Query 008010
Match_columns 581
No_of_seqs 240 out of 668
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 18:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 1.6E-81 3.5E-86 695.8 35.3 375 123-566 14-398 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 3.3E-80 7.2E-85 669.9 31.0 352 135-572 21-385 (493)
3 PTZ00339 UDP-N-acetylglucosami 100.0 1E-71 2.2E-76 604.2 29.0 355 140-570 2-371 (482)
4 cd06424 UGGPase UGGPase cataly 100.0 1.1E-70 2.3E-75 569.0 24.2 266 289-576 1-275 (315)
5 KOG2388 UDP-N-acetylglucosamin 100.0 2.7E-70 5.9E-75 581.9 19.4 354 135-577 2-364 (477)
6 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 4.9E-66 1.1E-70 537.3 25.0 276 278-577 3-282 (323)
7 cd00897 UGPase_euk Eukaryotic 100.0 2.6E-63 5.7E-68 511.7 22.4 247 286-569 1-251 (300)
8 PF01704 UDPGP: UTP--glucose-1 100.0 7.9E-63 1.7E-67 528.4 19.3 300 223-572 2-309 (420)
9 PLN02474 UTP--glucose-1-phosph 100.0 2.6E-59 5.7E-64 504.6 26.0 247 283-566 74-324 (469)
10 COG4284 UDP-glucose pyrophosph 100.0 2.6E-58 5.5E-63 491.3 23.2 277 256-570 73-355 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 3E-54 6.4E-59 438.1 23.0 234 289-548 1-241 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 7.2E-50 1.6E-54 417.7 23.5 319 162-568 26-351 (498)
13 PRK05293 glgC glucose-1-phosph 97.7 0.0026 5.5E-08 67.6 18.3 72 287-379 2-77 (380)
14 cd02540 GT2_GlmU_N_bac N-termi 97.5 0.0057 1.2E-07 59.6 16.6 102 292-451 2-104 (229)
15 PRK00844 glgC glucose-1-phosph 97.4 0.0096 2.1E-07 64.4 19.0 206 285-548 2-212 (407)
16 cd04197 eIF-2B_epsilon_N The N 97.4 0.00096 2.1E-08 65.5 10.3 124 291-465 3-129 (217)
17 PRK14356 glmU bifunctional N-a 97.4 0.0034 7.3E-08 68.2 15.5 107 288-451 5-112 (456)
18 cd06915 NTP_transferase_WcbM_l 97.4 0.012 2.7E-07 56.5 17.7 61 292-373 2-65 (223)
19 PRK05450 3-deoxy-manno-octulos 97.3 0.024 5.3E-07 56.2 19.3 188 288-548 2-194 (245)
20 cd04181 NTP_transferase NTP_tr 97.3 0.007 1.5E-07 58.1 14.9 175 292-545 2-179 (217)
21 cd02509 GDP-M1P_Guanylyltransf 97.3 0.0043 9.3E-08 63.8 13.9 64 291-372 3-70 (274)
22 PRK14352 glmU bifunctional N-a 97.3 0.01 2.3E-07 65.4 17.7 64 288-372 4-67 (482)
23 cd02517 CMP-KDO-Synthetase CMP 97.3 0.024 5.3E-07 56.0 18.5 103 289-451 2-104 (239)
24 PRK15480 glucose-1-phosphate t 97.3 0.013 2.9E-07 61.1 17.3 113 288-453 3-118 (292)
25 PRK02862 glgC glucose-1-phosph 97.2 0.016 3.5E-07 63.2 18.3 66 288-374 3-72 (429)
26 PF00483 NTP_transferase: Nucl 97.2 0.0027 5.9E-08 62.6 10.8 184 292-547 3-191 (248)
27 PRK14360 glmU bifunctional N-a 97.2 0.015 3.3E-07 63.0 17.0 63 289-372 2-64 (450)
28 TIGR02092 glgD glucose-1-phosp 97.2 0.0092 2E-07 63.3 15.0 71 288-379 2-77 (369)
29 PRK14359 glmU bifunctional N-a 97.2 0.019 4.1E-07 61.7 17.5 105 289-451 3-107 (430)
30 cd02508 ADP_Glucose_PP ADP-glu 97.1 0.0062 1.3E-07 59.0 12.4 115 292-448 2-122 (200)
31 PLN02241 glucose-1-phosphate a 97.0 0.028 6.2E-07 61.5 17.6 216 287-548 2-231 (436)
32 PRK14358 glmU bifunctional N-a 97.0 0.028 6E-07 62.4 17.2 64 287-371 6-69 (481)
33 TIGR01207 rmlA glucose-1-phosp 97.0 0.028 6.1E-07 58.5 16.2 110 291-453 2-114 (286)
34 PRK14355 glmU bifunctional N-a 96.9 0.023 5E-07 62.1 16.0 64 288-372 3-66 (459)
35 cd04189 G1P_TT_long G1P_TT_lon 96.9 0.002 4.2E-08 63.4 7.0 68 290-378 2-72 (236)
36 cd06425 M1P_guanylylT_B_like_N 96.9 0.062 1.3E-06 53.1 17.2 61 291-372 3-66 (233)
37 TIGR00454 conserved hypothetic 96.9 0.0014 3.1E-08 63.7 5.4 61 290-372 2-62 (183)
38 TIGR01208 rmlA_long glucose-1- 96.9 0.045 9.8E-07 57.7 16.7 68 291-378 2-72 (353)
39 PRK00725 glgC glucose-1-phosph 96.8 0.054 1.2E-06 59.2 17.8 201 287-547 14-223 (425)
40 cd06428 M1P_guanylylT_A_like_N 96.8 0.077 1.7E-06 53.4 17.6 129 292-473 2-136 (257)
41 TIGR02091 glgC glucose-1-phosp 96.7 0.053 1.2E-06 57.1 16.2 60 292-372 2-65 (361)
42 COG2266 GTP:adenosylcobinamide 96.7 0.0029 6.2E-08 61.9 6.1 60 290-373 2-62 (177)
43 PRK14357 glmU bifunctional N-a 96.7 0.041 8.8E-07 59.7 15.5 174 291-547 3-178 (448)
44 cd02524 G1P_cytidylyltransfera 96.7 0.09 1.9E-06 52.9 16.7 65 292-377 2-69 (253)
45 PRK13385 2-C-methyl-D-erythrit 96.7 0.0034 7.4E-08 62.3 6.4 66 289-373 3-68 (230)
46 cd06422 NTP_transferase_like_1 96.7 0.0043 9.3E-08 60.6 6.9 65 292-378 3-70 (221)
47 TIGR01105 galF UTP-glucose-1-p 96.7 0.0048 1E-07 64.6 7.6 64 288-372 3-69 (297)
48 COG0746 MobA Molybdopterin-gua 96.6 0.0049 1.1E-07 60.9 6.7 99 288-452 4-102 (192)
49 cd04182 GT_2_like_f GT_2_like_ 96.5 0.0048 1E-07 57.7 5.9 50 289-358 1-50 (186)
50 PLN02728 2-C-methyl-D-erythrit 96.5 0.0043 9.2E-08 63.6 5.6 43 287-336 23-65 (252)
51 PRK10122 GalU regulator GalF; 96.5 0.0091 2E-07 62.3 8.1 64 287-371 2-68 (297)
52 cd06426 NTP_transferase_like_2 96.4 0.0088 1.9E-07 58.0 7.3 65 292-377 2-69 (220)
53 COG1213 Predicted sugar nucleo 96.4 0.0061 1.3E-07 62.2 6.2 67 289-375 4-70 (239)
54 PF01128 IspD: 2-C-methyl-D-er 96.4 0.0039 8.4E-08 62.9 4.8 65 289-372 1-65 (221)
55 TIGR02623 G1P_cyt_trans glucos 96.4 0.26 5.6E-06 49.9 17.8 144 291-471 2-149 (254)
56 cd02538 G1P_TT_short G1P_TT_sh 96.2 0.014 3.1E-07 57.9 7.5 68 291-378 3-73 (240)
57 TIGR01479 GMP_PMI mannose-1-ph 96.2 0.045 9.7E-07 60.8 12.0 63 291-372 3-69 (468)
58 PRK00560 molybdopterin-guanine 96.2 0.005 1.1E-07 60.1 4.0 39 288-335 8-47 (196)
59 COG1207 GlmU N-acetylglucosami 96.1 0.12 2.5E-06 57.0 14.4 186 288-548 2-188 (460)
60 cd02513 CMP-NeuAc_Synthase CMP 96.0 0.14 3.1E-06 49.6 13.5 38 288-335 1-38 (223)
61 TIGR03310 matur_ygfJ molybdenu 96.0 0.01 2.3E-07 56.0 5.4 48 291-358 2-49 (188)
62 TIGR01173 glmU UDP-N-acetylglu 96.0 0.011 2.4E-07 63.8 6.2 61 291-372 3-63 (451)
63 PRK14353 glmU bifunctional N-a 96.0 0.011 2.5E-07 64.0 6.3 65 287-372 4-68 (446)
64 PRK13368 3-deoxy-manno-octulos 95.9 0.081 1.8E-06 52.2 11.2 102 288-451 2-103 (238)
65 cd02503 MobA MobA catalyzes th 95.9 0.0065 1.4E-07 57.4 3.2 48 290-358 2-49 (181)
66 PF12804 NTP_transf_3: MobA-li 95.8 0.0067 1.5E-07 56.0 2.9 48 291-358 1-48 (160)
67 TIGR00453 ispD 2-C-methyl-D-er 95.7 0.0081 1.8E-07 58.6 3.3 38 291-335 2-39 (217)
68 cd04198 eIF-2B_gamma_N The N-t 95.7 0.026 5.6E-07 55.5 6.7 63 291-373 3-68 (214)
69 TIGR03202 pucB xanthine dehydr 95.7 0.01 2.3E-07 56.8 3.8 37 290-335 2-38 (190)
70 PLN02917 CMP-KDO synthetase 95.5 0.31 6.6E-06 51.1 14.2 105 288-452 47-151 (293)
71 TIGR02665 molyb_mobA molybdopt 95.5 0.012 2.6E-07 55.8 3.5 38 289-334 1-38 (186)
72 PRK02726 molybdopterin-guanine 95.5 0.012 2.6E-07 57.5 3.5 39 288-335 7-45 (200)
73 TIGR01099 galU UTP-glucose-1-p 95.5 0.022 4.8E-07 57.1 5.4 61 291-372 3-66 (260)
74 cd02516 CDP-ME_synthetase CDP- 95.5 0.011 2.4E-07 57.3 3.2 39 290-335 2-40 (218)
75 COG1209 RfbA dTDP-glucose pyro 95.4 0.27 5.9E-06 51.5 13.2 111 292-455 4-118 (286)
76 PRK00155 ispD 2-C-methyl-D-ery 95.3 0.015 3.2E-07 57.4 3.6 41 288-335 3-43 (227)
77 PRK00317 mobA molybdopterin-gu 95.3 0.017 3.6E-07 55.6 3.8 40 287-334 2-41 (193)
78 PRK14490 putative bifunctional 95.2 0.028 6E-07 60.4 5.5 39 288-335 174-212 (369)
79 COG1208 GCD1 Nucleoside-diphos 95.2 0.058 1.3E-06 57.9 7.8 77 290-390 3-82 (358)
80 PRK14489 putative bifunctional 95.0 0.024 5.3E-07 60.9 4.2 42 286-335 3-44 (366)
81 cd02541 UGPase_prokaryotic Pro 94.9 0.045 9.8E-07 55.2 5.8 61 291-372 3-66 (267)
82 cd02523 PC_cytidylyltransferas 94.8 0.064 1.4E-06 52.7 6.3 60 292-372 2-64 (229)
83 PRK09451 glmU bifunctional N-a 94.6 0.051 1.1E-06 59.3 5.8 63 288-371 5-67 (456)
84 cd02507 eIF-2B_gamma_N_like Th 94.6 0.076 1.6E-06 52.4 6.4 64 291-375 3-69 (216)
85 PRK14500 putative bifunctional 94.6 0.031 6.8E-07 60.0 3.9 39 288-335 160-198 (346)
86 PRK09382 ispDF bifunctional 2- 94.3 0.036 7.8E-07 60.2 3.6 43 287-336 4-46 (378)
87 COG1211 IspD 4-diphosphocytidy 94.2 0.1 2.3E-06 53.2 6.5 65 288-371 4-68 (230)
88 PRK14354 glmU bifunctional N-a 94.2 0.067 1.4E-06 58.2 5.4 62 289-371 3-64 (458)
89 cd04183 GT2_BcE_like GT2_BcbE_ 93.8 0.045 9.7E-07 53.7 2.8 37 292-335 2-41 (231)
90 PRK13389 UTP--glucose-1-phosph 93.3 0.14 3E-06 53.7 5.7 61 291-372 11-74 (302)
91 TIGR00466 kdsB 3-deoxy-D-manno 92.8 0.34 7.3E-06 48.9 7.4 90 291-397 2-104 (238)
92 KOG1322 GDP-mannose pyrophosph 91.6 7.8 0.00017 42.0 15.9 187 287-548 8-199 (371)
93 cd02518 GT2_SpsF SpsF is a gly 90.2 0.63 1.4E-05 46.1 6.1 61 291-372 2-62 (233)
94 PRK15460 cpsB mannose-1-phosph 89.9 0.41 8.9E-06 53.7 5.0 65 289-372 6-74 (478)
95 COG0836 {ManC} Mannose-1-phosp 87.3 0.82 1.8E-05 48.9 4.9 65 290-372 3-71 (333)
96 COG0448 GlgC ADP-glucose pyrop 85.1 13 0.00028 41.1 12.6 199 287-549 4-210 (393)
97 COG1210 GalU UDP-glucose pyrop 83.1 1.7 3.8E-05 45.7 4.9 60 291-371 7-69 (291)
98 COG4750 LicC CTP:phosphocholin 79.9 1.5 3.2E-05 44.3 2.9 60 291-372 3-65 (231)
99 TIGR03584 PseF pseudaminic aci 76.1 47 0.001 33.3 12.4 58 291-373 2-59 (222)
100 COG2068 Uncharacterized MobA-r 74.1 3.8 8.3E-05 41.2 4.0 39 288-335 5-43 (199)
101 PF14134 DUF4301: Domain of un 56.8 11 0.00024 42.7 3.8 60 382-451 235-297 (513)
102 COG1861 SpsF Spore coat polysa 56.3 22 0.00047 36.8 5.4 59 301-375 11-69 (241)
103 KOG1460 GDP-mannose pyrophosph 46.2 2.8E+02 0.0061 30.3 11.8 161 291-512 5-172 (407)
104 PF02348 CTP_transf_3: Cytidyl 37.5 30 0.00064 33.5 3.0 85 301-397 7-105 (217)
105 KOG0734 AAA+-type ATPase conta 34.9 27 0.00059 40.4 2.5 118 300-456 330-456 (752)
106 PLN03014 carbonic anhydrase 24.3 1.1E+02 0.0023 33.6 4.6 14 80-93 83-96 (347)
107 PF00845 Gemini_BL1: Geminivir 22.8 51 0.0011 34.5 1.8 16 529-544 81-98 (276)
108 COG4898 Uncharacterized protei 21.4 95 0.0021 28.3 3.0 29 77-105 86-114 (115)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=1.6e-81 Score=695.76 Aligned_cols=375 Identities=25% Similarity=0.325 Sum_probs=328.8
Q ss_pred chhHHhhccCCccHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHH
Q 008010 123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKD 202 (581)
Q Consensus 123 ~~~~~~~~~l~~~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e 202 (581)
+++.+++..|++++++|++.|.++||+|||++ |++.+ +++ ++
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~---w~~l~--------------------------------~~~---~e 55 (615)
T PLN02830 14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEH---WPEPG--------------------------------VDD---DD 55 (615)
T ss_pred cccccccccCChhHHHHHHHHHHcCcHHHHhh---hhccC--------------------------------CCH---HH
Confidence 68999999999999999999999999999999 99811 244 48
Q ss_pred HHHHHHHHHHhhccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-c-CCCCcccccCchHHHHHHH
Q 008010 203 LNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQAAL 280 (581)
Q Consensus 203 k~~Ll~qL~~id~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~-vP~g~~ls~~~~~~~~~~~ 280 (581)
|++|++||..+|..|+ ||+.+|+.++.+++.++.+ .. ++|+.+ | +|.+..+++.+......++
T Consensus 56 ~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~---~~----------~~~~~i~P~vp~~~~~~~~~~~~~~~~~ 120 (615)
T PLN02830 56 KRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE---GV----------NPFEGWTPSVPEGEVLEYGSEEFVELEE 120 (615)
T ss_pred HHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc---CC----------CchhhcccCCCccccccccchhhhHHHH
Confidence 9999999999999995 9999999999999986521 11 256665 5 5888888876655555667
Q ss_pred HHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcC-CcccceEEEecCCC
Q 008010 281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSA 359 (581)
Q Consensus 281 ~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g-~~~~IPl~IMTS~~ 359 (581)
+|.+.|.++|+|+||||||||||+++||+ +|||++ + +|+||||++++||+++|++|.++.+ ..+.||||||||+
T Consensus 121 ~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~-~-~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~- 195 (615)
T PLN02830 121 AGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTET-A-TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD- 195 (615)
T ss_pred HHHHHhCcEEEEEecCCcccccCCCCCCc--ceeccc-C-CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc-
Confidence 89999999999999999999999999999 999984 4 6999999999999999999977553 5589999999999
Q ss_pred CCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCcccccc--CCCccccCCCCcHHHHHHHhcCchHHHHHcCc
Q 008010 360 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR 437 (581)
Q Consensus 360 ~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~--~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gi 437 (581)
+||++|++||++|+|||++++||+||+|+++||+++++|++++++ +++++|+||||||||.||+++|+||+|+++|+
T Consensus 196 -~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~ 274 (615)
T PLN02830 196 -DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGK 274 (615)
T ss_pred -chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCC
Confidence 699999999999999999999999999999999998889999987 88999999999999999999999999999999
Q ss_pred eEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCC---
Q 008010 438 KGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF--- 513 (581)
Q Consensus 438 kyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~--- 513 (581)
||+|||||||+|++ +||. |+|+++.++.++++++|+| .+.|.+|++|..++.||++ +++||||+|++++
T Consensus 275 ~yi~v~~vDN~L~~~Adp~---flG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~ 347 (615)
T PLN02830 275 KWVVFFQDTNGLVFKAIPA---ALGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRA 347 (615)
T ss_pred EEEEEEeccchhhhcccHH---HhHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHh
Confidence 99999999999999 9987 5999999999999997665 5567777878766678873 5689999999986
Q ss_pred -CCCCCCCCCCCcccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCc
Q 008010 514 -GITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPI 566 (581)
Q Consensus 514 -~~~~~~~~dg~l~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkI 566 (581)
..++++..+++.+|+||+||||+|++|+.|+++++. ....||.+| +.|.+
T Consensus 348 a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~iv--NpK~~ 398 (615)
T PLN02830 348 TGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEFV--NPKYK 398 (615)
T ss_pred ccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCccceec--cCccc
Confidence 234455556788999999999999999999999985 677899988 77855
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=3.3e-80 Score=669.93 Aligned_cols=352 Identities=20% Similarity=0.291 Sum_probs=301.9
Q ss_pred cHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHhh
Q 008010 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (581)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~id 214 (581)
+...|++.|.++||+|||++ |++ |+++ +|++|++||..+|
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~---w~~----------------------------------ls~~---e~~~L~~qL~~iD 60 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFAL---WDE----------------------------------LSPE---ERDLLVRDIESLD 60 (493)
T ss_pred cHHHHHHHHHHcChHHHHHh---hhh----------------------------------CCHH---HHHHHHHHHHhcC
Confidence 56679999999999999999 998 7775 8999999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccccCc---hHHHHHHHHHHhcc--Cc
Q 008010 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNT---EYAAQAALWGIEGL--PE 288 (581)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~---~~~~~~~~~G~e~L--~k 288 (581)
..| +. ..+++++..+ .. +++.+ |+|.+...++.+ ...+..++.|.+.+ .+
T Consensus 61 ~~~-----l~---~~~~~~~~~~-----~~-----------~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gk 116 (493)
T PLN02435 61 LPR-----ID---RIIRCSLRSQ-----GL-----------PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGK 116 (493)
T ss_pred HHH-----HH---HHHHHHhhcc-----CC-----------chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCC
Confidence 754 22 3344444211 10 23344 667666655533 22233445678887 58
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcC----CcccceEEEecCCCCCchH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG----KQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g----~~~~IPl~IMTS~~~~The 364 (581)
+|+|+||||||||||+++||| ||||| +|+ +|||||+++|||+++|++|.+++| ..+.||||||||+ .||+
T Consensus 117 vavvlLAGGqGTRLG~~~PKg--~~~Ig-lps-~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~--~T~~ 190 (493)
T PLN02435 117 LAVVLLSGGQGTRLGSSDPKG--CFNIG-LPS-GKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSP--FTDE 190 (493)
T ss_pred EEEEEeCCCcccccCCCCCcc--ceecC-CCC-CCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCc--chhH
Confidence 999999999999999999999 99999 775 999999999999999999987654 4578999999999 5999
Q ss_pred HHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 008010 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (581)
Q Consensus 365 ~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (581)
+|++||++|+|||++++||+||+|+++||++.+ |+++|+++++++|+|+||||||.||+++|+|++|+++|||||||||
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~d-g~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKD-GKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCC-CCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 999999999999999999999999999999966 9999999999999999999999999999999999999999999999
Q ss_pred CCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCC-
Q 008010 445 VSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS- 522 (581)
Q Consensus 445 vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~d- 522 (581)
|||+|++ +||. |+|+++..+.+++++ |+||+.++|++|++|.. ..||+ +++||||||++ ++++.++++
T Consensus 270 vDN~L~~~~DP~---flG~~~~~~~d~~~k-Vv~K~~~~EkvG~i~~~-~~~g~----~~vvEYsEl~~-~~~~~~~~~~ 339 (493)
T PLN02435 270 VDNALVRVADPT---FLGYFIDKGVASAAK-VVRKAYPQEKVGVFVRR-GKGGP----LTVVEYSELDQ-AMASAINQQT 339 (493)
T ss_pred cccccccccCHH---HHHHHHhcCCceEEE-eeecCCCCCceeEEEEe-cCCCC----EEEEEeccCCH-HHHhccCccc
Confidence 9999998 9999 599999999999988 69999999999999863 25788 89999999999 476665554
Q ss_pred CCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCC
Q 008010 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF 572 (581)
Q Consensus 523 g~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~ 572 (581)
|++. |++ ||+||||+++||+++++. ++..||||+ |+|||||+|..
