Query 008010
Match_columns 581
No_of_seqs 240 out of 668
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 8E-73 2.7E-77 623.8 28.0 352 134-566 7-389 (630)
2 2yqc_A UDP-N-acetylglucosamine 100.0 2.3E-71 7.8E-76 602.9 24.9 358 135-577 5-381 (486)
3 1jv1_A Glcnac1P uridyltransfer 100.0 3.4E-68 1.2E-72 580.3 28.8 362 134-577 1-369 (505)
4 3r3i_A UTP--glucose-1-phosphat 100.0 1.5E-67 5.3E-72 573.5 18.1 306 195-567 63-380 (528)
5 3oc9_A UDP-N-acetylglucosamine 100.0 5.8E-66 2E-70 548.4 25.8 272 278-577 23-299 (405)
6 3gue_A UTP-glucose-1-phosphate 100.0 4E-64 1.4E-68 543.0 19.0 285 256-573 48-342 (484)
7 2oeg_A UTP-glucose-1-phosphate 100.0 1.2E-54 4.2E-59 473.0 17.1 287 257-573 49-346 (505)
8 2i5k_A UTP--glucose-1-phosphat 100.0 4E-53 1.4E-57 460.0 20.0 328 162-574 11-344 (488)
9 2icy_A Probable UTP-glucose-1- 100.0 8.1E-52 2.8E-56 447.9 16.4 275 256-567 45-325 (469)
10 3st8_A Bifunctional protein GL 98.1 1.5E-05 5E-10 86.0 12.7 190 288-548 12-203 (501)
11 3oam_A 3-deoxy-manno-octuloson 97.6 0.00038 1.3E-08 68.4 12.0 189 288-548 2-197 (252)
12 3tqd_A 3-deoxy-manno-octuloson 97.5 0.0016 5.5E-08 64.9 15.1 190 288-548 9-206 (256)
13 3brk_X Glucose-1-phosphate ade 97.5 0.0013 4.3E-08 69.0 14.9 204 286-548 10-221 (420)
14 4ecm_A Glucose-1-phosphate thy 97.5 0.0011 3.8E-08 65.4 13.6 180 288-546 24-206 (269)
15 3k8d_A 3-deoxy-manno-octuloson 97.3 0.0029 9.9E-08 63.3 14.4 190 288-548 18-213 (264)
16 3juk_A UDP-glucose pyrophospho 97.3 0.003 1E-07 62.3 13.9 64 289-373 3-69 (281)
17 1ezi_A CMP-N-acetylneuraminic 97.3 0.0014 4.6E-08 62.6 10.8 60 288-372 4-63 (228)
18 2waw_A MOBA relate protein; un 97.2 0.00077 2.6E-08 62.2 8.4 105 288-451 5-110 (199)
19 1yp2_A Glucose-1-phosphate ade 97.1 0.0041 1.4E-07 65.6 13.2 145 288-473 20-169 (451)
20 3f1c_A Putative 2-C-methyl-D-e 97.1 0.0019 6.6E-08 63.0 9.7 68 288-374 3-71 (246)
21 1h7e_A 3-deoxy-manno-octuloson 97.0 0.0046 1.6E-07 59.3 11.5 102 288-451 2-103 (245)
22 4fce_A Bifunctional protein GL 96.9 0.0096 3.3E-07 62.3 14.2 64 288-372 8-71 (459)
23 4fcu_A 3-deoxy-manno-octuloson 96.9 0.013 4.4E-07 58.2 14.3 186 290-548 3-198 (253)
24 1qwj_A Cytidine monophospho-N- 96.9 0.0073 2.5E-07 58.0 11.9 107 288-451 3-109 (229)
25 1tzf_A Glucose-1-phosphate cyt 96.7 0.0015 5.1E-08 63.2 5.0 64 289-373 3-69 (259)
26 2wee_A MOBA-related protein; u 96.6 0.0016 5.5E-08 60.1 4.6 105 288-451 5-110 (197)
27 2xwl_A 2-C-methyl-D-erythritol 96.5 0.0014 4.8E-08 61.8 3.6 54 288-358 2-55 (223)
28 2yc3_A 2-C-methyl-D-erythritol 96.4 0.0015 5E-08 62.1 3.2 54 288-358 4-57 (228)
29 1vpa_A 2-C-methyl-D-erythritol 96.4 0.0015 5.2E-08 62.3 3.2 54 288-358 13-66 (234)
30 3q80_A 2-C-methyl-D-erythritol 96.4 0.0029 1E-07 62.0 5.1 65 288-371 7-71 (231)
31 1i52_A 4-diphosphocytidyl-2-C- 96.4 0.0016 5.6E-08 62.4 3.2 54 288-358 7-60 (236)
32 1fxo_A Glucose-1-phosphate thy 96.3 0.0029 9.8E-08 63.9 5.0 70 289-378 3-75 (293)
33 1lvw_A Glucose-1-phosphate thy 96.3 0.0041 1.4E-07 62.9 6.1 70 289-378 4-76 (295)
34 3rsb_A Adenosylcobinamide-phos 96.3 0.0022 7.4E-08 59.7 3.7 62 290-373 2-63 (196)
35 3pnn_A Conserved domain protei 96.3 0.0079 2.7E-07 60.7 8.0 79 288-389 5-83 (303)
36 1vgw_A 4-diphosphocytidyl-2C-m 96.3 0.0019 6.4E-08 61.4 3.2 64 288-372 6-69 (231)
37 1hm9_A GLMU, UDP-N-acetylgluco 96.3 0.052 1.8E-06 57.1 14.5 59 291-370 14-72 (468)
38 1mc3_A Glucose-1-phosphate thy 96.3 0.0033 1.1E-07 63.6 5.0 70 289-378 4-76 (296)
39 3d5n_A Q97W15_sulso; NESG, SSR 96.2 0.0026 9E-08 59.9 3.9 47 289-358 3-49 (197)
40 2vsh_A TARI, 2-C-methyl-D-eryt 96.1 0.0045 1.5E-07 58.7 4.9 66 289-373 3-69 (236)
41 1e5k_A Molybdopterin-guanine d 96.1 0.0034 1.2E-07 59.5 3.7 40 288-335 6-45 (201)
42 2px7_A 2-C-methyl-D-erythritol 96.0 0.0034 1.2E-07 60.8 3.3 37 288-332 25-61 (236)
43 2qh5_A PMI, ALGA, mannose-6-ph 95.9 0.0076 2.6E-07 60.8 5.8 69 288-378 4-76 (308)
44 2v0h_A Bifunctional protein GL 95.9 0.0073 2.5E-07 63.2 5.5 64 288-372 5-68 (456)
45 3ngw_A Molybdopterin-guanine d 95.7 0.0044 1.5E-07 59.7 3.0 46 290-358 2-47 (208)
46 2y6p_A 3-deoxy-manno-octuloson 95.7 0.0046 1.6E-07 58.8 3.0 99 288-451 2-100 (234)
47 1jyk_A LICC protein, CTP:phosp 95.5 0.0065 2.2E-07 59.7 3.0 63 288-371 25-90 (254)
48 2e3d_A UTP--glucose-1-phosphat 95.3 0.014 4.8E-07 58.2 4.8 64 288-372 8-74 (302)
49 2xme_A CTP-inositol-1-phosphat 95.3 0.007 2.4E-07 57.9 2.4 42 286-335 16-57 (232)
50 2e8b_A Probable molybdopterin- 95.2 0.003 1E-07 59.7 -0.5 50 288-358 14-63 (201)
51 4evw_A Nucleoside-diphosphate- 95.1 0.0044 1.5E-07 61.1 0.7 61 291-372 2-65 (255)
52 2ux8_A Glucose-1-phosphate uri 95.1 0.016 5.4E-07 57.8 4.4 64 288-372 14-80 (297)
53 2x65_A Mannose-1-phosphate gua 94.8 0.016 5.4E-07 59.7 3.8 63 290-371 3-70 (336)
54 1vic_A 3-deoxy-manno-octuloson 94.8 0.015 5.2E-07 56.8 3.4 103 289-451 3-105 (262)
55 2pa4_A UTP-glucose-1-phosphate 94.7 0.017 6E-07 58.6 3.8 62 289-371 13-77 (323)
56 1w55_A ISPD/ISPF bifunctional 94.2 0.025 8.6E-07 59.5 3.6 41 288-335 3-43 (371)
57 2cu2_A Putative mannose-1-phos 93.5 0.039 1.3E-06 56.8 3.5 40 289-335 3-47 (337)
58 2ggo_A 401AA long hypothetical 92.8 0.049 1.7E-06 56.1 2.9 60 290-373 2-64 (401)
59 2dpw_A Hypothetical protein TT 92.2 0.077 2.6E-06 51.0 3.4 39 289-335 3-44 (232)
60 3gx8_A Monothiol glutaredoxin- 22.6 1.2E+02 0.0041 26.1 5.4 48 362-434 58-105 (121)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=8e-73 Score=623.83 Aligned_cols=352 Identities=21% Similarity=0.216 Sum_probs=292.9
Q ss_pred ccHHHHHHHHHH--cCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHH
Q 008010 134 LDQLFLIKCVIA--AGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLA 211 (581)
Q Consensus 134 ~~~~~l~~~L~~--~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~ 211 (581)
++...|+++|.+ +||+|||++ |++. |+| ++++|++|++||.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~---w~~~---------------------------------l~~-~~~e~~~L~~qL~ 49 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEG---WPET---------------------------------VDE-CNERQIALLTDLY 49 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTT---CCSS---------------------------------GGG-CCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhccCCchhhhhh---cccc---------------------------------cCC-CHHHHHHHHHHHH
Confidence 467889999997 999999999 9882 442 2459999999999
Q ss_pred HhhccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCC---CCcccccCchHHHHHHHHHHhccC
Q 008010 212 EIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVP---SGLDLSQNTEYAAQAALWGIEGLP 287 (581)
Q Consensus 212 ~id~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP---~g~~ls~~~~~~~~~~~~G~e~L~ 287 (581)
.+|..| +|||.+|+++|++++. +.+ +. ++++.+ ++| .+..++...+.....+++|.+.|+
T Consensus 50 ~~d~~~--~~gl~~~~~~a~~~l~-~~~---~~----------~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~ 113 (630)
T 3ogz_A 50 MFSNMY--PGGVAQYIRNGHELLA-RES---EE----------VDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC 113 (630)
T ss_dssp HGGGTS--TTHHHHHHHHHHHHHH-HHT---SC----------CCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG
T ss_pred hhChhh--hhhHHHHHHHHHHHhh-ccc---cC----------CcccccccCCCCCccccccCCHHHHHHHHHHhHHHHh
Confidence 999988 6999999999999993 321 11 234444 344 355555555556667789999999
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++|+|+||||||||||+++||+ +|||+ +| +++||||++++||++ .+| +.||||||||+ +||++|+
T Consensus 114 kvavvllaGGlGTRLG~~~pK~--~lpv~-~~-s~ks~lql~~e~i~~-------~~g--~~iPl~IMTS~--~T~~~T~ 178 (630)
T 3ogz_A 114 KTVFVLVAGGLGERLGYSSIKV--SLPVE-TA-TNTTYLAYYLRWAQR-------VGG--KEVPFVIMTSD--DTHDRTL 178 (630)
T ss_dssp GEEEEEECCCEEGGGTEEEEGG--GSBSC-TT-TCCBHHHHHHHHHHH-------HHC--TTCCEEEEECT--TTHHHHH
T ss_pred hceEEEecCCcccccCCCCCcc--cceec-CC-CCCcHHHHHHHHHHH-------HhC--CCCcEEEEecc--cchHHHH
Confidence 9999999999999999999999 99998 45 499999999999993 346 79999999999 6999999
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcC------------------ch
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IF 429 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sG------------------lL 429 (581)
+||++ ||++++||+||+|+++||+++++|+|+++++++++|+|+||||||.+|+++| +|
T Consensus 179 ~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lL 255 (630)
T 3ogz_A 179 QLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLV 255 (630)
T ss_dssp HHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHH
T ss_pred HHHHH---hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHH
Confidence 99999 9999999999999999999877799999999999999999999999999999 99
Q ss_pred HHHHHcCceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEec
Q 008010 430 KWFHDNGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYT 508 (581)
Q Consensus 430 d~l~~~Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYs 508 (581)
++|+++|+|||||+||||+|++ +||. |+|+++..+.++++++|+| .+.|.+|++|..++.||+. .+++||||+
T Consensus 256 d~l~~~Gieyi~v~~vDN~L~~~~DP~---~lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYs 329 (630)
T 3ogz_A 256 NDWLAAGYESIVFIQDTNAGATITIPI---SLALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYN 329 (630)
T ss_dssp HHHHHTTCCEEEEECTTBTTHHHHHHH---HHHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHH
T ss_pred HHHHHcCCEEEEEEccCCccccccCHH---HhHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCce-eeeeEEEec
Confidence 9999999999999999999998 9998 4899999999999997665 3566677777655678981 145889999
Q ss_pred ccCCCCCCCCCCC------CCCcccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCc
Q 008010 509 EFDKFGITRGPFS------SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPI 566 (581)
Q Consensus 509 El~~~~~~~~~~~------dg~l~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkI 566 (581)
||++. +++.+++ +.+.+++||+|||||||+|+++.+.+.. ....||.++ +.|.+
T Consensus 330 ei~~~-~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v--NpK~~ 389 (630)
T 3ogz_A 330 VFAEV-SRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE-SHGIVPEFI--NPKYS 389 (630)
T ss_dssp HHHHH-HHHC------------CCCSSCEEEEEEEEEHHHHHHHHHH-HTTCCCCEE--CCCBS
T ss_pred cCCHh-HhhccCCCccccccccccccccccceeeeEEHHHHHHHHHh-ccCccceec--CCccc
Confidence 99984 5443332 3345688999999999999988877764 457899888 66644
No 2
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=2.3e-71 Score=602.91 Aligned_cols=358 Identities=21% Similarity=0.281 Sum_probs=304.2
Q ss_pred cHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHh-
Q 008010 135 DQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI- 213 (581)
Q Consensus 135 ~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~i- 213 (581)
++..|+++|.++||+|||.+ |++ |+++ +|++|++||..+
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---ek~~l~~ql~~~~ 44 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQY---YDS----------------------------------LTID---QQQEFIDQLSTIE 44 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTT---GGG----------------------------------SCHH---HHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHcCcHHHhhh---hcc----------------------------------CCHH---HHHHHHHHHHhCc
Confidence 57889999999999999999 998 7664 999999999999
Q ss_pred hccccCCCchHHHHHHHHHHHHhchhcccccccccccccccccccc-c-cCCCCcccccCc---hHHHHHHHHHHhccC-
Q 008010 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLE-I-HVPSGLDLSQNT---EYAAQAALWGIEGLP- 287 (581)
Q Consensus 214 d~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~-~-~vP~g~~ls~~~---~~~~~~~~~G~e~L~- 287 (581)
|. .++..|+++++. .++. + .+++ + |+|++...++.+ ......+++|.+.|+
T Consensus 45 d~-----~~l~~~~~~~~~---~~~~---~------------~~~~~i~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~ 101 (486)
T 2yqc_A 45 EP-----AKLISTVEQAIQ---FSQT---N------------STSRNFTQLPNEQTASTLDLSKDILQNWTELGLKAIGN 101 (486)
T ss_dssp SH-----HHHHHHHHHHHH---HTC-------------------CCCEECCCGGGEEETTTSCHHHHHHHHHHHHHHHHT
T ss_pred CH-----HHHHHHHHHHHh---cccc---c------------cccccccCCChhhccccccCChHHHHHHHHHHHHHHhh
Confidence 85 568899988874 2211 1 1222 3 778777665533 233344567888885
Q ss_pred -ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcC--CcccceEEEecCCCCCchH
Q 008010 288 -ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG--KQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 -kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g--~~~~IPl~IMTS~~~~The 364 (581)
++++|+||||+|||||++.||+ ++||+ +|+ |+||||+++++|+++++++.+++| +.+.||||||||+ .||+
T Consensus 102 gkvavvlLaGG~GTRLg~~~PK~--l~~v~-l~~-gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~--~t~~ 175 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLGSSAPKG--CFNIE-LPS-QKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRN 175 (486)
T ss_dssp TCEEEEEEEESBCGGGTCSSBGG--GCBCC-CTT-CCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECG--GGHH
T ss_pred CCeEEEEEcCCccccCCCCCCCc--cceec-CCC-CCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECC--CCHH
Confidence 7999999999999999999999 99998 565 999999999999999999988877 6678999999999 4999
Q ss_pred HHHHHHHHcCCCCCCCCceEEEecCceeeEecCCC-ccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEE
Q 008010 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDG-QWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVR 443 (581)
Q Consensus 365 ~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~G-kill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~ 443 (581)
.|++||++|+|||++.++|+||+|+++||++.+ | +|++++++.++|+|+||||+|.+|+++|+||+|.++|++|++|+
T Consensus 176 ~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~d-g~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~ 254 (486)
T 2yqc_A 176 ATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQ-GNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMY 254 (486)
T ss_dssp HHHHHHHHTGGGGSCGGGEEEEECCEEECBCTT-SSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhhccccCCCcceEEEEecccceeEcCC-CCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEE
Confidence 999999999999999999999999999999985 9 99999999999999999999999999999999999999999999
Q ss_pred eCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCC
Q 008010 444 QVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSS 522 (581)
Q Consensus 444 ~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~d 522 (581)
|+||+|++ +||. |+|++...+..++++ |++|+.+++++|+++.. ..||+ +++|||+|+++. +++..+++
T Consensus 255 ~vDN~l~~~~Dp~---~lg~~~~~~~~~~~~-vv~k~~~~e~~Gvl~~~-~~dg~----~~vvEy~E~~~~-~~~~~~~~ 324 (486)
T 2yqc_A 255 CVDNCLVKVADPI---FIGFAIAKKFDLATK-VVRKRDANESVGLIVLD-QDNQK----PCVIEYSEISQE-LANKKDPQ 324 (486)
T ss_dssp ETTBTTCCTTCHH---HHHHHHHHTCSEEEE-EEECCSTTCCCCEEEEE-TTTTE----EEEECGGGSCHH-HHHCEETT
T ss_pred CCCCceeeccCHH---HHHHHHHcCCCEEEE-EEEcCCCCCceeEEEEE-ecCCC----EEEEEEecCCHH-Hhhccccc
Confidence 99999997 9998 589999999999988 57788999999998863 23788 899999999984 55444333
Q ss_pred --CCcccccC-CccceeEEeHHHHHHhhcccCCCC---cccccccCCCCccccCC-CCCeee
Q 008010 523 --NGLQADFP-ANTNILYVDLASAELVGSSENERS---LPGMVLNTKKPIVYMDN-FGDTHR 577 (581)
Q Consensus 523 --g~l~S~F~-~NiN~l~fsL~~L~~v~~~~~~~~---LP~Hv~na~KkIpy~D~-~G~~~~ 577 (581)
|.+. |+ +||||+||++++|++++.. .... ||+|+ |+|||||+|. +|+.++
