Query 008007
Match_columns 581
No_of_seqs 183 out of 979
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m73_A Tellurite resistance pr 100.0 2.2E-56 7.4E-61 463.3 30.1 304 215-531 8-313 (314)
2 3m73_A Tellurite resistance pr 97.7 0.0019 6.4E-08 66.6 19.5 211 218-453 81-296 (314)
3 2knc_B Integrin beta-3; transm 17.5 1.8E+02 0.0062 23.8 5.0 27 252-278 11-37 (79)
4 3tj3_C Nuclear pore complex pr 16.2 35 0.0012 30.1 0.4 16 25-40 23-38 (114)
5 2r9r_B Paddle chimera voltage 12.8 1.8E+02 0.0063 31.4 5.0 8 19-26 12-19 (514)
6 2c1m_B Nucleoporin 50 kDa; pro 11.8 95 0.0033 23.1 1.6 18 23-40 16-33 (46)
7 2k9j_B Integrin beta-3; transm 11.0 3.4E+02 0.011 19.6 4.3 30 250-279 8-37 (43)
8 3ug9_A Archaeal-type opsin 1, 9.1 2E+02 0.0068 29.8 3.4 33 250-282 65-97 (333)
9 3eff_K Voltage-gated potassium 7.4 6.7E+02 0.023 21.5 5.8 18 386-403 13-30 (139)
10 3lw5_I PSI-I, photosystem I re 6.9 1.9E+02 0.0066 19.7 1.4 19 354-372 4-22 (30)
No 1
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=100.00 E-value=2.2e-56 Score=463.27 Aligned_cols=304 Identities=19% Similarity=0.314 Sum_probs=276.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCccccc
Q 008007 215 RFPIGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRINF 294 (581)
Q Consensus 215 ~fppawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~sF 294 (581)
|+||+||+++||||++|++|+.+++ .+++++.++.+++++|+++|++++++|++|+++||+.+++|++||++++|
T Consensus 8 ~~p~~~F~~~MGtg~la~~~~~~~~-----~~~~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p~~~~~~l~hPv~~~f 82 (314)
T 3m73_A 8 PLPTGYFGIPLGLAALSLAWFHLEN-----LFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSF 82 (314)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchhh
Confidence 7799999999999999999999763 45677899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccc-hHHHHhhhhh
Q 008007 295 FFAPWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVG-NFVGAILAAK 373 (581)
Q Consensus 295 f~T~~Ma~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG-~~V~A~~Ga~ 373 (581)
++|++|++++++.+..++. ..++.++||+++++++++.+++...++.+ +++..+++||+|+||+|| ++|++++|+.
T Consensus 83 ~~t~~ma~~~l~~~~~~~~--~~~a~~lW~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~psW~lp~V~~~~V~a~~g~~ 159 (314)
T 3m73_A 83 IALIPITTMLVGDILYRWN--PLIAEVLIWIGTIGQLLFSTLRVSELWQG-GVFEQKSTHPSFYLPAVAANFTSASSLAL 159 (314)
T ss_dssp GGHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHHHHTGGGGGC-SSSCGGGCCGGGHHHHTHHHHHHCC-TTT
T ss_pred HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcccccCchhHhhccHHHHHHHHhhhh
Confidence 9999999999998877652 25788999999999999887666665554 334688999999999999 7999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHH
Q 008007 374 VGWKEVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYG-DLDGLSRTCYFIALFLY 452 (581)
Q Consensus 374 lg~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g-~~d~~a~iL~g~glf~~ 452 (581)
+++++.++++|++|+++|+++++++++|+++ +.+|++++|++||++||+|++++||+.+.+ ..|.++.++|++|+||+
T Consensus 160 ~~~~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~~~~~~~~~~~l~~~~l~~~ 238 (314)
T 3m73_A 160 LGYHDLGYLFFGAGMIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYGFLQL 238 (314)
T ss_dssp TTCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 9988999999999999999999999999999 889999999999999999999999999974 67889999999999999
Q ss_pred HHHHHHHHhhhcCccccceeeeechhHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Q 008007 453 VSLVVRINFFTGFRFSVAWWSYTFPMTTASVATIKYAEHVPSVLTKGLALSLSFMSSAMVCVLFVSTLLHAFVWHTLFP 531 (581)
Q Consensus 453 lllvv~i~~~~~~~Fs~~WWAfTFPLga~AlAT~~la~~~~s~~~~~La~vl~ilatli~~~vlv~Ti~~v~~~~~Lfp 531 (581)