T Consensus 340 g~L~--~~~gnI~~h~fs~~fL~~~~~~-~~~~l~~H~--A~Kkip~~~~~ 385 (493)
T PLN02435 340 GRLR--YCWSNVCLHMFTLDFLNQVANG-LEKDSIYHL--AEKKIPSIHGY 385 (493)
T ss_pred cccc--cchhhHHHhhccHHHHHHHHHh-hhhcCCcee--eccccCccCCC
Confidence 9988 998 999999999999999864 556799999 99999999943
No 3
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1e-71 Score=604.23 Aligned_cols=355 Identities=19% Similarity=0.219 Sum_probs=290.7
Q ss_pred HHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHH-H---Hhhc
Q 008010 140 IKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTL-A---EIEQ 215 (581)
Q Consensus 140 ~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL-~---~id~ 215 (581)
++.|.++||+|||++ |++ |+++ +|.+|.+|| + .+|.
T Consensus 2 ~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---e~~~l~~ql~~~~~~~d~ 41 (482)
T PTZ00339 2 LKVLTGDGQDHLREA---LKR----------------------------------RSEG---EFTPLATQILSSLTNVDF 41 (482)
T ss_pred hhhhhhcCHHHHHHH---HHh----------------------------------CCHH---HHHHHHHHHHHHhhccCH
Confidence 468999999999999 998 7775 999999999 6 4553
Q ss_pred cccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccccCc--hHHHHHHHHHHhccCc--ee
Q 008010 216 FYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNT--EYAAQAALWGIEGLPE--LG 290 (581)
Q Consensus 216 ~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~--~~~~~~~~~G~e~L~k--ia 290 (581)
.-++..++.+......+....++.++. . -..+ |+|.....+..+ ......++.|.+.+++ +|
T Consensus 42 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkva 108 (482)
T PTZ00339 42 -----KHRNAVLEPKLEEYNAEAPVGIDIDSI--H------NCNIEPPNNNTFIDIYEKEKERKELKESGLEIIKKGEVA 108 (482)
T ss_pred -----HHHHHHHHHHhhhhhcccccccccccc--c------ccccCCCCcccccccccCHHHHHHHHHhHHHHHhcCCeE
Confidence 345556666554332221000000000 0 0123 566544444432 3344556788888885 99
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcC--CcccceEEEecCCCCCchHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g--~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+|+||||||||||++.||+ ++||+ +|+ ++||||++++||+++|.++.+++| ..+.||||||||+. ||+.|++
T Consensus 109 vViLAGG~GTRLg~~~PK~--ll~I~-~~~-gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~--t~~~t~~ 182 (482)
T PTZ00339 109 VLILAGGLGTRLGSDKPKG--LLECT-PVK-KKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSF--NHDQTRQ 182 (482)
T ss_pred EEEECCCCcCcCCCCCCCe--Eeeec-CCC-CccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcc--hHHHHHH
Confidence 9999999999999999999 99998 554 999999999999999998876665 34689999999994 9999999
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
||++|+|||++++||+||+|+++||++.++|+++++++++++|+|+||||||.+|+++|+|++|+++||||||||||||+
T Consensus 183 ~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 183 FLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred ccc-cchhhHHHhhhhhhcCC-ceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCC-CCCc
Q 008010 449 VAA-TDLTLLALAGIGLHHGK-KLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS-SNGL 525 (581)
Q Consensus 449 Lak-~DP~~~~~lG~~~~~~~-~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~-dg~l 525 (581)
|++ +||. |+|+++..+. +++.+ |+ |+.++|++|++|.+ ||+ +++|||+||++. .++.++. +|.+
T Consensus 263 L~k~~DP~---flG~~~~~~~~~~~~k-vv-k~~~~EkvG~~~~~---~g~----~~vvEYsEi~~~-~~~~~~~~~g~l 329 (482)
T PTZ00339 263 LAKVLDPE---FIGLASSFPAHDVLNK-CV-KREDDESVGVFCLK---DYE----WQVVEYTEINER-ILNNDELLTGEL 329 (482)
T ss_pred cccccCHH---HhHHHHHCCchhheee-ee-cCCCCCceeEEEEe---CCc----ccEEEEeccChh-hhhcccccCCee
Confidence 999 9999 5999999888 67666 45 77889999999875 777 789999999994 6665554 3665
Q ss_pred ccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccC
Q 008010 526 QADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMD 570 (581)
Q Consensus 526 ~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D 570 (581)
. |.+ |||||||+++||++++++.....||||+ |+|||||+|
T Consensus 330 ~--f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~--a~Kkip~~~ 371 (482)
T PTZ00339 330 A--FNYGNICSHIFSLDFLKKVAANRLYESTPYHA--ARKKIPYIN 371 (482)
T ss_pred c--ccccceEEEEEEHHHHHHHhhhhhhhcCCcee--eccccCeeC
Confidence 4 777 9999999999999998643556799999 999999999
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.1e-70 Score=568.99 Aligned_cols=266 Identities=21% Similarity=0.257 Sum_probs=232.0
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+|+|+||||||||||+++||| +|||+ +| +++||||+++|||+++|++|.+.++ +.||||||||+ +||++|++
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg--~~~v~-~~-~~~s~f~l~~~~i~~l~~~~~~~~~--~~IPl~IMTS~--~Th~~T~~ 72 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKI--GLPVE-LT-TNTTYLQYYLNYIRAFQEASKKGEK--MEIPFVIMTSD--DTHSKTLK 72 (315)
T ss_pred CEEEEecCCCccccCCCCCce--eeecc-CC-CCCcHHHHHHHHHHHHHHHhhccCC--CceeEEEECCC--chhHHHHH
Confidence 488999999999999999999 99998 55 4999999999999999999876444 79999999999 69999999
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCcc--ccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQW--LVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gki--ll~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (581)
||++|+|||++++||+||+|+++||+++.+|++ .++++++++|+|+||||||+||+++|+||+|+++|+||++|||||
T Consensus 73 ~fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vd 152 (315)
T cd06424 73 LLEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDT 152 (315)
T ss_pred HHHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecc
Confidence 999999999999999999999999998666999 578999999999999999999999999999999999999999999
Q ss_pred Ccccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCC-----CC
Q 008010 447 NVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG-----PF 520 (581)
Q Consensus 447 N~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~-----~~ 520 (581)
|+|++ +||. |+|+++.++.++++++|+|++ .|+||++|...+.||+ +.++|||||||+++ +++. +.
T Consensus 153 N~L~~~adP~---fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~--~~v~nvEYsel~~~-~~~~~~~~g~~ 224 (315)
T cd06424 153 NALAFKAIPA---VLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGK--SMTINVEYNQLDPL-LRASGKDDGDV 224 (315)
T ss_pred hhhhhccChh---hEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCc--eEEEEEEeecCCHH-HHhcCCCCCCc
Confidence 99999 9998 599999999999999876544 5777887765557888 45677999999984 4332 33
Q ss_pred CCCCcccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCC-CCee
Q 008010 521 SSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF-GDTH 576 (581)
Q Consensus 521 ~dg~l~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~-G~~~ 576 (581)
++...+|+||||||+|+|++++|.++++. ....+|+| ++++|.|.+ |...
T Consensus 225 ~~~~~~s~f~gNi~~~~f~l~~~~~~l~~-~~~~~~~~-----~n~ky~d~~~~~~~ 275 (315)
T cd06424 225 DDKTGFSPFPGNINQLVFSLGPYMDELEK-TKGAIPEF-----INPKYKDATKTAFK 275 (315)
T ss_pred ccccccccCCCeeeeEEEeHHHHHHHHhh-ccccCeee-----ecCCcccCCCCeec
Confidence 34567899999999999999999999985 33445555 579999964 6544
No 5
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.7e-70 Score=581.88 Aligned_cols=354 Identities=21% Similarity=0.302 Sum_probs=300.3
Q ss_pred cHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHhh
Q 008010 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIE 214 (581)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~id 214 (581)
+..++...|.++||+|||.+ |++ |+++ ++..|++|++.++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~---w~e----------------------------------L~~~---~~~~l~~~ie~l~ 41 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQ---WPE----------------------------------LSEA---DKESLLDQIEVLN 41 (477)
T ss_pred chhHHHHHHHHcChHhHhhh---chh----------------------------------cCHH---HHHHHHHHHHhhc
Confidence 56778899999999999999 999 7665 7779999999999
Q ss_pred ccccCCCchHHHHHHHHHHHHhchhcccccccccccccccccccc-ccCCCCcccccCchHHHHHHHHHHhccC-----c
Q 008010 215 QFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE-IHVPSGLDLSQNTEYAAQAALWGIEGLP-----E 288 (581)
Q Consensus 215 ~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~-~~vP~g~~ls~~~~~~~~~~~~G~e~L~-----k 288 (581)
..+ ++|+.. ..|.+.. + +-.. .|+|+................|+.+++. +
T Consensus 42 l~~--~~~~~~--~~a~~~~--~------------------~~~~~~p~p~~~~~~~~~~~~~d~d~~~~~G~~~i~~~~ 97 (477)
T KOG2388|consen 42 LSR--IHGLQR--ISANEDS--K------------------PVGEIRPVPESKSWPLKERGLDDVDQWWKEGLRLIAEGK 97 (477)
T ss_pred ccc--cchhhh--cChhhcc--C------------------cccccCCCCccccceecccCchhhhHHHhcChhhhhcCc
Confidence 877 465543 2222221 1 0012 3666655543322222222236666665 5
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+|++++|||||||||+++||| |||+| +|+ ++||||+|+|+|+++|++|....+.++.||||||||+ .|++.|++
T Consensus 98 ~a~~llaGgqgtRLg~~~pkg--~~~~G-~~~-~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~--~T~e~T~~ 171 (477)
T KOG2388|consen 98 VAVVLLAGGQGTRLGSSGPKG--CYPIG-LPS-GKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSA--FTHEATLE 171 (477)
T ss_pred ceEEEeccCceeeeccCCCcc--eeecC-Ccc-ccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCC--CccHHhHh
Confidence 788999999999999999999 99999 666 9999999999999999999988877799999999999 49999999
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
||+.|+||||.++||+||+|+++||++.+ |+++|+.+.+++++|+||||+|+|+.++ |++|.+||++|+|||||||+
T Consensus 172 ~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~-gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 172 YFESHKYFGLKPEQVTFFQQGKLPCLDLD-GKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HHhhcCCCCCChhHeeeeecccccccccC-CceeccCccchhcCCCCCcHHHHHHHhh--hhHHHhhcccEEEEEEecce
Confidence 99999999999999999999999999988 8899999999999999999999999998 99999999999999999999
Q ss_pred ccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCC-CccccceEEEEecccCCCCCCCCCCCC-CCc
Q 008010 449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLD-GKWAYGLSCIEYTEFDKFGITRGPFSS-NGL 525 (581)
Q Consensus 449 Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~d-Gke~~gv~~VEYsEl~~~~~~~~~~~d-g~l 525 (581)
|++ +||+ |+|+++.++++++.+ +|+|.++.|-+|+++.+ + |. +++|||||+++ +++.....+ |.+
T Consensus 249 L~k~aDP~---fiG~~it~~~d~~~k-~V~k~~p~E~vG~~~~~---~~G~----~~vvEYsEi~~-~~a~~~~~d~g~l 316 (477)
T KOG2388|consen 249 LLKVADPV---FIGFSITKEADVAAK-VVPKINPGEVVGIVALK---GQGT----PLVVEYSELDA-ELAKAKAPDGGRL 316 (477)
T ss_pred eeEecccc---eeeEEeechhhHhhh-hccccCCCCceEEEEec---CCCc----eeEEEecccCH-HHHhhcccccCcc
Confidence 999 9999 599999999999988 57788888989998875 4 77 99999999999 588888888 555
Q ss_pred ccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCCCCeee
Q 008010 526 QADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHR 577 (581)
Q Consensus 526 ~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~G~~~~ 577 (581)
.++++|||||||+++||+++... ....||+|+ |.|||||+|.+|.+++
T Consensus 317 -~~~agnI~nh~ft~dFLkk~~~~-~~~~lp~H~--a~kKip~~~~~g~~~k 364 (477)
T KOG2388|consen 317 -LFNAGNICNHFFTLDFLKKVTRA-SVPLLPYHK--AEKKIPYVDSTGKLVK 364 (477)
T ss_pred -ccCCccHHHHHHhhHHHHHhhhc-ccccchhhh--hhccccccccCCcccC
Confidence 44555999999999999999886 677799999 9999999999888764
No 6
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=4.9e-66 Score=537.34 Aligned_cols=276 Identities=25% Similarity=0.383 Sum_probs=252.4
Q ss_pred HHHHHHhccC--ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEe
Q 008010 278 AALWGIEGLP--ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIM 355 (581)
Q Consensus 278 ~~~~G~e~L~--kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IM 355 (581)
+++.|.+.++ ++|+|+||||+|||||+++||+ ++||+ +| +++||||+++++|++++.++.+.+|+.+.||||||
T Consensus 3 ~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~--l~pv~-~~-~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~im 78 (323)
T cd04193 3 WEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKG--MFPVG-LP-SKKSLFQLQAERILKLQELAGEASGKKVPIPWYIM 78 (323)
T ss_pred HHHHhHHHHhcCCEEEEEECCCcccccCCCCCeE--EEEec-CC-CCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 3467899998 8999999999999999999999 99998 45 49999999999999999999888888889999999
Q ss_pred cCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHc
Q 008010 356 TSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDN 435 (581)
Q Consensus 356 TS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~ 435 (581)
||+ .||+.|++||++++|||+++++|+||+|+++||++.+ |+++++++++++|+|+||||||.+|+++|+|++|+++
T Consensus 79 tS~--~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~-g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~ 155 (323)
T cd04193 79 TSE--ATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFD-GKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKR 155 (323)
T ss_pred cCh--hHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCC-CccccCCCCccccCCCCchHHHHHHHHCChHHHHHhC
Confidence 998 4999999999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCC
Q 008010 436 GRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG 514 (581)
Q Consensus 436 Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~ 514 (581)
|+|||+|+||||+|++ +||. |+|+++..+.+++++ |++|+.++|++|++|.. ||+ +++|||+|+++ +
T Consensus 156 G~~yi~v~~vDN~L~~~~Dp~---~lG~~~~~~~~~~~k-vv~k~~~~ekvG~l~~~---~g~----~~vvEysel~~-~ 223 (323)
T cd04193 156 GIKYIHVYSVDNILVKVADPV---FIGFCISKGADVGAK-VVRKRYPTEKVGVVVLV---DGK----PQVVEYSEISD-E 223 (323)
T ss_pred CCEEEEEEecCcccccccCHH---HhHHHHHcCCceEEE-EEECCCCCCceeEEEEE---CCe----EEEEEeecCCH-H
Confidence 9999999999999998 9998 599999999888888 57789999999999975 899 89999999999 4
Q ss_pred CCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCCCCeee
Q 008010 515 ITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHR 577 (581)
Q Consensus 515 ~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~G~~~~ 577 (581)
.++..+++|++. |++ ||++++|+++||+++++. ....||+|+ |+|||||+|.+|..++
T Consensus 224 ~~~~~~~~g~l~--f~~~ni~~~~fsl~fl~~~~~~-~~~~l~~h~--a~Kki~~~d~~~~~~~ 282 (323)
T cd04193 224 LAEKRDADGELQ--YNAGNIANHFFSLDFLEKAAEM-EEPSLPYHI--AKKKIPYVDLEGGLVK 282 (323)
T ss_pred HHhccCcCCcEe--cccchHhhheeCHHHHHHHHhh-ccccCCceE--eccccCcccCcCcEec
Confidence 777777788886 655 999999999999999875 344799999 9999999998877543
No 7
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=2.6e-63 Score=511.66 Aligned_cols=247 Identities=21% Similarity=0.248 Sum_probs=221.8
Q ss_pred cCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 286 L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
|.++|+|+||||||||||+++||| +|||. +++||||++++||+++++ .+| +.||||||||+ +||++
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg--~~~v~----~~~s~l~l~~~~i~~l~~----~~~--~~iPl~iMtS~--~T~~~ 66 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKS--LIEVR----DGKTFLDLTVQQIEHLNK----TYG--VDVPLVLMNSF--NTDED 66 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHHHHH----HcC--CCceEEEECCC--cchHH
Confidence 578999999999999999999999 99983 599999999999999984 566 78999999999 59999
Q ss_pred HHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccc---cCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 008010 366 ITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVM---RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (581)
Q Consensus 366 T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~---~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (581)
|++||++|++ +++||++|+|+++||++.+ |++.++ ++++++|+|+||||+|.+|+++|+|++|+++|+||++|
T Consensus 67 T~~~l~~~~~---~~~~v~~F~Q~~~P~~~~~-~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v 142 (300)
T cd00897 67 TKKILKKYAG---VNVDIHTFNQSRYPRISKE-TLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFV 142 (300)
T ss_pred HHHHHHHcCC---CccCeEEEecCCcccCccc-cCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 9999999886 7899999999999999987 888887 88999999999999999999999999999999999999
Q ss_pred EeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCC
Q 008010 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (581)
Q Consensus 443 ~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~d 522 (581)
+||||+++.+||. |+|+++..+..++++ |++|+.+++++|++|.. ||+ +.+|||+|+|+ ++++...
T Consensus 143 ~nvDNL~a~~Dp~---~lg~~~~~~~~~~~e-vv~Kt~~dek~G~l~~~---~g~----~~vvEyse~p~-e~~~~~~-- 208 (300)
T cd00897 143 SNIDNLGATVDLR---ILNHMVDNKAEYIME-VTDKTRADVKGGTLIQY---EGK----LRLLEIAQVPK-EHVDEFK-- 208 (300)
T ss_pred EecccccccCCHH---HHHHHHhcCCceEEE-EeecCCCCCcccEEEEE---CCE----EEEEEeccCCH-HHHHhhc--
Confidence 9999965559999 499999999999988 58899999999999974 888 99999999999 4554333
Q ss_pred CCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCcccc
Q 008010 523 NGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYM 569 (581)
Q Consensus 523 g~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~ 569 (581)
+.+. |++ ||||+||+++||+++++. ....||+|+ |+|+|++.
T Consensus 209 ~~~~--~~~~nt~n~~~~l~~L~~~~~~-~~~~lp~h~--~~K~v~p~ 251 (300)
T cd00897 209 SIKK--FKIFNTNNLWVNLKAVKRVVEE-NALDLEIIV--NPKTVDGG 251 (300)
T ss_pred Cccc--ceEEEEeEEEEEHHHHHHHHHh-ccCCCCeee--cccccCCC
Confidence 3433 877 999999999999999874 456799999 99999864
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=7.9e-63 Score=528.37 Aligned_cols=300 Identities=26% Similarity=0.338 Sum_probs=235.9
Q ss_pred hHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccccCchHHHH-HHHHHHhccCceeEEEecCCCcC
Q 008010 223 IIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQ-AALWGIEGLPELGEIYPLGGSAD 300 (581)
Q Consensus 223 l~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~~~~~~-~~~~G~e~L~kia~VlLAGGqGT 300 (581)
+..|+..+.+++.++.. .. ..|+.+ ++++.....+.+..... ....+...+.++|+|+|||||||
T Consensus 2 ~~~f~~l~~~yl~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGT 68 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKS--HQ-----------IDWDKIMPPPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGT 68 (420)
T ss_dssp HHHHHHHHHHHHHCCCC--CS-------------GGGEEE-GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSG
T ss_pred hHHHHHHHHHHHHhccc--CC-----------cccccCCCCChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccC
Confidence 45788899999987321 11 146666 33344444443322211 12456778889999999999999
Q ss_pred CCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCC
Q 008010 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQ 380 (581)
Q Consensus 301 RLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~ 380 (581)
|||+++||| +|||. +++||||++++||++++ +.|| +.||||||||+ +||++|++||++ |||++.