T Consensus 325 ~~~~~~--~~~~Ni~~~~~~l~~L~~~l~~-~~~~~~~lp~~v--~~Kki~~~d~~~g~~~~ 381 (486)
T 2yqc_A 325 DSSKLF--LRAANIVNHYYSVEFLNKMIPK-WISSQKYLPFHI--AKKKIPSLNLENGEFYK 381 (486)
T ss_dssp EEEEES--SCEEEEEEEEEEHHHHHHHHHH-HTTCTTTSCCEE--EEECCCEECTTTCCEEC
T ss_pred cccccc--ccceeEEEEEEeHHHHHHHHHh-hcCcccCCcceE--eccccCccccccCeecc
Confidence 4443 54 4999999999999996654 4566 99999 8999999994 787654
No 3
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=3.4e-68 Score=580.30 Aligned_cols=362 Identities=22% Similarity=0.306 Sum_probs=307.1
Q ss_pred ccHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHh
Q 008010 134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI 213 (581)
Q Consensus 134 ~~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~i 213 (581)
|++..|+++|.++||+|||.+ |++ |+++ +|++|++||..+
T Consensus 1 ~~~~~l~~~l~~~gQ~hl~~~---~~~----------------------------------l~~~---ek~~l~~ql~~~ 40 (505)
T 1jv1_A 1 MNINDLKLTLSKAGQEHLLRF---WNE----------------------------------LEEA---QQVELYAELQAM 40 (505)
T ss_dssp CCHHHHHHHHHHTTCGGGGTT---GGG----------------------------------SCHH---HHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCcHHHHhh---hhc----------------------------------CCHH---HHHHHHHHHHHh
Confidence 456779999999999999999 998 7664 999999999999
Q ss_pred hccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccccCc--hHHHHHHHHHHhcc--Cc
Q 008010 214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNT--EYAAQAALWGIEGL--PE 288 (581)
Q Consensus 214 d~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~--~~~~~~~~~G~e~L--~k 288 (581)
|. .++..|+++|++.+..|++ ... ..+.+ |+|++...++.+ +.....++.|.+.+ .+
T Consensus 41 d~-----~~~~~~~~~~~~~~~~s~~-~~~------------~~~~i~p~p~~~~~~~~~~~~~~~~~~~~Gl~~i~~~k 102 (505)
T 1jv1_A 41 NF-----EELNFFFQKAIEGFNQSSH-QKN------------VDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNK 102 (505)
T ss_dssp CH-----HHHHHHHHHHHHCC------------------------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTC
T ss_pred CH-----HHHHHHHHHHHHhhhhccc-cCc------------ccccccCCChHhcccccCChHHHHHHHHHhHHhhccCc
Confidence 96 4688899888876554321 101 11234 777777766633 23334445677775 57
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+++|+||||+|||||++.||+ ++||+ +|. |+||||+++++|.++|+|+.+++|..+.||||||||+ .||+.|++
T Consensus 103 vavViLAGG~GTRLg~~~PK~--l~pv~-~~~-gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~--~t~e~t~~ 176 (505)
T 1jv1_A 103 VAVLLLAGGQGTRLGVAYPKG--MYDVG-LPS-RKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKE 176 (505)
T ss_dssp EEEEEECCCCCCTTSCSSCGG--GCCCC-CTT-CCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHH
T ss_pred eEEEEEcCCccccCCCCCCCc--cceee-cCC-CCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecC--CCHHHHHH
Confidence 999999999999999999999 99998 554 9999999999999999999889997788999999999 49999999
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
||++|+|||+++++|++|+|+++||++++ |++++++++.++|+|+||||+|++|+++|++++|+++|++|++|+|+||+
T Consensus 177 ~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~-g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~ 255 (505)
T 1jv1_A 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFD-GKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI 255 (505)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETT-SCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred HHHhhhhcCCCcCceEEEEecceEEEcCC-CcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCcc
Confidence 99999999999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred ccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCccc
Q 008010 449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527 (581)
Q Consensus 449 Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S 527 (581)
|+. .||. ++|++...+..+++. |++|+.+++++|+++.. ||+ +++|||+|+++. .++..+++|.+.
T Consensus 256 L~~~~d~~---~lg~~~~~~~~~~~~-v~~k~~~~e~~Gvl~~~---dg~----~~vvEy~E~p~~-~~~~~~~~g~~~- 322 (505)
T 1jv1_A 256 LVKVADPR---FIGFCIQKGADCGAK-VVEKTNPTEPVGVVCRV---DGV----YQVVEYSEISLA-TAQKRSSDGRLL- 322 (505)
T ss_dssp TCCTTCHH---HHHHHHHTTCSEEEE-EEECCSTTCSCCEEEEE---TTE----EEEECGGGSCHH-HHHCBCTTSSBS-
T ss_pred ccccchHH---HHHHHHHcCCCEEEE-EEEccCCccCcceEEEE---CCe----EEEEEEeeCCHH-Hhhhcccccccc-
Confidence 887 8997 589999999888887 57778899999998874 788 899999999994 555555566654
Q ss_pred ccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCCCCeee
Q 008010 528 DFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHR 577 (581)
Q Consensus 528 ~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~G~~~~ 577 (581)
|+. ||||+||++++|+++.+. +...||+|+ |+|||||+|.+|+.++
T Consensus 323 -~~~~N~~~~~f~l~~L~~i~~~-~~~~l~~hv--~~Kkip~~d~~g~~v~ 369 (505)
T 1jv1_A 323 -FNAGNIANHFFTVPFLRDVVNV-YEPQLQHHV--AQKKIPYVDTQGQLIK 369 (505)
T ss_dssp -SCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEE--EEECCCEECTTSCEEC
T ss_pred -cceeeEEEEEecHHHHHHHHHh-hcccCCcee--cccccccccCCCCCcC
Confidence 765 999999999999999875 567899999 8899999998887764
No 4
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=1.5e-67 Score=573.54 Aligned_cols=306 Identities=18% Similarity=0.213 Sum_probs=246.6
Q ss_pred cchhcHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccccCch
Q 008010 195 LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLSQNTE 273 (581)
Q Consensus 195 l~~~~~~ek~~Ll~qL~~id~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~~ 273 (581)
|+++ +|+.|.+||+.+.. .+++++.... ... .|+.+ |+|++...++.+.
T Consensus 63 l~~~---~~~~~~~el~~f~~-------------lf~r~l~~~~---~~~-----------~~~~i~p~p~~~~~~~~~l 112 (528)
T 3r3i_A 63 ASSH---EFEHTKKDLDGFRK-------------LFHRFLQEKG---PSV-----------DWGKIQRPPEDSIQPYEKI 112 (528)
T ss_dssp CCTT---TTHHHHHHHHHHHH-------------HHHHHHHC---------------------CCCCCCCTTTSEEHHHH
T ss_pred cCHH---HHHHHHHHHHHHHH-------------HHHHHHhhcc---CCC-----------CHHHCcCCCHHHccCHhhc
Confidence 6554 89999998877642 3344554321 111 35666 7777777776542
Q ss_pred HHHHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEE
Q 008010 274 YAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVA 353 (581)
Q Consensus 274 ~~~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~ 353 (581)
............+.++|+|+||||||||||+++||+ +||| | +++||||++++||++++ ++|| +.||||
T Consensus 113 ~~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~--~i~V---~-sgktflql~~eqI~~l~----~~~g--~~IPl~ 180 (528)
T 3r3i_A 113 KARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKS--LIGV---R-NENTFLDLTVQQIEHLN----KTYN--TDVPLV 180 (528)
T ss_dssp TTSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGG--GSEE---E-TTEEHHHHHHHHHHHHH----HHHT--CCCCEE
T ss_pred CCccccchhhhhcCceEEEEeCCCCccccCCCCCcc--ceec---C-CCCcHHHHHHHHHHHHH----HHhC--CCCCEE
Confidence 210000012346889999999999999999999999 9997 3 59999999999999998 4667 789999
Q ss_pred EecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCcccccc------CCCccccCCCCcHHHHHHHhcC
Q 008010 354 IMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR------PFAPVCKPGGHGAIWKLAHDKG 427 (581)
Q Consensus 354 IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~------~~~i~~~P~GhGdIy~aL~~sG 427 (581)
||||+ +||++|++||++|+||| .||++|+|+++||++++ |+++++. +++++|+|+||||||.+|+++|
T Consensus 181 IMTS~--~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~d-g~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sG 254 (528)
T 3r3i_A 181 LMNSF--NTDEDTKKILQKYNHCR---VKIYTFNQSRYPRINKE-SLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSG 254 (528)
T ss_dssp EEECT--TTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEETT-TCCCC-------------CBCCBTTTHHHHHHHHS
T ss_pred EEecc--chhHHHHHHHHhcCccC---CCeEEEEeCCeeeEecC-CceecccccccCCCcceeeCcCCChHHHHHHHHCC
Confidence 99999 59999999999999999 59999999999999988 9999986 8899999999999999999999
Q ss_pred chHHHHHcCceEEEEEeCCCcccccchhhHHHhhhhhhc----CCceeEEEEeccCCCcccceEEEEeecCCCccccceE
Q 008010 428 IFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHH----GKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLS 503 (581)
Q Consensus 428 lLd~l~~~Gikyi~v~~vDN~Lak~DP~~~~~lG~~~~~----~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~ 503 (581)
+||+|+++|+||+||+||||+||++||.| +|+++.. +.+++++ |++|+.++|++|+||+ .||+ ++
T Consensus 255 lLd~l~~~Gieyi~v~nvDNlga~vDp~~---Lg~~~~~~~~~~~d~~~k-Vv~Kt~~dek~Gvl~~---~dGk----~~ 323 (528)
T 3r3i_A 255 LLDTFIGEGKEYIFVSNIDNLGATVDLYI---LNHLMNPPNGKRCEFVME-VTNKTRADVKGGTLTQ---YEGK----LR 323 (528)
T ss_dssp HHHHHHHTTCCEEEEEETTBTTCCCCHHH---HHHHSSCSSSCCCSEEEE-ECCCCTTCCSSCEEEC---SSSS----CE
T ss_pred hHHHHHhcCCEEEEEEccCCcccccCHHH---HHHHHhcccccCCcEEEE-EeEccccCCcccEEEE---ECCe----EE
Confidence 99999999999999999999999999995 8888887 6677776 6889999999999997 4898 89
Q ss_pred EEEecccCCCCCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCcc
Q 008010 504 CIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIV 567 (581)
Q Consensus 504 ~VEYsEl~~~~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIp 567 (581)
+|||+|++++ +++. .+| .+.|++ |||||||++++|+++++. ....||+|+ ++|+||
T Consensus 324 vvEyseip~e-~~~~--~~g--~~~f~~~Ntnnlw~~L~~L~~v~~~-~~l~Lp~iv--n~K~vd 380 (528)
T 3r3i_A 324 LVEIAQVPKA-HVDE--FKS--VSKFKIFNTNNLWISLAAVKRLQEQ-NAIDMEIIV--NAKTLD 380 (528)
T ss_dssp EECTTSSCGG-GTTT--SSC--SSSCCCCEEEEEEEEHHHHHHHHHT-TCCCCCCEE--EEECCS
T ss_pred EEEecCCChh-Hhhc--cCC--cccCCeEEEEEEEEEHHHHHHHHHh-CCCCCCcee--cCcccC
Confidence 9999999994 5543 234 455996 999999999999999986 567899999 889997
No 5
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=5.8e-66 Score=548.35 Aligned_cols=272 Identities=20% Similarity=0.323 Sum_probs=250.2
Q ss_pred HHHHHHhcc--CceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHh-cCCcccceEEE
Q 008010 278 AALWGIEGL--PELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKL-YGKQCITPVAI 354 (581)
Q Consensus 278 ~~~~G~e~L--~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~-~g~~~~IPl~I 354 (581)
..+.|.+.+ .++|+|+||||||||||+++||+ ++||| +|+ ||||||+++++|+++|+|+.+. +|..+.|||||
T Consensus 23 ~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~--~~~Vg-l~~-gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~I 98 (405)
T 3oc9_A 23 HYYRGLELISQGKTALITPAGGQGSRLGFEHPKG--MFVLP-FEI-PKSIFQMTSERLLRLQELASEYSHQKNVMIHWFL 98 (405)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGG--GCEEC-SSS-CEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEE
T ss_pred HHHHHHHHHhcCceEEEEecCCCcccccCCCCCc--ccccc-CCC-CCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEE
Confidence 345788888 48999999999999999999999 99998 665 9999999999999999999776 67668999999
Q ss_pred ecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHH
Q 008010 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (581)
Q Consensus 355 MTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~ 434 (581)
|||+ .||+.|++||++|+|||++++||++|+|+++||++.+ |+++|+++++++|+|+||||+|++|+++|+||+|++
T Consensus 99 MtS~--~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~d-g~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~ 175 (405)
T 3oc9_A 99 MTNE--ETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN-GKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNE 175 (405)
T ss_dssp EECT--TTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTT-SCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHH
T ss_pred EeCC--ccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecC-CCeecCCCCccccccCCChHHHHHHHHCCcHHHHHh
Confidence 9999 4999999999999999999999999999999999876 999999999999999999999999999999999999
Q ss_pred cCceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCC
Q 008010 435 NGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF 513 (581)
Q Consensus 435 ~Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~ 513 (581)
+|+||++|+||||+|++ +||. |+|+++..+..++++ |++|+.+++++|++|.. ||+ +++|||+|+++
T Consensus 176 ~Gieyi~v~nvDN~L~~~~Dp~---~lg~~~~~~~d~~~k-vv~k~~~dek~Gvl~~~---dg~----~~vvEysei~~- 243 (405)
T 3oc9_A 176 KGIKYSVAHNVDNILCKDVDPN---MIGYMDLLQSEICIK-IVKKGFKEEKVGVLVKE---QER----IKVVEYTELTD- 243 (405)
T ss_dssp HTCCEEEEECTTBTTCCSSCHH---HHHHHHHTTCSEEEE-EEECCSTTCSCCEEEEE---TTE----EEEECGGGCCT-
T ss_pred cCCEEEEEEeCCCcccccCCHH---HHHHHHHcCCCEEEE-EEECCCCCCccceEEEE---CCe----eEEEEEeeCCH-
Confidence 99999999999998888 8998 599999999999988 57788899999999874 888 89999999999
Q ss_pred CCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCCCCeee
Q 008010 514 GITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHR 577 (581)
Q Consensus 514 ~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~G~~~~ 577 (581)
+ ++.++.+|.++ |++ ||.||+|+++||++++. ..||+|+ |+|||||+|++|+.++
T Consensus 244 e-~e~~~~~g~l~--fn~~Ni~~h~fs~~fL~~i~~----~~l~~h~--a~Kkip~~d~~g~~~~ 299 (405)
T 3oc9_A 244 E-LNKQLSNGEFI--YNCGHISINGYSTSFLEKAAE----YQLPYHI--AKKKVPFVNEQGIVIH 299 (405)
T ss_dssp T-TTCBCTTSCBS--SCEEEEEEEEEEHHHHHHHTT----CCCCCEE--EEECCCEECTTSCEEC
T ss_pred H-HhhcCCCCcee--eccceeEeeecCHHHHHHhhh----ccCCcEE--eccccCccCCCCCCcc
Confidence 5 77777788888 988 88899999999999983 5799999 8899999999998654
No 6
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=4e-64 Score=543.03 Aligned_cols=285 Identities=15% Similarity=0.082 Sum_probs=241.3
Q ss_pred ccccccCCCCcccccCchHHHHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 256 QFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 256 ~~~~~~vP~g~~ls~~~~~~~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+|+.+.+|. ...++.+.... ..|.+.|+++|+|+||||||||||+++||| +|||+ +|+||||++++||++
T Consensus 48 ~~~~i~p~~-~~~~~~~l~~~---~~G~~~L~kvavvlLaGGlGTRLG~~~pKg--~~~v~----sgksflql~~eqI~~ 117 (484)
T 3gue_A 48 PEKSISPVE-SLPFLQGIETK---GENTALLRQAVVLKLNGGLGTGMGLNGPKS--LLQVK----NGQTFLDFTALQLEH 117 (484)
T ss_dssp CGGGCEECC-CCCBHHHHCCS---SCCHHHHTTEEEEEEECCCCGGGTCSSCGG--GSEEE----TTEEHHHHHHHHHHH
T ss_pred CHhhCCChh-ccCChhhcCCc---hHHHHHHhhcEEEEEcCCcccccCCCCCce--eeecC----CCCcHHHHHHHHHHH
Confidence 467776555 33344332111 158889999999999999999999999999 99996 599999999999999
Q ss_pred HHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccc-cccCCCccccCC
Q 008010 336 REFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPG 414 (581)
Q Consensus 336 lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkil-l~~~~~i~~~P~ 414 (581)
+|+ .+| +.||||||||+ +||++|++||++|+|||+++++|++|+|+++||++.+++.++ ++++++++|+|+
T Consensus 118 l~~----~~~--~~iPl~IMTS~--~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~ 189 (484)
T 3gue_A 118 FRQ----VRN--CNVPFMLMNSF--STSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPP 189 (484)
T ss_dssp HHH----HHT--CCCCEEEEECT--TTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECC
T ss_pred HHH----HcC--CCceEEEECCc--chhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccC
Confidence 984 456 78999999999 599999999999999999999999999999999999844444 678889999999
Q ss_pred CCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEe---
Q 008010 415 GHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEK--- 491 (581)
Q Consensus 415 GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k--- 491 (581)
||||+|.+|+++|+||+|+++|+||+|||||||+++.+||. |+|+++..+.+++++ |++|+.+++++|+||..