++++...++++++||+++|||||||+|++++||+++++ ++++++++.+++++++++|++++++|++++++ +++++
T Consensus 239 ~~~~~~~~~~~~~~F~~~wWaftFPl~~~a~at~~l~~---~~~~~~l~~~l~~~~~~~~~~v~~~tl~~~~~-g~l~~ 313 (314)
T 3m73_A 239 FFLLRLFPWIVEKGLNIGLWAFSAGLASMANSATAFYH---GNVLQGVSIFAFVFSNVMIGLLVLMTIYKLTK-GQFFL 313 (314)
T ss_dssp HHHHHHHHHHTTTCCCGGGGGGHHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSCC
T ss_pred HHHHHHHHHHcCCCCCccHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCC
Confidence 98887777788899999999999999999999999999 78899999999999999999999999999886 55554
No 2
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=97.71 E-value=0.0019 Score=66.57 Aligned_cols=211 Identities=14% Similarity=0.053 Sum_probs=125.4
Q ss_pred chhhHHHHHHHHHHHHHHHhccCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhcCCccccccch
Q 008007 218 IGCFGICLGLSSQAVLWRALSTSPATKFLHVPPFINLGLWLLAVAVLISVSFTYILKCIFYFEAVRREYFHPVRINFFFA 297 (581)
Q Consensus 218 pawFgivMGtGgLA~lw~~l~~~~a~~~l~~~~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~vr~El~hPv~~sFf~T 297 (581)
.-..+..||+..+++.+.. +...++.++|++++++-+++.+.+..+.+... +.+++|..-+.+++
T Consensus 81 ~f~~t~~ma~~~l~~~~~~-----------~~~~~a~~lW~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~~psW~lp- 145 (314)
T 3m73_A 81 SFIALIPITTMLVGDILYR-----------WNPLIAEVLIWIGTIGQLLFSTLRVSELWQGG---VFEQKSTHPSFYLP- 145 (314)
T ss_dssp GGGGHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHHHHTGGGGGCS---SSCGGGCCGGGHHH-
T ss_pred hhHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcccccCchhHhh-
Confidence 3466778888887776532 22567899999988876655433222322221 01333333333333
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCccccccccchHHHHhhhhhhc--
Q 008007 298 PWVVCMFLAIGVPPVVAPETLHPAIWCAFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILAAKVG-- 375 (581)
Q Consensus 298 ~~Ma~mlLa~~l~~~~~p~~l~~vlW~igval~lil~l~~~~~w~s~~~~~~~~~~nPSWfLpvVG~~V~A~~Ga~lg-- 375 (581)
.++.++++....+.......+..+|.+|+...+++...++++.+. + ..++...|+.+++.-+.-+++.+.-.++
T Consensus 146 -~V~~~~V~a~~g~~~~~~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~--~lp~~~~P~~~I~~aP~~~~~~a~l~l~~~ 221 (314)
T 3m73_A 146 -AVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHLRI-S--SLEPQFRATMGIVLAPAFVCVSAYLSINHG 221 (314)
T ss_dssp -HTHHHHHHCC-TTTTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-T--CCCHHHHGGGGGGGHHHHHHHHHHHHHTTT
T ss_pred -ccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c--CCChhhhhHHHHHHhhHHHHHHHHHHHcCC
Confidence 344333332222111222477899999999888876555666665 3 2467788999888776666665444442
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHhhHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHH
Q 008007 376 -WKEVGKFLWAVGFAHYLVLFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWQAIYG--DLDGLSRTCYFIALFLY 452 (581)
Q Consensus 376 -~~e~s~~~fgiGl~lylvI~~ii~~RL~~~~~lP~~l~Ps~fI~vAPpsvas~A~l~L~g--~~d~~a~iL~g~glf~~ 452 (581)
....+.++|++|+..+++.... +.|+. +.+..|+.|=+.=|.+..+.|-..+.. .+..++..+..+.....
T Consensus 222 ~~~~~~~~l~~~~l~~~~~~~~~-~~~~~-----~~~F~~~wWaftFPl~~~a~at~~l~~~~~~~~l~~~l~~~~~~~~ 295 (314)
T 3m73_A 222 EVDTLAKILWGYGFLQLFFLLRL-FPWIV-----EKGLNIGLWAFSAGLASMANSATAFYHGNVLQGVSIFAFVFSNVMI 295 (314)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHHHT-----TTCCCGGGGGGHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHHc-----CCCCCccHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1346889999999888776553 22322 346889999999999988888776654 23345555544444333
Q ss_pred H
Q 008007 453 V 453 (581)
Q Consensus 453 l 453 (581)
.
