Query 008011
Match_columns 581
No_of_seqs 1094 out of 2972
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 9.2E-90 2E-94 628.1 38.7 512 48-562 2-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 3.7E-66 8E-71 459.4 29.4 481 61-558 5-507 (508)
3 KOG0271 Notchless-like WD40 re 100.0 2.7E-51 5.9E-56 372.3 30.1 325 248-580 91-464 (480)
4 KOG0273 Beta-transducin family 100.0 7.2E-47 1.6E-51 352.5 30.8 318 258-580 165-506 (524)
5 KOG0271 Notchless-like WD40 re 100.0 2.8E-47 6E-52 346.3 26.9 306 238-558 130-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 7.1E-45 1.5E-49 335.0 23.5 281 270-558 173-458 (459)
7 KOG0286 G-protein beta subunit 100.0 5.8E-42 1.3E-46 301.5 33.9 292 260-558 43-343 (343)
8 KOG0282 mRNA splicing factor [ 100.0 4.8E-42 1E-46 321.7 21.7 299 256-558 198-503 (503)
9 KOG0279 G protein beta subunit 100.0 5E-39 1.1E-43 281.4 32.0 291 264-561 7-314 (315)
10 KOG0265 U5 snRNP-specific prot 100.0 3.4E-39 7.4E-44 285.2 28.4 291 263-558 38-336 (338)
11 KOG0315 G-protein beta subunit 100.0 8.9E-38 1.9E-42 269.0 29.4 275 285-568 11-296 (311)
12 KOG0645 WD40 repeat protein [G 100.0 4.7E-37 1E-41 267.9 32.9 287 264-560 6-311 (312)
13 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-39 5.5E-44 298.4 19.2 246 263-515 208-458 (459)
14 KOG0316 Conserved WD40 repeat- 100.0 1.2E-37 2.7E-42 266.0 26.8 292 259-559 4-298 (307)
15 KOG0291 WD40-repeat-containing 100.0 1.7E-36 3.7E-41 298.1 34.7 348 228-580 100-533 (893)
16 KOG0284 Polyadenylation factor 100.0 2.3E-38 4.9E-43 290.8 19.1 283 271-561 95-381 (464)
17 KOG0318 WD40 repeat stress pro 100.0 9.3E-36 2E-40 281.9 35.5 309 240-560 165-602 (603)
18 KOG0266 WD40 repeat-containing 100.0 2.3E-36 5E-41 309.2 33.8 293 265-560 151-454 (456)
19 KOG0295 WD40 repeat-containing 100.0 1E-36 2.2E-41 276.2 26.6 290 262-559 98-405 (406)
20 KOG0285 Pleiotropic regulator 100.0 8.5E-37 1.8E-41 275.7 26.0 300 257-566 136-445 (460)
21 KOG0315 G-protein beta subunit 100.0 9.5E-36 2.1E-40 256.5 29.4 288 238-538 13-309 (311)
22 cd00200 WD40 WD40 domain, foun 100.0 4.8E-35 1E-39 284.0 37.6 286 265-558 2-289 (289)
23 KOG0273 Beta-transducin family 100.0 2.5E-35 5.4E-40 275.5 31.2 278 272-560 235-523 (524)
24 KOG0279 G protein beta subunit 100.0 2.9E-35 6.2E-40 257.9 28.8 271 238-517 31-313 (315)
25 KOG0263 Transcription initiati 100.0 8.1E-36 1.8E-40 296.3 27.6 281 257-541 363-697 (707)
26 KOG0296 Angio-associated migra 100.0 4E-35 8.8E-40 266.0 28.7 310 264-580 56-381 (399)
27 KOG0291 WD40-repeat-containing 100.0 5.9E-34 1.3E-38 280.3 34.7 326 236-569 270-621 (893)
28 KOG0640 mRNA cleavage stimulat 100.0 3.6E-34 7.9E-39 254.1 28.4 357 201-560 28-426 (430)
29 KOG0286 G-protein beta subunit 100.0 7.8E-34 1.7E-38 250.4 28.7 267 237-515 69-343 (343)
30 KOG0319 WD40-repeat-containing 100.0 2E-34 4.3E-39 283.4 27.7 297 263-567 95-584 (775)
31 PLN00181 protein SPA1-RELATED; 100.0 3.7E-33 8E-38 307.1 39.7 285 268-559 479-792 (793)
32 KOG0263 Transcription initiati 100.0 1.4E-34 3.1E-39 287.5 23.8 250 311-565 372-654 (707)
33 KOG0278 Serine/threonine kinas 100.0 1.2E-34 2.7E-39 249.7 19.1 289 266-565 8-302 (334)
34 KOG0288 WD40 repeat protein Ti 100.0 6.1E-35 1.3E-39 268.7 17.4 299 253-558 156-459 (459)
35 KOG0318 WD40 repeat stress pro 100.0 3.4E-32 7.3E-37 257.8 35.6 323 237-565 22-355 (603)
36 KOG0296 Angio-associated migra 100.0 1.3E-32 2.9E-37 249.7 30.4 287 264-560 98-398 (399)
37 KOG0295 WD40 repeat-containing 100.0 9.7E-34 2.1E-38 256.9 21.3 252 259-516 137-405 (406)
38 KOG0281 Beta-TrCP (transducin 100.0 1.6E-34 3.5E-39 260.0 14.7 273 271-565 196-482 (499)
39 KOG0643 Translation initiation 100.0 3.2E-32 7E-37 237.2 28.0 285 267-561 5-318 (327)
40 KOG0276 Vesicle coat complex C 100.0 1.9E-32 4.2E-37 264.2 28.3 304 266-578 7-317 (794)
41 KOG1407 WD40 repeat protein [F 100.0 4.4E-32 9.6E-37 235.6 27.7 286 266-560 14-311 (313)
42 KOG0306 WD40-repeat-containing 100.0 9.2E-32 2E-36 264.8 32.5 321 243-580 85-647 (888)
43 KOG0283 WD40 repeat-containing 100.0 1.2E-32 2.5E-37 276.4 25.5 248 265-517 259-576 (712)
44 KOG0285 Pleiotropic regulator 100.0 1E-32 2.2E-37 249.5 22.3 254 307-567 141-396 (460)
45 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-30 4.5E-35 232.2 33.8 291 264-564 6-307 (311)
46 KOG0284 Polyadenylation factor 100.0 3E-33 6.5E-38 257.2 14.5 243 317-563 96-340 (464)
47 KOG0313 Microtubule binding pr 100.0 2E-31 4.3E-36 243.2 25.7 287 261-560 95-418 (423)
48 KOG0306 WD40-repeat-containing 100.0 1.6E-31 3.5E-36 263.1 26.7 287 266-563 367-667 (888)
49 KOG0292 Vesicle coat complex C 100.0 1.5E-31 3.3E-36 267.3 26.7 290 267-564 4-325 (1202)
50 KOG0772 Uncharacterized conser 100.0 1.5E-31 3.2E-36 252.8 24.9 299 257-557 152-484 (641)
51 KOG0319 WD40-repeat-containing 100.0 1.5E-31 3.3E-36 263.2 25.6 291 262-561 313-620 (775)