T Consensus 190 GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~---~lG~~~~~~~d~~~k-vv~Kt~~dekgG~l~~~~~~ 265 (484)
T 3gue_A 190 GHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR---LLDYMHEKQLGFLME-VCRRTESDKKGGHLAYKDVI 265 (484)
T ss_dssp CGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH---HHHHHHHTTCSEEEE-EEECCTTCCSSEEEEEEC--
T ss_pred CchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH---HHHHHHhcCCCEEEE-EEECCCCCCceeEEEEEccc
Confidence 99999999999999999999999999999999944449998 499999999999999 57789999999999874
Q ss_pred ----ecCCCccccceEEEEecccCCCCCCCC-CCCCCCcccccCCccceeEEeHHHHHHhhccc-CCCCcccccccCCCC
Q 008010 492 ----KNLDGKWAYGLSCIEYTEFDKFGITRG-PFSSNGLQADFPANTNILYVDLASAELVGSSE-NERSLPGMVLNTKKP 565 (581)
Q Consensus 492 ----~~~dGke~~gv~~VEYsEl~~~~~~~~-~~~dg~l~S~F~~NiN~l~fsL~~L~~v~~~~-~~~~LP~Hv~na~Kk 565 (581)
.+.||+ +++|||+|+++ ++++. .+.+|.++ | ||||+|+++++|+++++.. +...||+|+ |+|+
T Consensus 266 ~~~~~~~dG~----~~vvEyseip~-e~~~~f~~~~g~~~--F--NtnNi~~~l~~l~~~l~~~~g~~~Lp~~v--n~K~ 334 (484)
T 3gue_A 266 DETTGQTRRR----FVLRESAQCPK-EDEDSFQNIAKHCF--F--NTNNIWINLMELKKMMDEQLGVLRLPVMR--NPKT 334 (484)
T ss_dssp ------CCCE----EEEEEGGGSCG-GGHHHHTCTTTSCE--E--EEEEEEEEHHHHHHHHHHTTTCCCCCCEE--EEEE
T ss_pred cccccCCCCC----EEEEEeccCCH-HHHhhhcCCCCceE--e--EeeeEEEEHHHHHHHHHhccCcCCCCcEe--ccce
Confidence 235888 89999999999 46553 44455544 6 9999999999999998852 356899999 8999
Q ss_pred ccccCCCC
Q 008010 566 IVYMDNFG 573 (581)
Q Consensus 566 Ipy~D~~G 573 (581)
|+..++++
T Consensus 335 id~~k~~~ 342 (484)
T 3gue_A 335 VNPQDSQS 342 (484)
T ss_dssp SSTTCTTS
T ss_pred ecCCCCCC
Confidence 98776543
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1.2e-54 Score=472.98 Aligned_cols=287 Identities=17% Similarity=0.078 Sum_probs=240.1
Q ss_pred cccccCCCCcccccCchHHHHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHH
Q 008010 257 FLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAR 336 (581)
Q Consensus 257 ~~~~~vP~g~~ls~~~~~~~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~l 336 (581)
|+.+.+| +...++.+... .+|.+.|+++++|+||||+|||||++.||+ ++||+ +||||||+++++|+++
T Consensus 49 ~~~i~p~-~~~~~~~~~~~----~~g~~~l~k~avViLAGGlGTRLg~~~PK~--llpV~----~gk~fLe~~ie~l~~~ 117 (505)
T 2oeg_A 49 DSAIMPV-DSLDALDSLTI----ECDNAVLQSTVVLKLNGGLGTGMGLCDAKT--LLEVK----DGKTFLDFTALQVQYL 117 (505)
T ss_dssp GGGCBCC-CCCCBGGGCCC----CCCHHHHHTEEEEEEECCCCGGGTCCSCGG--GSEEE----TTEEHHHHHHHHHHHH
T ss_pred hhhcCCh-hhccChhhcch----hHHHHHHhcceEEEEcCCcccccCCCCCCc--ccccC----CCCcHHHHHHHHHHHH
Confidence 4567555 44445543221 278889999999999999999999999999 99996 4999999999999999
Q ss_pred HHHHHHhcCCcccceEEEecCCCCCchHHHHHHHH-HcCCCCCCCCceEEEecCceeeEecCCCccc-cccCCCccccCC
Q 008010 337 EFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCE-RLRWFGRGQSSFQLFEQPLVPAVDAEDGQWL-VMRPFAPVCKPG 414 (581)
Q Consensus 337 q~La~~~~g~~~~IPl~IMTS~~~~The~T~~fle-kn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkil-l~~~~~i~~~P~ 414 (581)
+. .+| +.||||||||+ .||+.|++||+ +++|||+++++|++|+|+++||+++++++++ ++++..++|+|+
T Consensus 118 ~~----~~g--~~ip~viMtS~--~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~ 189 (505)
T 2oeg_A 118 RQ----HCS--EHLRFMLMDSF--NTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPP 189 (505)
T ss_dssp HH----HTC--TTCEEEEEECH--HHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECC
T ss_pred HH----hcC--CCcCEEEEeCC--CCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcC
Confidence 84 456 68999999999 59999999999 9999999999999999999999999866877 788888999999
Q ss_pred CCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEee--
Q 008010 415 GHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKK-- 492 (581)
Q Consensus 415 GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~-- 492 (581)
||||+|++|+++|++++|.++|++|++|+|+||+.+.+||. ++|++..++..+++++ ++|..+++++||++.++
T Consensus 190 G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~~---llg~~~~~~ad~~~~v-~~k~~~d~~~Gvl~~~~~~ 265 (505)
T 2oeg_A 190 GHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKR---VLAYMEKEKIDFLMEV-CRRTESDKKGGHLARQTVY 265 (505)
T ss_dssp CTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCHH---HHHHHHHHTCSEEEEE-EECCTTCCSSEEEEEEEEE
T ss_pred CchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCHH---HHHHHHhcCCcEEEEE-EEecCCccceeEEEEeccc
Confidence 99999999999999999999999999999999965458996 5899999999999985 66777888889987642
Q ss_pred --cCCCc--cccc-eEEEEecccCCCCCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhccc-CCCCcccccccCCCC
Q 008010 493 --NLDGK--WAYG-LSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSE-NERSLPGMVLNTKKP 565 (581)
Q Consensus 493 --~~dGk--e~~g-v~~VEYsEl~~~~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~-~~~~LP~Hv~na~Kk 565 (581)
+.||+ ..|. +.++||+|+++. ..+.. +|. ++||+ |||||||+++||+++++.. +...||+|+ |.|+
T Consensus 266 ~~~~dg~~nvEyn~~~llEyse~p~e-~~~~~--~g~--~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~v--n~K~ 338 (505)
T 2oeg_A 266 VKGKDGQPDAEKRVLLLRESAQCPKA-DMESF--QDI--NKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIR--NEKT 338 (505)
T ss_dssp ECCSSSCCCEEEEEEEEEEGGGSCGG-GHHHH--HCT--TTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEE--EEEE
T ss_pred ccccCCccccccCceeEEEeccCChh-hhhcc--cCc--cccCeeEEEEEEEEHHHHHHHHhhhcCccCCccee--cccc
Confidence 14676 1122 578999999984 44322 233 55995 9999999999999998742 345799999 8999
Q ss_pred ccccCCCC
Q 008010 566 IVYMDNFG 573 (581)
Q Consensus 566 Ipy~D~~G 573 (581)
|||.|+++
T Consensus 339 i~~~d~~~ 346 (505)
T 2oeg_A 339 VDSSNSAS 346 (505)
T ss_dssp SSSSCTTS
T ss_pred cCCCCCCC
Confidence 99998543
No 8
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-53 Score=460.02 Aligned_cols=328 Identities=20% Similarity=0.220 Sum_probs=260.5
Q ss_pred hhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHHhchhcc
Q 008010 162 EARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFER 241 (581)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~id~~y~~~ggl~~y~~~a~~ll~~s~~~~ 241 (581)
.+.++||++|.+|++++. . ++++|++|.+||..++..| ++++...+ +
T Consensus 11 ~~~~~~~~~l~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~ 57 (488)
T 2i5k_A 11 VAASQMRNALNKLADSSK---------------L---DDAARAKFENELDSFFTLF-------------RRYLVEKS--S 57 (488)
T ss_dssp CHHHHHHHHTTCCC--------------------------CCSCTHHHHHHHHHHH-------------HHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHhhcC---------------C---CHHHHHHHHHHHHHHHHHH-------------HHHHhccc--c
Confidence 578999999999999976 1 1347888999998776433 34443321 1
Q ss_pred ccccccccccccccccccc-cCCCCcccccCchHHHHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCC
Q 008010 242 KTTKSQHVHESMECQFLEI-HVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPY 320 (581)
Q Consensus 242 ~~~n~~~~~~~~~~~~~~~-~vP~g~~ls~~~~~~~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps 320 (581)
+.. .+|+.+ |+|++...++.+.... +.|.+.+.++++|+||||+|||||++.||+ ++||+
T Consensus 58 ~~~----------~~~~~i~p~~~~~~~~~~~~~~~---~~~~~~~~k~avViLAGG~GTRmgs~~PK~--l~~V~---- 118 (488)
T 2i5k_A 58 RTT----------LEWDKIKSPNPDEVVKYEIISQQ---PENVSNLSKLAVLKLNGGLGTSMGCVGPKS--VIEVR---- 118 (488)
T ss_dssp CCS----------CCGGGEECCCTTTEEEHHHHHSS---CCCSTTGGGEEEEEECCCBSGGGTCCSBST--TSCCB----
T ss_pred cCC----------CcccccccCChhcccChhhcccc---hhhhhhcCCceEEEEcCCCcccCCCCCCcc--ccccC----
Confidence 111 256676 7777777776442210 126777889999999999999999999999 99983
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCc
Q 008010 321 CGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQ 400 (581)
Q Consensus 321 ~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gk 400 (581)
+||||||++++++++++ ..+| +.||||||||+. |++.|++||+++++||+ +|.+|.|+++||++.+ |+
T Consensus 119 ~gk~~Le~~i~~i~~l~----~~~G--~~Ip~vImts~~--t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~d-~~ 186 (488)
T 2i5k_A 119 EGNTFLDLSVRQIEYLN----RQYD--SDVPLLLMNSFN--TDKDTEHLIKKYSANRI---RIRSFNQSRFPRVYKD-SL 186 (488)
T ss_dssp TTBCHHHHHHHHHHHHH----HHHT--CCCEEEEECCTT--THHHHHHHHGGGCSSSC---EEEEECCCCEECEETT-TC
T ss_pred CCCcHHHHHHHHHHHhH----HhcC--CCccEEEEECCC--CHHHHHHHHHhccccCc---eEEEEEeCccceEccc-cc
Confidence 59999999999999986 4556 689999999984 99999999999999998 7999999999999987 99
Q ss_pred cccccCC---CccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEe
Q 008010 401 WLVMRPF---APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCK 476 (581)
Q Consensus 401 ill~~~~---~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~ 476 (581)
++++.+. +++|+|+||||+|.+|+.+|++++|.++|++|++|+|+|| |++ .||.+ +|++...+..+++++ +
T Consensus 187 ~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~---L~~~~~~~a~~t~~v-~ 261 (488)
T 2i5k_A 187 LPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKI---LNHMIETGAEYIMEL-T 261 (488)
T ss_dssp CBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHH---HHHHHHSCCSEEEEE-E
T ss_pred eeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHH---HHHHHhcCCcEEEEE-E
Confidence 9998654 7999999999999999999999999999999999999999 776 89984 689888888899885 6
Q ss_pred ccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCc
Q 008010 477 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSL 555 (581)
Q Consensus 477 RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~L 555 (581)
+++.+++++|+++.. ||+ +.+|||+|+++. ..+... +.+. |+. ||||+||++++|+++++. ....|
T Consensus 262 ~~~~p~~~yG~Iv~~---dG~----~~iVE~~e~~~e-~~~~~~--~~~~--~~~~Ntgi~~f~~~~L~~~l~~-~~~~l 328 (488)
T 2i5k_A 262 DKTRADVKGGTLISY---DGQ----VRLLEVAQVPKE-HIDEFK--NIRK--FTNFNTNNLWINLKAVKRLIES-SNLEM 328 (488)
T ss_dssp ECCGGGSSSCEEEEE---TTE----EEEECGGGSCTT-SHHHHT--CTTT--CCEEEEEEEEEEHHHHHHHHHT-TCCCC
T ss_pred EecCCCCceeEEEEE---CCc----EEEEEeccCCHH-HHhhcc--cccc--cCEEEEEEEEEeHHHHHHHHhh-ccCCC
Confidence 788899988888763 788 899999999994 433221 2222 555 999999999999999986 66889
Q ss_pred ccccccCCCCccccCCCCC
Q 008010 556 PGMVLNTKKPIVYMDNFGD 574 (581)
Q Consensus 556 P~Hv~na~KkIpy~D~~G~ 574 (581)
|+|+ |.||||| |.+|.
