Query 008007
Match_columns 581
No_of_seqs 183 out of 979
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 15:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008007.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008007hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 11.2 3.1E+02 0.023 23.7 8.0 20 380-399 128-147 (226)
2 d2i5nm1 f.26.1.1 (M:1-323) M ( 5.4 2.7E+02 0.019 26.2 4.5 60 445-511 148-213 (323)
3 d1v54d_ f.23.1.1 (D:) Mitochon 4.8 4.4E+02 0.032 21.8 5.2 21 392-412 88-108 (144)
4 d2axtd1 f.26.1.1 (D:13-352) Ph 4.4 7.6E+02 0.055 23.1 7.2 45 466-510 149-197 (340)
5 d1fx8a_ f.19.1.1 (A:) Glycerol 3.5 1.1E+03 0.083 19.9 11.3 20 266-285 92-111 (254)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 3.3 8.2E+02 0.059 17.9 8.1 17 291-307 38-54 (103)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 3.3 1.2E+03 0.087 19.8 11.7 7 57-63 83-89 (447)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 3.1 3.4E+02 0.025 17.4 2.2 14 257-270 7-20 (36)
9 d2j8cm1 f.26.1.1 (M:1-303) M ( 3.1 5.3E+02 0.039 23.8 4.5 59 446-511 151-215 (303)
10 d1vk8a_ d.58.48.1 (A:) Hypothe 3.0 1.7E+02 0.012 22.6 0.7 19 43-62 73-91 (93)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=11.18 E-value=3.1e+02 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.469 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008007 380 GKFLWAVGFAHYLVLFVTLY 399 (581)
Q Consensus 380 s~~~fgiGl~lylvI~~ii~ 399 (581)
.+..|.+|.+.|+.++-.++
T Consensus 128 ~~~~f~~~~~~f~~i~y~l~ 147 (226)
T d1xioa_ 128 RYLWYICGVCAFLIILWGIW 147 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766655443
No 2
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=5.43 E-value=2.7e+02 Score=26.23 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCccccceeeeechhHHHHHH------HHHHHHhcChhhHHHHHHHHHHHHHHH
Q 008007 445 YFIALFLYVSLVVRINFFTGFRFSVAWWSYTFPMTTASVA------TIKYAEHVPSVLTKGLALSLSFMSSAM 511 (581)
Q Consensus 445 ~g~glf~~lllvv~i~~~~~~~Fs~~WWAfTFPLga~AlA------T~~la~~~~s~~~~~La~vl~ilatli 511 (581)
+..+++.|+++.+.- |.-++=|+.-||.|+++-- .++|++. ....+++++++++.-++++
T Consensus 148 FsaAI~~y~~L~~iR------PilmGsWsea~PyGIf~HLDWt~~fs~~ygN~-~YNPfHmLsIaFlygsaLl 213 (323)
T d2i5nm1 148 FAAAIFFVLCIGCIH------PTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNF-YYCPWHGFSIGFAYGCGLL 213 (323)
T ss_dssp HHHHHHHHHHHHTHH------HHHHTCGGGSCCBSHHHHHHHHHHHHHHTTCG-GGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhe------ecccccchhccccchhhHHHHHHHHHHHhcce-eeCHHHHHHHHHHHHHHHH
Confidence 344556666554432 3445669999999998632 2333333 3346788888877766554
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=4.4e+02 Score=21.82 Aligned_cols=21 Identities=5% Similarity=0.320 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCc
Q 008007 392 LVLFVTLYQRLPTSEALPKEL 412 (581)
Q Consensus 392 lvI~~ii~~RL~~~~~lP~~l 412 (581)
+-+...++.|....+++|..+
T Consensus 88 ~s~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 88 FTALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHHHHHHHTCCCCCGGG
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 333344556776666666644
No 4
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.43 E-value=7.6e+02 Score=23.07 Aligned_cols=45 Identities=4% Similarity=0.000 Sum_probs=25.5
Q ss_pred ccccceeeeechhHHHHHHHHHH----HHhcChhhHHHHHHHHHHHHHH
Q 008007 466 RFSVAWWSYTFPMTTASVATIKY----AEHVPSVLTKGLALSLSFMSSA 510 (581)
Q Consensus 466 ~Fs~~WWAfTFPLga~AlAT~~l----a~~~~s~~~~~La~vl~ilatl 510 (581)