T Consensus 69 rlG~~~pK~--~~~v~----~~~t~ldl~~~qi~~l~----~~~~--~~iPl~iMtS~--~T~~~T~~~l~k--yfg~~~ 132 (420)
T PF01704_consen 69 RLGCSGPKG--LIPVR----EGKTFLDLIVEQIEALN----KKYG--VDIPLYIMTSF--NTHEDTRKFLEK--YFGLDV 132 (420)
T ss_dssp CCTESSBGG--GSEEE----TTEEHHHHHHHHHHHHH----HHHT--TT-EEEEEEET--TTHHHHHHHHHH--GCGSSC
T ss_pred ccCCCCCCc--ceecC----CcccHHHHHHHHHHHHh----cccc--ccceEEEecCc--ccHHHHHHHHHH--hcCCCc
Confidence 999999999 99983 69999999999999997 4666 78999999999 599999999999 999988
Q ss_pred CceEEEecCceeeEecCCCccccccCCC-----ccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc-cch
Q 008010 381 SSFQLFEQPLVPAVDAEDGQWLVMRPFA-----PVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA-TDL 454 (581)
Q Consensus 381 ~qV~~F~Q~~vP~l~~~~Gkill~~~~~-----i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak-~DP 454 (581)
+ |++|+|+++||++.+ |+++++.+.+ ..|+|+||||||.+|+++|+||+|+++|+||+||+|||| |++ +||
T Consensus 133 ~-v~~F~Q~~~P~i~~d-~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp 209 (420)
T PF01704_consen 133 D-VFFFKQSKLPAIDAD-GKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP 209 (420)
T ss_dssp C-EEEEEE-EEEEEETT-TTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H
T ss_pred c-eEEEeecCcceEeCC-CccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH
Confidence 7 999999999999987 8888886652 358999999999999999999999999999999999999 666 999
Q ss_pred hhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcccccCCccc
Q 008010 455 TLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTN 534 (581)
Q Consensus 455 ~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~F~~NiN 534 (581)
. ++|+++.++.+++++ |++|+.+++++|++|.. +|+ +.+|||+|+++....+.++.++..+ | |||
T Consensus 210 ~---~lG~~~~~~~~~~~e-vv~Kt~~dek~Gvl~~~---~G~----~~vvEysqip~~~~~~~~~~~~~~~--F--ntn 274 (420)
T PF01704_consen 210 V---FLGYMIEKNADFGME-VVPKTSPDEKGGVLCRY---DGK----LQVVEYSQIPKEHMAEFKDIKGFLL--F--NTN 274 (420)
T ss_dssp H---HHHHHHHTT-SEEEE-EEE-CSTTTSSEEEEEE---TTE----EEEEEGGGS-HHGHHHHTSTTTSBE--E--EEE
T ss_pred H---HHHHHHhccchhhee-eeecCCCCCceeEEEEe---CCc----cEEEEeccCCHHHHHhhhccccceE--E--Eec
Confidence 9 499999999999988 57789999999999974 888 9999999999942233334444433 5 899
Q ss_pred eeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCC
Q 008010 535 ILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNF 572 (581)
Q Consensus 535 ~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~ 572 (581)
|+||++++|+++++. ....||+|+ |+|||||+|..
T Consensus 275 Ni~~~l~~l~~~~~~-~~~~Lp~h~--a~Kki~~~d~~ 309 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER-DELQLPIHV--AKKKIPYVDNG 309 (420)
T ss_dssp EEEEEHHHHHHHHHT-TTCCS-EEE--EEEESSEECTE
T ss_pred eeeEEHHHHHHHHHh-ccccCccEE--cchhcccccCC
Confidence 999999999999986 567899999 89999999943
No 9
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=2.6e-59 Score=504.63 Aligned_cols=247 Identities=19% Similarity=0.244 Sum_probs=219.0
Q ss_pred HhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCc
Q 008010 283 IEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (581)
Q Consensus 283 ~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (581)
.+.|.++|+|+||||||||||+++||| +||| + +|+||||++++||++++ +.|| +.||||||||+ +|
T Consensus 74 ~~~L~k~avlkLnGGlGTrmG~~~PKs--~i~v---~-~~~sfldl~~~qi~~l~----~~~g--~~vPl~iMtS~--~T 139 (469)
T PLN02474 74 KKLLDKLVVLKLNGGLGTTMGCTGPKS--VIEV---R-NGLTFLDLIVIQIENLN----KKYG--CNVPLLLMNSF--NT 139 (469)
T ss_pred HHHHhcEEEEEecCCcccccCCCCCce--eEEc---C-CCCcHHHHHHHHHHHHH----HHcC--CCceEEEECCC--ch
Confidence 457899999999999999999999999 9996 2 69999999999999997 5677 78999999999 59
Q ss_pred hHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCC---CccccCCCCcHHHHHHHhcCchHHHHHcCceE
Q 008010 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKG 439 (581)
Q Consensus 363 he~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~---~i~~~P~GhGdIy~aL~~sGlLd~l~~~Giky 439 (581)
|++|++||++|+||+ .+|++|+|+++||++.+ |++.++.+. ..+|+|+||||+|.+|+++|+||+|+++|+||
T Consensus 140 ~~~T~~~l~k~~~~~---~~i~~F~Q~~~P~l~~~-~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~ey 215 (469)
T PLN02474 140 HDDTQKIVEKYTNSN---IEIHTFNQSQYPRVVAD-DFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEY 215 (469)
T ss_pred hHHHHHHHHHcCCCc---cceEEEecCceeeEecC-CCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEE
Confidence 999999999999984 58999999999999988 888888665 45599999999999999999999999999999
Q ss_pred EEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCC
Q 008010 440 ATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (581)
Q Consensus 440 i~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~ 519 (581)
+||+||||+++.+||.| +|+++..+..++++ |++|+.+++++|+||. .||+ +.+|||+|+|+ ++++..
T Consensus 216 ifv~nvDNLga~vDp~~---lg~~~~~~~e~~~e-v~~Kt~~d~kgG~l~~---~dgk----~~lvEysqvp~-e~~~~f 283 (469)
T PLN02474 216 VFIANSDNLGAIVDLKI---LNHLIQNKNEYCME-VTPKTLADVKGGTLIS---YEGK----VQLLEIAQVPD-EHVNEF 283 (469)
T ss_pred EEEEecCccccccCHHH---HHHHHhcCCceEEE-EeecCCCCCCccEEEE---ECCE----EEEEEEecCCH-HHHHhh
Confidence 99999999766699995 89999998888888 5789999999999996 4899 99999999999 465443
Q ss_pred CCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCc
Q 008010 520 FSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPI 566 (581)
Q Consensus 520 ~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkI 566 (581)
. |.+. |++ |||||||+++||+++++. ..||+|+|.+.|++
T Consensus 284 ~--~~~k--f~~fNtnn~w~~L~~l~~~~~~---~~l~~~~I~n~k~~ 324 (469)
T PLN02474 284 K--SIEK--FKIFNTNNLWVNLKAIKRLVEA---DALKMEIIPNPKEV 324 (469)
T ss_pred c--cccc--ceeeeeeeEEEEHHHHHHHhhc---CCCCceeecCCCCC
Confidence 2 5544 888 999999999999999863 45888887667776
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-58 Score=491.33 Aligned_cols=277 Identities=22% Similarity=0.302 Sum_probs=231.4
Q ss_pred ccccccCCC-CcccccCchHHHHHHHHHHhc--cCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHH
Q 008010 256 QFLEIHVPS-GLDLSQNTEYAAQAALWGIEG--LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRD 332 (581)
Q Consensus 256 ~~~~~~vP~-g~~ls~~~~~~~~~~~~G~e~--L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~ 332 (581)
.|+.+..|. +..+.+.+. ..+.||.+. +.++|+|+||||||||||+++||| +|+|+ +|+||||+++|+
T Consensus 73 ~~~ki~~~~~d~~~~~~~~---~~~~~~l~~~~~~klAvl~LaGGqGtrlG~~gPKg--l~~V~----~gks~~dl~~~q 143 (472)
T COG4284 73 EWDKIRPPNPDDVVDYEKK---ILEGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKG--LFEVK----DGKSLFDLQAEQ 143 (472)
T ss_pred eecccCCCChhhhccchhh---ccchhhhhhhhcCceEEEEecCCcccccccCCCce--eEEec----CCCcHHHHHHHH
Confidence 466676665 333333221 112356655 789999999999999999999999 99996 699999999999
Q ss_pred HHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCC-ccc
Q 008010 333 LQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFA-PVC 411 (581)
Q Consensus 333 I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~-i~~ 411 (581)
|..++ .+|+ +.||||||||. |++.|..||+.++|||+++++|.||+|+.+||+..++|++++.+.++ ++|
T Consensus 144 Ik~ln----~~~~--~~vP~~iMtS~---nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~ 214 (472)
T COG4284 144 IKYLN----RQYN--VDVPLYIMTSL---NTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAW 214 (472)
T ss_pred HHHHH----HHhC--CCCCEEEEecC---CcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCccccc
Confidence 99998 4566 79999999995 99999999999999999999999999999996666779999876666 999
Q ss_pred cCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEE
Q 008010 412 KPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIE 490 (581)
Q Consensus 412 ~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~ 490 (581)
+|+||||+|.+|+.||++++|.++||||++|+|||| |++ +||.| +|+++..+.++.+++ ++|+.|+++||+||+
T Consensus 215 ~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~---lg~~~~~~~e~~~e~-t~Kt~a~ekvG~Lv~ 289 (472)
T COG4284 215 YPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKF---LGFMAETNYEYLMET-TDKTKADEKVGILVT 289 (472)
T ss_pred CCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHH---HHHHHhcCcceeEEE-eecccccccceEEEE
Confidence 999999999999999999999999999999999999 666 99995 899999999999995 889999999999997
Q ss_pred eecCCCccccceEEEEecccCCCCCCCCCCCCCCcccccCCc-cceeEEeHHHHHHhhcccCCCCcccccccCCCCcccc
Q 008010 491 KKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPAN-TNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYM 569 (581)
Q Consensus 491 k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~F~~N-iN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~ 569 (581)
.||+ ++++||+|+|+ ++++....++.+. .|.+| |-++++++++|.+.. ...||+|. |+||||+.
T Consensus 290 ---~~g~----~rllEysev~~-~~~~~~~s~~~~~-~~n~Nni~l~~~~~~~l~~~~----~l~Lpi~~--a~Kki~~~ 354 (472)
T COG4284 290 ---YDGK----LRLLEYSEVPN-EHREEFTSDGKLK-YFNTNNIWLHLFSVKFLKEAA----YLNLPIHK--AIKKIPQL 354 (472)
T ss_pred ---eCCc----eEEEEEecCCh-hHhhhhcccccee-eeccccceeehhHHHHHHhhh----ccCCcchh--hhcccCcc
Confidence 4888 99999999999 4776666666543 23332 334455555555443 47899999 88999999
Q ss_pred C
Q 008010 570 D 570 (581)
Q Consensus 570 D 570 (581)
|
T Consensus 355 ~ 355 (472)
T COG4284 355 D 355 (472)
T ss_pred c
Confidence 8
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=3e-54 Score=438.15 Aligned_cols=234 Identities=19% Similarity=0.248 Sum_probs=205.2
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+|+|+||||+|||||++.||+ ++||+ +|+ |+||||+++++|++++.++. .| +.|||+||||+ .||+.|++
T Consensus 1 va~viLaGG~GtRLg~~~PK~--~~~i~-~~~-gk~~l~~~~~~i~~~~~~~~--~~--~~Ip~~imts~--~t~~~t~~ 70 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKS--STDVG-LPS-GQCFLQLIGEKILTLQEIDL--YS--CKIPEQLMNSK--YTHEKTQC 70 (266)
T ss_pred CEEEEECCCCccccCCCCCce--eeeec-CCC-CCcHHHHHHHHHHHHHHHhh--cC--CCCCEEEEcCc--hhHHHHHH
Confidence 588999999999999999999 99998 554 99999999999999986653 13 68999999999 59999999
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
||++|+ ++.++|++|+|+++||++.+ |.+.++++++++|+|+||||||.+|..+|++++|+++|++|++|+|+||+
T Consensus 71 ~l~~~~---~~~~~v~~f~Q~~~P~~~~~-~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 71 YFEKIN---QKNSYVITFMQGKLPLKNDD-DARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred HHHHcC---CCCCceEEEEeCCceEEeCC-CCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 999998 56899999999999999988 77788899999999999999999999999999999999999999999999
Q ss_pred ccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCC------CC
Q 008010 449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP------FS 521 (581)
Q Consensus 449 Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~------~~ 521 (581)
|++ +||. ++|+++..+.++++++ ++|+.+++++|+++.. .+|+ +++|||+|++++ +++.. +.
T Consensus 147 la~v~DP~---~lG~~~~~~~~~~~kv-v~K~~~d~k~G~~~~~--~~g~----~~~vEyse~~~~-~~~~~~~~~~~~~ 215 (266)
T cd04180 147 LVKVADPL---FIGIAIQNRKAINQKV-VPKTRNEESGGYRIAN--INGR----VQLLEYDQIKKL-LKQKMVNNQIPKD 215 (266)
T ss_pred CccccCHH---HHHHHHHcCCCEEEEE-EECCCCCCeEEEEEEe--cCCC----EEEEEeccCCHH-HHhccccccCcCC
Confidence 999 5999 5899999998898885 6678899999998864 1388 999999999994 54432 12
Q ss_pred CCCcccccCCccceeEEeHHHHHHhhc
Q 008010 522 SNGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
+|. ++.+++|||||||+|+||+++++
T Consensus 216 ~~~-~~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 216 IDD-APFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred CCc-eeeccceEEEEEEEHHHHHHHHH
Confidence 333 35577799999999999998864
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-50 Score=417.67 Aligned_cols=319 Identities=20% Similarity=0.259 Sum_probs=266.6
Q ss_pred hhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHhchhcc
Q 008010 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (581)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~id~~y~~~ggl~~y~~~a~~ll~~s~~~~ 241 (581)
.+.++||++|.+|+++.+. +++..|-.++ | .|+..+.++|.+...
T Consensus 26 ~~~s~mk~~l~~l~~~~~~--------------------~~k~~~~~e~---~----------~F~~Lf~RyL~~~~~-- 70 (498)
T KOG2638|consen 26 EALSQMKNELDKLLSTSEP--------------------EDKNHFKTEL---S----------GFFNLFSRYLREKAP-- 70 (498)
T ss_pred HHHHHHHHHHHhccccCch--------------------hhhhcchhhH---H----------HHHHHHHHHHhccCC--
Confidence 5789999999999999771 3566666533 3 345567777765421
Q ss_pred ccccccccccccccccccc-cCCCCcccccCchHHHHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCC
Q 008010 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (581)
Q Consensus 242 ~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~~~~~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps 320 (581)
+..|+.+ ++|++..+.|++.... ..+...|.++|+|+|+||+||.|||.+||+ +++|-
T Consensus 71 ------------~~~wdkI~~p~~d~vv~y~~i~~~---~~~~~~L~KLavlKLNGGlGttmGc~gPKS--~ieVR---- 129 (498)
T KOG2638|consen 71 ------------TIDWDKIRPPPEDAVVPYDDIKNV---ELSKSLLNKLAVLKLNGGLGTTMGCKGPKS--VIEVR---- 129 (498)
T ss_pred ------------ccchhhccCCChhhccccccccch---hhHHHhhhheEEEEecCCcCCccccCCCce--eEEEc----
Confidence 1358888 6666777777654333 356778999999999999999999999999 99983
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCc
Q 008010 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (581)
Q Consensus 321 ~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gk 400 (581)
+|.||+++.++||+.|+ ++|+ +++|+++|||+ +|+++|.++++||.++ +.+|..|.|+++|.++.++ .
T Consensus 130 ~g~tFLDL~V~QIe~LN----~~Y~--~dVPlvLMNSf--nTdedT~kil~ky~~~---kv~i~TF~QS~~PRi~~et-l 197 (498)
T KOG2638|consen 130 DGLTFLDLTVRQIENLN----KTYN--VDVPLVLMNSF--NTDEDTQKILKKYAGS---KVDIKTFNQSKYPRIDKET-L 197 (498)
T ss_pred CCCchhHHHHHHHHHHH----hhcC--CCCCEEEeccc--ccchHHHHHHHHhcCC---ceeEEEeccccCCcccccc-c
Confidence 89999999999999998 6787 79999999999 7999999999999876 5689999999999999884 3
Q ss_pred cccc----cCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEE-E
Q 008010 401 WLVM----RPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS-C 475 (581)
Q Consensus 401 ill~----~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~-v 475 (581)
+.++ +...-+|+|+||||+|.+|+.||+||+|+++|+||+||+++||++|.+|..| +.+..+..++|.| |
T Consensus 198 LPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~I-----Ln~~i~~~~ey~MEv 272 (498)
T KOG2638|consen 198 LPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNI-----LNHVINNNIEYLMEV 272 (498)
T ss_pred cCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHH-----HHHHhcCCCceEEEe
Confidence 4443 3456899999999999999999999999999999999999999999999997 3334444677777 8
Q ss_pred eccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCC
Q 008010 476 KRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERS 554 (581)
Q Consensus 476 ~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~ 554 (581)
+.|+.||.++|+|+. ++|+ +..+||+|+|++ +. ++++..+.|.. ||||+|++|+++++++++ ....
T Consensus 273 TdKT~aDvKgGtLi~---y~G~----lrlLEiaQVP~e-hv----~eFkS~kkFkifNTNNlWinLkavKrlve~-~~l~ 339 (498)
T KOG2638|consen 273 TDKTRADVKGGTLIQ---YEGK----LRLLEIAQVPKE-HV----DEFKSIKKFKIFNTNNLWINLKAVKKLVEE-NALN 339 (498)
T ss_pred cccchhhcccceEEe---ecCE----EEEEEeccCChh-Hh----hhhccceeEEEeccCCeEEehHHHHHHhhc-Cccc
Confidence 999999999999987 6899 999999999994 54 34555677888 999999999999999987 6788
Q ss_pred cccccccCCCCccc
Q 008010 555 LPGMVLNTKKPIVY 568 (581)
Q Consensus 555 LP~Hv~na~KkIpy 568 (581)
|+.|+ ++|+|.+
T Consensus 340 meIi~--N~kti~~ 351 (498)
T KOG2638|consen 340 MEIIV--NPKTIDR 351 (498)
T ss_pred ceeec--ChhhccC
Confidence 99999 8999985
No 13
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.67 E-value=0.0026 Score=67.59 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=57.5
Q ss_pred CceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCc
Q 008010 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (581)
+++-.|+||||.||||.- +.||. ++|++ |+ ++++..++++... |- --++|.|.. .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~--llpv~-----gk~pli~~~l~~l~~~--------Gi---~~i~iv~~~---~ 60 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKP--AVPFG-----GKYRIIDFTLSNCANS--------GI---DTVGVLTQY---Q 60 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccc--eeeeC-----CceeehhHHHHHHHhC--------CC---CEEEEEecC---C
Confidence 456779999999999987 78999 98884 88 7999999988652 41 246788876 6
Q ss_pred hHHHHHHHHHcCCCCCC
Q 008010 363 HERITSLCERLRWFGRG 379 (581)
Q Consensus 363 he~T~~flekn~yFGl~ 379 (581)
.+..+++|++...||+.
T Consensus 61 ~~~i~~~~~~~~~~~~~ 77 (380)
T PRK05293 61 PLELNNHIGIGSPWDLD 77 (380)
T ss_pred HHHHHHHHhCCCccccc
Confidence 88999999877667764
No 14
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.49 E-value=0.0057 Score=59.57 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=68.3
Q ss_pred EEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHH
Q 008010 292 IYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCE 371 (581)
Q Consensus 292 VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fle 371 (581)
|+||||.||||+...||. ++|++ |+++++..++++... | .-.++|.|+. .++...+++.
T Consensus 2 iIlaaG~g~R~~~~~pK~--l~~v~-----gkpli~~~i~~l~~~--------~---i~~i~iv~~~---~~~~i~~~~~ 60 (229)
T cd02540 2 VILAAGKGTRMKSDLPKV--LHPLA-----GKPMLEHVLDAARAL--------G---PDRIVVVVGH---GAEQVKKALA 60 (229)
T ss_pred EEEeCCCCccCCCCCChh--cceeC-----CccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHhC
Confidence 789999999999878999 88874 899999988877652 2 2356777776 4777777776
Q ss_pred HcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCccc
Q 008010 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVVA 450 (581)
Q Consensus 372 kn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~La 450 (581)
+ + .+.++.|. .+.|.++ ++.++. .+ +++.+++.+.+.|+++.
T Consensus 61 ~---~-----~~~~~~~~----------------------~~~g~~~ai~~a~~------~~-~~~~~~vli~~~D~p~~ 103 (229)
T cd02540 61 N---P-----NVEFVLQE----------------------EQLGTGHAVKQALP------AL-KDFEGDVLVLYGDVPLI 103 (229)
T ss_pred C---C-----CcEEEECC----------------------CCCCCHHHHHHHHH------hh-ccCCCeEEEEeCCcccc
Confidence 4 2 23333331 1234444 344432 22 22467899999999865
Q ss_pred c
Q 008010 451 A 451 (581)
Q Consensus 451 k 451 (581)
.
T Consensus 104 ~ 104 (229)
T cd02540 104 T 104 (229)
T ss_pred C
Confidence 4
No 15
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.43 E-value=0.0096 Score=64.39 Aligned_cols=206 Identities=14% Similarity=0.122 Sum_probs=110.1
Q ss_pred ccCceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCC
Q 008010 285 GLPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360 (581)
Q Consensus 285 ~L~kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~ 360 (581)
+++++..|+||||.||||. .+-||. ++|++ |+ ++++..++.+... | .--++|.|..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~--llPv~-----gk~plI~~~L~~l~~~--------G---i~~i~iv~~~-- 61 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKP--AVPFG-----GSYRLIDFVLSNLVNS--------G---YLRIYVLTQY-- 61 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCccc--ceeeC-----CcceEhHHHHHHHHHC--------C---CCEEEEEecc--
Confidence 3567888999999999999 899999 99984 87 8999998877652 4 2245788876
Q ss_pred CchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 008010 361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (581)
Q Consensus 361 ~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi 440 (581)
..+...++|.+. +++....+.++.. +|.-. . .-...|-|.||-.... .+.+....-+++
T Consensus 62 -~~~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~-~----------~~~~~~lGta~al~~a-----~~~i~~~~~~~~ 120 (407)
T PRK00844 62 -KSHSLDRHISQT--WRLSGLLGNYITP--VPAQQ-R----------LGKRWYLGSADAIYQS-----LNLIEDEDPDYV 120 (407)
T ss_pred -CHHHHHHHHHhC--cCccccCCCeEEE--CCccc-C----------CCCCcccCCHHHHHHH-----HHHHHhcCCCEE
Confidence 789999999742 3322112222110 00000 0 0012255776643322 223333344788
Q ss_pred EEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccC-CCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCC
Q 008010 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP 519 (581)
Q Consensus 441 ~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~-~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~ 519 (581)
.|.+-|++. ..|.. .++-.+...+..+.+.. .+.+ .....-|++.. +.+|+ + .++.|=|.. .....