T Consensus 329 p~~v--~~K~i~~-~~~~~ 344 (488)
T 2i5k_A 329 EIIP--NQKTITR-DGHEI 344 (488)
T ss_dssp CCBC--CEECCCC------
T ss_pred ccee--cCccccC-CCCCC
Confidence 9999 8999999 65444
No 9
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=8.1e-52 Score=447.85 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=233.6
Q ss_pred ccccc-cCCCCcccccCchHH-HHHHHHHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHH
Q 008010 256 QFLEI-HVPSGLDLSQNTEYA-AQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDL 333 (581)
Q Consensus 256 ~~~~~-~vP~g~~ls~~~~~~-~~~~~~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I 333 (581)
+|+.+ |+|++...++.+... ...++.|.+.+.++++|+||||+|||||++.||+ ++||+ +|+||||+++++|
T Consensus 45 ~~~~i~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~--llpv~----~gkp~Le~~i~~l 118 (469)
T 2icy_A 45 EWSKIQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKS--VIEVR----DGLTFLDLIVIQI 118 (469)
T ss_dssp CGGGCBCCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGG--GSEEE----TTEEHHHHHHHHH
T ss_pred cccccccCCcccccChhhcccchhhHHHHHHhhccceEEEEcCCccccCCCCCCcc--ccccC----CCCCHHHHHHHHH
Confidence 46666 777777777754321 1223468999999999999999999999999999 99984 5999999999999
Q ss_pred HHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccC---CCcc
Q 008010 334 QAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPV 410 (581)
Q Consensus 334 ~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~---~~i~ 410 (581)
++++ +.+| +.||||||||+ .||+.|++||++|+|||+ +|++|+|+++||++.+ |+++++.+ +.++
T Consensus 119 ~~~~----~~~G--~~ip~vimts~--~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~~e-~~~~l~~~~~~~~~e 186 (469)
T 2icy_A 119 ENLN----NKYG--CKVPLVLMNSF--NTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVAD-EFVPWPSKGKTDKEG 186 (469)
T ss_dssp HHHH----HHHS--CCCCEEEEECT--TTHHHHHHHHGGGTTSSS---CEEEEECCCEECEETT-TTEEGGGGTCCSGGG
T ss_pred HHHH----HhcC--CCccEEEEeCC--CCHHHHHHHHHhcccCCc---eEEEEEecceeeEccc-cCccccCCCCCcccc
Confidence 9986 4567 68999999999 499999999999999998 8999999999999987 89999866 7899
Q ss_pred ccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEE
Q 008010 411 CKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIE 490 (581)
Q Consensus 411 ~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~ 490 (581)
|+|+||||+|++|+++|++++|.++|++|++|+|+||+.+..||. |+|++..++..+.+++ +++..+++++||++.
T Consensus 187 ~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~---ll~~~~~~~a~~t~~v-~~k~~~~~~~Gvl~~ 262 (469)
T 2icy_A 187 WYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT---ILKHLIQNKNEYCMEV-TPKTLADVKGGTLIS 262 (469)
T ss_dssp EECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH---HHHHHHHHTCSEEEEE-EECCTTCCSSCEEEE
T ss_pred CCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHH---HHHHHHHcCCCeeEEE-EEeccCCCceeEEEE
Confidence 999999999999999999999999999999999999965558997 5899999999999885 678888999999886
Q ss_pred eecCCCccccceEEEEecccCCCCCCCCCCCCCCcccccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCcc
Q 008010 491 KKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIV 567 (581)
Q Consensus 491 k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIp 567 (581)
. ||+ +.++||+|+++. ..+... +... |+. ||||+||++++|+++.+. ....||+|+ +.|+|.
T Consensus 263 ~---dg~----~~vvE~~e~p~~-~~~e~k-~~~~---~~~~N~g~y~~~~~~L~~i~~~-~~~~lp~~v--~~K~id 325 (469)
T 2icy_A 263 Y---EGK----VQLLEIAQVPDE-HVNEFK-SIEK---FKIFNTNNLWVNLKAIKKLVEA-DALKMEIIP--NPKEVD 325 (469)
T ss_dssp E---TTE----EEEECGGGSCGG-GHHHHH-SSSS---CCEEEEEEEEEEHHHHHHHHHT-TCCCCCCBC--CEEEET
T ss_pred E---CCE----EEEEEEeccChh-hhhhhc-cccc---cceeeEEEEEEcHHHHHHHHhc-ccCCchhhc--cceecC
Confidence 3 788 899999999983 332100 1111 444 999999999999999875 567899999 889984
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.12 E-value=1.5e-05 Score=86.00 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=121.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.+++|+||||.||||...-||- ++||+ ||++++..++.+..+ | .--++|.|+. -.+..+
T Consensus 12 ~~~vvILAaG~GtRm~~~~pK~--l~pv~-----gkp~i~~~l~~~~~~--------g---~~~i~vv~~~---~~~~i~ 70 (501)
T 3st8_A 12 DTAVLVLAAGPGTRMRSDTPKV--LHTLA-----GRSMLSHVLHAIAKL--------A---PQRLIVVLGH---DHQRIA 70 (501)
T ss_dssp CEEEEEEECSCCGGGCCSSCGG--GCEET-----TEEHHHHHHHHHHHH--------C---CSEEEEEECT---THHHHH
T ss_pred CceEEEECCcCcccCCCCCCHH--HeEEC-----ChhHHHHHHHHHHhC--------C---CCEEEEEeCC---CHHHHH
Confidence 5899999999999999999999 98884 999999999987664 4 2346778886 678899
Q ss_pred HHHHH-cCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHH-HHHHHhcCchHHHHHcCceEEEEEeC
Q 008010 368 SLCER-LRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAI-WKLAHDKGIFKWFHDNGRKGATVRQV 445 (581)
Q Consensus 368 ~flek-n~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdI-y~aL~~sGlLd~l~~~Gikyi~v~~v 445 (581)
++|.+ .+.||. +|.+..|. .|-|-|+- +.++ +.+.+.-...+.|.+.
T Consensus 71 ~~~~~~~~~~~~---~i~~~~q~----------------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~g 119 (501)
T 3st8_A 71 PLVGELADTLGR---TIDVALQD----------------------RPLGTGHAVLCGL------SALPDDYAGNVVVTSG 119 (501)
T ss_dssp HHHHHHHHHHTS---CCEEEECS----------------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEET
T ss_pred HHHHHHHHhcCC---cEEEEEcC----------------------CCCCcHHHHHHHH------HHhccccccceeeecC
Confidence 99987 345565 56666663 24465553 2222 1222233567888888
Q ss_pred CCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCc
Q 008010 446 SNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGL 525 (581)
Q Consensus 446 DN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l 525 (581)
|.+|...|.. -.++-.+...+..+.+.. .+ .....+-|+++. ..+|+ -..+||.-+.++.+.. -.+
T Consensus 120 d~~l~~~~~~-~~l~~~h~~~~~~~ti~~-~~-~~dp~~yG~i~~--~~~g~---v~~ivEk~~~~~~~~~------i~~ 185 (501)
T 3st8_A 120 DTPLLDADTL-ADLIATHRAVSAAVTVLT-TT-LDDPFGYGRILR--TQDHE---VMAIVEQTDATPSQRE------IRE 185 (501)
T ss_dssp TCTTCCHHHH-HHHHHHHHHTTCSEEEEE-EE-CSCCTTSCEEEE--CTTCC---EEEEECGGGCCHHHHH------CCE
T ss_pred cceeecHHHH-HHHHHHHhhccccceEee-ec-cCCchhcccccc--cccee---EEeeccccCCChhhcc------cee
Confidence 8888875432 234445445555555443 32 223334555443 24665 2446777666552100 011
Q ss_pred ccccCCccceeEEeHHHHHHhhc
Q 008010 526 QADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 526 ~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.|+-+++|+-+.|++++.
T Consensus 186 -----in~Giy~f~~~~l~~~l~ 203 (501)
T 3st8_A 186 -----VNAGVYAFDIAALRSALS 203 (501)
T ss_dssp -----EEEEEEEEEHHHHHHHHT
T ss_pred -----eeceeeeecchhHHHhhh
Confidence 377888999999988765
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.61 E-value=0.00038 Score=68.41 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=106.1
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+ +|- ++|+ .||++++..++++... | + -.++|-| + ++.+.
T Consensus 2 ~~~aiIlA~G~stRlp---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--~-~~ivVv~-~----~~~i~ 55 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKP--LADI-----GGKPMIQWVYEQAMQA--------G--A-DRVIIAT-D----DERVE 55 (252)
T ss_dssp CEEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEE-S----CHHHH
T ss_pred ceEEEEecCcCCCCCC---Ccc--eeeE-----CCEEHHHHHHHHHHhC--------C--C-CeEEEEC-C----HHHHH
Confidence 4678999999999996 788 8887 4999999999987652 3 1 2456666 3 37888
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++ ||. ++.+..| ..|.|-|+++.++..-+ ..+-+++.+.+.|+
T Consensus 56 ~~~~~---~g~---~v~~~~~----------------------~~~~Gt~~~~~~~~~l~------~~~~d~vlv~~gD~ 101 (252)
T 3oam_A 56 QAVQA---FGG---VVCMTSP----------------------NHQSGTERLAEVVAKMA------IPADHIVVNVQGDE 101 (252)
T ss_dssp HHHHH---TTC---EEEECCT----------------------TCCSHHHHHHHHHHHTT------CCTTSEEEECCTTC
T ss_pred HHHHH---cCC---EEEEcCC----------------------CCCCcHHHHHHHHHhcC------cCCCCEEEEEeCCe
Confidence 88886 443 1211111 13567777776664311 12568999999999
Q ss_pred cccccchhhHHHhhhhhhcCCceeEEEEeccCCCc----ccceEEEEeecCCCccccceEEEEecc--cCCCCCCCCCCC
Q 008010 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGAT----EGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPFS 521 (581)
Q Consensus 448 ~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~ad----egvgvLv~k~~~dGke~~gv~~VEYsE--l~~~~~~~~~~~ 521 (581)
++...+ .+-.++......+..+.+.+ .+-..+. ..+|+++. +.+|+ ++.+++ ++. ..+....
T Consensus 102 Pli~~~-~i~~l~~~~~~~~~~~~~~~-~~v~~~~~~~~p~~g~vv~--d~~g~------v~~fsr~~i~~--~~~~~~~ 169 (252)
T 3oam_A 102 PLIPPA-IIRQVADNLAACSAPMATLA-VEIEDEAEVFNPNAVKVIT--DKSGY------ALYFSRATIPW--DRDNFAK 169 (252)
T ss_dssp TTCCHH-HHHHHHHHHHHSSCSEEEEE-EEECCHHHHTCTTSCEEEE--CTTSB------EEEEESSCSSC--CHHHHHS
T ss_pred eecCHH-HHHHHHHHHHhcCCCEEEEe-eecCCHHHhhCCCceEEEE--CCCCe------EEEEeCCCCCC--CCCcccc
Confidence 987621 11123444333444454443 2222211 12233333 24555 234444 322 1100000
Q ss_pred CCC-cccccCCccceeEEeHHHHHHhhc
Q 008010 522 SNG-LQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~-l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
... ....+-.|+.+..|+-++|++...
T Consensus 170 ~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 170 ADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp SSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred ccccccccceEEEEEEEcCHHHHHHHHc
Confidence 000 001133499999999999998764
No 12
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.51 E-value=0.0016 Score=64.89 Aligned_cols=190 Identities=16% Similarity=0.118 Sum_probs=100.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+ ||- ++|+ .||++++..++++.+. | + -.++|-|. ++.+.
T Consensus 9 ~~~aIIlA~G~stRl~---~K~--L~~i-----~GkPli~~~l~~l~~~--------~--i-~~VvVvt~-----~~~i~ 62 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKA--LVDI-----AGKPMIQHVYESAIKS--------G--A-EEVVIATD-----DKRIR 62 (256)
T ss_dssp CCEEEEECCCC---CT---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred CceEEEEcCCCCCCCC---CCC--eeeE-----CCchHHHHHHHHHHhC--------C--C-CEEEEECC-----HHHHH
Confidence 5678999999999998 888 8887 4999999999987652 2 1 13455553 37788
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++ ||. .+.+ ... ..|.|-+.++.++.. +...+.+++.+.+.|+
T Consensus 63 ~~~~~---~g~---~v~~---------~~~-------------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~ 108 (256)
T 3tqd_A 63 QVAED---FGA---VVCM---------TSS-------------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDE 108 (256)
T ss_dssp HHHHH---TTC---EEEE---------CCT-------------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---eEEE---------eCC-------------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCc
Confidence 88875 443 1111 101 135566667666543 2113578999999999
Q ss_pred cccccchhhHHHhhhhhhc-CCceeEEEEeccCC----Cccc-ceEEEEeecCCCccccceEEEEecccCCCCCCCCCCC
Q 008010 448 VVAATDLTLLALAGIGLHH-GKKLGFASCKRSSG----ATEG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFS 521 (581)
Q Consensus 448 ~Lak~DP~~~~~lG~~~~~-~~~~~~~~v~RK~~----adeg-vgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~ 521 (581)
++...+ .+-.++...... +..+... +.+-.. .+.+ ++|++. .+|+ + +.+++=+--...+....
T Consensus 109 Pli~~~-~i~~li~~~~~~~~~~~a~l-~~~v~~~~~~~~p~~vkvv~d---~~g~----~--l~fsr~pip~~r~~~~~ 177 (256)
T 3tqd_A 109 PLIPPD-AIRKLAEDLDEHDNVKVASL-CTPITEVDELFNPHSTKVVLN---RRNY----A--LYFSHAPIPWGRDTFSD 177 (256)
T ss_dssp CCCCHH-HHHHHHHHHHHCC--CEEEE-EEECCCHHHHTCTTSCEEEEC---TTSB----E--EEEESSCSSCCTTTTTC
T ss_pred ccCCHH-HHHHHHHHHHhCCCCCEEEE-eeEcCCHHHhhCCCccEEEEC---CCCE----E--eEEecCCCCCCCccccc
Confidence 998621 111223333222 2233333 222111 1222 566543 4666 3 33444221001110000
Q ss_pred CCCc--ccccCCccceeEEeHHHHHHhhc
Q 008010 522 SNGL--QADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~l--~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.... ...|-.|+.+..|+-++|++...