52 KOG0276 Vesicle coat complex C 100.0 1.3E-31 2.8E-36 258.6 23.1 254 311-567 7-264 (794)
53 KOG0289 mRNA splicing factor [ 100.0 1.5E-29 3.1E-34 234.7 31.0 281 272-559 219-505 (506)
54 KOG0316 Conserved WD40 repeat- 100.0 2E-30 4.3E-35 221.9 22.7 252 309-569 9-266 (307)
55 KOG0266 WD40 repeat-containing 100.0 1.6E-29 3.5E-34 258.8 31.3 255 312-568 153-417 (456)
56 cd00200 WD40 WD40 domain, foun 100.0 3.6E-29 7.8E-34 242.7 32.0 265 311-580 3-274 (289)
57 KOG0281 Beta-TrCP (transducin 100.0 1.5E-31 3.3E-36 240.9 13.7 233 316-565 196-433 (499)
58 KOG0265 U5 snRNP-specific prot 100.0 1.3E-29 2.9E-34 224.6 24.4 267 308-579 38-320 (338)
59 KOG0277 Peroxisomal targeting 100.0 1.2E-29 2.5E-34 219.7 22.2 280 276-559 12-308 (311)
60 KOG0645 WD40 repeat protein [G 100.0 6.8E-29 1.5E-33 217.1 26.8 268 238-517 30-311 (312)
61 KOG0274 Cdc4 and related F-box 100.0 5.3E-29 1.2E-33 253.8 30.3 281 270-567 206-489 (537)
62 KOG0973 Histone transcription 100.0 2.2E-29 4.9E-34 259.1 26.6 294 270-565 11-360 (942)
63 KOG0292 Vesicle coat complex C 100.0 7.6E-29 1.6E-33 248.1 28.5 306 240-560 26-397 (1202)
64 KOG0299 U3 snoRNP-associated p 100.0 6.6E-29 1.4E-33 232.3 26.3 293 265-560 135-456 (479)
65 PLN00181 protein SPA1-RELATED; 100.0 3.2E-28 6.9E-33 268.1 36.1 264 293-562 457-740 (793)
66 KOG0282 mRNA splicing factor [ 100.0 1.7E-30 3.7E-35 244.3 15.2 265 308-577 205-484 (503)
67 KOG0647 mRNA export protein (c 100.0 3.1E-28 6.6E-33 216.1 27.4 278 268-551 23-315 (347)
68 KOG0268 Sof1-like rRNA process 100.0 4.4E-30 9.6E-35 232.9 15.8 287 264-563 58-348 (433)
69 PTZ00421 coronin; Provisional 100.0 7.4E-28 1.6E-32 245.3 33.6 269 271-541 19-315 (493)
70 KOG0300 WD40 repeat-containing 100.0 1.1E-28 2.3E-33 220.0 22.0 294 261-563 137-479 (481)
71 KOG0294 WD40 repeat-containing 100.0 1E-27 2.2E-32 214.0 27.1 266 287-562 4-283 (362)
72 KOG0641 WD40 repeat protein [G 100.0 3.7E-26 8.1E-31 194.5 33.6 294 260-560 21-349 (350)
73 KOG0305 Anaphase promoting com 100.0 1E-27 2.2E-32 235.1 27.8 273 277-562 182-463 (484)
74 KOG0283 WD40 repeat-containing 100.0 3.5E-28 7.6E-33 244.3 25.1 247 311-563 260-579 (712)
75 KOG0294 WD40 repeat-containing 100.0 2E-27 4.3E-32 212.2 26.8 267 260-537 31-305 (362)
76 KOG0313 Microtubule binding pr 100.0 6.6E-28 1.4E-32 220.3 24.3 266 237-516 117-417 (423)
77 KOG0310 Conserved WD40 repeat- 100.0 7.7E-28 1.7E-32 226.9 24.7 282 270-561 24-310 (487)
78 KOG0293 WD40 repeat-containing 100.0 2.5E-28 5.4E-33 225.0 20.8 265 309-578 216-493 (519)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-26 3.3E-31 207.4 30.4 261 308-569 5-271 (311)
80 PTZ00420 coronin; Provisional 100.0 2.2E-26 4.8E-31 235.4 35.3 246 290-541 50-318 (568)
81 KOG0277 Peroxisomal targeting 100.0 4.6E-28 9.9E-33 209.9 17.7 241 271-516 59-308 (311)
82 KOG1408 WD40 repeat protein [F 100.0 2.5E-27 5.3E-32 232.1 24.3 323 236-561 329-714 (1080)
83 KOG0301 Phospholipase A2-activ 100.0 5.4E-27 1.2E-31 229.7 26.1 283 263-561 5-289 (745)
84 PTZ00421 coronin; Provisional 100.0 6.1E-26 1.3E-30 231.3 34.4 214 266-480 69-298 (493)
85 KOG1407 WD40 repeat protein [F 100.0 7.6E-27 1.6E-31 203.2 22.0 263 311-579 14-284 (313)
86 KOG0274 Cdc4 and related F-box 100.0 4.1E-26 8.8E-31 232.7 29.8 275 240-537 223-503 (537)
87 KOG0278 Serine/threonine kinas 100.0 5.1E-28 1.1E-32 209.0 13.4 252 261-522 48-302 (334)
88 KOG1273 WD40 repeat protein [G 100.0 3.2E-26 7E-31 204.3 24.0 296 259-563 12-325 (405)
89 KOG0305 Anaphase promoting com 100.0 3.7E-26 7.9E-31 224.2 26.6 278 225-519 178-463 (484)
90 KOG0308 Conserved WD40 repeat- 100.0 3E-27 6.5E-32 229.8 18.6 275 282-561 35-328 (735)
91 KOG0275 Conserved WD40 repeat- 100.0 2.8E-27 6E-32 211.6 16.4 270 239-515 229-507 (508)
92 KOG2096 WD40 repeat protein [G 100.0 7.9E-26 1.7E-30 202.0 25.3 288 265-558 79-400 (420)
93 KOG1036 Mitotic spindle checkp 99.9 5.4E-25 1.2E-29 196.5 29.9 270 271-550 12-294 (323)
94 PTZ00420 coronin; Provisional 99.9 6.1E-25 1.3E-29 224.8 34.8 242 335-578 50-317 (568)
95 KOG1539 WD repeat protein [Gen 99.9 3.3E-25 7E-30 221.5 30.5 312 261-581 191-631 (910)
96 KOG0264 Nucleosome remodeling 99.9 3.1E-26 6.7E-31 214.6 21.8 251 270-562 122-406 (422)
97 KOG0643 Translation initiation 99.9 2.7E-25 5.8E-30 194.1 26.1 264 312-580 5-300 (327)
98 KOG1332 Vesicle coat complex C 99.9 2.3E-26 5E-31 198.3 18.1 247 267-516 6-285 (299)
99 KOG0289 mRNA splicing factor [ 99.9 2E-25 4.3E-30 207.3 25.4 251 260-516 249-505 (506)
100 KOG0647 mRNA export protein (c 99.9 1.2E-25 2.7E-30 199.6 22.6 260 315-580 25-306 (347)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.2E-24 9.2E-29 209.6 35.7 276 284-569 1-288 (300)
102 KOG0321 WD40 repeat-containing 99.9 8.7E-26 1.9E-30 219.2 22.5 284 278-563 55-394 (720)
103 KOG0310 Conserved WD40 repeat- 99.9 7.9E-26 1.7E-30 213.4 21.5 244 265-517 61-309 (487)
104 KOG0639 Transducin-like enhanc 99.9 6.1E-26 1.3E-30 214.1 20.6 282 270-559 417-703 (705)