T Consensus 121 lv~~gD~v~-~~dl~--~l~~~h~~~~~~~ti~~-~~~~~~~~~~~Gvv~~--d~~g~----v--~~~~eKp~~-~~~~~ 187 (407)
T PRK00844 121 VVFGADHVY-RMDPR--QMVDFHIESGAGVTVAA-IRVPREEASAFGVIEV--DPDGR----I--RGFLEKPAD-PPGLP 187 (407)
T ss_pred EEecCCEEE-cCCHH--HHHHHHHhcCCcEEEEE-EecchHHcccCCEEEE--CCCCC----E--EEEEECCCC-ccccc
Confidence 899999853 33332 34444444444443332 2211 11223455432 23444 3 333333321 00000
Q ss_pred CCCCCcccccCCccceeEEeHHHHHHhhc
Q 008010 520 FSSNGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 520 ~~dg~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
...+. .-.|+.+++|+-+.|.+.+.
T Consensus 188 ~~~~~----~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 188 DDPDE----ALASMGNYVFTTDALVDALR 212 (407)
T ss_pred CCCCC----cEEEeEEEEEeHHHHHHHHH
Confidence 00011 22488899999998766543
No 16
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.42 E-value=0.00096 Score=65.48 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=79.6
Q ss_pred EEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+ ...||. ++||+ |+++++..++.+.+. | .--++|.|.. ..+.++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~--llpi~-----g~piI~~~l~~l~~~--------G---i~~I~iv~~~---~~~~i~ 61 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRC--LLPLA-----NVPLIDYTLEFLALN--------G---VEEVFVFCCS---HSDQIK 61 (217)
T ss_pred EEEEcCCCcccccccccCCCce--eeEEC-----CEehHHHHHHHHHHC--------C---CCeEEEEeCC---CHHHHH
Confidence 4899999999998 588999 98884 899999999877662 4 2246788876 678899
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
++|++..++++... ...+..+. + ..+.|-|+..+.+...+.+ -+.+.+.+.|+
T Consensus 62 ~~l~~~~~~~~~~~------~~~i~~~~-~-------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 62 EYIEKSKWSKPKSS------LMIVIIIM-S-------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHHhhccccccccC------cceEEEEe-C-------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 99999776665321 00111111 1 1244567776665544433 24566788887
Q ss_pred cccccchhhHHHhhhhhh
Q 008010 448 VVAATDLTLLALAGIGLH 465 (581)
Q Consensus 448 ~Lak~DP~~~~~lG~~~~ 465 (581)
+. ..|.. .++-.+..
T Consensus 115 i~-~~dl~--~~l~~h~~ 129 (217)
T cd04197 115 VS-NIDLK--EILEEHKE 129 (217)
T ss_pred ee-ccCHH--HHHHHHHH
Confidence 65 34433 34555544
No 17
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.42 E-value=0.0034 Score=68.23 Aligned_cols=107 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. + .-.++|.|+. ..+...
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKV--LQTL-----LGEPMLRFVYRALRPL--------F---GDNVWTVVGH---RADMVR 63 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCce--eccc-----CCCcHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 4677999999999999889999 8887 4999999999977542 2 1246667776 455555
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (581)
+++.. .++.+..|+ .|.|-|+ ++.++ +.|.+.+.+++.+...|
T Consensus 64 ~~~~~--------~~~~~v~~~----------------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 64 AAFPD--------EDARFVLQE----------------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGD 107 (456)
T ss_pred Hhccc--------cCceEEEcC----------------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCC
Confidence 55432 122222221 1334443 44433 34544467899999999
Q ss_pred Ccccc
Q 008010 447 NVVAA 451 (581)
Q Consensus 447 N~Lak 451 (581)
.++..
T Consensus 108 ~P~i~ 112 (456)
T PRK14356 108 TPLVT 112 (456)
T ss_pred cccCC
Confidence 98765
No 18
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.41 E-value=0.012 Score=56.53 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=46.5
Q ss_pred EEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.|+||+- ..||. ++|++ |+++++..++.+... | + -.++|.|+. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~i~-----g~pli~~~l~~l~~~--------g--~-~~v~vv~~~---~~~~i~~ 60 (223)
T cd06915 2 VILAGGLGTRLRSVVKDLPKP--LAPVA-----GRPFLEYLLEYLARQ--------G--I-SRIVLSVGY---LAEQIEE 60 (223)
T ss_pred EEecCCcccccCcccCCCCcc--ccEEC-----CcchHHHHHHHHHHC--------C--C-CEEEEEccc---CHHHHHH
Confidence 7899999999975 58999 88874 899999999887652 3 1 146677765 5678888
Q ss_pred HHHHc
Q 008010 369 LCERL 373 (581)
Q Consensus 369 flekn 373 (581)
++...
T Consensus 61 ~~~~~ 65 (223)
T cd06915 61 YFGDG 65 (223)
T ss_pred HHcCc
Confidence 88754
No 19
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.34 E-value=0.024 Score=56.19 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=98.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
+++.|+||||.|+||+ +|. ++|+ .|+++++..++++... | .-.++|-| . ++.+.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~--Ll~i-----~Gkpll~~~l~~l~~~--------~---i~~ivvv~-~----~~~i~ 55 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKP--LADI-----GGKPMIVRVYERASKA--------G---ADRVVVAT-D----DERIA 55 (245)
T ss_pred ceEEEEecCCCCCCCC---CCc--cccc-----CCcCHHHHHHHHHHhc--------C---CCeEEEEC-C----cHHHH
Confidence 4678999999999996 688 8887 4999999999987663 2 11233433 2 36677
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++.+ +|. .+.+.. + ..+.|.+++..++..-+ ..+-+++.+.+.|+
T Consensus 56 ~~~~~---~~~---~v~~~~---------~-------------~~~~gt~~~~~~~~~~~------~~~~~~vlv~~~D~ 101 (245)
T PRK05450 56 DAVEA---FGG---EVVMTS---------P-------------DHPSGTDRIAEAAAKLG------LADDDIVVNVQGDE 101 (245)
T ss_pred HHHHH---cCC---EEEECC---------C-------------cCCCchHHHHHHHHhcC------CCCCCEEEEecCCC
Confidence 77754 232 111100 1 11445555554443211 12347889999999
Q ss_pred cccccchhhHHHhhhhhhcCCceeEEEEeccC----CCcc-cceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCC
Q 008010 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSS----GATE-GINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (581)
Q Consensus 448 ~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~----~ade-gvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~d 522 (581)
++...+- +-.++-.....+..+.+.+ .+.. ..+. .++|.++ .+|+ +++..+-+..+..+.. ++
T Consensus 102 Pli~~~~-l~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~d---~~g~------v~~~~e~~~~~~~~~~-~~ 169 (245)
T PRK05450 102 PLIPPEI-IDQVAEPLANPEADMATLA-VPIHDAEEAFNPNVVKVVLD---ADGR------ALYFSRAPIPYGRDAF-AD 169 (245)
T ss_pred CCCCHHH-HHHHHHHHhcCCCCeEeee-eecCCHHHhcCcCCCEEEeC---CCCc------EEEecCCCCCCCCCcc-cc
Confidence 9875221 1123332222233444333 2221 1222 3555433 3454 2455554421111111 11
Q ss_pred CCcccccCCccceeEEeHHHHHHhhc
Q 008010 523 NGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 523 g~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
..-. ..-.|+.+..|+-+.++.+.+
T Consensus 170 ~~~~-~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 170 SAPT-PVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ccCc-cccEEEEEEecCHHHHHHHHh
Confidence 1000 022488899999988887764
No 20
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.33 E-value=0.007 Score=58.09 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=98.3
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.||||+ ...||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+.+.+
T Consensus 2 iIlaaG~g~R~~~~t~~~pK~--ll~v-----~g~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~i~~ 60 (217)
T cd04181 2 VILAAGKGTRLRPLTDTRPKP--LLPI-----AGKPILEYIIERLARA--------G---IDEIILVVGY---LGEQIEE 60 (217)
T ss_pred EEecCCccccccccccCCCcc--ccEE-----CCeeHHHHHHHHHHHC--------C---CCEEEEEecc---CHHHHHH
Confidence 789999999997 368998 8887 4899999999987652 2 2345777776 4677888
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++.+...+|. .|.+..|. .|.|.|+-...... .+ .-+++.|...|++
T Consensus 61 ~~~~~~~~~~---~i~~~~~~----------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~ 107 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE----------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVL 107 (217)
T ss_pred HHcChhhcCc---eEEEEeCC----------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCee
Confidence 8876543443 23222211 23565444333221 12 4578889999986
Q ss_pred ccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcccc
Q 008010 449 VAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (581)
Q Consensus 449 Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~ 528 (581)
. ..| +-.++-.+...+....+.+ . +......-+++.. +.+|+ ++++.|=+.. ...
T Consensus 108 ~-~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~--d~~~~------v~~~~ek~~~-------~~~----- 162 (217)
T cd04181 108 T-DLD--LSELLRFHREKGADATIAV-K-EVEDPSRYGVVEL--DDDGR------VTRFVEKPTL-------PES----- 162 (217)
T ss_pred c-CcC--HHHHHHHHHhcCCCEEEEE-E-EcCCCCcceEEEE--cCCCc------EEEEEECCCC-------CCC-----
Confidence 4 332 2233433334444444433 2 2223334455332 12343 3344443321 011
Q ss_pred cCCccceeEEeHHHHHH
Q 008010 529 FPANTNILYVDLASAEL 545 (581)
Q Consensus 529 F~~NiN~l~fsL~~L~~ 545 (581)
...|+++++|+-+.++.
T Consensus 163 ~~~~~Giy~~~~~~~~~ 179 (217)
T cd04181 163 NLANAGIYIFEPEILDY 179 (217)
T ss_pred CEEEEEEEEECHHHHHh
Confidence 22477888999887743
No 21
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.31 E-value=0.0043 Score=63.81 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=48.7
Q ss_pred EEEecCCCcCCCC----CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 291 ~VlLAGGqGTRLG----~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
.|+||||.||||. ...||- ++|++ .++|++|..++++..+. + .-.++|.|+. +.++.+
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--ll~l~----g~~~li~~~l~~l~~~~-------~---~~~i~vvt~~--~~~~~v 64 (274)
T cd02509 3 PVILAGGSGTRLWPLSRESYPKQ--FLKLF----GDKSLLQQTLDRLKGLV-------P---PDRILVVTNE--EYRFLV 64 (274)
T ss_pred EEEEcccccccCCcCCCCCCCce--EeEcC----CCCcHHHHHHHHHhcCC-------C---CCcEEEEech--HHHHHH
Confidence 5899999999996 578998 98874 23999999999876631 1 2378889987 345667
Q ss_pred HHHHHH
Q 008010 367 TSLCER 372 (581)
Q Consensus 367 ~~flek 372 (581)
++++++
T Consensus 65 ~~~l~~ 70 (274)
T cd02509 65 REQLPE 70 (274)
T ss_pred HHHHhh
Confidence 778865
No 22
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.30 E-value=0.01 Score=65.36 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=50.6
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.++.|+||||.||||+...||. ++|+ .|+++++..++++.+. | .-.++|.++. ..+.+.
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~ 62 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKV--LHTL-----AGRSMLGHVLHAAAGL--------A---PQHLVVVVGH---DRERVA 62 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCce--ecee-----CCccHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 4667999999999999888999 8887 4999999999988663 3 2467788876 456777
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++++.
T Consensus 63 ~~~~~ 67 (482)
T PRK14352 63 PAVAE 67 (482)
T ss_pred HHhhc
Confidence 77764
No 23
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=97.28 E-value=0.024 Score=55.96 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=65.8
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+..|+||||.|+||| ||. ++|+ .|+++++..++++.+.. | +.-+|..+. ++.+.+
T Consensus 2 ~~~iIlA~g~s~R~~---~K~--l~~i-----~gkpll~~~l~~l~~~~-------~----i~~ivvv~~----~~~i~~ 56 (239)
T cd02517 2 VIVVIPARYASSRLP---GKP--LADI-----AGKPMIQHVYERAKKAK-------G----LDEVVVATD----DERIAD 56 (239)
T ss_pred EEEEEecCCCCCCCC---CCC--Cccc-----CCcCHHHHHHHHHHhCC-------C----CCEEEEECC----cHHHHH
Confidence 567999999999996 788 8887 49999999999887631 2 222333332 467888
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++.+ +|. .+..+ .+ ..+.|.|++..++.. + ..+.+++.+.+.|++
T Consensus 57 ~~~~---~~~-----~~~~~-------~~-------------~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~P 101 (239)
T cd02517 57 AVES---FGG-----KVVMT-------SP-------------DHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEP 101 (239)
T ss_pred HHHH---cCC-----EEEEc-------Cc-------------ccCchhHHHHHHHHh------c-CCCCCEEEEecCCCC
Confidence 8764 221 11111 00 114566776666532 1 122478999999998
Q ss_pred ccc
Q 008010 449 VAA 451 (581)
Q Consensus 449 Lak 451 (581)
+..
T Consensus 102 li~ 104 (239)
T cd02517 102 LIP 104 (239)
T ss_pred CCC
Confidence 876
No 24
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.27 E-value=0.013 Score=61.10 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=73.5
Q ss_pred ceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
.+-.|+||||.||||.- ..||- ++||+ +|++++..++.+... | + --++|++... -.+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~--Llpv~-----gkPmI~~~l~~l~~a--------G--i-~~I~ii~~~~--~~~ 62 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQ--LLPIY-----DKPMIYYPLSTLMLA--------G--I-RDILIISTPQ--DTP 62 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCce--EeEEC-----CEEHHHHHHHHHHHC--------C--C-CEEEEEecCC--chH
Confidence 35569999999999975 78998 98884 899999998877652 4 1 2355555552 456
Q ss_pred HHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 008010 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (581)
Q Consensus 365 ~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (581)
..+++|.+...||+ ++.+..|. .|.|-|+-+.... ++.. +-+ +.+..
T Consensus 63 ~~~~~l~~g~~~g~---~i~y~~q~----------------------~~~Gta~Al~~a~------~~i~-~~~-~~lv~ 109 (292)
T PRK15480 63 RFQQLLGDGSQWGL---NLQYKVQP----------------------SPDGLAQAFIIGE------EFIG-GDD-CALVL 109 (292)
T ss_pred HHHHHHcCccccCc---eeEEEECC----------------------CCCCHHHHHHHHH------HHhC-CCC-EEEEE
Confidence 67888877666776 34443332 2667777654332 2222 223 45566
Q ss_pred CCCcccccc
Q 008010 445 VSNVVAATD 453 (581)
Q Consensus 445 vDN~Lak~D 453 (581)
-||++...|
T Consensus 110 gD~i~~~~~ 118 (292)
T PRK15480 110 GDNIFYGHD 118 (292)
T ss_pred CCeeeeccC
Confidence 888875443
No 25
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.24 E-value=0.016 Score=63.23 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=53.0
Q ss_pred ceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 288 kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
++..|+||||.||||. ...||- ++|++ |+ ++++..++++... | .-.++|.|+. ..
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~--Llpi~-----gk~plI~~~L~~l~~~--------G---i~~vivv~~~---~~ 61 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKP--AVPLA-----GKYRLIDIPISNCINS--------G---INKIYVLTQF---NS 61 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcce--eeEEC-----CeeEEeHHHHHHHHHC--------C---CCEEEEEecC---CH
Confidence 5677999999999997 489999 98884 88 9999999977652 4 2357888887 68
Q ss_pred HHHHHHHHHcC
Q 008010 364 ERITSLCERLR 374 (581)
Q Consensus 364 e~T~~flekn~ 374 (581)
+..+++|++..
T Consensus 62 ~~i~~~l~~~~ 72 (429)
T PRK02862 62 ASLNRHISQTY 72 (429)
T ss_pred HHHHHHHhcCc
Confidence 89999998643
No 26
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.20 E-value=0.0027 Score=62.58 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=106.1
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
|+||||.||||. ...||. ++|++ |+ ++++..++++... | +.-.++|.+.. ..+...
T Consensus 3 vIla~G~GtRl~plt~~~pK~--ll~i~-----g~~pli~~~l~~l~~~--------g--~~~ii~V~~~~---~~~~i~ 62 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKP--LLPIG-----GKYPLIDYVLENLANA--------G--IKEIIVVVNGY---KEEQIE 62 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGG--GSEET-----TEEEHHHHHHHHHHHT--------T--CSEEEEEEETT---THHHHH
T ss_pred EEECCCCCccCchhhhccccc--cceec-----CCCcchhhhhhhhccc--------C--CceEEEEEeec---cccccc
Confidence 788999999997 678998 98884 77 9999999988763 3 23335666655 678889
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcC-ceEEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG-RKGATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~G-ikyi~v~~vD 446 (581)
+++++...+++ +|.+..|+ .|.|.|+-...+. +.+.... -+++.|.+.|
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~----------------------~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQP----------------------EPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGD 112 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEES----------------------SSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTE
T ss_pred ccccccccccc---cceeeecc----------------------cccchhHHHHHHH-----HHhhhccccceEEEEecc
Confidence 99998765652 33333222 1125555433322 2222222 3579999999
Q ss_pred CcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcc
Q 008010 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (581)
Q Consensus 447 N~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~ 526 (581)
++.-. | +-.++-.+...+......+.........+-|++... .+|+ +++.-|=|.. ... ..+
T Consensus 113 ~i~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d--~~~~------V~~~~EKP~~--~~~----~~~- 174 (248)
T PF00483_consen 113 IIFDD-D--LQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVD--EDGR------VIRIVEKPDN--PNA----SNL- 174 (248)
T ss_dssp EEEST-T--HHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEE--TTSE------EEEEEESCSS--HSH----SSE-
T ss_pred ccccc-h--hhhHHHhhhccccccccccccccccccccceeeeec--ccee------EEEEeccCcc--ccc----cee-
Confidence 86654 2 224555666666644333322233334445554332 3444 3333332321 000 112
Q ss_pred cccCCccceeEEeHHHHHHhh
Q 008010 527 ADFPANTNILYVDLASAELVG 547 (581)
Q Consensus 527 S~F~~NiN~l~fsL~~L~~v~ 547 (581)
+|+.+++|+-+.+..++
T Consensus 175 ----~~~G~Y~~~~~~~~~~~ 191 (248)
T PF00483_consen 175 ----INTGIYIFKPEIFDFLL 191 (248)
T ss_dssp ----EEEEEEEEETHHHHHHH
T ss_pred ----ccCceEEEcchHHHHHh
Confidence 37788899999888774
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.17 E-value=0.015 Score=63.01 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=47.6
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
++.|+||||.|||||...||. ++|+ .|+++++..++++.+. | ...++|.+.. ..+...+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---~~~iivvv~~---~~~~i~~ 60 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKV--LHPL-----GGKSLVERVLDSCEEL--------K---PDRRLVIVGH---QAEEVEQ 60 (450)
T ss_pred ceEEEEeCCCCccCCCCCChh--cCEE-----CChhHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHH
Confidence 467899999999999888998 8887 4899999999987653 2 2355666665 3456666
Q ss_pred HHHH
Q 008010 369 LCER 372 (581)
Q Consensus 369 flek 372 (581)
++++
T Consensus 61 ~~~~ 64 (450)
T PRK14360 61 SLAH 64 (450)
T ss_pred Hhcc
Confidence 6654
No 28
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.17 E-value=0.0092 Score=63.25 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=55.6
Q ss_pred ceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
++..|+||||.||||.- +-||. ++||+ || ++++.+++.+.+. | .--++|.|.. -.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKp--LlpV~-----gk~PlIe~~l~~L~~~--------G---i~~I~iv~~~---~~ 60 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLA--SLPFG-----GRYRLIDFPLSNMVNA--------G---IRNVFIFFKN---KE 60 (369)
T ss_pred cEEEEEECCCCCccccccccCCccc--ccccC-----CeeeEEEEEhhhhhcc--------C---CCEEEEEeCC---Cc
Confidence 45669999999999964 88998 88884 88 8999999988763 4 2256777776 34
Q ss_pred H-HHHHHHHHcCCCCCC
Q 008010 364 E-RITSLCERLRWFGRG 379 (581)
Q Consensus 364 e-~T~~flekn~yFGl~ 379 (581)
+ ..+++|.+...||++
T Consensus 61 ~~~I~~~l~~~~~~~~~ 77 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLH 77 (369)
T ss_pred HHHHHHHHhCCCCCCcc
Confidence 4 899999887777775
No 29
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.15 E-value=0.019 Score=61.75 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=71.7
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+..|+||||.||||+...||. ++|++ |+++++..++.++.. . -.++|+++. ..+...+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~--Llpi~-----gkPli~~~i~~l~~~--------~----~~i~Ivv~~---~~~~i~~ 60 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKV--LHTIC-----GKPMLFYILKEAFAI--------S----DDVHVVLHH---QKERIKE 60 (430)
T ss_pred ccEEEEcCCCCccCCCCCCce--eCEEC-----CccHHHHHHHHHHHc--------C----CcEEEEECC---CHHHHHH
Confidence 456999999999999989999 98873 999999999988652 1 236777776 5788888
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++.+. ++ .+.+..|.. ..+.|.|+....+. ..-+++.+.+.|++
T Consensus 61 ~~~~~--~~----~v~~~~~~~--------------------~~~~gt~~al~~~~----------~~~d~vlv~~gD~p 104 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQDL--------------------ENYPGTGGALMGIE----------PKHERVLILNGDMP 104 (430)
T ss_pred HHHhc--CC----ceEEEEecC--------------------ccCCCcHHHHhhcc----------cCCCeEEEEECCcc
Confidence 88753 21 344443320 12345555443311 12478999999998
Q ss_pred ccc
Q 008010 449 VAA 451 (581)
Q Consensus 449 Lak 451 (581)
+..