T Consensus 178 ~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 178 KENLQLNGSHYRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp GGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence 0000 01133488999999999998754
No 13
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.51 E-value=0.0013 Score=69.04 Aligned_cols=204 Identities=11% Similarity=0.047 Sum_probs=109.1
Q ss_pred cCceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCC
Q 008010 286 LPELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKN 361 (581)
Q Consensus 286 L~kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~ 361 (581)
++++..|+||||.||||+ ...||- ++|+ .|+ ++++..++++.+. | .-.++|.|..
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~--llpi-----~gk~pli~~~l~~l~~~--------g---i~~i~vv~~~--- 68 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKP--AVYF-----GGKARIIDFALSNALNS--------G---IRRIGVATQY--- 68 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGG--GSEE-----TTTEETHHHHHHHHHHT--------T---CCEEEEEECT---
T ss_pred hhceEEEEEcCCCCCccchhhcCCccc--cccc-----CCCCcHHHHHHHHHHhC--------C---CCeEEEEeCC---
Confidence 345677999999999999 778998 8887 488 9999999987652 3 1246788876
Q ss_pred chHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccC---CCCcHHHHHHHhcCchHHHHHcCce
Q 008010 362 NHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKP---GGHGAIWKLAHDKGIFKWFHDNGRK 438 (581)
Q Consensus 362 The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P---~GhGdIy~aL~~sGlLd~l~~~Gik 438 (581)
..+.+.+++++. ||+... +.++.++.+... .-...| -|-++- ++. .++.+...+-+
T Consensus 69 ~~~~i~~~~~~~--~~~~~~----~~~~~v~i~~~~----------~~~~~~~~~~Gt~~a---l~~--a~~~l~~~~~~ 127 (420)
T 3brk_X 69 KAHSLIRHLQRG--WDFFRP----ERNESFDILPAS----------QRVSETQWYEGTADA---VYQ--NIDIIEPYAPE 127 (420)
T ss_dssp TCHHHHHHHHHH--SCCCCG----GGTCEEEEECCC-----------------CCCCHHHH---HHT--THHHHHHHCCS
T ss_pred ChHHHHHHHhhh--hccccc----cccCCEEEeCcc----------ccccCCccccCCHHH---HHH--HHHHHHhcCCC
Confidence 568888999875 454320 011112222110 000012 343322 221 13444444568
Q ss_pred EEEEEeCCCcccccchhhHHHhhhhhhcCCceeEEEEeccC-CCcccceEEEEeecCCCccccceEEEEecccCCCCCCC
Q 008010 439 GATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSS-GATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITR 517 (581)
Q Consensus 439 yi~v~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~-~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~ 517 (581)
++.|.+.|.+ ...| +-.++-.+...+..+.+.+ .+.+ ....+-|++.. ..+|+ + +++.|=+.. ...
T Consensus 128 ~~lv~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~~-~~~~~~~~~~~g~v~~--d~~g~----v--~~~~ekp~~-~~~ 194 (420)
T 3brk_X 128 YMVILAGDHI-YKMD--YEYMLQQHVDSGADVTIGC-LEVPRMEATGFGVMHV--NEKDE----I--IDFIEKPAD-PPG 194 (420)
T ss_dssp EEEEEESSCE-ECBC--THHHHHHHHHTTCSEEEEE-EEEETTGGGGSEEEEE--CTTSB----E--EEEEESCSS-CCC
T ss_pred EEEEecccEE-EchH--HHHHHHHHHHcCCeEEEEE-eecCccccCcccEEEE--CCCCc----E--EEeEeCCCc-ccc
Confidence 8999999994 3333 2234555444455544443 2221 22224455432 23454 2 233332221 000
Q ss_pred CCCCCCCcccccCCccceeEEeHHHHHHhhc
Q 008010 518 GPFSSNGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 518 ~~~~dg~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.....+ .+-.|+.+.+|+-+.+.+.+.
T Consensus 195 ~~~~~~----~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 195 IPGNEG----FALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp BTTBTT----EEEEEEEEEEEEHHHHHHHHT
T ss_pred cccccc----ceEEeeeeEEEeHHHHHHHHH
Confidence 000011 133488899999998876553
No 14
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.50 E-value=0.0011 Score=65.41 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=102.5
Q ss_pred ceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
.+..|+||||.||||+- ..||. ++|+ .|+++++..++++.+. | .-.++|.|.. +..+
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~--ll~i-----~g~pli~~~l~~l~~~--------g---~~~iivv~~~--~~~~ 83 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKH--LLPV-----GRYPMIYHAVYKLKQC--------D---ITDIMIITGK--EHMG 83 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT--TTHH
T ss_pred CcEEEEECCCCccccccccCCCCce--ecEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEECCh--hhHH
Confidence 46779999999999987 88998 8887 4999999999987652 3 2256777776 2357
Q ss_pred HHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEe
Q 008010 365 RITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQ 444 (581)
Q Consensus 365 ~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~ 444 (581)
.+.++++....||+ +|.+..|. .+.|-|+..... ++.+ +-+++.|.+
T Consensus 84 ~~~~~~~~~~~~~~---~i~~~~~~----------------------~~~G~~~al~~a-----~~~~---~~~~~lv~~ 130 (269)
T 4ecm_A 84 DVVSFLGSGQEFGV---SFTYRVQD----------------------KAGGIAQALGLC-----EDFV---GNDRMVVIL 130 (269)
T ss_dssp HHHHHHTTSGGGTC---EEEEEECS----------------------SCCCHHHHHHTT-----HHHH---TTSEEEEEE
T ss_pred HHHHHHhhccccCc---eEEEeeCC----------------------ccCcHHHHHHHH-----HHhc---CCCcEEEEe
Confidence 78888876555554 23222221 133443322211 2222 147899999
Q ss_pred CCCcccccchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCC
Q 008010 445 VSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNG 524 (581)
Q Consensus 445 vDN~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~ 524 (581)
.|.++.. | +-.++-.....+..+.+.+ .+.. ...+-|++... +|+ + +++.|=+.. + ..
T Consensus 131 ~D~~~~~-~--l~~l~~~~~~~~~~~~~~~-~~~~-~~~~~g~v~~d---~g~----v--~~~~ekp~~-------~-~~ 188 (269)
T 4ecm_A 131 GDNIFSD-D--IRPYVEEFTNQKEGAKVLL-QSVD-DPERFGVANIQ---NRK----I--IEIEEKPKE-------P-KS 188 (269)
T ss_dssp TTEEESS-C--SHHHHHHHHTSSSSEEEEE-EECS-CGGGSEEEEEE---TTE----E--EEEEESCSS-------C-SC
T ss_pred CCccCcc-C--HHHHHHHHHhcCCCeEEEE-EECC-CCCCceEEEEc---CCE----E--EEEEECCCC-------C-CC
Confidence 9997753 2 2234444444444444433 2222 22344554332 454 3 233232210 0 01
Q ss_pred cccccCCccceeEEeHHHHHHh
Q 008010 525 LQADFPANTNILYVDLASAELV 546 (581)
Q Consensus 525 l~S~F~~NiN~l~fsL~~L~~v 546 (581)
+..|+.+.+|+-+.++.+
T Consensus 189 ----~~~~~Giy~~~~~~l~~l 206 (269)
T 4ecm_A 189 ----SYAVTGIYLYDSKVFSYI 206 (269)
T ss_dssp ----SEEEEEEEEECTTHHHHH
T ss_pred ----cEEEEEEEEECHHHHHhh
Confidence 334888999998877544
No 15
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.33 E-value=0.0029 Score=63.33 Aligned_cols=190 Identities=10% Similarity=0.066 Sum_probs=105.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+ .|- ++|+ .||++++..++++... | + -.++|-|. ++.+.
T Consensus 18 ~~~aIIlA~G~stRlp---~K~--L~~i-----~GkPmi~~~l~~l~~~--------~--i-~~IvV~t~-----~~~i~ 71 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKP--LVDI-----NGKPMIVHVLERARES--------G--A-ERIIVATD-----HEDVA 71 (264)
T ss_dssp CCEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEES-----CHHHH
T ss_pred ceEEEEEcCCCCCCCC---Ccc--eeeE-----CCeEHHHHHHHHHHhC--------C--C-CEEEEECC-----HHHHH
Confidence 4678999999999995 477 8777 4999999999987652 2 1 24566663 36777
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++ ||. .+.+-.| ..|.|-|.+..++.. +...+-+++.+.+.|+
T Consensus 72 ~~~~~---~g~---~v~~~~~----------------------~~~~Gt~~i~~~~~~------l~~~~~d~vlv~~gD~ 117 (264)
T 3k8d_A 72 RAVEA---AGG---EVCMTRA----------------------DHQSGTERLAEVVEK------CAFSDDTVIVNVQGDE 117 (264)
T ss_dssp HHHHH---TTC---EEEECCT----------------------TCCSHHHHHHHHHHH------HTCCTTCEEEEECTTC
T ss_pred HHHHH---cCC---EEEEecC----------------------CCCCCHHHHHHHHHH------hccCCCCEEEEEcCCc
Confidence 88875 343 1111001 134566666666532 2123568999999999
Q ss_pred cccccchhhHHHhhhhhhcCCceeEEEEeccCCC----ccc-ceEEEEeecCCCccccceEEEEecccCCCCCCCCC-CC
Q 008010 448 VVAATDLTLLALAGIGLHHGKKLGFASCKRSSGA----TEG-INVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGP-FS 521 (581)
Q Consensus 448 ~Lak~DP~~~~~lG~~~~~~~~~~~~~v~RK~~a----deg-vgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~-~~ 521 (581)
++...+ .+-.++......+..+.+.+ .+-..+ +.+ ++|++. .+|+ + +.+++=+.-...+.. ..
T Consensus 118 Pli~~~-~i~~li~~~~~~~~~~~~~~-~~v~d~~~~~~p~~vkVv~d---~~g~----~--l~fsr~~ip~~r~~~~~~ 186 (264)
T 3k8d_A 118 PMIPAT-IIRQVADNLAQRQVGMATLA-VPIHNAEEAFNPNAVKVVLD---AEGY----A--LYFSRATIPWDRDRFAEG 186 (264)
T ss_dssp TTCCHH-HHHHHHHHHHTSSCSEEEEE-EECCSHHHHTCTTSCEEEEC---TTSB----E--EEEESSCCSCCHHHHHHC
T ss_pred ccCCHH-HHHHHHHHHhhcCCCEEEEE-EEcCCHHHccCCCceEEEEC---CCCe----E--EEEecCCCCCCCcccccc
Confidence 998621 11123333333344444443 222221 122 455433 4665 3 445553310011000 00
Q ss_pred CCCcccccCCccceeEEeHHHHHHhhc
Q 008010 522 SNGLQADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 522 dg~l~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.......|-.|+.+..|+-++|++...
T Consensus 187 ~~~~~~~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 187 LETVGDNFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp SSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred ccccCCcceEEEEEEEECHHHHHHHHh
Confidence 000111144599999999999998754
No 16
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=97.29 E-value=0.003 Score=62.33 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=50.7
Q ss_pred eeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+- ..||- ++|++ |+++++..++++... | .-.++|.|+. ..+.
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~--ll~i~-----gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~~ 61 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKE--MLPIV-----DKPLIQYAVEEAMEA--------G---CEVMAIVTGR---NKRS 61 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGG--GCBSS-----SSBHHHHHHHHHHHH--------T---CCEEEEEECT---THHH
T ss_pred eEEEEECCcCCcccCccccCCCcc--cceEC-----CEEHHHHHHHHHHhC--------C---CCEEEEEecC---CHHH
Confidence 3468999999999987 88998 88874 999999999988663 3 2356778876 6788
Q ss_pred HHHHHHHc
Q 008010 366 ITSLCERL 373 (581)
Q Consensus 366 T~~flekn 373 (581)
+.++|.+.
T Consensus 62 i~~~~~~~ 69 (281)
T 3juk_A 62 LEDYFDTS 69 (281)
T ss_dssp HHHHTSCC
T ss_pred HHHHHhcc
Confidence 88888664
No 17
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=97.27 E-value=0.0014 Score=62.64 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=44.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||| ||- ++|+ .|+++++..++++.+. + ..-.++|.|.. +.+.
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~gkpll~~~l~~~~~~--------~--~~~~ivvv~~~-----~~i~ 58 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKN--LRKM-----NGISLLGHTINAAISS--------K--CFDRIIVSTDG-----GLIA 58 (228)
T ss_dssp EEEEEEECCSSCSSST---TTT--TCEE-----TTEEHHHHHHHHHHHH--------C--CCSEEEEEESC-----HHHH
T ss_pred ceEEEEecCCCCCCCC---Ccc--ccee-----CCcCHHHHHHHHHHhC--------C--CCCEEEEECCC-----HHHH
Confidence 4667999999999999 898 8887 4999999999987663 2 11256666643 4566
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+++++
T Consensus 59 ~~~~~ 63 (228)
T 1ezi_A 59 EEAKN 63 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 18
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=97.24 E-value=0.00077 Score=62.24 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=69.2
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|+. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQ--LLPL-----GDTTLLGATLAMARRC--------P---FDQLIVTLGG---AADEVL 61 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHHTS--------S---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCCCCCC--CCEE--eCEe-----CccCHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 4677999999999999 6888 8887 4999999988877542 2 1256777776 445555
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~G-hGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (581)
+++++ +|. . .+... + .+.| .++++.+|..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~~-----~--------~~~~~-~------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (199)
T 2waw_A 62 EKVEL---DGL-----D--------IVLVD-D------------AGLGCSSSLKSALTWV-------DPTAEGIVLMLGD 105 (199)
T ss_dssp HHSCC---TTS-----E--------EEECC-C------------CCTTCCCHHHHHHHTS-------CTTCSEEEEEETT
T ss_pred HHhcc---CCC-----E--------EEECC-C------------cccCHHHHHHHHHHhh-------hccCCeEEEEeCC
Confidence 55432 222 1 11111 1 1124 46777777542 1256899999999
Q ss_pred Ccccc
Q 008010 447 NVVAA 451 (581)
Q Consensus 447 N~Lak 451 (581)
.++..
T Consensus 106 ~P~~~ 110 (199)
T 2waw_A 106 QPGIT 110 (199)
T ss_dssp CTTCC
T ss_pred cccCC
Confidence 99876
No 19
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.09 E-value=0.0041 Score=65.58 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=75.7
Q ss_pred ceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCC-ccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGR-TLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 288 kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gk-Sllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
.+..|+||||.||||+ ...||. ++|++ |+ ++++..++++.+. | .-.++|.|.. .+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~--llpi~-----g~~pli~~~l~~l~~~--------g---~~~i~vv~~~---~~ 78 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKP--AVPLG-----ANYRLIDIPVSNCLNS--------N---ISKIYVLTQF---NS 78 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGG--GCEET-----TTEETTHHHHHHHHHT--------T---CCEEEEEESC---CC
T ss_pred ceEEEEECCCCCCcccchhcCCcce--eeEEC-----CcceeHHHHHHHHHHC--------C---CCEEEEEecc---CH
Confidence 3667999999999999 678998 88874 88 9999999887652 3 1256888876 56
Q ss_pred HHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcH-HHHHHHhcCchHHHHHcCceEEEE
Q 008010 364 ERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGA-IWKLAHDKGIFKWFHDNGRKGATV 442 (581)
Q Consensus 364 e~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGd-Iy~aL~~sGlLd~l~~~Gikyi~v 442 (581)
+...++|.+. +|.+-. .++.++.+..+..+. .+ .-...+-|.|+ ++.++ +.+...+-+++.|
T Consensus 79 ~~i~~~~~~~--~~~~~~--~~~~~~~v~i~~~~~------~~-~~~~~~~Gt~~al~~a~------~~~~~~~~~~~lv 141 (451)
T 1yp2_A 79 ASLNRHLSRA--YASNMG--GYKNEGFVEVLAAQQ------SP-ENPDWFQGTADAVRQYL------WLFEEHTVLEYLI 141 (451)
T ss_dssp HHHHHHHHHH--CC----------CCEEEEEESCS------ST-TSCCCCCSHHHHHHHTH------HHHTTSCCSEEEE
T ss_pred HHHHHHHhhh--hhcccc--cccccCcEEEecccc------cc-cccccccCcHHHHHHHH------HHHHhcCCCeEEE
Confidence 7888888763 221000 011233333332110 00 00011335433 23322 3333335689999
Q ss_pred EeCCCcccccchhhHHHhhhhhhcCCceeEE
Q 008010 443 RQVSNVVAATDLTLLALAGIGLHHGKKLGFA 473 (581)
Q Consensus 443 ~~vDN~Lak~DP~~~~~lG~~~~~~~~~~~~ 473 (581)
.+.|.+ ...| +-.++..+...+..+.+.