105 KOG0973 Histone transcription 99.9 1.9E-25 4.2E-30 230.3 25.6 255 262-519 59-357 (942)
106 KOG2055 WD40 repeat protein [G 99.9 2.5E-25 5.5E-30 208.3 23.6 283 272-560 213-512 (514)
107 KOG0288 WD40 repeat protein Ti 99.9 2.6E-26 5.7E-31 212.0 15.9 243 263-514 210-458 (459)
108 KOG0650 WD40 repeat nucleolar 99.9 9.4E-25 2E-29 210.5 26.7 291 258-558 386-733 (733)
109 KOG0299 U3 snoRNP-associated p 99.9 3.6E-25 7.8E-30 207.4 22.7 263 311-580 136-438 (479)
110 KOG0308 Conserved WD40 repeat- 99.9 1.4E-25 3E-30 218.3 20.4 326 234-566 36-399 (735)
111 KOG0772 Uncharacterized conser 99.9 5.6E-25 1.2E-29 208.5 21.2 272 238-515 182-485 (641)
112 KOG1036 Mitotic spindle checkp 99.9 3.8E-24 8.2E-29 191.1 24.7 257 316-580 12-287 (323)
113 KOG4283 Transcription-coupled 99.9 2.8E-24 6.1E-29 190.2 23.6 286 268-559 39-364 (397)
114 KOG0640 mRNA cleavage stimulat 99.9 5.9E-25 1.3E-29 195.7 19.2 266 311-579 106-408 (430)
115 KOG1274 WD40 repeat protein [G 99.9 6.8E-24 1.5E-28 214.5 29.1 278 269-557 10-297 (933)
116 KOG1063 RNA polymerase II elon 99.9 1.3E-23 2.7E-28 206.2 27.6 328 242-578 166-625 (764)
117 KOG2106 Uncharacterized conser 99.9 1.5E-22 3.4E-27 191.5 33.5 284 264-559 237-625 (626)
118 KOG0641 WD40 repeat protein [G 99.9 5.3E-23 1.2E-27 175.4 27.4 252 262-517 79-349 (350)
119 KOG1445 Tumor-specific antigen 99.9 2.2E-24 4.8E-29 208.9 21.3 157 422-581 602-778 (1012)
120 KOG0268 Sof1-like rRNA process 99.9 5.4E-25 1.2E-29 200.1 15.2 260 309-580 58-328 (433)
121 KOG2445 Nuclear pore complex c 99.9 3.6E-23 7.8E-28 184.5 25.9 264 269-562 10-320 (361)
122 KOG1408 WD40 repeat protein [F 99.9 2.4E-23 5.3E-28 204.3 25.9 302 275-578 327-694 (1080)
123 KOG4328 WD40 protein [Function 99.9 1.7E-23 3.7E-28 196.0 23.4 297 264-561 178-496 (498)
124 KOG0300 WD40 repeat-containing 99.9 1E-23 2.2E-28 188.3 20.5 254 261-519 179-478 (481)
125 KOG0269 WD40 repeat-containing 99.9 5.5E-24 1.2E-28 211.2 19.6 288 273-564 40-344 (839)
126 KOG1539 WD repeat protein [Gen 99.9 9.1E-23 2E-27 204.1 28.1 290 263-560 235-648 (910)
127 KOG1274 WD40 repeat protein [G 99.9 5E-23 1.1E-27 208.3 26.5 263 314-580 10-283 (933)
128 KOG2106 Uncharacterized conser 99.9 1.8E-21 4E-26 184.3 35.0 289 265-563 193-524 (626)
129 KOG0269 WD40 repeat-containing 99.9 2.8E-24 6E-29 213.3 15.9 243 275-519 90-342 (839)
130 KOG1063 RNA polymerase II elon 99.9 6.5E-23 1.4E-27 201.2 25.3 331 229-560 272-699 (764)
131 KOG0646 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 194.9 22.1 268 290-567 13-314 (476)
132 KOG0646 WD40 repeat protein [G 99.9 1.7E-23 3.8E-28 196.6 20.2 272 285-560 51-350 (476)
133 KOG2048 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 194.7 31.0 281 271-562 24-321 (691)
134 KOG1332 Vesicle coat complex C 99.9 6.7E-23 1.5E-27 177.0 20.1 231 238-473 26-288 (299)
135 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.8E-27 199.3 24.8 262 234-517 24-288 (745)
136 KOG0639 Transducin-like enhanc 99.9 2.8E-23 6E-28 196.3 17.5 263 245-516 440-703 (705)
137 KOG1009 Chromatin assembly com 99.9 4.7E-22 1E-26 183.8 24.8 292 272-565 13-377 (434)
138 KOG0321 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 197.0 21.6 298 240-541 69-429 (720)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-20 2.9E-25 184.7 35.4 280 240-539 6-300 (300)
140 KOG0264 Nucleosome remodeling 99.9 2E-22 4.3E-27 189.2 20.5 241 232-472 133-405 (422)
141 KOG2055 WD40 repeat protein [G 99.9 5.3E-22 1.1E-26 186.2 22.1 261 316-580 212-495 (514)
142 KOG0267 Microtubule severing p 99.9 1.1E-23 2.4E-28 207.4 10.0 254 284-551 4-259 (825)
143 KOG2919 Guanine nucleotide-bin 99.9 1.7E-21 3.6E-26 175.0 22.5 274 276-552 53-362 (406)
144 KOG4227 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 177.6 22.4 293 265-560 49-387 (609)
145 KOG2048 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 184.4 28.8 245 316-564 24-279 (691)
146 KOG0270 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 183.4 19.3 241 283-565 191-454 (463)
147 KOG1034 Transcriptional repres 99.9 5.3E-21 1.2E-25 172.2 22.6 290 266-560 32-383 (385)
148 KOG0267 Microtubule severing p 99.9 4.3E-23 9.2E-28 203.4 9.9 237 266-509 22-260 (825)
149 KOG0307 Vesicle coat complex C 99.9 2.2E-22 4.8E-27 208.7 14.6 284 277-563 11-330 (1049)
150 KOG2096 WD40 repeat protein [G 99.9 3E-20 6.4E-25 166.6 23.4 265 311-581 80-387 (420)
151 KOG0644 Uncharacterized conser 99.9 6.3E-22 1.4E-26 197.8 13.9 296 263-573 181-481 (1113)
152 KOG1538 Uncharacterized conser 99.9 3.6E-20 7.7E-25 180.9 24.2 242 262-516 43-292 (1081)
153 KOG1538 Uncharacterized conser 99.9 2.7E-20 5.7E-25 181.8 22.8 272 274-561 14-294 (1081)
154 KOG0302 Ribosome Assembly prot 99.9 2.9E-20 6.2E-25 170.4 21.6 205 268-472 147-379 (440)
155 KOG1334 WD40 repeat protein [G 99.9 2.4E-21 5.3E-26 183.0 14.9 296 265-563 135-469 (559)