T Consensus 105 ~~~ 107 (430)
T PRK14359 105 LVE 107 (430)
T ss_pred CCC
Confidence 753
No 30
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.14 E-value=0.0062 Score=58.96 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=75.5
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
|+||||.||||. ...||. ++|++ |+ ++++..++.+... | .-.++|.|+. ..+...
T Consensus 2 vILAaG~gtRl~plt~~~pK~--llpv~-----g~~pli~~~l~~l~~~--------g---i~~iivv~~~---~~~~i~ 60 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKP--AVPFG-----GRYRLIDFPLSNMVNS--------G---IRNVGVLTQY---KSRSLN 60 (200)
T ss_pred EEeCCCCCcccchhhcCCcce--eeEEC-----CeeeeHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHH
Confidence 789999999996 478999 98884 87 9999999877662 3 2467889987 578899
Q ss_pred HHHHHcCCCCCCCC--ceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 008010 368 SLCERLRWFGRGQS--SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (581)
Q Consensus 368 ~flekn~yFGl~~~--qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (581)
++|.+...||++.. .+.+.. .........|-|.|+-...... .+...+-+.+.|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~g 119 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILP----------------PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSG 119 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeC----------------cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecC
Confidence 99987666776421 121110 0000012356677775443322 233333477889999
Q ss_pred CCc
Q 008010 446 SNV 448 (581)
Q Consensus 446 DN~ 448 (581)
|++
T Consensus 120 D~v 122 (200)
T cd02508 120 DHI 122 (200)
T ss_pred CEE
Confidence 984
No 31
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.03 E-value=0.028 Score=61.45 Aligned_cols=216 Identities=14% Similarity=0.139 Sum_probs=114.4
Q ss_pred CceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCc
Q 008010 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (581)
+++..|+||||.||||. ...||. ++|++ |+ .++++.++.+... |- =-++|.|.. .
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~--llpv~-----g~~plId~~L~~l~~~--------Gi---~~i~iv~~~---~ 60 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKP--AVPIG-----GNYRLIDIPMSNCINS--------GI---NKIYVLTQF---N 60 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCccc--ceEeC-----CcceEehHHHHHHHhC--------CC---CEEEEEecc---C
Confidence 46778999999999997 588999 98884 65 9999998877652 41 235777776 6
Q ss_pred hHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEE
Q 008010 363 HERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATV 442 (581)
Q Consensus 363 he~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v 442 (581)
.+...++|++..+|+.... |.++.+..+... . ...-...|.|.||-.+.... .+++...++-+++.|
T Consensus 61 ~~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~~------q-~~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv 127 (436)
T PLN02241 61 SASLNRHLSRAYNFGNGGN----FGDGFVEVLAAT------Q-TPGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLI 127 (436)
T ss_pred HHHHHHHHhccCCCCCCcc----cCCCCEEEcCCc------c-cCCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEE
Confidence 8889999985433543211 111111111100 0 00011257888876544322 233322223588999
Q ss_pred EeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCC-CcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCC
Q 008010 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSG-ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (581)
Q Consensus 443 ~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~-adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~ 521 (581)
.+-|++ ...|. -.++-.+...+..+-+. +.+... ....-|++.. ..+| .++++.|-|.........-
T Consensus 128 ~~gD~v-~~~dl--~~ll~~h~~~~a~~ti~-~~~v~~~~~~~ygvv~~--d~~~------~v~~~~Ekp~~~~~~~~~~ 195 (436)
T PLN02241 128 LSGDHL-YRMDY--MDFVQKHRESGADITIA-CLPVDESRASDFGLMKI--DDTG------RIIEFSEKPKGDELKAMQV 195 (436)
T ss_pred ecCCeE-EccCH--HHHHHHHHHcCCCEEEE-EEecchhhcCcceEEEE--CCCC------CEEEEEECCCCcccccccc
Confidence 999985 43443 23454544444443322 222211 1234455432 1233 3456666554210000000
Q ss_pred CCCcc--------c-ccCCccceeEEeHHHHHHhhc
Q 008010 522 SNGLQ--------A-DFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~l~--------S-~F~~NiN~l~fsL~~L~~v~~ 548 (581)
+.+.+ . ..-.|+.+++|+-+.|..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 196 DTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred cccccccccccccccceEEEeEEEEEEHHHHHHHHH
Confidence 00000 0 022388889999888876644
No 32
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.98 E-value=0.028 Score=62.35 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=49.2
Q ss_pred CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
..+..|+||||.||||+...||. ++|++ |+++++..++++.+. | .-.++|.|.. ..+..
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~--llpi~-----gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 64 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKV--LHPVA-----GRPMVAWAVKAARDL--------G---ARKIVVVTGH---GAEQV 64 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCce--ecEEC-----CeeHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHH
Confidence 46778999999999999888999 88873 899999998877652 3 2346677775 46677
Q ss_pred HHHHH
Q 008010 367 TSLCE 371 (581)
Q Consensus 367 ~~fle 371 (581)
+++|+
T Consensus 65 ~~~~~ 69 (481)
T PRK14358 65 EAALQ 69 (481)
T ss_pred HHHhc
Confidence 77764
No 33
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=96.98 E-value=0.028 Score=58.49 Aligned_cols=110 Identities=21% Similarity=0.297 Sum_probs=71.7
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||.- ..||- ++||+ +|++++..++.+... | .-.++|.|... ..+..+
T Consensus 2 aIILAgG~GtRL~plT~~~pK~--Llpv~-----gkPmI~~~L~~l~~a--------G---i~~I~iv~~~~--~~~~~~ 61 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQ--LLPIY-----DKPMIYYPLSTLMLA--------G---IRDILIISTPQ--DTPRFQ 61 (286)
T ss_pred EEEECCCCCccCCcccCCCCce--eeEEC-----CEEhHHHHHHHHHHC--------C---CCEEEEEecCC--cHHHHH
Confidence 38899999999975 78998 98884 899999998877652 3 22455666652 567778
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
++|.....||+ +|.+..|. .|-|-|+-+..... +.. -+-..+...||
T Consensus 62 ~~lg~g~~~g~---~i~~~~q~----------------------~~~Gta~al~~a~~------~l~--~~~~~li~gD~ 108 (286)
T TIGR01207 62 QLLGDGSQWGV---NLSYAVQP----------------------SPDGLAQAFIIGED------FIG--GDPSALVLGDN 108 (286)
T ss_pred HHhccccccCc---eEEEEEcc----------------------CCCCHHHHHHHHHH------HhC--CCCEEEEECCE
Confidence 88877666776 44444442 35566664443322 221 13345557899
Q ss_pred cccccc
Q 008010 448 VVAATD 453 (581)
Q Consensus 448 ~Lak~D 453 (581)
++...|
T Consensus 109 i~~~~~ 114 (286)
T TIGR01207 109 IFYGHD 114 (286)
T ss_pred eccccC
Confidence 875443
No 34
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.94 E-value=0.023 Score=62.13 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=50.1
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+...||. ++|++ |+++++..++++.+. | .-.++|.|+. ..+...
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~--l~pi~-----g~pli~~~l~~l~~~--------g---i~~iiiv~~~---~~~~i~ 61 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKV--MHPLA-----GRPMVSWPVAAAREA--------G---AGRIVLVVGH---QAEKVR 61 (459)
T ss_pred cceEEEEcCCCCcccCCCCCce--eceeC-----CccHHHHHHHHHHhc--------C---CCeEEEEECC---CHHHHH
Confidence 5677999999999999889999 98874 899999988877652 3 2367888887 567777
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++|.+
T Consensus 62 ~~~~~ 66 (459)
T PRK14355 62 EHFAG 66 (459)
T ss_pred HHhcc
Confidence 77754
No 35
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=96.94 E-value=0.002 Score=63.36 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=52.9
Q ss_pred eEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 290 a~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
..|+||||.||||+ ...||. ++|++ |+++++..++.+.+. | .-.++|.|+. ..+.+
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~--l~~i~-----g~~li~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~ 60 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQ--LIPVA-----GKPIIQYAIEDLREA--------G---IEDIGIVVGP---TGEEI 60 (236)
T ss_pred eEEEECCCccccccccccCCCce--eeEEC-----CcchHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHH
Confidence 45899999999996 588999 98874 899999998887542 3 1256788887 68888
Q ss_pred HHHHHHcCCCCC
Q 008010 367 TSLCERLRWFGR 378 (581)
Q Consensus 367 ~~flekn~yFGl 378 (581)
.+++++...+|+
T Consensus 61 ~~~~~~~~~~~~ 72 (236)
T cd04189 61 KEALGDGSRFGV 72 (236)
T ss_pred HHHhcchhhcCC
Confidence 899887655554
No 36
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.90 E-value=0.062 Score=53.07 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=48.4
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+- ..||. ++|++ |+++++..++.+... | .-.++|.|.. .++.+.
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~--llpv~-----g~pli~~~l~~l~~~--------g---~~~v~iv~~~---~~~~~~ 61 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKP--LVEFC-----NKPMIEHQIEALAKA--------G---VKEIILAVNY---RPEDMV 61 (233)
T ss_pred EEEecCCCccccCccccCCCCc--cCeEC-----CcchHHHHHHHHHHC--------C---CcEEEEEeee---CHHHHH
Confidence 48999999999975 68998 88874 889999999987662 3 1246788887 678888
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+++.+
T Consensus 62 ~~l~~ 66 (233)
T cd06425 62 PFLKE 66 (233)
T ss_pred HHHhc
Confidence 88875
No 37
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.89 E-value=0.0014 Score=63.71 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=48.0
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHH
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~f 369 (581)
..|+||||.|||||. .||. ++++ .|+++++..++.+... + .=.++|.|+. .++.|+.+
T Consensus 2 ~aIILAgG~gsRmg~-~~K~--Ll~i-----~GkplI~~vi~~l~~~--------~---i~~I~Vv~~~---~~~~~~~~ 59 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKP--LIEV-----CGRCLIDHVLSPLLKS--------K---VNNIIIATSP---HTPKTEEY 59 (183)
T ss_pred eEEEECCccCccCCC-CCce--EeEE-----CCEEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHHHH
Confidence 358999999999985 7888 8887 4999999999988652 1 1246788887 67788888
Q ss_pred HHH
Q 008010 370 CER 372 (581)
Q Consensus 370 lek 372 (581)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 875
No 38
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=96.85 E-value=0.045 Score=57.69 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=52.4
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+- ..||. ++|++ |+++++..++.+.+. | .-.++|+|+.. ..+...
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~--l~pv~-----g~pli~~~l~~l~~~--------g---i~~i~vv~~~~--~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQ--LIPVA-----NKPILQYAIEDLAEA--------G---ITDIGIVVGPV--TGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCcc--ccEEC-----CEeHHHHHHHHHHHC--------C---CCEEEEEeCCC--CHHHHH
Confidence 37899999999974 88999 98874 889999998877552 3 23577888873 678889
Q ss_pred HHHHHcCCCCC
Q 008010 368 SLCERLRWFGR 378 (581)
Q Consensus 368 ~flekn~yFGl 378 (581)
++|.+...||+
T Consensus 62 ~~~~~~~~~~~ 72 (353)
T TIGR01208 62 EIVGEGERFGA 72 (353)
T ss_pred HHHhcccccCc
Confidence 99987555654
No 39
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.85 E-value=0.054 Score=59.15 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=109.8
Q ss_pred CceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCc-cHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCc
Q 008010 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkS-llql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (581)
.++..|+||||.||||.- .-||. ++|++ |++ +++..++++... | .-.++|.|.. .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~--llpv~-----gkp~lI~~~l~~l~~~--------G---i~~i~vv~~~---~ 72 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKP--AVYFG-----GKFRIIDFALSNCINS--------G---IRRIGVLTQY---K 72 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcce--eEEEC-----CEEEEhHHHHHHHHHC--------C---CCeEEEEecC---C
Confidence 467789999999999986 78998 98884 886 999999877652 4 2356888887 7
Q ss_pred hHHHHHHHHHcCCCCCCCC----ceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCce
Q 008010 363 HERITSLCERLRWFGRGQS----SFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK 438 (581)
Q Consensus 363 he~T~~flekn~yFGl~~~----qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gik 438 (581)
.+...++|.+. +++.+. .+.++.+. ........|-|.|+-..... +.+....-+
T Consensus 73 ~~~i~~~~~~~--~~~~~~~~~~~i~i~~~~---------------~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d 130 (425)
T PRK00725 73 AHSLIRHIQRG--WSFFREELGEFVDLLPAQ---------------QRVDEENWYRGTADAVYQNL-----DIIRRYDPK 130 (425)
T ss_pred HHHHHHHHHhh--hcccccCCCCeEEEeCCc---------------ccCCCCccccCcHHHHHHHH-----HHHHhcCCC
Confidence 88899999753 232111 11111110 01111234567766433322 233333347
Q ss_pred EEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccC-CCcccceEEEEeecCCCccccceEEEEecccCCCCCCC
Q 008010 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR 517 (581)
Q Consensus 439 yi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~-~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~ 517 (581)
++.|.+-|++. ..| +-.++-.+...+..+-+.. .+.+ ....+-|++.. +.+|+ ++++.|=|.. ...
T Consensus 131 ~~lVl~gD~l~-~~d--l~~ll~~h~~~~~~~tl~~-~~~~~~~~~~yG~v~~--d~~~~------V~~~~EKp~~-~~~ 197 (425)
T PRK00725 131 YVVILAGDHIY-KMD--YSRMLADHVESGADCTVAC-LEVPREEASAFGVMAV--DENDR------ITAFVEKPAN-PPA 197 (425)
T ss_pred EEEEecCCeEe-ccC--HHHHHHHHHHcCCCEEEEE-EecchhhcccceEEEE--CCCCC------EEEEEECCCC-ccc
Confidence 88999999853 333 2234545444454444443 1111 22234456432 12343 2344442221 000
Q ss_pred CCCCCCCcccccCCccceeEEeHHHHHHhh
Q 008010 518 GPFSSNGLQADFPANTNILYVDLASAELVG 547 (581)
Q Consensus 518 ~~~~dg~l~S~F~~NiN~l~fsL~~L~~v~ 547 (581)
.. ..... +-.|+.+++|+-+.|.+.+
T Consensus 198 ~~--~~~~~--~l~n~GIYi~~~~~L~~~L 223 (425)
T PRK00725 198 MP--GDPDK--SLASMGIYVFNADYLYELL 223 (425)
T ss_pred cc--cCccc--eEEEeeEEEEeHHHHHHHH
Confidence 00 01101 3358889999999876654
No 40
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.84 E-value=0.077 Score=53.36 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=76.1
Q ss_pred EEecCC--CcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 292 IYPLGG--SADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 292 VlLAGG--qGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
|+|||| .||||.- ..||. ++|++ |+++++..++.+..+ .| .--++|.|.. ..+.+
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~--llpv~-----g~plI~~~l~~l~~~-------~g---i~~i~iv~~~---~~~~i 61 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKP--LFPVA-----GKPMIHHHIEACAKV-------PD---LKEVLLIGFY---PESVF 61 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcc--cCeEC-----CeeHHHHHHHHHHhc-------CC---CcEEEEEecC---CHHHH
Confidence 678898 8999987 78998 88874 899999998877652 13 1234566665 67888
Q ss_pred HHHHHHcC-CCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeC
Q 008010 367 TSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQV 445 (581)
Q Consensus 367 ~~flekn~-yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~v 445 (581)
.+++.+.. .+|+ .|.+..| ..|-|.|+-..... +.+...+-+++.|.+.
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~----------------------~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~g 111 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQE----------------------YKPLGTAGGLYHFR-----DQILAGNPSAFFVLNA 111 (257)
T ss_pred HHHHHhcccccCc---eEEEecC----------------------CccCCcHHHHHHHH-----HHhhccCCCCEEEEcC
Confidence 89987642 2333 2222221 12345555332221 2222223468889999
Q ss_pred CCcccccchhhHHHhhhhhhcCCceeEE
Q 008010 446 SNVVAATDLTLLALAGIGLHHGKKLGFA 473 (581)
Q Consensus 446 DN~Lak~DP~~~~~lG~~~~~~~~~~~~ 473 (581)
|++. ..|.. .++-.+...+..+.+.
T Consensus 112 D~~~-~~dl~--~~~~~h~~~~~~~tl~ 136 (257)
T cd06428 112 DVCC-DFPLQ--ELLEFHKKHGASGTIL 136 (257)
T ss_pred Ceec-CCCHH--HHHHHHHHcCCCEEEE
Confidence 9873 33322 3455554555444433
No 41
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.73 E-value=0.053 Score=57.14 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=47.3
Q ss_pred EEecCCCcCCCCC---CCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 292 VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
|+||||.||||+- +.||. ++|++ |+ ++++..++.+... | .-.++|.|.. ..+...
T Consensus 2 iILAaG~gtRl~plt~~~pK~--llpv~-----g~~pli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKP--AVPFG-----GKYRIIDFPLSNCINS--------G---IRRIGVLTQY---KSHSLN 60 (361)
T ss_pred EEeCCCCCCccchhhhCCccc--cceec-----ceeeEeeehhhhhhhc--------C---CceEEEEecc---ChHHHH
Confidence 7999999999974 68998 98884 88 7999998877652 3 2256888887 567788
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++|.+
T Consensus 61 ~~~~~ 65 (361)
T TIGR02091 61 RHIQR 65 (361)
T ss_pred HHHHh
Confidence 88875
No 42
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.73 E-value=0.0029 Score=61.86 Aligned_cols=60 Identities=20% Similarity=0.388 Sum_probs=47.4
Q ss_pred eEEEecCCCcCCCCC-CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 290 GEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 290 a~VlLAGGqGTRLG~-~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
..|+||||+|||||. ..| +++| +||.+...-++.+..+ .+ -+++-||. ++..|++
T Consensus 2 ~~iiMAGGrGtRmg~~EKP----lleV-----~GkpLI~~v~~al~~~-------~d-----~i~v~isp---~tp~t~~ 57 (177)
T COG2266 2 MAIIMAGGRGTRMGRPEKP----LLEV-----CGKPLIDRVLEALRKI-------VD-----EIIVAISP---HTPKTKE 57 (177)
T ss_pred ceEEecCCcccccCCCcCc----chhh-----CCccHHHHHHHHHHhh-------cC-----cEEEEeCC---CCHhHHH
Confidence 358999999999995 555 7776 6999998887766552 12 36888998 8999999
Q ss_pred HHHHc
Q 008010 369 LCERL 373 (581)
Q Consensus 369 flekn 373 (581)
|+++-
T Consensus 58 ~~~~~ 62 (177)
T COG2266 58 YLESV 62 (177)
T ss_pred HHHhc
Confidence 99984
No 43
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.72 E-value=0.041 Score=59.74 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=95.6
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fl 370 (581)
.|+||||.||||+...||- ++|+ .|+++++..++.+... +. .++|.|+. ..+.+.+++
T Consensus 3 avIlA~G~gtRl~~~~pK~--l~~v-----~gkpli~~~l~~l~~~--------~~----~i~vv~~~---~~~~i~~~~ 60 (448)
T PRK14357 3 ALVLAAGKGTRMKSKIPKV--LHKI-----SGKPMINWVIDTAKKV--------AQ----KVGVVLGH---EAELVKKLL 60 (448)
T ss_pred EEEECCCCCccCCCCCCce--eeEE-----CCeeHHHHHHHHHHhc--------CC----cEEEEeCC---CHHHHHHhc
Confidence 4899999999999888998 8887 4899999998876651 21 35666665 345555555
Q ss_pred HHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEEEeCCCcc
Q 008010 371 ERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 (581)
Q Consensus 371 ekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v~~vDN~L 449 (581)
.. .+.++.|+ .|.|-++ ++.++. .++ .-+++++.+.|+++
T Consensus 61 ~~---------~~~~~~~~----------------------~~~g~~~ai~~a~~---~l~-----~~~~vlv~~gD~p~ 101 (448)
T PRK14357 61 PE---------WVKIFLQE----------------------EQLGTAHAVMCARD---FIE-----PGDDLLILYGDVPL 101 (448)
T ss_pred cc---------ccEEEecC----------------------CCCChHHHHHHHHH---hcC-----cCCeEEEEeCCccc
Confidence 32 12233331 1234333 333332 121 13789999999987
Q ss_pred cc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcccc
Q 008010 450 AA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQAD 528 (581)
Q Consensus 450 ak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~ 528 (581)
.. .|-. .++-.+...+..+.+.. .+...+ ..-|++.. .+|+ +..+|...-+.. .. ..