T Consensus 142 ~~~D~~-~~~~--l~~l~~~~~~~~~~~tl~ 169 (451)
T 1yp2_A 142 LAGDHL-YRMD--YEKFIQAHRETDADITVA 169 (451)
T ss_dssp ECSCEE-CCCC--HHHHHHHHHHTTCSEEEE
T ss_pred ecCcEE-EcCC--HHHHHHHHHHcCCcEEEE
Confidence 999994 3333 334555554455544443
No 20
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=97.07 E-value=0.0019 Score=62.95 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=43.8
Q ss_pred ceeEEEecCCCcCCCCC-CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 288 ELGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~-~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
.+..|+||||.|||||. +.||- ++|+ .|+++++..++++.+. + ..-.++|.|+. +-.+..
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~--l~~l-----~Gkpll~~~l~~~~~~--------~--~~~~ivvv~~~--~~~~~~ 63 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQ--FLPL-----NGKPIIVHTVEKFILN--------T--RFDKILISSPK--EWMNHA 63 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGG--GSEE-----TTEEHHHHHHHHHHTC--------T--TCSEEEEEECG--GGHHHH
T ss_pred ccEEEEECCccccccCCCCCCCe--EEEE-----CCeeHHHHHHHHHHcC--------C--CCCEEEEEeCH--HHHHHH
Confidence 46789999999999998 77998 8887 4999999998877542 1 12356777776 233456
Q ss_pred HHHHHHcC
Q 008010 367 TSLCERLR 374 (581)
Q Consensus 367 ~~flekn~ 374 (581)
.+.++++.
T Consensus 64 ~~~~~~~~ 71 (246)
T 3f1c_A 64 EDNIKKYI 71 (246)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 67777653
No 21
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=97.00 E-value=0.0046 Score=59.33 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=67.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||| ||- ++|+ .|+++++..++++.+. | +.-.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~--l~~i-----~g~pli~~~i~~~~~~--------~--~~~~ivvv~~~-----~~i~ 56 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKP--LLDI-----VGKPMIQHVYERALQV--------A--GVAEVWVATDD-----PRVE 56 (245)
T ss_dssp CEEEEEECCSCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHTC--------T--TCCEEEEEESC-----HHHH
T ss_pred CeEEEEEcCCcCCCCC---CCc--cccc-----CCchHHHHHHHHHHhC--------C--CCCeEEEECCc-----HHHH
Confidence 3667999999999997 998 8887 4999999988877552 2 11256666643 6777
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++. |. . ++... ...+.|-++++.++.. -+-+++.+.+.|.
T Consensus 57 ~~~~~~---~~-----~--------~~~~~------------~~~~~g~~~~~~~~~~---------~~~~~~lv~~~D~ 99 (245)
T 1h7e_A 57 QAVQAF---GG-----K--------AIMTR------------NDHESGTDRLVEVMHK---------VEADIYINLQGDE 99 (245)
T ss_dssp HHHHHT---TC-----E--------EEECC------------SCCSSHHHHHHHHHHH---------SCCSEEEECCTTC
T ss_pred HHHHHc---CC-----e--------EEeCC------------CccCCcHHHHHHHHHh---------CCCCEEEEEcCCc
Confidence 787763 32 1 11110 0123455566655542 1457999999999
Q ss_pred cccc
Q 008010 448 VVAA 451 (581)
Q Consensus 448 ~Lak 451 (581)
++..
T Consensus 100 P~~~ 103 (245)
T 1h7e_A 100 PMIR 103 (245)
T ss_dssp TTCC
T ss_pred CcCC
Confidence 9876
No 22
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=96.93 E-value=0.0096 Score=62.34 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=50.2
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.|||||-..||. ++|+ .|+++++..++++.+. | .-.++|.|.. .++.+.
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~~~~i~ 66 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKV--LHPL-----AGKPMVQHVIDAAMKL--------G---AQHVHLVYGH---GGELLK 66 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHHH--------T---CSCEEEEESS---CHHHHH
T ss_pred cceEEEECCCCCccCCCCCCcc--cCee-----CCeeHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 5788999999999999888998 8887 4999999999987663 2 2357788886 467777
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+++++
T Consensus 67 ~~~~~ 71 (459)
T 4fce_A 67 KTLAD 71 (459)
T ss_dssp HHC--
T ss_pred HHhcc
Confidence 77764
No 23
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=96.92 E-value=0.013 Score=58.19 Aligned_cols=186 Identities=11% Similarity=0.090 Sum_probs=99.1
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHH-HHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLI-RDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~-e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
..|++|||.||||+ +|- ++|+ .||++++..+ +++.+ .| + -.++|-|. ++.+.+
T Consensus 3 ~aiIlA~G~stR~~---~K~--L~~i-----~GkPli~~~i~~~~~~--------~~--~-~~vvVvt~-----~~~i~~ 56 (253)
T 4fcu_A 3 HIVIPARFSSSRLP---GKP--LLLI-----HDRPMILRVVDQAKKV--------EG--F-DDLCVATD-----DERIAE 56 (253)
T ss_dssp EEEEECCSCCTTST---TGG--GSEE-----TTEEHHHHHHHHHHTC--------TT--C-CEEEEEES-----CHHHHH
T ss_pred EEEEEeCCCCCCCC---CCc--eeeE-----CCeEhHHHHHHHHHHh--------cC--C-CEEEEECC-----HHHHHH
Confidence 46899999999998 477 8777 4999999988 76543 12 1 23456563 367777
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++++ ||. ++.+ ... ..+.|-+.++.++. .+...+..++.+.+.|++
T Consensus 57 ~~~~---~g~---~v~~---------~~~-------------~~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~P 102 (253)
T 4fcu_A 57 ICRA---EGV---DVVL---------TSA-------------DHPSGTDRLSEVAR------IKGWDADDIIVNVQGDEP 102 (253)
T ss_dssp HHHT---TTC---CEEE---------CCT-------------TCCCHHHHHHHHHH------HHTCCTTCEEEECCTTCT
T ss_pred HHHH---cCC---eEEE---------eCC-------------CCCChHHHHHHHHH------hcCcCCCCEEEEEeCCcc
Confidence 7764 343 1110 000 01334444555543 222235689999999999
Q ss_pred ccccchhhHHHhhhhhhc-CCceeEEEEec-----cCCCcccceEEEEeecCCCccccceEEEEecc--cCCCCCCCCCC
Q 008010 449 VAATDLTLLALAGIGLHH-GKKLGFASCKR-----SSGATEGINVLIEKKNLDGKWAYGLSCIEYTE--FDKFGITRGPF 520 (581)
Q Consensus 449 Lak~DP~~~~~lG~~~~~-~~~~~~~~v~R-----K~~adegvgvLv~k~~~dGke~~gv~~VEYsE--l~~~~~~~~~~ 520 (581)
+...+ .+-.++...... +..+....++- -.++. +++|++. .+|+ +. -+++ ++.. .+...
T Consensus 103 li~~~-~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~-~~kvv~d---~~g~----~l--~fsr~~ip~~--r~~~~ 169 (253)
T 4fcu_A 103 LLPAQ-LVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDS-IVKVVMS---KQNE----AL--YFSRATIPYD--RDGAK 169 (253)
T ss_dssp TCCHH-HHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTT-SCEEEEC---TTSB----EE--EEESSCCSCC--TTTSS
T ss_pred cCCHH-HHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCC-ccEEEEC---CCCe----EE--EecCCCCCCC--CCccc
Confidence 98621 111233333332 22333332221 12222 2566443 4666 32 2333 4331 11110
Q ss_pred CCCCc-ccccCCccceeEEeHHHHHHhhc
Q 008010 521 SSNGL-QADFPANTNILYVDLASAELVGS 548 (581)
Q Consensus 521 ~dg~l-~S~F~~NiN~l~fsL~~L~~v~~ 548 (581)
.+... -..|-.|+.+..|+-++|++...
T Consensus 170 ~~~~~~~~~~~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 170 RDEPTLHTQAFRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp SSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred ccccccccceeEEEEEEEeCHHHHHHHHh
Confidence 00000 01133488999999999999864
No 24
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=96.89 E-value=0.0073 Score=57.97 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=66.5
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||+ +|- ++|+ .|+++++..++++.+. | ..-.++|-|. ++.+.
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~--l~~i-----~Gkpli~~~i~~~~~~--------~--~~~~ivv~~~-----~~~i~ 57 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKN--IKRL-----AGVPLIGWVLRAALDA--------G--VFQSVWVSTD-----HDEIE 57 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTT--TSEE-----TTEEHHHHHHHHHHHH--------T--CCSEEEEEES-----CHHHH
T ss_pred cEEEEEEcCCCCCCCC---Ccc--cceE-----CCEEHHHHHHHHHHhC--------C--CcCEEEEECC-----hHHHH
Confidence 4677999999999996 487 8887 4999999999988763 2 1124556553 35677
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++. |. .++.+. + .+ ....+.|.+.+..+|..- .+-+++.+.+.|+
T Consensus 58 ~~~~~~---g~-----~~~~~~-------~--~~-------~~~~~~~~~~v~~al~~~--------~~~d~vlv~~~D~ 105 (229)
T 1qwj_A 58 NVAKQF---GA-----QVHRRS-------S--ET-------SKDSSTSLDAIVEFLNYH--------NEVDIVGNIQATS 105 (229)
T ss_dssp HHHHHT---TC-----EEEECC-------G--GG-------SSTTCCHHHHHHHHHTTC--------TTCSEEEEECTTC
T ss_pred HHHHHc---CC-----EEEeCh-------h--hh-------cCCCCcHHHHHHHHHHhc--------CCCCEEEEecCCC
Confidence 777652 32 122211 0 00 001122334455555331 2568999999999
Q ss_pred cccc
Q 008010 448 VVAA 451 (581)
Q Consensus 448 ~Lak 451 (581)
++..
T Consensus 106 Pli~ 109 (229)
T 1qwj_A 106 PCLH 109 (229)
T ss_dssp TTCC
T ss_pred CcCC
Confidence 9986
No 25
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=96.65 E-value=0.0015 Score=63.22 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=45.8
Q ss_pred eeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+- ..||- ++|++ |+++++..++++.+. | .-.++|.|+. .++.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~--l~~i~-----gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~~ 61 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKP--MVEIG-----GKPILWHIMKMYSVH--------G---IKDFIICCGY---KGYV 61 (259)
T ss_dssp CEEEEEECSCC--------CCCGG--GCEET-----TEEHHHHHHHHHHHT--------T---CCEEEEEECT---THHH
T ss_pred cEEEEECCCCcccCCCccCCCCcc--ccEEC-----CEEHHHHHHHHHHHC--------C---CCEEEEEccc---CHHH
Confidence 4568899999999986 66998 88874 999999988877652 3 2357888887 5688
Q ss_pred HHHHHHHc
Q 008010 366 ITSLCERL 373 (581)
Q Consensus 366 T~~flekn 373 (581)
+++++.+.
T Consensus 62 i~~~~~~~ 69 (259)
T 1tzf_A 62 IKEYFANY 69 (259)
T ss_dssp HHHHHHTH
T ss_pred HHHHHhhc
Confidence 89999864
No 26
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=96.59 E-value=0.0016 Score=60.07 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=66.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||| .||. ++|+ .|+++++..++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~--l~~~-----~g~pll~~~l~~l~~~--------~---~~~i~vv~~~---~~~~~~ 61 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQ--LLPY-----RDTTVLGATLDVARQA--------G---FDQLILTLGG---AASAVR 61 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSEEEEEECT---THHHHH
T ss_pred ceEEEEECCCCcccCC--CCeE--cCee-----CCccHHHHHHHHHHhc--------C---CCcEEEEeCC---CHHHHH
Confidence 4677999999999998 7888 8887 4999999998877652 2 1256777776 355555
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCC-CcHHHHHHHhcCchHHHHHcCceEEEEEeCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGG-HGAIWKLAHDKGIFKWFHDNGRKGATVRQVS 446 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~G-hGdIy~aL~~sGlLd~l~~~Gikyi~v~~vD 446 (581)
+++++ +|+ .+ +... + .+.| .++++.++..- ..+.+++.|...|
T Consensus 62 ~~~~~---~~~-----~~--------~~~~-~------------~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D 105 (197)
T 2wee_A 62 AAMAL---DGT-----DV--------VVVE-D------------VERGCAASLRVALARV-------HPRATGIVLMLGD 105 (197)
T ss_dssp HHSCC---TTS-----EE--------EECC-----------------CCHHHHHHHHTTS-------CTTEEEEEEEETT
T ss_pred HHhcc---CCC-----EE--------EECC-C------------cccCHHHHHHHHHHHh-------cccCCeEEEEeCC
Confidence 44432 221 11 1111 0 0113 24566666431 1256899999999
Q ss_pred Ccccc
Q 008010 447 NVVAA 451 (581)
Q Consensus 447 N~Lak 451 (581)
.++..
T Consensus 106 ~P~~~ 110 (197)
T 2wee_A 106 QPQVA 110 (197)
T ss_dssp CTTCC
T ss_pred cCCCC
Confidence 99876
No 27
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=96.49 E-value=0.0014 Score=61.82 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=41.8
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
++..|+||||.|||||...||. ++|+ .|+++++..++++.+. + ..-.++|.|+.
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~--l~~~-----~g~pli~~~l~~l~~~--------~--~~~~i~vv~~~ 55 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKA--FVTL-----GGTPLLEHALSGLRAS--------G--VIDRIVIAVPP 55 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGG--GSEE-----TTEEHHHHHHHHHHHH--------S--CCSEEEEEECG
T ss_pred ceEEEEECCccCcccCCCCCCe--eeEE-----CCeEHHHHHHHHHhcC--------C--CCCeEEEEEcc
Confidence 3567999999999999777998 8887 4999999999888663 2 01256777776
No 28
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=96.41 E-value=0.0015 Score=62.14 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=35.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
++..|+||||.|||||.+.||. ++|+ .|+++++..++++.+.. | .-.++|.|..
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~ivvv~~~ 57 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQ--YIPL-----LGQPIALYSFFTFSRMP-------E---VKEIVVVCDP 57 (228)
T ss_dssp CEEEEEECCCCC-------CGG--GSEE-----TTEEHHHHHHHHHHHCT-------T---EEEEEEECCG
T ss_pred ceEEEEECCccccccCCCCCcc--EeEE-----CCEEHHHHHHHHHHcCC-------C---CCeEEEEECh
Confidence 5678999999999999777998 8887 49999999988776521 1 1256777776
No 29
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=96.39 E-value=0.0015 Score=62.32 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
-+..|+||||.|||||.+.||. ++|+ .|+++++..++++.+. + ..-.++|-|..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~--l~~i-----~Gkpli~~~i~~l~~~--------~--~~~~ivVv~~~ 66 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQ--FLEI-----EGRMLFEYPLSTFLKS--------E--AIDGVVIVTRR 66 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GCEE-----TTEETTHHHHHHHHHC--------T--TCSEEEEEECG
T ss_pred cCeEEEEcCcchhhcCCCCCce--EEEE-----CCeEHHHHHHHHHHcC--------C--CCCeEEEEECh
Confidence 3677999999999999777998 8887 4999999999887652 1 11256777765
No 30
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=96.37 E-value=0.0029 Score=62.03 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=47.9
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.++.|+||||.|||||...||- .+++ .|+++++..++++.+. + ..-.++|.|+. +..+...