156 KOG0322 G-protein beta subunit 99.9 7.1E-21 1.5E-25 166.4 15.6 287 261-559 3-322 (323)
157 KOG4378 Nuclear protein COP1 [ 99.9 2.3E-20 5E-25 176.5 20.0 261 274-541 36-305 (673)
158 KOG1273 WD40 repeat protein [G 99.9 3.5E-20 7.7E-25 165.9 19.0 243 320-566 26-286 (405)
159 KOG4378 Nuclear protein COP1 [ 99.9 2.5E-20 5.3E-25 176.3 18.2 258 229-494 39-303 (673)
160 KOG4283 Transcription-coupled 99.9 1.6E-19 3.4E-24 160.3 21.9 273 235-516 56-364 (397)
161 KOG0650 WD40 repeat nucleolar 99.9 5.2E-20 1.1E-24 178.0 20.0 243 309-558 392-678 (733)
162 KOG1007 WD repeat protein TSSC 99.8 2.2E-19 4.8E-24 159.0 21.5 265 292-560 38-361 (370)
163 KOG0303 Actin-binding protein 99.8 1.7E-19 3.7E-24 166.3 20.8 212 267-479 76-302 (472)
164 KOG4328 WD40 protein [Function 99.8 1.3E-19 2.8E-24 170.1 20.2 251 311-566 180-456 (498)
165 KOG1188 WD40 repeat protein [G 99.8 1.4E-19 3E-24 164.1 18.9 270 285-560 41-346 (376)
166 KOG0642 Cell-cycle nuclear pro 99.8 4E-20 8.7E-25 178.1 15.7 265 265-566 287-567 (577)
167 KOG1310 WD40 repeat protein [G 99.8 1.9E-19 4.1E-24 172.4 19.9 206 265-472 43-304 (758)
168 KOG0302 Ribosome Assembly prot 99.8 4.5E-19 9.7E-24 162.6 21.5 244 311-557 145-435 (440)
169 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-17 7.1E-22 168.4 38.2 290 267-563 60-362 (466)
170 KOG1034 Transcriptional repres 99.8 4.7E-20 1E-24 166.1 14.4 243 270-517 87-383 (385)
171 KOG1963 WD40 repeat protein [G 99.8 8.5E-18 1.9E-22 170.5 30.4 289 270-562 203-540 (792)
172 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.5E-21 164.3 39.9 288 262-561 145-443 (466)
173 PRK11028 6-phosphogluconolacto 99.8 6E-17 1.3E-21 160.7 33.3 268 288-560 6-304 (330)
174 KOG1009 Chromatin assembly com 99.8 3.2E-18 7E-23 158.7 21.4 280 238-522 29-377 (434)
175 KOG1517 Guanine nucleotide bin 99.8 3E-18 6.6E-23 175.9 22.8 289 273-564 1065-1385(1387)
176 KOG2919 Guanine nucleotide-bin 99.8 6.4E-18 1.4E-22 152.1 22.1 252 320-577 52-350 (406)
177 KOG1523 Actin-related protein 99.8 1.3E-17 2.8E-22 150.1 23.6 208 267-474 5-239 (361)
178 KOG0307 Vesicle coat complex C 99.8 1.8E-19 3.8E-24 187.4 13.2 246 272-520 64-330 (1049)
179 KOG0303 Actin-binding protein 99.8 7.7E-18 1.7E-22 155.4 22.0 208 311-521 75-298 (472)
180 KOG0290 Conserved WD40 repeat- 99.8 7.1E-18 1.5E-22 149.7 19.9 250 274-564 46-322 (364)
181 KOG1240 Protein kinase contain 99.8 2.6E-17 5.6E-22 171.8 27.2 298 259-558 1035-1431(1431)
182 KOG0270 WD40 repeat-containing 99.8 1.8E-18 3.8E-23 162.1 14.8 204 268-474 239-452 (463)
183 KOG1587 Cytoplasmic dynein int 99.8 1.4E-16 3.1E-21 161.7 27.8 262 294-562 222-518 (555)
184 KOG0649 WD40 repeat protein [G 99.8 2.6E-16 5.6E-21 136.4 24.9 270 273-557 11-313 (325)
185 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.9E-20 151.1 32.6 272 238-517 5-304 (330)
186 KOG2445 Nuclear pore complex c 99.8 2.5E-16 5.4E-21 141.1 23.4 217 313-561 9-257 (361)
187 KOG0644 Uncharacterized conser 99.8 1.6E-18 3.4E-23 173.7 8.8 246 308-566 181-432 (1113)
188 KOG4227 WD40 repeat protein [G 99.7 8.1E-17 1.8E-21 148.4 17.8 251 309-561 48-323 (609)
189 KOG1963 WD40 repeat protein [G 99.7 2.8E-15 6E-20 152.4 30.4 295 265-563 154-490 (792)
190 KOG1007 WD repeat protein TSSC 99.7 2.1E-16 4.5E-21 140.3 18.8 248 266-517 57-361 (370)
191 PRK01742 tolB translocation pr 99.7 3E-16 6.4E-21 160.6 22.9 233 293-540 183-426 (429)
192 KOG4497 Uncharacterized conser 99.7 7.4E-16 1.6E-20 139.2 21.4 280 277-564 13-395 (447)
193 KOG0771 Prolactin regulatory e 99.7 6.3E-17 1.4E-21 151.3 14.5 192 276-472 148-355 (398)
194 KOG1445 Tumor-specific antigen 99.7 1.4E-16 3.1E-21 155.2 17.2 259 280-541 587-871 (1012)
195 KOG1587 Cytoplasmic dynein int 99.7 6.5E-16 1.4E-20 156.9 22.5 245 271-518 241-517 (555)
196 KOG1188 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 142.8 17.3 268 238-516 43-345 (376)
197 PF02239 Cytochrom_D1: Cytochr 99.7 2.7E-14 5.8E-19 141.4 33.0 274 287-569 9-356 (369)
198 KOG1524 WD40 repeat-containing 99.7 3.2E-16 7E-21 150.1 18.0 261 270-556 12-282 (737)
199 KOG0649 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 125.4 25.6 228 237-472 24-275 (325)
200 KOG0290 Conserved WD40 repeat- 99.7 1.5E-15 3.2E-20 135.1 18.4 244 270-556 94-361 (364)
201 KOG1240 Protein kinase contain 99.7 7.2E-15 1.6E-19 153.9 25.7 256 308-565 1039-1339(1431)
202 KOG0642 Cell-cycle nuclear pro 99.7 3.4E-16 7.4E-21 151.2 14.7 241 237-479 308-568 (577)
203 PRK03629 tolB translocation pr 99.7 2.6E-14 5.6E-19 146.0 28.7 233 294-539 179-427 (429)
204 KOG2394 WD40 protein DMR-N9 [G 99.7 3.1E-15 6.7E-20 143.7 19.9 275 274-566 125-458 (636)
205 KOG2110 Uncharacterized conser 99.7 6.4E-13 1.4E-17 122.5 34.1 235 272-518 5-249 (391)
206 KOG0771 Prolactin regulatory e 99.7 8.7E-15 1.9E-19 137.1 22.2 196 363-561 148-355 (398)
207 KOG2139 WD40 repeat protein [G 99.7 5.3E-14 1.1E-18 129.0 26.3 272 234-516 109-430 (445)