T Consensus 102 i~~~~i~--~l~~~~~~~~~d~ti~~-~~~~~~-~~~g~v~~---d~g~----v~~~e~~~~~~~-------~~-~~--- 159 (448)
T PRK14357 102 ISENTLK--RLIEEHNRKGADVTILV-ADLEDP-TGYGRIIR---DGGK----YRIVEDKDAPEE-------EK-KI--- 159 (448)
T ss_pred CCHHHHH--HHHHHHHhcCCeEEEEE-EEcCCC-CCcEEEEE---cCCe----EEEEECCCCChH-------Hh-cC---
Confidence 65 3221 23333333344443332 222222 22344332 2555 455564322110 00 00
Q ss_pred cCCccceeEEeHHHHHHhh
Q 008010 529 FPANTNILYVDLASAELVG 547 (581)
Q Consensus 529 F~~NiN~l~fsL~~L~~v~ 547 (581)
+-.|+.+++|+-+.|.+.+
T Consensus 160 ~~~~~GiYv~~~~~l~~~~ 178 (448)
T PRK14357 160 KEINTGIYVFSGDFLLEVL 178 (448)
T ss_pred cEEEeEEEEEEHHHHHHHH
Confidence 2248889999988876654
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=96.69 E-value=0.09 Score=52.86 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=49.3
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.||||. ...||. ++|++ |+++++..++.+.+ .| .-.++|.++. ..+.+++
T Consensus 2 iilaaG~g~Rl~plt~~~pK~--llpv~-----~~p~i~~~~~~~~~--------~g---i~~i~iv~~~---~~~~i~~ 60 (253)
T cd02524 2 VILAGGLGTRLSEETELKPKP--MVEIG-----GRPILWHIMKIYSH--------YG---HNDFILCLGY---KGHVIKE 60 (253)
T ss_pred EEEecCCccccCCccCCCCce--EEEEC-----CEEHHHHHHHHHHh--------CC---CceEEEECCC---CHHHHHH
Confidence 789999999996 378999 98874 89999877666544 23 2246777776 6788999
Q ss_pred HHHHcCCCC
Q 008010 369 LCERLRWFG 377 (581)
Q Consensus 369 flekn~yFG 377 (581)
|+++...||
T Consensus 61 ~~~~~~~~~ 69 (253)
T cd02524 61 YFLNYFLHN 69 (253)
T ss_pred HHHhhhhhc
Confidence 999866555
No 45
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.68 E-value=0.0034 Score=62.27 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=48.6
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
++.|+||||.|+|||.+.||- .+++ .|+++++..+++++... ..-.++|.|++ .......+
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~--l~~l-----~gkpll~~~i~~~~~~~----------~~~~ivVv~~~--~~~~~~~~ 63 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKM--WLDL-----VGEPIFIHALRPFLADN----------RCSKIIIVTQA--QERKHVQD 63 (230)
T ss_pred eEEEEECCeeccccCCCCCcc--eeEE-----CCeEHHHHHHHHHHcCC----------CCCEEEEEeCh--hhHHHHHH
Confidence 577999999999999888998 8887 49999999999776521 12256677766 24455556
Q ss_pred HHHHc
Q 008010 369 LCERL 373 (581)
Q Consensus 369 flekn 373 (581)
+++++
T Consensus 64 ~~~~~ 68 (230)
T PRK13385 64 LMKQL 68 (230)
T ss_pred HHHhc
Confidence 66653
No 46
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.66 E-value=0.0043 Score=60.57 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=50.0
Q ss_pred EEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.||||+- ..||. ++|++ |+++++..++.+.+. | .--++|.|.. ..+.+.+
T Consensus 3 iIlaaG~g~Rl~plt~~~pK~--llpi~-----g~~li~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~~ 61 (221)
T cd06422 3 MILAAGLGTRMRPLTDTRPKP--LVPVA-----GKPLIDHALDRLAAA--------G---IRRIVVNTHH---LADQIEA 61 (221)
T ss_pred EEEcCCCCCccccccCCCCCc--eeeEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEccC---CHHHHHH
Confidence 8899999999975 68998 88874 899999999988662 3 1235666665 7888899
Q ss_pred HHHHcCCCCC
Q 008010 369 LCERLRWFGR 378 (581)
Q Consensus 369 flekn~yFGl 378 (581)
++.. .++|+
T Consensus 62 ~~~~-~~~~~ 70 (221)
T cd06422 62 HLGD-SRFGL 70 (221)
T ss_pred HHhc-ccCCc
Confidence 9887 45554
No 47
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.66 E-value=0.0048 Score=64.55 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=51.4
Q ss_pred ceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
.+-.|+||||.||||. ..-||- ++||+ ||++++..++.+... | .--++|.|+. ..+
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKp--LvpV~-----gkPiI~~vl~~l~~~--------G---i~~ivivv~~---~~~ 61 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKE--MLPIV-----DKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SKN 61 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCce--eeEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEecC---ChH
Confidence 4567999999999998 477998 99984 999999999887652 4 2356888887 688
Q ss_pred HHHHHHHH
Q 008010 365 RITSLCER 372 (581)
Q Consensus 365 ~T~~flek 372 (581)
...++|..
T Consensus 62 ~i~~~~~~ 69 (297)
T TIGR01105 62 AVENHFDT 69 (297)
T ss_pred HHHHHHhc
Confidence 89999965
No 48
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=96.59 E-value=0.0049 Score=60.87 Aligned_cols=99 Identities=24% Similarity=0.313 Sum_probs=66.0
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.+..|+||||+|.|| .+|+ ++++ +|++++|+.++++... +. .++|.... +.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~--l~~~-----~g~~lie~v~~~L~~~-----------~~-~vvi~~~~---~~~~-- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKA--LLPL-----NGRPLIEHVIDRLRPQ-----------VD-VVVISANR---NQGR-- 56 (192)
T ss_pred CceEEEecCCccccc---cccc--ccee-----CCeEHHHHHHHHhccc-----------CC-EEEEeCCC---chhh--
Confidence 467799999999999 8898 8876 5999999999988663 34 56666554 2221
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+..|| +|.+.+... .. .| =.|||.+| ..-+-+|++|..+|.
T Consensus 57 -----~~~~g-------------~~vv~D~~~--------~~--GP--L~Gi~~al---------~~~~~~~~~v~~~D~ 97 (192)
T COG0746 57 -----YAEFG-------------LPVVPDELP--------GF--GP--LAGILAAL---------RHFGTEWVLVLPCDM 97 (192)
T ss_pred -----hhccC-------------CceeecCCC--------CC--CC--HHHHHHHH---------HhCCCCeEEEEecCC
Confidence 22232 455554311 00 11 13445544 456689999999999
Q ss_pred ccccc
Q 008010 448 VVAAT 452 (581)
Q Consensus 448 ~Lak~ 452 (581)
+.+..
T Consensus 98 P~i~~ 102 (192)
T COG0746 98 PFIPP 102 (192)
T ss_pred CCCCH
Confidence 99984
No 49
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.51 E-value=0.0048 Score=57.66 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=38.9
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
++.|+||||.|+|||. ||. ++++ .|+++++..++++... + .-.++|-|+.
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~--l~~~-----~g~~li~~~i~~l~~~--------~---~~~i~vv~~~ 50 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKL--LLPL-----DGKPLLRHALDAALAA--------G---LSRVIVVLGA 50 (186)
T ss_pred CeEEEECCCCCCCCCC--Cce--eCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEECCC
Confidence 3568999999999985 898 8776 5999999999987652 2 1256677766
No 50
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.47 E-value=0.0043 Score=63.59 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=37.1
Q ss_pred CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHH
Q 008010 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~l 336 (581)
..++.|+||||.|+|||...||- .+++ .|+++++..++.+...
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKq--ll~l-----~Gkpll~~tl~~~~~~ 65 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQ--YLPL-----LGQPIALYSLYTFARM 65 (252)
T ss_pred CceEEEEEcccccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHHhC
Confidence 35788999999999999989999 8887 4999999988877653
No 51
>PRK10122 GalU regulator GalF; Provisional
Probab=96.46 E-value=0.0091 Score=62.34 Aligned_cols=64 Identities=14% Similarity=0.345 Sum_probs=51.7
Q ss_pred CceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 287 PELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
+.+..|++|||.||||. ..-||- ++||+ ||++++..++.+... | .--++|+|.. ..
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~--llpi~-----gkpiI~~~l~~l~~~--------G---i~~i~iv~~~---~~ 60 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKE--MLPIV-----DKPMIQYIVDEIVAA--------G---IKEIVLVTHA---SK 60 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCce--eeEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEcCC---Ch
Confidence 35667999999999998 578998 99984 899999999887662 4 2356788876 78
Q ss_pred HHHHHHHH
Q 008010 364 ERITSLCE 371 (581)
Q Consensus 364 e~T~~fle 371 (581)
+.+.++|.
T Consensus 61 ~~i~~~~~ 68 (297)
T PRK10122 61 NAVENHFD 68 (297)
T ss_pred HHHHHHHh
Confidence 88999996
No 52
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.43 E-value=0.0088 Score=58.03 Aligned_cols=65 Identities=25% Similarity=0.274 Sum_probs=48.0
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.|+||+ ...||. ++|+ .|+++++..++++... | +. .++|.++. ..+..++
T Consensus 2 vIlaaG~g~R~~plt~~~pK~--ll~~-----~g~pli~~~l~~l~~~--------~--~~-~iivv~~~---~~~~i~~ 60 (220)
T cd06426 2 VIMAGGKGTRLRPLTENTPKP--MLKV-----GGKPILETIIDRFIAQ--------G--FR-NFYISVNY---LAEMIED 60 (220)
T ss_pred EEecCCCccccCcccCCCCCc--cCeE-----CCcchHHHHHHHHHHC--------C--Cc-EEEEECcc---CHHHHHH
Confidence 799999999996 368998 8887 4899999999988663 3 11 45677776 5677788
Q ss_pred HHHHcCCCC
Q 008010 369 LCERLRWFG 377 (581)
Q Consensus 369 flekn~yFG 377 (581)
++.+...+|
T Consensus 61 ~~~~~~~~~ 69 (220)
T cd06426 61 YFGDGSKFG 69 (220)
T ss_pred HHCCccccC
Confidence 877643333
No 53
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.41 E-value=0.0061 Score=62.17 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+..|+||.|.|+|||-+-||. ++.++ |++++..++++|... | ..-++|.|+.. ..+-..+
T Consensus 4 ~kavILAAG~GsRlg~~~PK~--Lvev~-----gr~ii~~~i~~L~~~--------g---i~e~vvV~~g~--~~~lve~ 63 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKA--LVEVG-----GREIIYRTIENLAKA--------G---ITEFVVVTNGY--RADLVEE 63 (239)
T ss_pred eeEEEEecccccccCCCCCch--hhhcC-----CeEeHHHHHHHHHHc--------C---CceEEEEeccc--hHHHHHH
Confidence 345899999999999999999 88874 999999998887663 3 45679999775 7888888
Q ss_pred HHHHcCC
Q 008010 369 LCERLRW 375 (581)
Q Consensus 369 flekn~y 375 (581)
|+.++++
T Consensus 64 ~l~~~~~ 70 (239)
T COG1213 64 FLKKYPF 70 (239)
T ss_pred HHhcCCc
Confidence 8888774
No 54
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.39 E-value=0.0039 Score=62.90 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=47.6
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
++.|+||||.|+|||.+.||- .+++ .|+++++..++.+++.. ..--++|..++ +..+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQ--f~~l-----~Gkpvl~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQ--FLEL-----GGKPVLEYTLEAFLASP----------EIDEIVVVVPP--EDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GG--GSEE-----TTEEHHHHHHHHHHTTT----------TESEEEEEESG--GGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCe--eeEE-----CCeEeHHHHHHHHhcCC----------CCCeEEEEecc--hhHHHHHH
Confidence 567999999999999999998 8886 49999999988776531 12235566666 46677777
Q ss_pred HHHH
Q 008010 369 LCER 372 (581)
Q Consensus 369 flek 372 (581)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7777
No 55
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=96.36 E-value=0.26 Score=49.94 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=78.4
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+- .-||- ++|++ |+++++..++.+.+. | .--++|.++. ..+.+.
T Consensus 2 avilaaG~gtRl~~~t~~~pK~--llpv~-----g~pii~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 60 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKP--MVEIG-----GKPILWHIMKIYSHH--------G---INDFIICCGY---KGYVIK 60 (254)
T ss_pred EEEEcCccccccCccccCCCcc--eeEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEcCC---CHHHHH
Confidence 37899999999955 48998 98874 899998877766542 3 2245666665 678889
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccc-cccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkil-l~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (581)
++|.+...+|.+ -++. ++++.+...... .+.. +. ......|-|.||-...... .+ +-+++.|.+-|
T Consensus 61 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~--~~~~~~~~gt~~al~~~~~--~i------~~e~flv~~gD 127 (254)
T TIGR02623 61 EYFANYFLHMSD-VTFH-MADNTMEVHHKR-VEPWRVT--LVDTGESTQTGGRLKRVRE--YL------DDEAFCFTYGD 127 (254)
T ss_pred HHHHhhhhcccC-eeEE-eccccccccccc-CCcccee--eeecCCcCCcHHHHHHHHH--hc------CCCeEEEEeCC
Confidence 999764433321 1222 233332222211 1000 00 0011246787765443322 11 13567788889
Q ss_pred CcccccchhhHHHhhhhhhcCCcee
Q 008010 447 NVVAATDLTLLALAGIGLHHGKKLG 471 (581)
Q Consensus 447 N~Lak~DP~~~~~lG~~~~~~~~~~ 471 (581)
++ ...|.. .++-.+...+.++.
T Consensus 128 ~i-~~~dl~--~~~~~h~~~~~d~t 149 (254)
T TIGR02623 128 GV-ADIDIK--ALIAFHRKHGKKAT 149 (254)
T ss_pred eE-ecCCHH--HHHHHHHHcCCCEE
Confidence 85 334433 34444444444443
No 56
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=96.19 E-value=0.014 Score=57.87 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=50.6
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+- ..||. ++|++ ++++++..++.+.+. | .-.++|.+.. ...+...
T Consensus 3 ~iIlAaG~gtRl~plt~~~pK~--llpv~-----~~pli~~~l~~l~~~--------g---i~~i~vv~~~--~~~~~~~ 62 (240)
T cd02538 3 GIILAGGSGTRLYPLTKVVSKQ--LLPVY-----DKPMIYYPLSTLMLA--------G---IREILIISTP--EDLPLFK 62 (240)
T ss_pred EEEEcCcCcccCCccccCCCce--eeEEC-----CEEhHHHHHHHHHHC--------C---CCEEEEEeCc--chHHHHH
Confidence 58999999999976 78999 98884 899999998877542 3 2356677765 2456788
Q ss_pred HHHHHcCCCCC
Q 008010 368 SLCERLRWFGR 378 (581)
Q Consensus 368 ~flekn~yFGl 378 (581)
++|.....+|+
T Consensus 63 ~~l~~~~~~~~ 73 (240)
T cd02538 63 ELLGDGSDLGI 73 (240)
T ss_pred HHHhcccccCc
Confidence 88876555554
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.17 E-value=0.045 Score=60.79 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=43.3
Q ss_pred EEEecCCCcCCCC----CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 291 EIYPLGGSADRLG----LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 291 ~VlLAGGqGTRLG----~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
.|+||||.||||+ ...||- ++|++ .++|++|..++++..+ | + -..+|.|+.. -....
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~--~l~l~----g~~~ll~~tl~~l~~~--------~--~-~~iviv~~~~--~~~~~ 63 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQ--FLALV----GDLTMLQQTLKRLAGL--------P--C-SSPLVICNEE--HRFIV 63 (468)
T ss_pred EEEecCcccccCCccccCCCCCc--eeEcC----CCCcHHHHHHHHHhcC--------C--C-cCcEEecCHH--HHHHH
Confidence 4899999999998 347998 98873 2489999999987653 2 1 1344777751 22345
Q ss_pred HHHHHH
Q 008010 367 TSLCER 372 (581)
Q Consensus 367 ~~flek 372 (581)
.+.+++
T Consensus 64 ~~~l~~ 69 (468)
T TIGR01479 64 AEQLRE 69 (468)
T ss_pred HHHHHH
Confidence 555554
No 58
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.15 E-value=0.005 Score=60.13 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=33.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCC-CccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~g-kSllql~~e~I~~ 335 (581)
+++.|+||||+|+||| .+|. ++++ .| +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~--ll~~-----~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKA--LLPF-----GSYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCce--EEEe-----CCCCcHHHHHHHHHHH
Confidence 5788999999999998 4787 8876 48 9999999998764
No 59
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=96.12 E-value=0.12 Score=57.02 Aligned_cols=186 Identities=13% Similarity=0.073 Sum_probs=120.3
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.+..|+||-|+||||-++-||. +=|+ .||+.++.-++....+. . =-+++..+. -.+..+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKV--LH~v-----aGkpMl~hVi~~a~~l~--------~---~~i~vVvGh---~ae~V~ 60 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKV--LHPV-----AGKPMLEHVIDAARALG--------P---DDIVVVVGH---GAEQVR 60 (460)
T ss_pred CceEEEEecCCCccccCCCccc--chhc-----cCccHHHHHHHHHhhcC--------c---ceEEEEEcC---CHHHHH
Confidence 3567999999999999999999 7665 59999999988877753 1 112334444 467777
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCce-EEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRK-GATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gik-yi~v~~vD 446 (581)
+-+.+.. ++.|+.|.. |-|-|.--.+ ..+.+..+.+ .+.|.+-|
T Consensus 61 ~~~~~~~-------~v~~v~Q~e----------------------qlGTgHAV~~------a~~~l~~~~~g~vLVl~GD 105 (460)
T COG1207 61 EALAERD-------DVEFVLQEE----------------------QLGTGHAVLQ------ALPALADDYDGDVLVLYGD 105 (460)
T ss_pred HHhcccc-------CceEEEecc----------------------cCChHHHHHh------hhhhhhcCCCCcEEEEeCC
Confidence 7776532 577888865 1233322221 1233445555 88999999
Q ss_pred CcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcc
Q 008010 447 NVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQ 526 (581)
Q Consensus 447 N~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~ 526 (581)
=+|...+.. -.++......+..+...+ . +.....|-|-++++ .+|+ -..+||.-+.++++ . .+
T Consensus 106 ~PLit~~TL-~~L~~~~~~~~~~~tvLt-~-~~~dP~GYGRIvr~--~~g~---V~~IVE~KDA~~ee-k--------~I 168 (460)
T COG1207 106 VPLITAETL-EELLAAHPAHGAAATVLT-A-ELDDPTGYGRIVRD--GNGE---VTAIVEEKDASEEE-K--------QI 168 (460)
T ss_pred cccCCHHHH-HHHHHhhhhcCCceEEEE-E-EcCCCCCcceEEEc--CCCc---EEEEEEcCCCCHHH-h--------cC
Confidence 999996543 246666666666776665 2 23333466666663 4555 25689988877741 1 11
Q ss_pred cccCCccceeEEeHHHHHHhhc
Q 008010 527 ADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 527 S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
--.|+-++.|+-..|.+.+.
T Consensus 169 --~eiNtGiy~f~~~~L~~~L~ 188 (460)
T COG1207 169 --KEINTGIYAFDGAALLRALP 188 (460)
T ss_pred --cEEeeeEEEEcHHHHHHHHH
Confidence 11288888999888888765
No 60
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=96.04 E-value=0.14 Score=49.59 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=32.0
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+++.|+||||.|+||+ .|- ++++ .|+++++..++++.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~--l~~l-----~Gkpll~~~l~~l~~ 38 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKN--IRPL-----GGKPLIAWTIEAALE 38 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccc--cchh-----CCccHHHHHHHHHHh
Confidence 4677999999999996 477 7776 599999999998876
No 61
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.04 E-value=0.01 Score=55.99 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=37.9
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
.|+||||.|+||| .||. ++++ .|+++++..++++++. + .-+++|.|+.
T Consensus 2 ~iIla~G~s~R~g--~~K~--ll~~-----~g~pll~~~i~~l~~~--------~---~~~iivv~~~ 49 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKL--LLPY-----KGKTILEHVVDNALRL--------F---FDEVILVLGH 49 (188)
T ss_pred eEEECCCCcccCC--CCce--eccc-----CCeeHHHHHHHHHHHc--------C---CCcEEEEeCC
Confidence 5899999999998 5888 8776 4999999999887652 2 2356777776
No 62
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=96.03 E-value=0.011 Score=63.79 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=47.8
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fl 370 (581)
.|+||||.||||+...||- ++|+ .|+++++..++++.+. | ...++|.++. ..+.+.+++
T Consensus 3 aiIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iiiv~~~---~~~~i~~~~ 61 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKV--LHPL-----AGKPMLEHVIDAARAL--------G---PQKIHVVYGH---GAEQVRKAL 61 (451)
T ss_pred EEEEcCCCCcccCCCCchh--hcee-----CCccHHHHHHHHHHhC--------C---CCeEEEEECC---CHHHHHHHh
Confidence 5899999999999888998 8887 4999999998877652 3 2356788886 466777777
Q ss_pred HH
Q 008010 371 ER 372 (581)
Q Consensus 371 ek 372 (581)
.+
T Consensus 62 ~~ 63 (451)
T TIGR01173 62 AN 63 (451)
T ss_pred cC
Confidence 65
No 63
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.02 E-value=0.011 Score=63.96 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=50.3
Q ss_pred CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
.++..|+||||.|||||...||. ++|+ .|+++++..++.+... | .-.++|.++. .++..
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~--ll~v-----~gkpli~~~l~~l~~~--------g---i~~ivvv~~~---~~~~i 62 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKV--LHPV-----AGRPMLAHVLAAAASL--------G---PSRVAVVVGP---GAEAV 62 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcc--cCEE-----CCchHHHHHHHHHHhC--------C---CCcEEEEECC---CHHHH
Confidence 35678999999999999878999 8887 4899999999987652 2 2356777776 56777
Q ss_pred HHHHHH
Q 008010 367 TSLCER 372 (581)
Q Consensus 367 ~~flek 372 (581)
.+++.+
T Consensus 63 ~~~~~~ 68 (446)
T PRK14353 63 AAAAAK 68 (446)
T ss_pred HHHhhc
Confidence 777754
No 64
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=95.88 E-value=0.081 Score=52.22 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
+++.|+||||.++||+ +|- ++|+ .|+++++..++++.+.. + .-.++|-| . ++.+.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~--l~~i-----~GkPli~~~i~~l~~~~-------~---~~~ivv~t-~----~~~i~ 56 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKP--LLDI-----LGKPMIQHVYERAAQAA-------G---VEEVYVAT-D----DQRIE 56 (238)
T ss_pred cEEEEEecCCCCCCCC---CCc--cCcc-----CCcCHHHHHHHHHHhcC-------C---CCeEEEEC-C----hHHHH
Confidence 4677999999999996 477 8887 49999999999876631 1 12334433 2 36788
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++ +|. .+ +.+. + ..+.|.+++..++.. .+-+++.+.+.|+
T Consensus 57 ~~~~~---~~~---~v--~~~~-------~-------------~~~~g~~~~~~a~~~---------~~~d~~lv~~~D~ 99 (238)
T PRK13368 57 DAVEA---FGG---KV--VMTS-------D-------------DHLSGTDRLAEVMLK---------IEADIYINVQGDE 99 (238)
T ss_pred HHHHH---cCC---eE--EecC-------c-------------cCCCccHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 88875 232 11 1110 1 113455555544332 1567899999999
Q ss_pred cccc
Q 008010 448 VVAA 451 (581)
Q Consensus 448 ~Lak 451 (581)
++..