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~--l~~l-----~Gkpll~~~l~~~~~~--------~--~~~~ivVv~~~--~~~~~~~ 67 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKA--FYQL-----DGQTLIERAVDGLLDS--------G--VVDTVVVAVPA--DRTDEAR 67 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------S--CCCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCCccCCCCCCce--EEEE-----CCeEHHHHHHHHHHhC--------C--CCCeEEEECCh--HHHHHHH
Confidence 5788999999999999988998 8887 4999999999987653 1 12256777776 2335555
Q ss_pred HHHH
Q 008010 368 SLCE 371 (581)
Q Consensus 368 ~fle 371 (581)
+++.
T Consensus 68 ~~~~ 71 (231)
T 3q80_A 68 QILG 71 (231)
T ss_dssp HHHG
T ss_pred HHhc
Confidence 5543
No 31
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=96.36 E-value=0.0016 Score=62.40 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=41.8
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
++..|+||||.|||||...||. ++|+ .|+++++..++++... + ..-.++|.|..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~--l~~i-----~g~pll~~~i~~l~~~--------~--~~~~ivvv~~~ 60 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQ--YLSI-----GNQTILEHSVHALLAH--------P--RVKRVVIAISP 60 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTS--------T--TEEEEEEEECT
T ss_pred ceeEEEECCcCccccCCCCCcc--eeeE-----CCEEHHHHHHHHHHhC--------C--CCCeEEEEeCc
Confidence 5778999999999999777998 8887 4999999998877652 1 12256777765
No 32
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=96.34 E-value=0.0029 Score=63.86 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=50.1
Q ss_pred eeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+ ...||. ++|+ .||++++..++.+... | + -.++|.|+.. ..+.
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g--i-~~I~vv~~~~--~~~~ 62 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQ--LLPV-----YDKPMIYYPLSTLMLA--------G--I-REILIISTPQ--DTPR 62 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGG--GSEE-----TTEETTHHHHHHHHHT--------T--C-CEEEEEECTT--THHH
T ss_pred ceEEEECCCCCCcCccccCCCCce--eCeE-----CCEeHHHHHHHHHHHC--------C--C-CEEEEEeccc--cHHH
Confidence 456889999999998 467888 8887 4899999999877542 3 1 2355666552 5677
Q ss_pred HHHHHHHcCCCCC
Q 008010 366 ITSLCERLRWFGR 378 (581)
Q Consensus 366 T~~flekn~yFGl 378 (581)
.++++.+...||+
T Consensus 63 i~~~l~~g~~~g~ 75 (293)
T 1fxo_A 63 FQQLLGDGSNWGL 75 (293)
T ss_dssp HHHHHTTSGGGTC
T ss_pred HHHHHhcccccCc
Confidence 8888876444554
No 33
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=96.33 E-value=0.0041 Score=62.92 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=50.3
Q ss_pred eeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+ ...||- ++|+ .||++++..++.+... | + -.++|.|+.. ..+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g--i-~~Iivv~~~~--~~~~ 63 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQ--LLPI-----YDKPMIYYPLSVLMLA--------G--I-RDILIISTPR--DLPL 63 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGG--GSEE-----TTEETTHHHHHHHHHT--------T--C-CEEEEEECTT--THHH
T ss_pred eEEEEECCCCCCccccccCCCCce--ecEE-----CCeeHHHHHHHHHHHC--------C--C-CeEEEEeccc--hHHH
Confidence 456899999999999 567898 8887 4899999999877642 3 1 2456666642 5677
Q ss_pred HHHHHHHcCCCCC
Q 008010 366 ITSLCERLRWFGR 378 (581)
Q Consensus 366 T~~flekn~yFGl 378 (581)
.++++.+...||+
T Consensus 64 i~~~l~~g~~~g~ 76 (295)
T 1lvw_A 64 YRDLLGDGSQFGV 76 (295)
T ss_dssp HHHHHTTSGGGTS
T ss_pred HHHHhhhccccCc
Confidence 7888876444554
No 34
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0022 Score=59.69 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=45.2
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHH
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSL 369 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~f 369 (581)
..|+||||.|||||- .||- ++|+ .|+++++..++++.+. | .-.++|.|+. .++.+.++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~--l~~~-----~g~pli~~~l~~l~~~--------~---~~~v~vv~~~---~~~~i~~~ 59 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKP--LIKL-----CGRCLIDYVVSPLLKS--------K---VNNIFIATSP---NTPKTKEY 59 (196)
T ss_dssp EEEEEC----CGGGG-SCGG--GCEE-----TTEEHHHHHHHHHHSS--------S---CCCEEEECCT---TCHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCcc--EEEE-----CCEEHHHHHHHHHHHC--------C---CCEEEEEeCC---ChHHHHHH
Confidence 358999999999987 7888 8887 4999999999877542 2 2367888887 47888999
Q ss_pred HHHc
Q 008010 370 CERL 373 (581)
Q Consensus 370 lekn 373 (581)
+++.
T Consensus 60 ~~~~ 63 (196)
T 3rsb_A 60 INSA 63 (196)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9884
No 35
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=96.29 E-value=0.0079 Score=60.73 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=57.7
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.|||||- ||- ++|+| | .|+++++..++++... | .-.++|.|.. ...+...
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~--l~~ig--~-~g~pli~~~l~~~~~~--------~---~~~i~vv~~~--~~~~~~~ 64 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQ--LDGIG--P-GGDTIMDYSVYDAIRA--------G---FGRLVFVIRH--SFEKEFR 64 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCC--CCCCS--T-TSCCHHHHHHHHHHHH--------T---CCEEEEEECG--GGHHHHH
T ss_pred ceEEEEECCCCcccCCC--Cce--EeEcC--C-CCeeHHHHHHHHHHHC--------C---CCeEEEEcCc--hHHHHHH
Confidence 45678999999999996 888 88873 2 3899999999987653 3 2356777876 2358888
Q ss_pred HHHHHcCCCCCCCCceEEEecC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQP 389 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~ 389 (581)
++|.....++. +|.+..|+
T Consensus 65 ~~~~~~~~~~~---~i~~~~~~ 83 (303)
T 3pnn_A 65 EKILTKYEGRI---PVELVFQE 83 (303)
T ss_dssp HHTHHHHTTTS---CEEEEECC
T ss_pred HHHHHHhccCC---cEEEEecc
Confidence 89886544443 57777776
No 36
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=96.29 E-value=0.0019 Score=61.42 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=37.6
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.|||||...||. ++|+ .|+++++..++++.+. + ..-.++|.|+. .++.+.
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~--l~~~-----~gkpli~~~l~~l~~~--------~--~~~~ivvv~~~---~~~~~~ 65 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQ--YVEI-----GSKTVLEHVLGIFERH--------E--AVDLTVVVVSP---EDTFAD 65 (231)
T ss_dssp CEEEEEECC----------CCS--CCEE-----TTEEHHHHHHHHHHTC--------T--TCCEEEEECCT---TCSTHH
T ss_pred ceEEEEEcccccccCCCCCCce--EeEE-----CCeEHHHHHHHHHHcC--------C--CCCeEEEEECc---cHHHHH
Confidence 4678999999999999767998 8887 4999999998877652 1 11256777876 234555
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+ +.+
T Consensus 66 ~-~~~ 69 (231)
T 1vgw_A 66 K-VQT 69 (231)
T ss_dssp H-HHH
T ss_pred H-HHh
Confidence 5 554
No 37
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=96.28 E-value=0.052 Score=57.11 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=43.7
Q ss_pred EEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHHHH
Q 008010 291 EIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLC 370 (581)
Q Consensus 291 ~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~fl 370 (581)
.|+||||.||||+...||- ++|+ .|+++++..++++.+. | .-.++|.|.. ..+...+++
T Consensus 14 ~vIlAaG~g~R~~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~iivv~~~---~~~~i~~~~ 72 (468)
T 1hm9_A 14 AIILAAGKGTRMKSDLPKV--LHKV-----AGISMLEHVFRSVGAI--------Q---PEKTVTVVGH---KAELVEEVL 72 (468)
T ss_dssp EEEECCCCCGGGCCSSCGG--GSEE-----TTEEHHHHHHHHHHTT--------C---CSEEEEEECT---THHHHHHSS
T ss_pred EEEEcCCCCccCCCCCCcE--eeEE-----CCccHHHHHHHHHHhc--------C---CCCEEEEECC---CHHHHHHHh
Confidence 4899999999999778998 8887 4999999998877542 3 2356777776 345554443
No 38
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=96.26 E-value=0.0033 Score=63.61 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=50.8
Q ss_pred eeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+ ...||- ++|+ .||++++..++.+... | + -.++|.|+.. ..+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~--llpi-----~gkpli~~~l~~l~~~--------g--i-~~I~vv~~~~--~~~~ 63 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQ--LLPI-----YDKPMIYYPLSVLMLA--------G--I-REILIITTPE--DKGY 63 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGG--GSEE-----TTEETTHHHHHHHHHT--------T--C-CEEEEEECTT--THHH
T ss_pred cEEEEECCCCCCcCCcccCCCCce--eeEE-----CCeeHHHHHHHHHHhC--------C--C-CcEEEEechh--HHHH
Confidence 456899999999998 678998 8887 4899999998877541 3 1 2456666642 5677
Q ss_pred HHHHHHHcCCCCC
Q 008010 366 ITSLCERLRWFGR 378 (581)
Q Consensus 366 T~~flekn~yFGl 378 (581)
.++++.+...||+
T Consensus 64 i~~~l~~g~~~g~ 76 (296)
T 1mc3_A 64 FQRLLGDGSEFGI 76 (296)
T ss_dssp HHHHHTTSGGGTC
T ss_pred HHHHHhcccccCc
Confidence 7888876444554
No 39
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.0026 Score=59.93 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
+..|+||||.|||||. ||. ++|+ .|+++++..++++.. . .++|.|+.
T Consensus 3 ~~~iIlAgG~g~Rmg~--~K~--l~~i-----~g~pll~~~l~~l~~------------~--~ivvv~~~ 49 (197)
T 3d5n_A 3 IGVIILAAGEGKRFGG--DKL--LAKI-----DNTPIIMRTIRIYGD------------L--EKIIIVGK 49 (197)
T ss_dssp EEEEEECSCCTTCCCS--SGG--GSBS-----SSSBHHHHHHHHTTT------------S--BCCEEECT
T ss_pred eEEEEECCcCcccCCC--Cee--eCEe-----CceEHHHHHHHHHHh------------C--CEEEEECC
Confidence 5679999999999995 898 8887 499999988876543 1 56777776
No 40
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=96.13 E-value=0.0045 Score=58.70 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred eeEEEecCCCcCCCCC-CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 289 LGEIYPLGGSADRLGL-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~-~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
+..|+||||.|||||- ..||. ++|+ .|+++++..++++.+.. + .-.++|.|.. ...+...
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~--l~~i-----~g~pli~~~l~~l~~~~-------~---~~~i~vv~~~--~~~~~~~ 63 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQ--FLEL-----GDRPILIHTIEKFVLEP-------S---IEKIVVGVHG--DWVSHAE 63 (236)
T ss_dssp EEEEEEEC-----------CGG--GSEE-----TTEEHHHHHHHHHHTCT-------T---CCCEEEEECG--GGHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCe--eeee-----CCccHHHHHHHHHHcCC-------C---CCeEEEEeCH--HHHHHHH
Confidence 4568999999999995 56898 8887 49999999988775521 1 1256777876 2336678
Q ss_pred HHHHHc
Q 008010 368 SLCERL 373 (581)
Q Consensus 368 ~flekn 373 (581)
+++++.
T Consensus 64 ~~~~~~ 69 (236)
T 2vsh_A 64 DLVDKY 69 (236)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888763
No 41
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=96.06 E-value=0.0034 Score=59.54 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=34.0
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
++..|+||||.|+||| ..||. ++|+ .|+++++..++++..
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~--ll~i-----~G~pli~~~l~~l~~ 45 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKG--LLEL-----NGKPLWQHVADALMT 45 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGG--GSEE-----TTEEHHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCc--eeeE-----CceeHHHHHHHHHHh
Confidence 5778999999999999 57888 8887 499999999988763
No 42
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=95.98 E-value=0.0034 Score=60.83 Aligned_cols=37 Identities=35% Similarity=0.456 Sum_probs=25.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRD 332 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~ 332 (581)
+++.|+||||.|||||.. ||. ++|+ .|+++++..+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~--l~~i-----~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKA--FLQV-----GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGG--GCBC-----SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCe--EEEE-----CCEEHHHHHHHh
Confidence 466799999999999976 998 8887 499999998886
No 43
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=95.94 E-value=0.0076 Score=60.84 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=42.1
Q ss_pred ceeEEEecCCCcCCCC---C-CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCch
Q 008010 288 ELGEIYPLGGSADRLG---L-VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNH 363 (581)
Q Consensus 288 kia~VlLAGGqGTRLG---~-~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~Th 363 (581)
++..|+||||.||||+ . ..||. ++|++ .|+++++..++++... .-.++|.|.. ...
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~--ll~i~----gg~pli~~~l~~l~~~------------~~~i~vv~~~--~~~ 63 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQ--FLKLF----DHKSLFELSFKRNASL------------VDETLIVCNE--KHY 63 (308)
T ss_dssp CEEEEEECC-------------CCGG--GCTTB----TTBCHHHHHHHHHHTT------------CSEEEEEEEG--GGH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCE--EEECC----CCCCHHHHHHHHHHcc------------CCCEEEEECh--hHH
Confidence 3567899999999995 2 57998 88872 3899999998877552 1256788876 234
Q ss_pred HHHHHHHHHcCCCCC
Q 008010 364 ERITSLCERLRWFGR 378 (581)
Q Consensus 364 e~T~~flekn~yFGl 378 (581)
+.+.+++++. ||+
T Consensus 64 ~~i~~~~~~~--~~~ 76 (308)
T 2qh5_A 64 FLALEEIKNE--IKN 76 (308)
T ss_dssp HHHHHHTTTT--CSS
T ss_pred HHHHHHHHHh--hCC
Confidence 6777777653 454
No 44
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=95.87 E-value=0.0073 Score=63.18 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=48.5
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.|||||...||. ++|+ .|+++++..++++... | .-.++|.|.. ..+...
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------~---~~~iivv~~~---~~~~i~ 63 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKV--LHTI-----AGKPMVKHVIDTAHQL--------G---SENIHLIYGH---GGDLMR 63 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGG--GSEE-----TTEEHHHHHHHHHHHT--------T---CSCEEEEECT---THHHHH
T ss_pred cceEEEECCCCCcccCCCCCcc--ccEE-----CCccHHHHHHHHHHhC--------C---CCcEEEEeCC---CHHHHH
Confidence 4677999999999999778998 8887 4999999999987652 2 1246777776 456666
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+++.+
T Consensus 64 ~~~~~ 68 (456)
T 2v0h_A 64 THLAN 68 (456)
T ss_dssp HHTTT
T ss_pred HHhhc
Confidence 66654
No 45
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.0044 Score=59.66 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=36.8
Q ss_pred eEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 290 GEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 290 a~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
..|+||||.|+||| .||. ++++ .|+++++..++++.. . +++|.|..
T Consensus 2 ~aiILAgG~s~Rmg--~~K~--ll~~-----~G~pli~~~~~~l~~------------~--~vvvv~~~ 47 (208)
T 3ngw_A 2 KVAVLVGGVGRRIG--MEKT--EVML-----CGKKLIEWVLEKYSP------------F--QTVFVCRD 47 (208)
T ss_dssp EEEEECCCCCTTTT--SCGG--GCEE-----TTEEHHHHHHHHHTT------------S--EEEEECSS
T ss_pred EEEEECCCchhhCC--CCCc--ccEE-----CCeeHHHHHHHHhcC------------C--CEEEEECC
Confidence 56899999999999 7898 8876 499999988886643 2 67777753
No 46
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=95.71 E-value=0.0046 Score=58.80 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=64.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
++..|+||||.||||| ||. ++|+ .|+++++..++++... . -.++|.|.. +.+.