208 PRK01742 tolB translocation pr 99.7 8.1E-15 1.8E-19 150.1 22.2 212 265-486 196-417 (429)
209 KOG2321 WD40 repeat protein [G 99.7 2.7E-14 5.9E-19 138.3 24.0 279 271-561 50-344 (703)
210 KOG1524 WD40 repeat-containing 99.7 2.4E-15 5.2E-20 144.2 16.6 249 315-580 12-269 (737)
211 KOG2110 Uncharacterized conser 99.7 7.6E-14 1.7E-18 128.5 25.3 235 318-564 6-252 (391)
212 KOG2139 WD40 repeat protein [G 99.7 2.4E-14 5.2E-19 131.3 21.2 191 274-471 100-309 (445)
213 KOG3881 Uncharacterized conser 99.6 2E-14 4.2E-19 133.3 19.6 253 316-576 54-340 (412)
214 KOG1272 WD40-repeat-containing 99.6 1.2E-15 2.6E-20 144.0 11.6 264 274-552 131-401 (545)
215 KOG1310 WD40 repeat protein [G 99.6 3.3E-15 7.2E-20 143.7 14.3 217 309-525 42-311 (758)
216 PRK04922 tolB translocation pr 99.6 1.2E-13 2.6E-18 141.8 26.8 233 294-539 184-432 (433)
217 KOG1517 Guanine nucleotide bin 99.6 4.6E-14 9.9E-19 145.7 22.0 245 318-565 1065-1338(1387)
218 PRK02889 tolB translocation pr 99.6 3.1E-13 6.8E-18 138.2 27.7 234 294-540 176-425 (427)
219 PRK03629 tolB translocation pr 99.6 2.9E-13 6.3E-18 138.3 26.9 213 266-486 192-419 (429)
220 KOG1523 Actin-related protein 99.6 1.2E-13 2.6E-18 124.8 20.7 232 315-551 8-269 (361)
221 PRK05137 tolB translocation pr 99.6 7.4E-13 1.6E-17 136.1 29.0 233 294-540 182-433 (435)
222 PRK05137 tolB translocation pr 99.6 3.6E-13 7.9E-18 138.4 25.9 205 263-473 192-414 (435)
223 KOG1272 WD40-repeat-containing 99.6 3.8E-15 8.2E-20 140.6 10.1 228 319-558 131-360 (545)
224 KOG1354 Serine/threonine prote 99.6 5.1E-13 1.1E-17 121.8 22.6 247 271-519 24-361 (433)
225 PRK04922 tolB translocation pr 99.6 6.6E-13 1.4E-17 136.3 24.9 202 265-472 196-412 (433)
226 KOG1409 Uncharacterized conser 99.6 3.4E-13 7.3E-18 123.1 18.9 248 263-518 15-271 (404)
227 PRK02889 tolB translocation pr 99.6 1E-12 2.2E-17 134.4 24.9 201 265-471 188-403 (427)
228 KOG2315 Predicted translation 99.6 4.3E-12 9.2E-17 123.3 26.9 274 273-564 35-394 (566)
229 KOG3881 Uncharacterized conser 99.5 6.9E-13 1.5E-17 123.1 20.1 262 271-540 54-342 (412)
230 KOG0322 G-protein beta subunit 99.5 2.1E-13 4.6E-18 119.9 14.9 269 230-516 20-322 (323)
231 KOG1334 WD40 repeat protein [G 99.5 8.3E-14 1.8E-18 132.5 12.8 261 308-569 133-433 (559)
232 KOG4497 Uncharacterized conser 99.5 3.7E-12 7.9E-17 115.6 22.6 304 236-553 13-425 (447)
233 PF10282 Lactonase: Lactonase, 99.5 1.6E-10 3.4E-15 114.9 36.9 263 272-537 36-345 (345)
234 KOG2394 WD40 protein DMR-N9 [G 99.5 1.5E-13 3.3E-18 132.2 13.2 140 272-411 219-384 (636)
235 PF10282 Lactonase: Lactonase, 99.5 3.2E-10 6.9E-15 112.7 37.6 277 287-566 2-330 (345)
236 KOG2111 Uncharacterized conser 99.5 1.4E-11 3E-16 111.7 24.2 235 320-565 8-261 (346)
237 PF08662 eIF2A: Eukaryotic tra 99.5 3.7E-12 7.9E-17 114.6 20.6 149 321-472 9-180 (194)
238 PF08662 eIF2A: Eukaryotic tra 99.5 4.3E-12 9.4E-17 114.2 20.5 152 276-434 9-182 (194)
239 TIGR02800 propeller_TolB tol-p 99.5 2E-11 4.3E-16 125.6 27.9 231 294-537 170-416 (417)
240 PRK04792 tolB translocation pr 99.5 2E-11 4.3E-16 125.4 27.3 232 295-539 199-446 (448)
241 KOG2321 WD40 repeat protein [G 99.5 6.4E-12 1.4E-16 122.2 21.9 259 315-580 49-326 (703)
242 KOG2314 Translation initiation 99.5 1E-11 2.2E-16 120.3 22.7 277 275-564 213-577 (698)
243 PRK00178 tolB translocation pr 99.5 4E-11 8.8E-16 123.5 28.3 233 295-540 180-428 (430)
244 KOG2111 Uncharacterized conser 99.5 3.8E-10 8.2E-15 102.5 30.1 235 274-518 7-257 (346)
245 KOG2041 WD40 repeat protein [G 99.5 7.8E-12 1.7E-16 124.3 21.1 278 272-558 14-335 (1189)
246 TIGR02800 propeller_TolB tol-p 99.4 2.5E-11 5.4E-16 124.9 24.4 193 265-463 182-386 (417)
247 KOG1832 HIV-1 Vpr-binding prot 99.4 8.5E-14 1.8E-18 141.0 5.4 285 220-569 1013-1300(1516)
248 PF02239 Cytochrom_D1: Cytochr 99.4 1.9E-10 4.1E-15 114.1 29.0 242 333-580 10-328 (369)
249 PRK00178 tolB translocation pr 99.4 7.3E-11 1.6E-15 121.6 26.8 202 265-472 191-407 (430)
250 COG5354 Uncharacterized protei 99.4 2.2E-10 4.8E-15 110.3 26.7 279 272-565 71-400 (561)
251 KOG0974 WD-repeat protein WDR6 99.4 1E-10 2.3E-15 121.7 25.9 151 278-433 139-290 (967)
252 PRK04792 tolB translocation pr 99.4 1.1E-10 2.5E-15 119.8 24.9 209 266-482 211-434 (448)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 4.7E-09 1E-13 101.7 33.8 265 294-568 27-338 (352)
254 COG2706 3-carboxymuconate cycl 99.4 3.7E-09 8.1E-14 98.4 30.9 266 293-561 15-322 (346)
255 COG2706 3-carboxymuconate cycl 99.4 6.4E-09 1.4E-13 96.8 31.8 270 269-538 36-345 (346)
256 KOG0974 WD-repeat protein WDR6 99.3 6.1E-11 1.3E-15 123.4 19.6 277 272-565 7-293 (967)
257 KOG4547 WD40 repeat-containing 99.3 4.1E-10 8.8E-15 110.6 23.8 190 281-472 2-221 (541)
258 KOG1354 Serine/threonine prote 99.3 1.1E-10 2.4E-15 106.9 18.3 245 317-564 25-363 (433)
259 PF04762 IKI3: IKI3 family; I 99.3 1.8E-09 3.9E-14 118.7 31.2 284 270-562 73-458 (928)
