa~~l~~~~~p~~ 317 (581)
...++.+...++.++..=..+-+.-|++.|- =.+=++-+.|-.+.| |+.+.|+++.++.....+
T Consensus 131 ~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~----- 205 (303)
T PLN02601 131 LEMFGTFALSVGAAVGMEFWARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGL----- 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccc-----
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 008007 318 LHPAIWCAFMGPYFFLELKIYGQ 340 (581)
Q Consensus 318 l~~vlW~igval~lil~l~~~~~ 340 (581)
+...++++|+.+.+.=..+++.+
T Consensus 206 ~p~~~fgiGlGITlYGiaYffVH 228 (303)
T PLN02601 206 VPGLCFGAGLGITVFGMAYMFVH 228 (303)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHh
No 52
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.98 E-value=6.4e+02 Score=28.65 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=19.5
Q ss_pred cccCCchhhHHHHHHHHHHHHHHH
Q 008007 213 LLRFPIGCFGICLGLSSQAVLWRA 236 (581)
Q Consensus 213 L~~fppawFgivMGtGgLA~lw~~ 236 (581)
|-.|++.|+|+++.+|++..+|..
T Consensus 18 iG~~~I~~YGl~ialGil~a~~l~ 41 (460)
T PRK13108 18 LGPLPVRAYAVCVITGIIVALLIG 41 (460)
T ss_pred eccccHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999766544
No 53
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=22.46 E-value=1.9e+02 Score=24.99 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=35.4
Q ss_pred CCCCCCCcchhHHHHhhHHHHHHHHHHHHhC------C--------hhHHHHHHHHHHHHHHHH
Q 008007 405 SEALPKELHPVYSMFIAAPSAASIAWQAIYG------D--------LDGLSRTCYFIALFLYVS 454 (581)
Q Consensus 405 ~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g------~--------~d~~a~iL~g~glf~~ll 454 (581)
..+.+++..|.+.+.+-..|+...||.-+.+ + ...++.++.|+|.++.++
T Consensus 8 ~sPV~p~~~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL 71 (77)
T PF05251_consen 8 TSPVNPALYPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLL 71 (77)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577888889888888888888888887743 1 113566777777765543
No 54
>COG1584 Predicted membrane protein [Function unknown]
Probab=21.76 E-value=7e+02 Score=25.36 Aligned_cols=46 Identities=7% Similarity=-0.115 Sum_probs=26.1
Q ss_pred chhHHHHhhHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH
Q 008007 413 HPVYSMFIAAPSAASIAWQAIYGDLDGLSRTCYFIALFLYVSLVVR 458 (581)
Q Consensus 413 ~Ps~fI~vAPpsvas~A~l~L~g~~d~~a~iL~g~glf~~lllvv~ 458 (581)
.-+++|+-|-.+|..++....-..-.+....+-.+|.||+......
T Consensus 53 vl~ma~fyGGlaQl~AGi~e~k~GnTFG~TAF~SyG~FW~s~a~~~ 98 (207)
T COG1584 53 VLSMAIFYGGLAQLFAGILEYKKGNTFGGTAFTSYGLFWLSLALIL 98 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCcccchHHhhccHHHHHHHHHH
Confidence 5677788887888777766553211111223345666776655443
Done!