|.-++=|+.-+|.|+++.--... ....-...+++++++...-.++
T Consensus 149 Pi~~Gsw~~~~P~GI~~hldw~~~f~~~~N~~ynPfHml~Ia~~fg~aL 197 (340)
T d2axtd1 149 PLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGAL 197 (340)
T ss_dssp HHHSSSGGGSCCSBSHHHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCccchhhccHHHHHHHhhhhccChHHHHhHHHhhhhHH
Confidence 34456688888888765432221 1122245678888776555443
No 5
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=3.51 E-value=1.1e+03 Score=19.92 Aligned_cols=20 Identities=10% Similarity=0.095 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhchHHHHHH
Q 008007 266 SVSFTYILKCIFYFEAVRRE 285 (581)
Q Consensus 266 ~l~vlyllK~i~~p~~vr~E 285 (581)
.++...+++.+++......+
T Consensus 92 a~~ga~l~~~~~~~~~~~~~ 111 (254)
T d1fx8a_ 92 AFCAAALVYGLYYNLFFDFE 111 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhc
Confidence 33344445555554443333
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.33 E-value=8.2e+02 Score=17.88 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=10.8
Q ss_pred cccccchHHHHHHHHHh
Q 008007 291 RINFFFAPWVVCMFLAI 307 (581)
Q Consensus 291 ~~sFf~T~~Ma~mlLa~ 307 (581)
-.++.-+++-+...+.+
T Consensus 38 ~~s~~~aly~~~vT~tT 54 (103)
T d1r3jc_ 38 LITYPRALWWSVETATT 54 (103)
T ss_dssp CCSHHHHHHHHHHHHTT
T ss_pred cCchhhhhhhheeeecc
Confidence 34566677777776655
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.31 E-value=1.2e+03 Score=19.83 Aligned_cols=7 Identities=43% Similarity=0.677 Sum_probs=3.4
Q ss_pred hhhhhhh
Q 008007 57 EDKVNRR 63 (581)
Q Consensus 57 ~~~~~~~ 63 (581)
-||.+||
T Consensus 83 ~Dr~g~r 89 (447)
T d1pw4a_ 83 SDRSNPR 89 (447)
T ss_dssp HHHSCHH
T ss_pred HHHcCch
Confidence 4555444
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.15 E-value=3.4e+02 Score=17.42 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 008007 257 WLLAVAVLISVSFT 270 (581)
Q Consensus 257 ~~lAl~Lfi~l~vl 270 (581)
..+|.++|+++=..
T Consensus 7 g~iAt~LFilvPt~ 20 (36)
T d2axtm1 7 GLIATALFVLVPSV 20 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544333
No 9
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.07 E-value=5.3e+02 Score=23.82 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCccccceeeeechhHHHHHHH------HHHHHhcChhhHHHHHHHHHHHHHHH
Q 008007 446 FIALFLYVSLVVRINFFTGFRFSVAWWSYTFPMTTASVAT------IKYAEHVPSVLTKGLALSLSFMSSAM 511 (581)
Q Consensus 446 g~glf~~lllvv~i~~~~~~~Fs~~WWAfTFPLga~AlAT------~~la~~~~s~~~~~La~vl~ilatli 511 (581)
..+++.|+++.+.- |.-++=|+.-||.|+++.-- ++|++ .....+++++++++.-.+++
T Consensus 151 ~~aI~~~~~l~~ir------PilmGsW~~a~PyGIf~hLdW~~~fs~~ygN-~~yNPfHmlsIafl~gsaLl 215 (303)
T d2j8cm1 151 LSAIWLWMVLGFIR------PILMGSWSEAVPYGIFSHLDWTNNFSLVHGN-LFYNPFHGLSIAFLYGSALL 215 (303)
T ss_dssp HHHHHHHHHHHTHH------HHHHTCGGGSCCBSHHHHHHHHHHHHHHTTC-GGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhee------eccccchhhccccchHHHHHHHHHHHhhhce-eecChHHHHHHHHHHHhHHH
Confidence 34555555444332 34455689999999876432 22222 23456788888777666554
No 10
>d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
Probab=3.01 E-value=1.7e+02 Score=22.57 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=13.4
Q ss_pred ccccccccccchhhhhhhhh
Q 008007 43 TIRMEDKEKGTIRMEDKVNR 62 (581)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~ 62 (581)
+|++.++..| ++||||+-+
T Consensus 73 ~iKId~R~d~-~t~~~Kv~k 91 (93)
T d1vk8a_ 73 QLDIDYKAGG-ITIEEKVSK 91 (93)
T ss_dssp EEEEEEETTC-CCHHHHHGG
T ss_pred EEEEEecCCC-CcHHHHHhc
Confidence 4667776656 589999863
Done!