260 KOG0280 Uncharacterized conser 99.3 8.7E-10 1.9E-14 99.1 23.0 267 293-563 45-336 (339)
261 PRK01029 tolB translocation pr 99.3 2E-09 4.3E-14 109.7 27.9 236 295-541 166-426 (428)
262 COG4946 Uncharacterized protei 99.3 5.1E-09 1.1E-13 100.1 28.2 172 283-461 331-508 (668)
263 KOG1064 RAVE (regulator of V-A 99.3 3.9E-11 8.4E-16 130.6 14.9 243 287-553 2183-2439(2439)
264 PRK01029 tolB translocation pr 99.3 1.3E-09 2.9E-14 111.0 24.7 202 267-473 179-405 (428)
265 COG5354 Uncharacterized protei 99.3 3.1E-09 6.8E-14 102.5 24.7 272 262-552 118-421 (561)
266 KOG1409 Uncharacterized conser 99.3 2.3E-10 5.1E-15 104.8 16.0 249 308-564 15-274 (404)
267 TIGR03300 assembly_YfgL outer 99.2 8.9E-09 1.9E-13 104.2 28.4 258 283-557 104-376 (377)
268 KOG1064 RAVE (regulator of V-A 99.2 6.4E-11 1.4E-15 129.0 12.4 200 267-481 2203-2407(2439)
269 TIGR03300 assembly_YfgL outer 99.2 1.5E-08 3.3E-13 102.6 29.2 267 283-569 64-347 (377)
270 KOG4190 Uncharacterized conser 99.2 6.6E-11 1.4E-15 114.6 10.8 281 265-556 728-1032(1034)
271 KOG4547 WD40 repeat-containing 99.2 7E-10 1.5E-14 109.0 17.9 207 327-561 3-221 (541)
272 KOG1912 WD40 repeat protein [G 99.2 5.5E-09 1.2E-13 105.5 24.1 303 258-565 41-511 (1062)
273 KOG2659 LisH motif-containing 99.2 1.1E-10 2.4E-15 102.7 10.7 118 61-178 24-148 (228)
274 PLN02919 haloacid dehalogenase 99.2 1.8E-08 4E-13 113.0 30.9 242 321-564 571-892 (1057)
275 KOG2041 WD40 repeat protein [G 99.2 3.4E-10 7.4E-15 112.9 13.9 233 317-551 14-279 (1189)
276 PF08450 SGL: SMP-30/Gluconola 99.2 1.5E-07 3.3E-12 89.0 31.4 222 322-548 4-244 (246)
277 KOG0280 Uncharacterized conser 99.2 5E-09 1.1E-13 94.3 19.3 202 272-473 69-286 (339)
278 PLN02919 haloacid dehalogenase 99.2 4.9E-08 1.1E-12 109.7 31.5 240 277-521 572-892 (1057)
279 KOG1912 WD40 repeat protein [G 99.1 4E-09 8.6E-14 106.5 19.8 284 275-565 18-369 (1062)
280 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.6E-07 3.4E-12 91.2 30.4 235 280-526 53-339 (352)
281 KOG0309 Conserved WD40 repeat- 99.1 5.2E-10 1.1E-14 112.1 13.5 284 272-561 24-340 (1081)
282 PRK04043 tolB translocation pr 99.1 7.4E-08 1.6E-12 97.6 27.7 191 274-472 189-401 (419)
283 PF04762 IKI3: IKI3 family; I 99.1 2.3E-07 4.9E-12 102.4 33.3 303 274-580 23-402 (928)
284 PRK04043 tolB translocation pr 99.1 1.7E-07 3.8E-12 94.9 28.8 206 319-534 189-416 (419)
285 KOG4532 WD40-like repeat conta 99.1 3.6E-08 7.8E-13 87.7 20.6 257 292-561 50-332 (344)
286 PF15492 Nbas_N: Neuroblastoma 99.1 1.5E-07 3.3E-12 85.2 24.8 239 277-567 2-266 (282)
287 KOG2315 Predicted translation 99.1 4.1E-08 8.9E-13 96.1 22.5 199 271-473 164-392 (566)
288 COG4946 Uncharacterized protei 99.1 1.1E-07 2.4E-12 91.1 24.8 216 281-506 275-507 (668)
289 COG5170 CDC55 Serine/threonine 99.0 8.7E-09 1.9E-13 93.3 15.4 244 271-516 25-366 (460)
290 KOG0882 Cyclophilin-related pe 99.0 6.2E-09 1.3E-13 98.9 14.1 250 271-525 8-313 (558)
291 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.5E-14 106.1 8.5 238 310-557 728-985 (1034)
292 KOG4532 WD40-like repeat conta 99.0 5.5E-08 1.2E-12 86.5 17.9 219 337-565 50-287 (344)
293 KOG2695 WD40 repeat protein [G 99.0 2.6E-09 5.6E-14 98.2 9.1 170 364-538 216-401 (425)
294 PF13360 PQQ_2: PQQ-like domai 98.9 4.3E-07 9.3E-12 85.6 23.8 220 338-566 2-236 (238)
295 PRK11138 outer membrane biogen 98.9 7.1E-07 1.5E-11 90.8 26.4 256 284-559 120-393 (394)
296 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3.1E-13 102.0 12.8 244 275-518 70-340 (1081)
297 KOG2314 Translation initiation 98.9 2.7E-07 5.8E-12 90.3 20.7 254 320-581 213-506 (698)
298 PF08450 SGL: SMP-30/Gluconola 98.9 8.9E-06 1.9E-10 76.9 31.0 215 277-505 4-243 (246)
299 KOG1645 RING-finger-containing 98.9 3.4E-07 7.5E-12 86.2 19.0 257 296-560 175-461 (463)
300 PRK11138 outer membrane biogen 98.8 2.3E-06 5.1E-11 87.0 26.1 270 284-569 69-362 (394)
301 PF13360 PQQ_2: PQQ-like domai 98.8 2.6E-06 5.7E-11 80.2 24.6 219 293-523 2-236 (238)
302 KOG4714 Nucleoporin [Nuclear s 98.8 6.8E-08 1.5E-12 85.6 11.8 232 320-558 39-316 (319)
303 COG5170 CDC55 Serine/threonine 98.8 1.2E-07 2.7E-12 86.0 13.4 240 317-559 26-366 (460)
304 KOG3914 WD repeat protein WDR4 98.8 9.1E-08 2E-12 90.1 13.0 157 275-434 65-226 (390)
305 PF15492 Nbas_N: Neuroblastoma 98.7 2.8E-06 6E-11 77.2 20.7 197 274-485 45-272 (282)
306 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.2E-05 2.7E-10 80.2 27.6 264 281-551 1-349 (353)
307 KOG4649 PQQ (pyrrolo-quinoline 98.7 3.2E-05 7E-10 69.1 26.3 264 283-562 62-353 (354)
308 KOG3914 WD repeat protein WDR4 98.7 2E-07 4.4E-12 87.9 13.4 162 403-569 64-232 (390)
309 PF00400 WD40: WD domain, G-be 98.7 3.8E-08 8.2E-13 63.1 6.0 38 263-300 2-39 (39)
310 PF07433 DUF1513: Protein of u 98.7 2E-05 4.4E-10 73.9 25.7 200 277-480 9-255 (305)
311 KOG1920 IkappaB kinase complex 98.7 5.9E-06 1.3E-10 88.6 24.1 198 271-473 67-324 (1265)