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~--l~~i-----~g~pli~~~l~~~~~~-------~-----~~i~v~~~~-----~~i~ 54 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKP--LKNL-----LGKPLIRWVVEGLVKT-------G-----ERVILATDS-----ERVK 54 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGG--GCEE-----TTEEHHHHHHHHHHTT-------T-----SCEEEEESC-----HHHH
T ss_pred ceEEEEEcCCCCCCCC---CCc--ceeE-----CCEEHHHHHHHHHHHh-------C-----CEEEEECCh-----HHHH
Confidence 3567999999999999 998 8887 4999999998877542 1 134555543 5566
Q ss_pred HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCC
Q 008010 368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSN 447 (581)
Q Consensus 368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN 447 (581)
+++++. . .+ +. ..+ ..+.|-|+++.++.. -+-+++.+.+.|.
T Consensus 55 ~~~~~~----~---~~--~~-------~~~-------------~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~ 96 (234)
T 2y6p_A 55 EVVEDL----C---EV--FL-------TPS-------------DLPSGSDRVLYVVRD---------LDVDLIINYQGDE 96 (234)
T ss_dssp HHHTTT----S---EE--EE-------CCT-------------TCCSHHHHHHHHHTT---------CCCSEEEECCTTC
T ss_pred HHHHhc----e---EE--EE-------CCc-------------ccccchHHHHHHHHh---------CCCCEEEEecCCc
Confidence 666531 1 11 10 001 124566666655432 1457999999999
Q ss_pred cccc
Q 008010 448 VVAA 451 (581)
Q Consensus 448 ~Lak 451 (581)
++..
T Consensus 97 P~~~ 100 (234)
T 2y6p_A 97 PFVY 100 (234)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 8876
No 47
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=95.46 E-value=0.0065 Score=59.67 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=46.0
Q ss_pred ceeEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
++..|+||||.||||+ ...||. ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~--l~~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~ 83 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKA--LVQV-----NQKPLIEYQIEFLKEK--------G---INDIIIIVGY---LKE 83 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCCEEEEECT---TGG
T ss_pred CceEEEECCCCcccCCcccCCCCCE--EeeE-----CCEEHHHHHHHHHHHC--------C---CCeEEEEeCC---cHH
Confidence 4667999999999998 577998 8887 4999999999887652 3 1245777765 344
Q ss_pred HHHHHHH
Q 008010 365 RITSLCE 371 (581)
Q Consensus 365 ~T~~fle 371 (581)
....+.+
T Consensus 84 ~i~~~~~ 90 (254)
T 1jyk_A 84 QFDYLKE 90 (254)
T ss_dssp GGTHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 48
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=95.27 E-value=0.014 Score=58.25 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=48.6
Q ss_pred ceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
.+..|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---i~~i~vv~~~---~~~ 66 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKE--MLPL-----VDKPLIQYVVNECIAA--------G---ITEIVLVTHS---SKN 66 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG---GGH
T ss_pred ccEEEEECCcCcccCCccccCCCce--eeEE-----CCeEHHHHHHHHHHHC--------C---CCEEEEEeCC---CHH
Confidence 35568999999999985 56888 8887 4899999999887652 3 1246777876 567
Q ss_pred HHHHHHHH
Q 008010 365 RITSLCER 372 (581)
Q Consensus 365 ~T~~flek 372 (581)
.+.+++.+
T Consensus 67 ~i~~~~~~ 74 (302)
T 2e3d_A 67 SIENHFDT 74 (302)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 88888764
No 49
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=95.25 E-value=0.007 Score=57.94 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=28.7
Q ss_pred cCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 286 LPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 286 L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+..+..|+||||.|||||-. ||. ++|+ .|+++++..++++..
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~--l~~i-----~g~pli~~~l~~l~~ 57 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKP--LVRV-----GGCEIILRTMKLLSP 57 (232)
T ss_dssp CCCEEEEEEECC------CC-CGG--GCEE-----TTEEHHHHHHHHHGG
T ss_pred cccceEEEECCcCcCcCCCC-CcE--EeEE-----CCEEHHHHHHHHHHH
Confidence 45678899999999999754 998 8887 499999998887644
No 50
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=95.16 E-value=0.003 Score=59.74 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=39.0
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCC
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSS 358 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~ 358 (581)
++..|+||||.||||| .||. ++|+ .|+++++..++++... .-.++|.|..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~--ll~i-----~g~pll~~~l~~l~~~------------~~~i~vv~~~ 63 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKL--LYEI-----KGKKVIERVYETAKSV------------FKEVYIVAKD 63 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHH--HHHH-----HHHHHHHHHHHHHHTT------------CSEEEEEESC
T ss_pred CceEEEECCCCCccCC--CCcc--cceE-----CceEHHHHHHHHHHHh------------CCEEEEEeCc
Confidence 4677999999999999 7888 8887 3899999988876541 1256777776
No 51
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=95.14 E-value=0.0044 Score=61.15 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=42.6
Q ss_pred EEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010 291 EIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT 367 (581)
Q Consensus 291 ~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~ 367 (581)
.|+||||.||||+ .+-||- ++|++ |+++++..++++... .| .-.++|.|.. .++ +.
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~--llpv~-----gkpli~~~l~~l~~~-------~g---i~~iivv~~~---~~~-~~ 60 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKY--MLEAH-----GQTLFEHSVNSFAAY-------FA---STPFLFIVRN---VYD-TA 60 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGG--GCEET-----TEEHHHHHHGGGGGG-------TT---TSCEEEEEES---STT-HH
T ss_pred EEEEcCCCCcccccCCCCCCcc--ccEEC-----CeEHHHHHHHHHhcc-------CC---CceEEEEECc---hhh-hH
Confidence 4789999999985 477999 98884 999999998876541 23 1245566665 233 55
Q ss_pred HHHHH
Q 008010 368 SLCER 372 (581)
Q Consensus 368 ~flek 372 (581)
+++++
T Consensus 61 ~~~~~ 65 (255)
T 4evw_A 61 VFVRE 65 (255)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 52
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=95.05 E-value=0.016 Score=57.83 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=48.0
Q ss_pred ceeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 288 ELGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
.+..|+||||.||||+- ..||- ++|+ .|+++++..++++... | .-.++|.|.. ..+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~--ll~i-----~gkpli~~~l~~l~~~--------g---~~~i~vv~~~---~~~ 72 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKE--MLPV-----VDRPLIQYAVDEAVEA--------G---IEQMIFVTGR---GKS 72 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCH
T ss_pred ccEEEEECCCCccccCccccCCCce--eeeE-----CCeEHHHHHHHHHHhC--------C---CCEEEEEeCC---CHH
Confidence 45679999999999974 66888 8887 4999999999887652 3 1246777776 467
Q ss_pred HHHHHHHH
Q 008010 365 RITSLCER 372 (581)
Q Consensus 365 ~T~~flek 372 (581)
.+.++|.+
T Consensus 73 ~i~~~~~~ 80 (297)
T 2ux8_A 73 ALEDHFDI 80 (297)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHhh
Confidence 77777653
No 53
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=94.82 E-value=0.016 Score=59.73 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=43.7
Q ss_pred eEEEecCCCcCCCC----CCCCCCCccccCcccCCCC-CccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchH
Q 008010 290 GEIYPLGGSADRLG----LVDHETGECLPAAMLPYCG-RTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHE 364 (581)
Q Consensus 290 a~VlLAGGqGTRLG----~~~PKgg~~lpvg~lps~g-kSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The 364 (581)
..|+||||.||||+ ...||- ++|++ | ++++|..++++.... | + -.++|.|.. ...+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~--ll~l~-----g~~pli~~~l~~l~~~~-------~--~-~~iivvt~~--~~~~ 63 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQ--FLKLF-----GNKSLMRWTFERVLEEM-------D--P-KDVIVVTHK--DYVE 63 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGG--GCCCB-----TTBCHHHHHHHHHHTTC-------C--G-GGEEEEEEG--GGHH
T ss_pred EEEEECCCCCccCCCCcCCCCCce--EEECC-----CCCcHHHHHHHHHhccC-------C--C-CcEEEEcCh--HHHH
Confidence 45889999999998 568998 88873 6 999999999876531 2 1 245666765 1234
Q ss_pred HHHHHHH
Q 008010 365 RITSLCE 371 (581)
Q Consensus 365 ~T~~fle 371 (581)
.+.+++.
T Consensus 64 ~i~~~l~ 70 (336)
T 2x65_A 64 RTKKELP 70 (336)
T ss_dssp HHHHHCT
T ss_pred HHHHHhh
Confidence 4555554
No 54
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=94.78 E-value=0.015 Score=56.77 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010 289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS 368 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~ 368 (581)
+..|+||||.||||| +|- ++|+ .|+++++..++++... | + -.++|.|.. +.+.+
T Consensus 3 ~~aiIlA~G~g~R~~---~K~--l~~~-----~gkpli~~~l~~l~~~--------~--~-~~ivvv~~~-----~~i~~ 56 (262)
T 1vic_A 3 FTVIIPARFASSRLP---GKP--LADI-----KGKPMIQHVFEKALQS--------G--A-SRVIIATDN-----ENVAD 56 (262)
T ss_dssp CEEEEECCCCCSSST---TGG--GCEE-----TTEEHHHHHHHHHHHT--------T--C-SEEEEEESC-----HHHHH
T ss_pred cEEEEEcCCCCCCCC---CCc--cccC-----CCeEHHHHHHHHHHhC--------C--C-ceEEEECCc-----HHHHH
Confidence 567999999999997 487 8887 4999999999887653 2 2 345666653 45777
Q ss_pred HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010 369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV 448 (581)
Q Consensus 369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~ 448 (581)
++++. |. .++.+. + ..|.|-|.+..+ ++.+...+-+++.|.+.|.+
T Consensus 57 ~~~~~---~~-----~~~~~~-------~-------------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P 102 (262)
T 1vic_A 57 VAKSF---GA-----EVCMTS-------V-------------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEP 102 (262)
T ss_dssp HHHHT---TC-----EEEECC-------C-------------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCT
T ss_pred HHHhc---CC-----EEEECC-------c-------------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcC
Confidence 77652 32 111110 0 123344433332 22222235689999999999
Q ss_pred ccc
Q 008010 449 VAA 451 (581)
Q Consensus 449 Lak 451 (581)
+..
T Consensus 103 ~i~ 105 (262)
T 1vic_A 103 LIP 105 (262)
T ss_dssp TCC
T ss_pred ccC
Confidence 876
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=94.74 E-value=0.017 Score=58.57 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=45.9
Q ss_pred eeEEEecCCCcCCCCC---CCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHH
Q 008010 289 LGEIYPLGGSADRLGL---VDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHER 365 (581)
Q Consensus 289 ia~VlLAGGqGTRLG~---~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~ 365 (581)
+..|+||||.||||+- ..||- ++|++ |+++++..++++... | .-.++|.|+. ..+.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~--ll~i~-----gkpli~~~l~~l~~~--------g---i~~iivv~~~---~~~~ 71 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKE--LLPVV-----DTPGIELIAAEAAEL--------G---ATRLAIITAP---NKAG 71 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGG--GCEET-----TEEHHHHHHHHHHHT--------T---CCEEEEEECT---TCHH
T ss_pred eEEEEECCCCccccCccccCCCce--eeeEC-----CEEHHHHHHHHHHhC--------C---CCEEEEEecC---cHHH
Confidence 4568999999999975 67888 88874 899999999887652 3 1246777776 4566
Q ss_pred HHHHHH
Q 008010 366 ITSLCE 371 (581)
Q Consensus 366 T~~fle 371 (581)
+.++|.
T Consensus 72 i~~~~~ 77 (323)
T 2pa4_A 72 VLAHFE 77 (323)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 666553
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=94.19 E-value=0.025 Score=59.51 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=35.4
Q ss_pred ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+++.|+||||.|||||...||. ++|+ .|+++++..++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~--ll~l-----~GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQ--FLRL-----GNDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGG--GCEE-----BTEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcc--eEEE-----CCeEHHHHHHHHHHc
Confidence 4678999999999999777998 8887 499999999988765
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=93.53 E-value=0.039 Score=56.85 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=33.4
Q ss_pred eeEEEecCCCcCCCC----CCCCCCCccccCcccCCCC-CccHHHHHHHHHH
Q 008010 289 LGEIYPLGGSADRLG----LVDHETGECLPAAMLPYCG-RTLLEGLIRDLQA 335 (581)
Q Consensus 289 ia~VlLAGGqGTRLG----~~~PKgg~~lpvg~lps~g-kSllql~~e~I~~ 335 (581)
+..|+||||.||||. ...||- ++|++ | ++++|..++++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~--ll~l~-----G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKP--FLPLF-----EGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGG--GCBCG-----GGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCce--EEEcC-----CCChHHHHHHHHHhC
Confidence 456899999999997 567998 88873 6 9999999988755
No 58
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=92.76 E-value=0.049 Score=56.14 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.3
Q ss_pred eEEEecCCCcCCCC---CCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHH
Q 008010 290 GEIYPLGGSADRLG---LVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366 (581)
Q Consensus 290 a~VlLAGGqGTRLG---~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T 366 (581)
..|+||||.||||+ ...||. ++|+ .|+++++..++++.+. | .-.++|.|+. . .
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~--ll~i-----~g~pli~~~l~~l~~~--------~---~~~i~vv~~~---~---i 57 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKA--FVPI-----LSKPLIEYQIEYLRKC--------G---IRDITVIVSS---K---N 57 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGG--GCEE-----TTEEHHHHHHHHHHHT--------T---CCEEEEEECG---G---G
T ss_pred eEEEEcCcCccccCcccCCCCcc--eeeE-----CCEeHHHHHHHHHHHC--------C---CCEEEEEeCH---H---H
Confidence 35899999999997 467898 8887 4999999999987652 2 1245677765 2 6
Q ss_pred HHHHHHc
Q 008010 367 TSLCERL 373 (581)
Q Consensus 367 ~~flekn 373 (581)
.+++++.
T Consensus 58 ~~~~~~~ 64 (401)
T 2ggo_A 58 KEYFEKK 64 (401)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 6777663
No 59
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=92.25 E-value=0.077 Score=50.99 Aligned_cols=39 Identities=33% Similarity=0.537 Sum_probs=31.6
Q ss_pred eeEEEecCCC---cCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHH
Q 008010 289 LGEIYPLGGS---ADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQA 335 (581)
Q Consensus 289 ia~VlLAGGq---GTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~ 335 (581)
+..|+||||. |+|+| ..||. ++|+ .|+++++..++++..
T Consensus 3 ~~~vIlAaG~tRl~~r~~-~~~K~--l~~i-----~g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 3 PSAIVLAGGKEAWAERFG-VGSKA--LVPY-----RGRPMVEWVLEALYA 44 (232)
T ss_dssp CEEEEECCCBCSGGGTTT-CSBGG--GSEE-----TTEETHHHHHHHHHH
T ss_pred eeEEEECCCCCccccccC-CCCce--eeEE-----CCEEHHHHHHHHHHh
Confidence 5678999999 66666 36898 8887 499999999988765
No 60
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.62 E-value=1.2e+02 Score=26.11 Aligned_cols=48 Identities=8% Similarity=0.181 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHH
Q 008010 362 NHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHD 434 (581)
Q Consensus 362 The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~ 434 (581)
.+...++.|++.. | +.++|.+-.+ |+.+ |..|...+|+++|-|+.+++
T Consensus 58 ~~~~~~~~l~~~s--g----------~~tvP~vfI~-g~~i------------GG~d~l~~l~~~G~L~~~L~ 105 (121)
T 3gx8_A 58 EDPELREGIKEFS--E----------WPTIPQLYVN-KEFI------------GGCDVITSMARSGELADLLE 105 (121)
T ss_dssp TCHHHHHHHHHHH--T----------CCSSCEEEET-TEEE------------ESHHHHHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHh--C----------CCCCCeEEEC-CEEE------------ecHHHHHHHHHcCChHHHHH
Confidence 4567777777642 2 4679999877 7655 77788889999999988764
Done!