T Consensus 100 P~i~ 103 (238)
T PRK13368 100 PMIR 103 (238)
T ss_pred CcCC
Confidence 9876
No 65
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.87 E-value=0.0065 Score=57.36 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=38.0
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
+.|+||||.|+|||. ||. ++++ .|+++++..++++... .-+++|.|+.
T Consensus 2 ~~iILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~~------------~~~iivv~~~ 49 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKA--LLEL-----GGKPLLEHVLERLKPL------------VDEVVISANR 49 (181)
T ss_pred cEEEECCCccccCCC--Cce--eeEE-----CCEEHHHHHHHHHHhh------------cCEEEEECCC
Confidence 568999999999996 888 8877 4999999999877652 1246677776
No 66
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.78 E-value=0.0067 Score=56.01 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=38.3
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
.|+||||.|+|||- ||. ++++ .|+++++..++++... | .=+++|.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~--l~~i-----~g~~li~~~l~~l~~~--------~---~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKA--LLPI-----GGKPLIERVLEALREA--------G---VDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGG--GSEE-----TTEEHHHHHHHHHHHH--------T---ESEEEEEEST
T ss_pred CEEECCcCcccCCC--Ccc--ceeE-----CCccHHHHHHHHhhcc--------C---CceEEEecCh
Confidence 37999999999995 888 8887 5999999999988775 1 1366777765
No 67
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.71 E-value=0.0081 Score=58.57 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=33.5
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
.|+||||.|+|||...||- ++++ .|+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~--l~~l-----~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQ--YLEL-----GGRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCcc--EeEE-----CCeEHHHHHHHHHhc
Confidence 5899999999999888998 8887 499999999998765
No 68
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=95.67 E-value=0.026 Score=55.48 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=46.9
Q ss_pred EEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.|+||+ ...||. ++|++ |+++++..++.+.+. | .-.++|.+.. .-.+.++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~--Llpv~-----g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~~i~ 62 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKA--LLPVA-----NKPMIWYPLDWLEKA--------G---FEDVIVVVPE--EEQAEIS 62 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcc--cCEEC-----CeeHHHHHHHHHHHC--------C---CCeEEEEECH--HHHHHHH
Confidence 3779999999997 578999 98884 899999988877652 3 1245677775 2345688
Q ss_pred HHHHHc
Q 008010 368 SLCERL 373 (581)
Q Consensus 368 ~flekn 373 (581)
+++++.
T Consensus 63 ~~l~~~ 68 (214)
T cd04198 63 TYLRSF 68 (214)
T ss_pred HHHHhc
Confidence 888764
No 69
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.67 E-value=0.01 Score=56.84 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+.|+||||.|+|||. +|. ++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKL--ALPL-----GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cce--ecee-----CCccHHHHHHHHHHh
Confidence 458999999999995 688 8776 599999999887654
No 70
>PLN02917 CMP-KDO synthetase
Probab=95.49 E-value=0.31 Score=51.10 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=67.9
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|++|+|.++||| +|- ++++ .|+++++..++++... + .+..++... ..+.+.
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~--L~~i-----~GkPLL~~vi~~a~~~--------~---~~~~VVV~~----~~e~I~ 101 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKP--LVHI-----LGKPMIQRTWERAKLA--------T---TLDHIVVAT----DDERIA 101 (293)
T ss_pred cEEEEEecCCCCCCCC---CCC--eeeE-----CCEEHHHHHHHHHHcC--------C---CCCEEEEEC----ChHHHH
Confidence 5778999999999997 587 8887 4999999999987653 1 123334433 356777
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
++++++ |. .+..| .+ ..+.|-|.+..++. .+ +...+++.+.+.|.
T Consensus 102 ~~~~~~---~v-----~vi~~-------~~-------------~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~ 146 (293)
T PLN02917 102 ECCRGF---GA-----DVIMT-------SE-------------SCRNGTERCNEALK------KL-EKKYDIVVNIQGDE 146 (293)
T ss_pred HHHHHc---CC-----EEEeC-------Cc-------------ccCCchHHHHHHHH------hc-cCCCCEEEEecCCc
Confidence 777653 21 11111 01 12456666655442 22 23457999999999
Q ss_pred ccccc
Q 008010 448 VVAAT 452 (581)
Q Consensus 448 ~Lak~ 452 (581)
++...
T Consensus 147 PlI~~ 151 (293)
T PLN02917 147 PLIEP 151 (293)
T ss_pred CCCCH
Confidence 99984
No 71
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.49 E-value=0.012 Score=55.78 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.0
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~ 334 (581)
++.|+||||.|||||- .||. .+++ .|+++++..++++.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~--l~~i-----~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKG--LVEL-----GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCc--eeEE-----CCEEHHHHHHHHHH
Confidence 4679999999999983 3998 8776 49999999999874
No 72
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.47 E-value=0.012 Score=57.55 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=33.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+++.|+||||.|+|||. +|. ++++ .|+|+++..++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~--ll~~-----~g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKA--LLPW-----QGVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--Cce--eeEE-----CCEeHHHHHHHHHHh
Confidence 57789999999999995 688 8876 499999999988754
No 73
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.46 E-value=0.022 Score=57.08 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=48.2
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+- ..||. ++|++ |+++++..++.+... | .-.++|+|.. ..+...
T Consensus 3 avIlAaG~gtRl~plt~~~pK~--llpi~-----g~pli~~~l~~l~~~--------g---i~~v~iv~~~---~~~~i~ 61 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKE--MLPIV-----DKPLIQYVVEEAVEA--------G---IEDILIVTGR---GKRAIE 61 (260)
T ss_pred EEEEcccCcccCCCcccCCCce--eEEEC-----CEEHHHHHHHHHHhC--------C---CCEEEEEeCC---cHHHHH
Confidence 48999999999975 78998 88874 899999998877552 3 2257888887 678888
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++|.+
T Consensus 62 ~~~~~ 66 (260)
T TIGR01099 62 DHFDT 66 (260)
T ss_pred HHhcc
Confidence 88863
No 74
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.45 E-value=0.011 Score=57.31 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.1
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+.|+||||.|+|||...||- ++|+ .|+++++..++++..
T Consensus 2 ~~vILAaG~s~R~~~~~~K~--l~~i-----~Gkpll~~~i~~l~~ 40 (218)
T cd02516 2 AAIILAAGSGSRMGADIPKQ--FLEL-----GGKPVLEHTLEAFLA 40 (218)
T ss_pred EEEEECCcccccCCCCCCcc--eeEE-----CCeEHHHHHHHHHhc
Confidence 46899999999999878998 8887 499999999998765
No 75
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=95.43 E-value=0.27 Score=51.47 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=77.7
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.||||- +..||- ++|| -+|...++-++++... | .--+.|.++. .+-...++
T Consensus 4 iILAgG~GTRL~PlT~~~~Kq--LlpV-----~~KPmi~y~l~~L~~a--------G---I~dI~II~~~--~~~~~~~~ 63 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQ--LLPV-----YDKPMIYYPLETLMLA--------G---IRDILIVVGP--EDKPTFKE 63 (286)
T ss_pred EEecCcCccccccccccCCcc--ccee-----cCcchhHhHHHHHHHc--------C---CceEEEEecC--Cchhhhhh
Confidence 789999999974 588988 8887 3899999999988663 4 2245666666 26667777
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++..-..||. ++++-.|+ .|.|=+.-+. +.+++ -|-+-..++--||+
T Consensus 64 llGdgs~~gv---~itY~~Q~----------------------~p~GlA~Av~------~a~~f--v~~~~f~l~LGDNi 110 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQP----------------------EPDGLAHAVL------IAEDF--VGDDDFVLYLGDNI 110 (286)
T ss_pred hhcCccccCc---ceEEEecC----------------------CCCcHHHHHH------HHHhh--cCCCceEEEecCce
Confidence 7777788998 56665554 4566555443 23334 24466778889999
Q ss_pred ccc-cchh
Q 008010 449 VAA-TDLT 455 (581)
Q Consensus 449 Lak-~DP~ 455 (581)
+.. ..+.
T Consensus 111 ~~~~l~~~ 118 (286)
T COG1209 111 FQDGLSEL 118 (286)
T ss_pred eccChHHH
Confidence 887 4443
No 76
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.34 E-value=0.015 Score=57.39 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=35.9
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
++..|+||||.|+|||...||- ++++ .|+++++..++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~--l~~~-----~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQ--YLPL-----GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCce--eeEE-----CCEEHHHHHHHHHHc
Confidence 4677999999999999888998 8886 499999999998765
No 77
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.29 E-value=0.017 Score=55.58 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=33.3
Q ss_pred CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHH
Q 008010 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQ 334 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~ 334 (581)
.++..|+||||.|+||| ..||. .+++ .|+++++..++.+.
T Consensus 2 ~~~~~vILA~G~s~Rm~-~~~K~--ll~~-----~g~~ll~~~i~~l~ 41 (193)
T PRK00317 2 PPITGVILAGGRSRRMG-GVDKG--LQEL-----NGKPLIQHVIERLA 41 (193)
T ss_pred CCceEEEEcCCCcccCC-CCCCc--eeEE-----CCEEHHHHHHHHHh
Confidence 35778999999999996 26888 8776 59999999998775
No 78
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.20 E-value=0.028 Score=60.42 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=32.9
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
.++.|+||||+|+|||. +|. ++++ .|+++++..++++..
T Consensus 174 ~i~~iILAGG~SsRmG~--~K~--ll~~-----~Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMGS--DKA--LLSY-----HESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCCC--CcE--EEEE-----CCccHHHHHHHHHHh
Confidence 46789999999999994 888 8776 599999999887754
No 79
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.058 Score=57.94 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=57.9
Q ss_pred eEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 290 GEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 290 a~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
-.|+||||.||||-- +-||- ++||+ ||.+++.+++.+.+ +| .--++|.+.. ..+.+
T Consensus 3 kavILagG~GtRLrPlT~~~PKP--llpI~-----gkPii~~~l~~L~~--------~G---v~eivi~~~y---~~~~i 61 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKP--LLPIA-----GKPLIEYVLEALAA--------AG---VEEIVLVVGY---LGEQI 61 (358)
T ss_pred eEEEEeCCccccccccccCCCcc--cceeC-----CccHHHHHHHHHHH--------CC---CcEEEEEecc---chHHH
Confidence 358999999999754 78998 99985 99999999998755 24 2345666666 78999
Q ss_pred HHHHHHcCCCCCCCCceEEEecCc
Q 008010 367 TSLCERLRWFGRGQSSFQLFEQPL 390 (581)
Q Consensus 367 ~~flekn~yFGl~~~qV~~F~Q~~ 390 (581)
+++|.+...+|. +|.+..|..
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~ 82 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE 82 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC
Confidence 999999866665 455444443
No 80
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.96 E-value=0.024 Score=60.87 Aligned_cols=42 Identities=17% Similarity=0.393 Sum_probs=35.3
Q ss_pred cCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 286 L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+.+++.|+||||+|+||| ..||. ++++ .|+++++..++++..
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~--ll~i-----~Gkpll~~~i~~l~~ 44 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKA--LILL-----GGKPLIERVVDRLRP 44 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCc--eeEE-----CCeeHHHHHHHHHHh
Confidence 346888999999999996 37888 8886 499999999998864
No 81
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=94.92 E-value=0.045 Score=55.18 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=47.7
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||.- ..||. ++|++ |+++++..++.+.+. | .-.++|.|.. ..+.+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~--llpv~-----gkpli~~~l~~l~~~--------g---i~~i~iv~~~---~~~~i~ 61 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKE--MLPIV-----DKPVIQYIVEEAVAA--------G---IEDIIIVTGR---GKRAIE 61 (267)
T ss_pred EEEEcCCCCccCCCcccCCCce--eeEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEeCC---chHHHH
Confidence 48999999999974 68998 88874 899999999977652 3 1256788887 677788
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++|..
T Consensus 62 ~~~~~ 66 (267)
T cd02541 62 DHFDR 66 (267)
T ss_pred HHhCC
Confidence 88854
No 82
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=94.76 E-value=0.064 Score=52.66 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=45.4
Q ss_pred EEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 292 IYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 292 VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
|+||||.||||+- ..||. ++|+ .|+++++..++.+... | .-.++|.|.. ..+...+
T Consensus 2 iIlAaG~g~Rl~~lt~~~pK~--l~~~-----~g~~li~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~~ 60 (229)
T cd02523 2 IILAAGRGSRLRPLTEDRPKC--LLEI-----NGKPLLERQIETLKEA--------G---IDDIVIVTGY---KKEQIEE 60 (229)
T ss_pred EEEeccCccccchhhCCCCce--eeeE-----CCEEHHHHHHHHHHHC--------C---CceEEEEecc---CHHHHHH
Confidence 7899999999975 46998 8887 4899999988877652 3 1246777776 5677777
Q ss_pred HHHH
Q 008010 369 LCER 372 (581)
Q Consensus 369 flek 372 (581)
++.+
T Consensus 61 ~~~~ 64 (229)
T cd02523 61 LLKK 64 (229)
T ss_pred HHhc
Confidence 7764
No 83
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.63 E-value=0.051 Score=59.35 Aligned_cols=63 Identities=10% Similarity=0.135 Sum_probs=47.5
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+...||- ++|+ .|+++++..++++.+. | .-.++|.++. ..+..+
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~--l~~i-----~gkpli~~~i~~l~~~--------g---i~~i~vv~~~---~~~~i~ 63 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKV--LHTL-----AGKPMVQHVIDAANEL--------G---AQHVHLVYGH---GGDLLK 63 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChh--ccee-----CChhHHHHHHHHHHhc--------C---CCcEEEEECC---CHHHHH
Confidence 4677999999999999888998 8887 4999999998877442 3 2256677776 455666
Q ss_pred HHHH
Q 008010 368 SLCE 371 (581)
Q Consensus 368 ~fle 371 (581)
+++.
T Consensus 64 ~~~~ 67 (456)
T PRK09451 64 QTLA 67 (456)
T ss_pred Hhhc
Confidence 6654
No 84
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.61 E-value=0.076 Score=52.37 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=48.2
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.|+||+- ..||. ++|++ |+++++..++.+.+. | .--++|++.. ..+...
T Consensus 3 avIlagg~g~rl~plt~~~pK~--llpv~-----g~pli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~~~ 61 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKA--LLPVA-----NVPLIDYTLEWLEKA--------G---VEEVFVVCCE---HSQAII 61 (216)
T ss_pred EEEEeCCCccccCccccCCCcc--cceEC-----CEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHHHHH
Confidence 37799999999964 78999 98874 899999988876551 3 1247788887 567777
Q ss_pred HHHHHcCC
Q 008010 368 SLCERLRW 375 (581)
Q Consensus 368 ~flekn~y 375 (581)
+++.+..+
T Consensus 62 ~~~~~~~~ 69 (216)
T cd02507 62 EHLLKSKW 69 (216)
T ss_pred HHHHhccc
Confidence 78776543
No 85
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=94.58 E-value=0.031 Score=59.98 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=32.8
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
.+..|+||||+|+||| .+|. ++++ .|+++++..++++..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKa--LL~~-----~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKA--LLNY-----QGQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcc--ccee-----CCccHHHHHHHHHHh
Confidence 5667999999999999 5888 8775 599999998877654
No 86
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=94.31 E-value=0.036 Score=60.15 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=37.0
Q ss_pred CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHH
Q 008010 287 PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~l 336 (581)
.+++.|+||||.|+|||...||- .+++ .|+++++..++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKq--ll~l-----~GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQ--WLRI-----GGKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCee--EEEE-----CCeeHHHHHHHHHhcC
Confidence 45788999999999999889998 8887 4999999998887653
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=94.23 E-value=0.1 Score=53.20 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=48.5
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.+..|++|+|.|||||...||= -+++ .|+++|+.-++.++... ..=.++|.++. +-+....
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq--~l~l-----~g~pll~~tl~~f~~~~----------~i~~Ivvv~~~--~~~~~~~ 64 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQ--YLEL-----GGRPLLEHTLEAFLESP----------AIDEIVVVVSP--EDDPYFE 64 (230)
T ss_pred eEEEEEEcCccccccCCCCCce--EEEE-----CCEEehHHHHHHHHhCc----------CCCeEEEEECh--hhhHHHH
Confidence 4677999999999999999998 7776 59999999888776642 12245666666 3556666
Q ss_pred HHHH
Q 008010 368 SLCE 371 (581)
Q Consensus 368 ~fle 371 (581)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 6554
No 88
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.20 E-value=0.067 Score=58.18 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=46.1
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+..|+||||.||||+...||. ++|++ |+++++..++++... | .-.++|.++. ..+...+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~--ll~i~-----Gkpli~~~l~~l~~~--------g---i~~iivvv~~---~~~~i~~ 61 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKV--LHKVC-----GKPMVEHVVDSVKKA--------G---IDKIVTVVGH---GAEEVKE 61 (458)
T ss_pred ceEEEEeCCCCcccCCCCChh--hCEeC-----CccHHHHHHHHHHhC--------C---CCeEEEEeCC---CHHHHHH
Confidence 456899999999999888999 98874 899999999987542 3 1245666665 4566665
Q ss_pred HHH
Q 008010 369 LCE 371 (581)
Q Consensus 369 fle 371 (581)
++.
T Consensus 62 ~~~ 64 (458)
T PRK14354 62 VLG 64 (458)
T ss_pred Hhc
Confidence 543
No 89
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.76 E-value=0.045 Score=53.73 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=31.0
Q ss_pred EEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 292 IYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 292 VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
|+||||.||||+ ..-||. ++|+ .|+++++..++.+..
T Consensus 2 iIlAaG~g~Rl~plt~~~pK~--ll~i-----~g~pli~~~l~~l~~ 41 (231)
T cd04183 2 IIPMAGLGSRFKKAGYTYPKP--LIEV-----DGKPMIEWVIESLAK 41 (231)
T ss_pred EEECCcCCccccccCCCCCce--eeEE-----CCEEHHHHHHHhhhc
Confidence 789999999995 378998 8887 489999998887754
No 90
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=93.26 E-value=0.14 Score=53.73 Aligned_cols=61 Identities=21% Similarity=0.379 Sum_probs=48.2
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|++|||.||||.- ..||- ++|++ |+++++..++.+.+. | .--++|.+.. ..+.+.
T Consensus 11 aiIlaaG~g~Rl~~~t~~~pK~--l~pv~-----g~pii~~~l~~l~~~--------g---i~~i~vv~~~---~~~~i~ 69 (302)
T PRK13389 11 AVIPVAGLGTRMLPATKAIPKE--MLPLV-----DKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKNSIE 69 (302)
T ss_pred EEEECCcCCccCCCccCCCCce--eeEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHHHHH
Confidence 48899999999964 68998 88874 899999999887662 3 2346777776 678899
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
++|..
T Consensus 70 ~~~~~ 74 (302)
T PRK13389 70 NHFDT 74 (302)
T ss_pred HHHcc
Confidence 99964
No 91
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=92.76 E-value=0.34 Score=48.92 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=52.9
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHH-----------HHH--HHhcCCcccceEEEecC
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQARE-----------FLY--FKLYGKQCITPVAIMTS 357 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq-----------~La--~~~~g~~~~IPl~IMTS 357 (581)
.|++|+|.||||+ +|- .+++ .|+++++..++++++.. ... .+.+| +. ++||+
T Consensus 2 ~iIpA~g~s~R~~---~K~--L~~l-----~GkPli~~~le~~~~~~~d~VvVvt~~~~i~~~~~~~g----~~-~v~~~ 66 (238)
T TIGR00466 2 VIIPARLASSRLP---GKP--LEDI-----FGKPMIVHVAENANESGADRCIVATDDESVAQTCQKFG----IE-VCMTS 66 (238)
T ss_pred EEEecCCCCCCCC---CCe--eccc-----CCcCHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHcC----CE-EEEeC
Confidence 4889999999995 787 8776 49999999999876431 000 01122 33 45776
Q ss_pred CCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecC
Q 008010 358 SAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAE 397 (581)
Q Consensus 358 ~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~ 397 (581)
.. ...-|....+-.+...+...++.+.-|+-.|.++.+
T Consensus 67 ~~--~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~ 104 (238)
T TIGR00466 67 KH--HNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKE 104 (238)
T ss_pred CC--CCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHH
Confidence 41 222222222221111122346778888888888754
No 92
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=91.62 E-value=7.8 Score=42.01 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=109.0
Q ss_pred CceeEEEecCCCcCCC---CCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 287 PELGEIYPLGGSADRL---GLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 287 ~kia~VlLAGGqGTRL---G~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
+.++.|+|-||-|||| -++-||. ..|+| ++.+.+.+++.+... | .--+|+.|+. +.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKP--lVpfg-----n~pmI~hqieal~ns--------G---i~~I~la~~y---~s 66 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKP--LVPFG-----NKPMILHQIEALINS--------G---ITKIVLATQY---NS 66 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCc--ccccC-----cchhhHHHHHHHHhC--------C---CcEEEEEEec---Cc
Confidence 4678899999999996 5688888 77764 788888888866552 3 4578999998 44
Q ss_pred H-HHHHHHHHc-CCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEE
Q 008010 364 E-RITSLCERL-RWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGAT 441 (581)
Q Consensus 364 e-~T~~flekn-~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~ 441 (581)
+ --+.+.+.+ ..||. .|. |.|.+- |-|--|--.|.++ .|....+. -++
T Consensus 67 ~sl~~~~~k~y~~~lgV---ei~-~s~ete---------------------plgtaGpl~laR~--~L~~~~~~---~ff 116 (371)
T KOG1322|consen 67 ESLNRHLSKAYGKELGV---EIL-ASTETE---------------------PLGTAGPLALARD--FLWVFEDA---PFF 116 (371)
T ss_pred HHHHHHHHHHhhhccce---EEE-EEeccC---------------------CCcccchHHHHHH--HhhhcCCC---cEE
Confidence 4 666777776 24442 222 333333 3333333333322 12222111 455
Q ss_pred EEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCC
Q 008010 442 VRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (581)
Q Consensus 442 v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~ 521 (581)
|-+.| .+++.| +..|+-++..++++....+ . +..++-+-|+++-. .+ + =.++.++|=|++ ....