312 PF00400 WD40: WD domain, G-be 98.7 6.7E-08 1.4E-12 61.9 6.0 39 519-558 1-39 (39)
313 KOG2695 WD40 repeat protein [G 98.7 1.1E-07 2.4E-12 87.7 9.3 149 417-569 228-385 (425)
314 KOG1920 IkappaB kinase complex 98.6 2.7E-05 5.9E-10 83.7 27.5 240 317-560 68-365 (1265)
315 KOG4714 Nucleoporin [Nuclear s 98.6 4E-07 8.8E-12 80.8 11.5 163 268-432 85-255 (319)
316 KOG2114 Vacuolar assembly/sort 98.6 1.1E-05 2.4E-10 83.5 22.8 208 319-534 27-261 (933)
317 KOG1832 HIV-1 Vpr-binding prot 98.6 4.1E-08 8.9E-13 100.7 5.2 125 262-393 1091-1218(1516)
318 KOG2114 Vacuolar assembly/sort 98.6 8.2E-06 1.8E-10 84.4 20.9 204 274-485 27-257 (933)
319 PF14583 Pectate_lyase22: Olig 98.6 0.00025 5.5E-09 68.8 29.7 270 279-560 42-381 (386)
320 PF07433 DUF1513: Protein of u 98.6 3E-05 6.6E-10 72.8 22.8 192 263-465 47-279 (305)
321 PF00930 DPPIV_N: Dipeptidyl p 98.6 9.4E-06 2E-10 81.1 20.6 253 326-581 1-341 (353)
322 KOG1645 RING-finger-containing 98.5 2.5E-05 5.4E-10 74.0 20.5 245 262-517 183-461 (463)
323 KOG3617 WD40 and TPR repeat-co 98.5 3.2E-06 7E-11 86.8 15.1 109 276-389 19-131 (1416)
324 PF14583 Pectate_lyase22: Olig 98.5 0.00013 2.8E-09 70.8 25.2 253 324-580 42-363 (386)
325 KOG1275 PAB-dependent poly(A) 98.5 3.3E-06 7.1E-11 87.6 15.1 183 328-515 146-340 (1118)
326 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00055 1.2E-08 61.5 26.9 259 285-558 24-298 (354)
327 PRK02888 nitrous-oxide reducta 98.5 0.0001 2.2E-09 75.8 24.9 227 287-518 69-405 (635)
328 KOG1275 PAB-dependent poly(A) 98.4 5.9E-06 1.3E-10 85.8 15.9 180 283-470 146-341 (1118)
329 KOG0882 Cyclophilin-related pe 98.4 2.3E-06 5.1E-11 81.8 11.3 248 315-565 7-310 (558)
330 cd00216 PQQ_DH Dehydrogenases 98.4 0.00038 8.3E-09 72.7 28.7 268 284-569 61-433 (488)
331 PF08513 LisH: LisH; InterPro 98.4 4.5E-07 9.7E-12 51.6 3.8 27 64-90 1-27 (27)
332 PF06433 Me-amine-dh_H: Methyl 98.4 0.00094 2E-08 63.7 27.1 242 277-527 40-330 (342)
333 PF11768 DUF3312: Protein of u 98.3 0.00027 5.8E-09 71.0 24.2 119 361-479 207-337 (545)
334 KOG3621 WD40 repeat-containing 98.3 0.00012 2.5E-09 74.6 21.5 118 271-390 32-155 (726)
335 KOG2066 Vacuolar assembly/sort 98.3 2.2E-05 4.7E-10 80.8 16.6 182 360-561 40-234 (846)
336 KOG1008 Uncharacterized conser 98.3 4.7E-07 1E-11 90.3 3.5 242 318-561 57-336 (783)
337 KOG0396 Uncharacterized conser 98.3 1.1E-05 2.4E-10 75.7 12.0 121 62-182 114-240 (389)
338 KOG2066 Vacuolar assembly/sort 98.3 2.2E-05 4.8E-10 80.8 15.1 181 318-517 40-233 (846)
339 KOG1008 Uncharacterized conser 98.2 4.2E-07 9.1E-12 90.6 1.6 198 272-472 56-276 (783)
340 PF11768 DUF3312: Protein of u 98.2 3.9E-05 8.3E-10 76.9 14.5 116 274-392 207-332 (545)
341 COG3391 Uncharacterized conser 98.2 0.004 8.7E-08 62.8 29.1 258 274-540 32-309 (381)
342 smart00667 LisH Lissencephaly 98.2 3.1E-06 6.7E-11 52.1 4.2 32 62-93 2-33 (34)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.00044 9.5E-09 70.2 21.5 224 266-517 26-262 (443)
344 cd00216 PQQ_DH Dehydrogenases 98.1 0.0019 4.1E-08 67.5 27.1 238 285-527 111-434 (488)
345 COG0823 TolB Periplasmic compo 98.1 0.00044 9.6E-09 69.9 21.4 195 340-542 174-382 (425)
346 PRK02888 nitrous-oxide reducta 98.1 0.00065 1.4E-08 70.1 22.3 216 280-506 200-450 (635)
347 PF02897 Peptidase_S9_N: Proly 98.1 0.0062 1.3E-07 62.5 30.1 241 320-565 126-409 (414)
348 PF06433 Me-amine-dh_H: Methyl 98.1 0.01 2.2E-07 56.9 28.6 266 294-569 17-329 (342)
349 PF00780 CNH: CNH domain; Int 98.1 0.0035 7.6E-08 60.3 26.2 235 328-579 6-274 (275)
350 KOG3617 WD40 and TPR repeat-co 98.1 0.00018 4E-09 74.5 17.3 254 239-507 35-375 (1416)
351 PF04053 Coatomer_WDAD: Coatom 98.1 0.0024 5.1E-08 64.9 25.3 227 313-563 28-265 (443)
352 PF10607 CLTH: CTLH/CRA C-term 98.1 7.4E-06 1.6E-10 70.3 6.2 133 98-231 4-139 (145)
353 smart00668 CTLH C-terminal to 98.1 2.5E-06 5.5E-11 60.0 2.5 53 98-150 4-56 (58)
354 PF04841 Vps16_N: Vps16, N-ter 98.0 0.018 3.8E-07 58.6 31.0 259 278-567 34-321 (410)
355 COG0823 TolB Periplasmic compo 98.0 0.00053 1.2E-08 69.3 19.6 192 265-462 185-390 (425)
356 PF08596 Lgl_C: Lethal giant l 98.0 0.00087 1.9E-08 67.1 20.6 258 274-550 3-326 (395)
357 PF06977 SdiA-regulated: SdiA- 98.0 0.0061 1.3E-07 56.7 24.6 201 354-557 16-247 (248)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.017 3.8E-07 60.6 30.4 279 284-569 69-499 (527)
359 KOG3621 WD40 repeat-containing 98.0 0.00054 1.2E-08 70.0 18.1 135 316-450 32-179 (726)
360 PF06977 SdiA-regulated: SdiA- 98.0 0.0033 7E-08 58.5 21.7 199 266-468 15-247 (248)
361 PF00780 CNH: CNH domain; Int 97.9 0.013 2.9E-07 56.3 27.0 226 282-528 5-266 (275)
362 COG3391 Uncharacterized conser 97.9 0.007 1.5E-07 61.0 25.4 201 275-481 76-292 (381)
363 PF08596 Lgl_C: Lethal giant l 97.9 0.0022 4.7E-08 64.3 21.3 238 319-566 3-296 (395)
364 PF03178 CPSF_A: CPSF A subuni 97.9 0.0069 1.5E-07 59.7 24.8 212 339-556 2-261 (321)