T Consensus 296 ~ 296 (314)
T 3m73_A 296 G 296 (314)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=17.47 E-value=1.8e+02 Score=23.75 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008007 252 INLGLWLLAVAVLISVSFTYILKCIFY 278 (581)
Q Consensus 252 I~~IL~~lAl~Lfi~l~vlyllK~i~~ 278 (581)
.+.++.+++.++.+.++++.+.|++.+
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555556665543
No 4
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=16.24 E-value=35 Score=30.09 Aligned_cols=16 Identities=50% Similarity=0.704 Sum_probs=9.5
Q ss_pred chhhhhcccccccccc
Q 008007 25 EEEEEEEGTVRMEDKE 40 (581)
Q Consensus 25 ~~~~~~~~~~~~~~~~ 40 (581)
|||+||.|+......+
T Consensus 23 eed~ee~GtF~~AS~e 38 (114)
T 3tj3_C 23 EDEAEEVGTFSMASEE 38 (114)
T ss_dssp CCCCCCCCCCCBCCHH
T ss_pred cccccccCCcccCCHH
Confidence 4455567776665554
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=12.81 E-value=1.8e+02 Score=31.36 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=0.0
Q ss_pred cccCCcch
Q 008007 19 HEVLPEEE 26 (581)
Q Consensus 19 ~~~~~~~~ 26 (581)
|..+|.+.
T Consensus 12 ~~~~~~~~ 19 (514)
T 2r9r_B 12 HGLVPRGS 19 (514)
T ss_dssp --------
T ss_pred cCcccccc
Confidence 45555443
No 6
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=11.79 E-value=95 Score=23.15 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=10.9
Q ss_pred Ccchhhhhcccccccccc
Q 008007 23 PEEEEEEEEGTVRMEDKE 40 (581)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (581)
++|||++|.||......+
T Consensus 16 ~~e~e~ee~g~f~~AS~e 33 (46)
T 2c1m_B 16 DEEDEVEEMGTFSVASEE 33 (46)
T ss_dssp SCCCCCCCCCCCCBCCHH
T ss_pred ccccccccCCccccCCHH
Confidence 455556677777655544
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=11.01 E-value=3.4e+02 Score=19.64 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 008007 250 PFINLGLWLLAVAVLISVSFTYILKCIFYF 279 (581)
Q Consensus 250 ~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p 279 (581)
.....++.+++.++.+.+.++.+.|+..+-
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 344555566666666666666677776544
No 8
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=9.11 E-value=2e+02 Score=29.79 Aligned_cols=33 Identities=9% Similarity=-0.165 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q 008007 250 PFINLGLWLLAVAVLISVSFTYILKCIFYFEAV 282 (581)
Q Consensus 250 ~~I~~IL~~lAl~Lfi~l~vlyllK~i~~p~~v 282 (581)
...+..++++.++++++.++.+.+-..+-|...
T Consensus 65 ~~~~~~~lWvvfa~M~aatlfF~~~~~rv~~~w 97 (333)
T 3ug9_A 65 KLAANILQWITFALSALCLMFYGYQTWKSTCGW 97 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCe
Confidence 345666666666666666555554433443333
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=7.42 E-value=6.7e+02 Score=21.54 Aligned_cols=18 Identities=17% Similarity=-0.169 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008007 386 VGFAHYLVLFVTLYQRLP 403 (581)
Q Consensus 386 iGl~lylvI~~ii~~RL~ 403 (581)
+.+++++++.+.+++-+-
T Consensus 13 ~~~~~~~~~~a~~~~~~e 30 (139)
T 3eff_K 13 VLLVIVLLAGSYLAVLAE 30 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455555555555443
No 10
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=6.94 E-value=1.9e+02 Score=19.69 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=14.6
Q ss_pred CccccccccchHHHHhhhh
Q 008007 354 NPSSHLSVVGNFVGAILAA 372 (581)
Q Consensus 354 nPSWfLpvVG~~V~A~~Ga 372 (581)
-|+-++|.||.+.-|++-+
T Consensus 4 LPsi~VPlVGlvfPai~Ma 22 (30)
T 3lw5_I 4 LPSLFVPLVGLLFPAVAMA 22 (30)
T ss_dssp CCTTTTCCCCCHHHHHHHH
T ss_pred CcchHHhHHHHHHHHHHHH
Confidence 4888999999987776543
Done!