T Consensus 117 VLnsD-vi~~~p--~~~~vqfH~~~gae~TI~~-t-~vdepSkyGvv~~d--~~-~----grV~~F~EKPkd-~vsn--- 180 (371)
T KOG1322|consen 117 VLNSD-VICRMP--YKEMVQFHRAHGAEITIVV-T-KVDEPSKYGVVVID--ED-T----GRVIRFVEKPKD-LVSN--- 180 (371)
T ss_pred EecCC-eeecCC--HHHHHHHHHhcCCceEEEE-E-eccCccccceEEEe--cC-C----CceeEehhCchh-hhhc---
Confidence 55555 445553 3467888888888776654 2 33344555554432 21 1 245666666663 1100
Q ss_pred CCCcccccCCccceeEEeHHHHHHhhc
Q 008010 522 SNGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.-|--+.+|+-+-|.++.-
T Consensus 181 --------kinaGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 181 --------KINAGIYILNPEVLDRILL 199 (371)
T ss_pred --------cccceEEEECHHHHhHhhh
Confidence 0144567888999888763
No 93
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=90.18 E-value=0.63 Score=46.05 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=41.5
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fl 370 (581)
.|+||||.++||| +|. ++++ .|+++++..++.+.... ..-.++|-|+.. .-++...+++
T Consensus 2 aiIlA~G~S~R~~---~K~--ll~l-----~Gkpli~~~i~~l~~~~----------~~~~ivVv~~~~-~~~~~i~~~~ 60 (233)
T cd02518 2 AIIQARMGSTRLP---GKV--LKPL-----GGKPLLEHLLDRLKRSK----------LIDEIVIATSTN-EEDDPLEALA 60 (233)
T ss_pred EEEeeCCCCCCCC---CCc--cccc-----CCccHHHHHHHHHHhCC----------CCCeEEEECCCC-cccHHHHHHH
Confidence 3789999999996 487 7776 59999999998776521 112466667652 1125666666
Q ss_pred HH
Q 008010 371 ER 372 (581)
Q Consensus 371 ek 372 (581)
..
T Consensus 61 ~~ 62 (233)
T cd02518 61 KK 62 (233)
T ss_pred HH
Confidence 53
No 94
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=89.88 E-value=0.41 Score=53.73 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=45.1
Q ss_pred eeEEEecCCCcCCCCC----CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 289 LGEIYPLGGSADRLGL----VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~----~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
+-.|+||||.||||-- ..||- ++|++ .++|+||..++|+..+ + +.=++ |.|+. .-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq--~l~l~----~~~sllq~t~~r~~~~--------~--~~~~i-ivt~~--~~~~ 66 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQ--FLCLK----GDLTMLQTTICRLNGV--------E--CESPV-VICNE--QHRF 66 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcc--eeECC----CCCCHHHHHHHHHHhC--------C--CCCcE-EEeCH--HHHH
Confidence 4458999999999952 35888 88874 4689999999987664 2 23345 55877 2445
Q ss_pred HHHHHHHH
Q 008010 365 RITSLCER 372 (581)
Q Consensus 365 ~T~~flek 372 (581)
.+++-+.+
T Consensus 67 ~v~~ql~~ 74 (478)
T PRK15460 67 IVAEQLRQ 74 (478)
T ss_pred HHHHHHHh
Confidence 55556654
No 95
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.34 E-value=0.82 Score=48.94 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=45.0
Q ss_pred eEEEecCCCcCCCCC----CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 290 GEIYPLGGSADRLGL----VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 290 a~VlLAGGqGTRLG~----~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
.-|+||||.||||== ..||- .+.+. .++|+||..++|+..+. + .-.+++.|+. +-...
T Consensus 3 ~pvIlaGG~GsRLWPLSR~~~PKQ--Fl~L~----~~~Sllq~T~~R~~~l~-------~---~~~~~vVtne--~~~f~ 64 (333)
T COG0836 3 IPVILAGGSGSRLWPLSRKDYPKQ--FLKLF----GDLSLLQQTVKRLAFLG-------D---IEEPLVVTNE--KYRFI 64 (333)
T ss_pred eeEEEeCCCccccCCcCcccCCcc--ceeeC----CCCcHHHHHHHHHhhcC-------C---ccCeEEEeCH--HHHHH
Confidence 348999999999932 67887 76642 48999999999998863 1 2355666776 24444
Q ss_pred HHHHHHH
Q 008010 366 ITSLCER 372 (581)
Q Consensus 366 T~~flek 372 (581)
+++=|.+
T Consensus 65 v~eql~e 71 (333)
T COG0836 65 VKEQLPE 71 (333)
T ss_pred HHHHHhh
Confidence 5555544
No 96
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=85.10 E-value=13 Score=41.11 Aligned_cols=199 Identities=15% Similarity=0.181 Sum_probs=109.4
Q ss_pred CceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCc-cHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCc
Q 008010 287 PELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRT-LLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNN 362 (581)
Q Consensus 287 ~kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkS-llql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~T 362 (581)
+++-.++||||+|+||+- .-+|- .+|.| ||. +.++-+-... ..| .--+++.|=. ..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp--AVpFg-----GkYRiIDF~LSN~v--------NSG---i~~I~VltQy--~~ 63 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP--AVPFG-----GKYRIIDFALSNCV--------NSG---IRRIGVLTQY--KS 63 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc--ccccC-----ceeEEEeEEccccc--------ccC---CCeEEEEecc--ch
Confidence 456678999999999976 45555 55554 321 2222221111 112 2356777777 46
Q ss_pred hHHHHHHHHHcCCCCCC--CCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEE
Q 008010 363 HERITSLCERLRWFGRG--QSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGA 440 (581)
Q Consensus 363 he~T~~flekn~yFGl~--~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi 440 (581)
| .-.+.+..-..|+++ .+.|+++...+- .++ -.|.-.+-= |.+++ +..+.+-+.+|+
T Consensus 64 ~-SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~-----~~~---------~~wy~Gtad----ai~Qn--l~~i~~~~~eyv 122 (393)
T COG0448 64 H-SLNDHIGRGWPWDLDRKNGGVFILPAQQR-----EGG---------ERWYEGTAD----AIYQN--LLIIRRSDPEYV 122 (393)
T ss_pred h-HHHHHhhCCCccccccccCcEEEeCchhc-----cCC---------CcceeccHH----HHHHh--HHHHHhcCCCEE
Confidence 6 555566665556554 334444432211 101 112211111 22222 445567899999
Q ss_pred EEEeCCCcccccchhhHHHhhhhhhcCCceeEEE--EeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCC
Q 008010 441 TVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS--CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG 518 (581)
Q Consensus 441 ~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~--v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~ 518 (581)
.+.+-|=+ .+.|..- ++=.+...++++-..+ |+++. +..-|++- .+.+|+ ++|+.|=|.. +
T Consensus 123 lIlsgDhI-YkmDy~~--ml~~H~~~gadiTv~~~~Vp~~e--as~fGim~--~D~~~~------i~~F~eKp~~----~ 185 (393)
T COG0448 123 LILSGDHI-YKMDYSD--MLDFHIESGADVTVAVKEVPREE--ASRFGVMN--VDENGR------IIEFVEKPAD----G 185 (393)
T ss_pred EEecCCEE-EecCHHH--HHHHHHHcCCCEEEEEEECChHh--hhhcCceE--ECCCCC------EEeeeeccCc----C
Confidence 99999865 4566663 5667788888877775 45442 22344532 245666 4566665552 1
Q ss_pred CCCCCCcccccCCccceeEEeHHHHHHhhcc
Q 008010 519 PFSSNGLQADFPANTNILYVDLASAELVGSS 549 (581)
Q Consensus 519 ~~~dg~l~S~F~~NiN~l~fsL~~L~~v~~~ 549 (581)
..+.++ +...|.+|+-+.|.+++.+
T Consensus 186 -~~~~~l-----aSMgiYIf~~~~L~~~L~~ 210 (393)
T COG0448 186 -PPSNSL-----ASMGIYIFNTDLLKELLEE 210 (393)
T ss_pred -Ccccce-----eeeeeEEEcHHHHHHHHHH
Confidence 111122 2457889999999999874
No 97
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=83.10 E-value=1.7 Score=45.72 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=41.3
Q ss_pred EEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+.|.|+|||+== .-||- |||| -+|...|+.++...+ .| .--++|.|+. +...+.
T Consensus 7 AViPaAGlGTRfLPATKaiPKE--MLPI-----vdKP~IqYiVeEa~~--------aG---Ie~i~iVTgr---~K~~Ie 65 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKE--MLPI-----VDKPLIQYIVEEAVA--------AG---IEEILIVTGR---GKRAIE 65 (291)
T ss_pred EEEEccCcccccccccccCchh--hccc-----cCchhHHHHHHHHHH--------cC---CCEEEEEecC---CcchHH
Confidence 38999999999822 34444 6555 489999999996554 24 4467888887 444665
Q ss_pred HHHH
Q 008010 368 SLCE 371 (581)
Q Consensus 368 ~fle 371 (581)
++|.
T Consensus 66 DhFD 69 (291)
T COG1210 66 DHFD 69 (291)
T ss_pred HhCc
Confidence 5553
No 98
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=79.95 E-value=1.5 Score=44.25 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred EEEecCCCcCCC---CCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRL---GLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRL---G~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||-|+|||+ -++-||+ .+.| .|+.+.|-|+++++.. | .--+.|.|-- - .+--
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~--LlkV-----~g~plIErqI~~L~e~--------g---I~dI~IVvGY---l-kE~F 60 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKS--LLKV-----NGEPLIERQIEQLREA--------G---IDDITIVVGY---L-KEQF 60 (231)
T ss_pred eEEEecccccccccccccCChH--HHHh-----cCcccHHHHHHHHHHC--------C---CceEEEEeee---h-HHHH
Confidence 488999999995 5689999 8887 5999999999988663 3 2345677765 2 3344
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+||++
T Consensus 61 eYLkd 65 (231)
T COG4750 61 EYLKD 65 (231)
T ss_pred HHHHH
Confidence 56655
No 99
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=76.06 E-value=47 Score=33.28 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=39.1
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fl 370 (581)
.|++|.|.++||+ .|- ..++ .|++|+++.++..++.. +.-.+++ .++ ++++.++.
T Consensus 2 aiIpArG~Skr~~---~Kn--l~~l-----~GkpLi~~ti~~a~~s~----------~~d~IvV-std----~~~i~~~a 56 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKN--IKPF-----CGKPMIAYSIEAALNSG----------LFDKVVV-STD----DEEIAEVA 56 (222)
T ss_pred EEEccCCCCCCCC---Ccc--chhc-----CCcCHHHHHHHHHHhCC----------CCCEEEE-eCC----CHHHHHHH
Confidence 3788999999995 476 6565 59999999999876631 1112333 433 46777777
Q ss_pred HHc
Q 008010 371 ERL 373 (581)
Q Consensus 371 ekn 373 (581)
++.
T Consensus 57 ~~~ 59 (222)
T TIGR03584 57 KSY 59 (222)
T ss_pred HHc
Confidence 753
No 100
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=74.10 E-value=3.8 Score=41.21 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=33.6
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
.++.|+||-|.|+||| .+|- ++|+ +|+++....+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~Kl--Lap~-----~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKL--LAPL-----DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccce--eccc-----CCCcHHHHHHHHHHh
Confidence 6888999999999999 8887 7665 799999999997764
No 101
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=56.81 E-value=11 Score=42.70 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=46.6
Q ss_pred ceEEEecCc---eeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc
Q 008010 382 SFQLFEQPL---VPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA 451 (581)
Q Consensus 382 qV~~F~Q~~---vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak 451 (581)
+|.|=.|.. --+++.+ +.++..+.+++..-|.|||.+. +-|.+..-.-|||=++||+...
T Consensus 235 ~IsfS~Qk~sTDTIAv~~d-N~pFR~~dG~LlFRPgGHGALi---------eNLN~ldaDiIFIKNIDNVvpd 297 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAVDPD-NTPFRNEDGSLLFRPGGHGALI---------ENLNDLDADIIFIKNIDNVVPD 297 (513)
T ss_pred EEEecccCCCCCeeEECCC-CCccCCCCCCEEeCCCcchHHH---------hhhccccCCEEEEeCccccCCc
Confidence 566656653 4567766 8899999999999999999864 4445567788999999999864
No 102
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=56.34 E-value=22 Score=36.75 Aligned_cols=59 Identities=15% Similarity=0.357 Sum_probs=46.2
Q ss_pred CCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCC
Q 008010 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRW 375 (581)
Q Consensus 301 RLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~y 375 (581)
|||++--+|.-++|++ +.++++++++|+++.. +.=-++|-||+. .+++..+.++.++.+
T Consensus 11 RmgStRLpgKvLlpL~-----~~pmI~~~lervrks~----------~~d~ivvATS~~-~~d~~l~~~~~~~G~ 69 (241)
T COG1861 11 RMGSTRLPGKVLLPLG-----GEPMIEYQLERVRKSK----------DLDKIVVATSDK-EEDDALEEVCRSHGF 69 (241)
T ss_pred cccCccCCcchhhhcC-----CCchHHHHHHHHhccc----------cccceEEEecCC-cchhHHHHHHHHcCe
Confidence 8888777776577775 8899999999988743 223578999996 588889999999864
No 103
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=2.8e+02 Score=30.32 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=90.9
Q ss_pred EEEecCC--CcCC---CCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 291 EIYPLGG--SADR---LGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 291 ~VlLAGG--qGTR---LG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
.|+|.|| -||| |.++-||- .+||+ |....+..+....++..|+ =++..-++ -.+.
T Consensus 5 AVIlVGGP~kGTRFRPLSf~vPKP--Lfpia-----G~pmI~Hhi~ac~qi~~l~-----------eI~LvGFy--~e~~ 64 (407)
T KOG1460|consen 5 AVILVGGPQKGTRFRPLSFNVPKP--LFPIA-----GVPMIHHHISACKQISGLA-----------EILLVGFY--EERV 64 (407)
T ss_pred EEEEecCCCCCccccccccCCCCC--ccccC-----CcchhhhhHHHHhcccchh-----------heeEEecc--cchH
Confidence 3555566 4999 78899999 99986 7777777777665554332 12333443 3555
Q ss_pred HHHHHHHcC-CCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 008010 366 ITSLCERLR-WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (581)
Q Consensus 366 T~~flekn~-yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (581)
-..|+.+-. .|- +| -++.-+-+|.|-||-.--. -|+.++---..+||.+
T Consensus 65 f~~fis~~~~e~~-------------~p------------vrYL~E~~plGtaGgLyhF-----rdqIl~g~ps~vFvln 114 (407)
T KOG1460|consen 65 FTDFISAIQQEFK-------------VP------------VRYLREDNPLGTAGGLYHF-----RDQILAGSPSAVFVLN 114 (407)
T ss_pred HHHHHHHHHhhcc-------------cc------------hhhhccCCCCCcccceeeh-----hhHHhcCCCceEEEEe
Confidence 666666632 221 12 1233345788876643222 3456666778999999
Q ss_pred CCCcccccchhhHHHhhhhhhcCCceeEEEEec-cCCCcccceEEEEeecCCCccccceEEEEecccCC
Q 008010 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKR-SSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDK 512 (581)
Q Consensus 445 vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~R-K~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~ 512 (581)
.|=+..+-=+. ++..+ +....++...+.. .+..+..-|+||+. |+-. -++-|.|=|.
T Consensus 115 aDVCcsfPl~~---ml~ah-r~~g~~~tll~tkvs~e~asnfG~lV~d--P~t~-----evlHYveKPs 172 (407)
T KOG1460|consen 115 ADVCCSFPLQD---MLEAH-RRYGGIGTLLVTKVSREQASNFGCLVED--PSTG-----EVLHYVEKPS 172 (407)
T ss_pred cceecCCcHHH---HHHHH-hhcCCceEEEEEEecHhHhhccCeeeec--CCcC-----ceEEeecCcc
Confidence 88776662122 33344 3333444443221 22233457888873 4322 4577877665
No 104
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=37.47 E-value=30 Score=33.54 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHH--------------HHHhcCCcccceEEEecCCCCCchHHH
Q 008010 301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFL--------------YFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 301 RLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~L--------------a~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
|+|+++-++.-+.++ .||+++++.++++++.+.. ..+.+| +. ++|+++. -...+
T Consensus 7 R~gS~rlp~Knl~~l-----~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g----~~-v~~~~~~--~~~~~ 74 (217)
T PF02348_consen 7 RGGSKRLPGKNLKPL-----GGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYG----AK-VIFRRGS--LADDT 74 (217)
T ss_dssp -SSSSSSTTGGGSEE-----TTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTT----SE-EEE--TT--SSSHH
T ss_pred CCCCCCCCcchhhHh-----CCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcC----Ce-eEEcChh--hcCCc
Confidence 778877777545554 6999999999999875311 112344 22 3666663 33444
Q ss_pred HHHHHHcCCCCCCCCceEEEecCceeeEecC
Q 008010 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAE 397 (581)
Q Consensus 367 ~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~ 397 (581)
..+.+--.++..+.+.+.+..|+..|.++.+
T Consensus 75 ~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~ 105 (217)
T PF02348_consen 75 DRFIEAIKHFLADDEDIVVRLQGDSPLLDPT 105 (217)
T ss_dssp HHHHHHHHHHTCSTTSEEEEESTTETT--HH
T ss_pred ccHHHHHHHhhhhHHhhccccCCeeeECCHH
Confidence 4444444444443445888899999998865
No 105
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.89 E-value=27 Score=40.44 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH--------HHHHHHH
Q 008010 300 DRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE--------RITSLCE 371 (581)
Q Consensus 300 TRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The--------~T~~fle 371 (581)
||||-.-||| .|=+| .|-+|||+| |+...|. ..+|++-|.-.. =++ +++++|.
T Consensus 330 trLGGKLPKG--VLLvG-PPGTGKTlL-------------ARAvAGE-A~VPFF~~sGSE--FdEm~VGvGArRVRdLF~ 390 (752)
T KOG0734|consen 330 TRLGGKLPKG--VLLVG-PPGTGKTLL-------------ARAVAGE-AGVPFFYASGSE--FDEMFVGVGARRVRDLFA 390 (752)
T ss_pred hhccCcCCCc--eEEeC-CCCCchhHH-------------HHHhhcc-cCCCeEeccccc--hhhhhhcccHHHHHHHHH
Confidence 8999999999 88888 788999987 2334464 589999998662 333 3666776
Q ss_pred HcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHH-cCceEEEEEeCCCccc
Q 008010 372 RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD-NGRKGATVRQVSNVVA 450 (581)
Q Consensus 372 kn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~-~Gikyi~v~~vDN~La 450 (581)
.-. ..-||+-+-|--=.+..+ +. .-++| |.----+.+|-+|-- .--+-|.|..-+|---
T Consensus 391 aAk--------------~~APcIIFIDEiDavG~k-R~--~~~~~---y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 391 AAK--------------ARAPCIIFIDEIDAVGGK-RN--PSDQH---YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred HHH--------------hcCCeEEEEechhhhccc-CC--ccHHH---HHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 643 246776554210001110 00 11112 221111223333310 1224688888888877
Q ss_pred ccchhh
Q 008010 451 ATDLTL 456 (581)
Q Consensus 451 k~DP~~ 456 (581)
.+||.+
T Consensus 451 ~LD~AL 456 (752)
T KOG0734|consen 451 ALDKAL 456 (752)
T ss_pred hhhHHh
Confidence 788874
No 106
>PLN03014 carbonic anhydrase
Probab=24.29 E-value=1.1e+02 Score=33.62 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 008010 80 FHQEISRLKKLRSR 93 (581)
Q Consensus 80 ~~~~~~~l~~~~~~ 93 (581)
++..|++|+.|++.
T Consensus 83 ~~~~~~~~~~~~~~ 96 (347)
T PLN03014 83 YDEAIEALKKLLIE 96 (347)
T ss_pred HHHHHHHHHhhccc
Confidence 66677777777643
No 107
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=22.81 E-value=51 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.9
Q ss_pred cCC--ccceeEEeHHHHH
Q 008010 529 FPA--NTNILYVDLASAE 544 (581)
Q Consensus 529 F~~--NiN~l~fsL~~L~ 544 (581)
||. |||.|||+-.|..
T Consensus 81 fPI~CNidLHYfSSSfFS 98 (276)
T PF00845_consen 81 FPIRCNIDLHYFSSSFFS 98 (276)
T ss_pred eeeeeeeeeEEeeeccee
Confidence 886 9999999999873
No 108
>COG4898 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.37 E-value=95 Score=28.28 Aligned_cols=29 Identities=34% Similarity=0.372 Sum_probs=24.3
Q ss_pred CccHHHHHHHHHHHHHHHhhccchhhhhh
Q 008010 77 DFNFHQEISRLKKLRSRLAVSQSLSHKLS 105 (581)
Q Consensus 77 ~~~~~~~~~~l~~~~~~l~~~~~~~~k~~ 105 (581)
+-.+-+||++|..|++.|++-++.++-++
T Consensus 86 ~D~lMqeIRyLDKLvDeLAKGK~m~kiLr 114 (115)
T COG4898 86 DDPLMQEIRYLDKLVDELAKGKTMQKILR 114 (115)
T ss_pred ccHHHHHHHHHHHHHHHHHccchHHHHhh
Confidence 34589999999999999999998776543
Done!