365 PF04841 Vps16_N: Vps16, N-ter 97.9 0.021 4.6E-07 58.0 28.6 205 340-561 62-288 (410)
366 PF08553 VID27: VID27 cytoplas 97.9 0.014 3.1E-07 62.7 28.0 194 271-470 429-646 (794)
367 KOG1897 Damage-specific DNA bi 97.9 0.058 1.3E-06 57.9 31.1 282 272-561 530-899 (1096)
368 PF02897 Peptidase_S9_N: Proly 97.9 0.045 9.8E-07 56.2 31.5 240 274-522 125-409 (414)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.023 5.1E-07 56.8 26.7 85 442-527 308-408 (415)
370 KOG4441 Proteins containing BT 97.8 0.042 9.1E-07 58.3 29.4 228 282-519 283-548 (571)
371 PF03178 CPSF_A: CPSF A subuni 97.7 0.015 3.2E-07 57.4 22.5 179 284-468 42-262 (321)
372 KOG2444 WD40 repeat protein [G 97.6 6.1E-05 1.3E-09 66.4 4.6 145 416-563 33-180 (238)
373 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.12 2.6E-06 54.5 29.5 236 285-528 121-501 (527)
374 COG3386 Gluconolactonase [Carb 97.6 0.024 5.3E-07 54.7 21.9 217 279-507 31-275 (307)
375 smart00320 WD40 WD40 repeats. 97.6 0.00016 3.5E-09 45.0 5.0 38 263-300 3-40 (40)
376 COG3386 Gluconolactonase [Carb 97.5 0.074 1.6E-06 51.4 24.1 220 324-551 31-277 (307)
377 KOG4640 Anaphase-promoting com 97.5 0.00054 1.2E-08 69.1 9.6 95 270-368 18-114 (665)
378 smart00320 WD40 WD40 repeats. 97.5 0.00032 6.9E-09 43.6 5.6 39 519-558 2-40 (40)
379 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.01 2.2E-07 46.8 14.0 100 320-426 2-109 (111)
380 KOG4441 Proteins containing BT 97.4 0.016 3.5E-07 61.3 19.9 227 329-563 285-549 (571)
381 KOG4640 Anaphase-promoting com 97.4 0.00081 1.8E-08 67.9 9.3 93 317-410 20-114 (665)
382 PRK13616 lipoprotein LpqB; Pro 97.4 0.016 3.6E-07 61.3 19.7 182 273-465 350-562 (591)
383 PHA02713 hypothetical protein; 97.4 0.017 3.6E-07 61.4 19.5 224 295-529 273-545 (557)
384 KOG2079 Vacuolar assembly/sort 97.3 0.0068 1.5E-07 65.2 15.8 102 283-388 98-202 (1206)
385 COG3204 Uncharacterized protei 97.3 0.076 1.7E-06 49.3 19.8 161 313-473 81-265 (316)
386 PRK13616 lipoprotein LpqB; Pro 97.3 0.024 5.2E-07 60.1 19.2 148 316-471 348-525 (591)
387 PHA02713 hypothetical protein; 97.3 0.02 4.3E-07 60.8 18.6 186 370-564 303-537 (557)
388 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.29 6.2E-06 49.3 31.6 273 284-562 37-362 (418)
389 KOG4499 Ca2+-binding protein R 97.2 0.095 2.1E-06 46.9 18.9 144 402-550 109-275 (310)
390 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.045 9.8E-07 43.2 14.9 100 275-384 2-109 (111)
391 KOG2395 Protein involved in va 97.1 0.009 2E-07 59.4 13.1 141 328-471 344-500 (644)
392 PF14870 PSII_BNR: Photosynthe 97.1 0.32 6.9E-06 46.8 29.2 273 272-557 16-301 (302)
393 PF08553 VID27: VID27 cytoplas 97.0 0.0073 1.6E-07 64.9 12.6 135 421-559 502-646 (794)
394 COG3490 Uncharacterized protei 97.0 0.026 5.6E-07 51.9 13.8 188 279-470 120-347 (366)
395 PRK10115 protease 2; Provision 97.0 0.83 1.8E-05 49.9 32.8 239 273-520 127-397 (686)
396 COG3204 Uncharacterized protei 97.0 0.28 6E-06 45.8 20.1 184 357-541 83-295 (316)
397 KOG2817 Predicted E3 ubiquitin 96.9 0.0062 1.3E-07 58.5 9.9 101 65-167 118-229 (394)
398 PF05694 SBP56: 56kDa selenium 96.9 0.54 1.2E-05 46.7 23.2 196 283-478 86-349 (461)
399 KOG2395 Protein involved in va 96.9 0.0099 2.1E-07 59.1 10.8 138 419-559 352-499 (644)
400 PRK10115 protease 2; Provision 96.8 1 2.3E-05 49.2 30.0 237 319-563 128-397 (686)
401 PF05096 Glu_cyclase_2: Glutam 96.8 0.42 9.1E-06 44.5 25.4 193 351-548 35-249 (264)
402 COG3490 Uncharacterized protei 96.7 0.48 1E-05 43.9 20.2 234 321-559 71-347 (366)
403 PF14870 PSII_BNR: Photosynthe 96.7 0.64 1.4E-05 44.7 27.8 230 274-514 63-301 (302)
404 TIGR03074 PQQ_membr_DH membran 96.5 0.8 1.7E-05 50.2 23.2 195 329-525 194-485 (764)
405 COG5276 Uncharacterized conser 96.5 0.73 1.6E-05 43.0 26.6 193 272-473 86-287 (370)
406 PF07995 GSDH: Glucose / Sorbo 96.5 1 2.3E-05 44.4 27.1 57 498-555 270-330 (331)
407 KOG1916 Nuclear protein, conta 96.4 0.00039 8.4E-09 72.7 -2.1 131 266-430 126-264 (1283)
408 TIGR03118 PEPCTERM_chp_1 conse 96.4 0.91 2E-05 42.8 25.0 229 320-550 25-323 (336)
409 PF15390 DUF4613: Domain of un 96.4 0.19 4.1E-06 51.3 16.1 142 317-460 56-220 (671)
410 PHA03098 kelch-like protein; P 96.4 0.13 2.8E-06 54.7 16.4 186 282-473 293-513 (534)
411 PF10168 Nup88: Nuclear pore c 96.4 1.3 2.9E-05 48.1 23.7 26 318-343 85-110 (717)
412 PF05694 SBP56: 56kDa selenium 96.3 0.78 1.7E-05 45.7 19.7 177 281-460 138-392 (461)
413 PHA03098 kelch-like protein; P 96.3 0.14 3.1E-06 54.5 16.3 185 328-519 294-513 (534)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 0.36 7.9E-06 48.5 17.8 107 322-430 6-145 (415)
415 KOG2079 Vacuolar assembly/sort 96.2 0.019 4E-07 62.0 8.5 98 412-510 98-198 (1206)
416 PRK13684 Ycf48-like protein; P 96.1 1.6 3.5E-05 43.1 28.2 274 272-559 45-330 (334)
417 TIGR02604 Piru_Ver_Nterm putat 96.1 1.8 3.9E-05 43.5 22.9 140 319-460 15-202 (367)
418 KOG1897 Damage-specific DNA bi 96.1 2.9 6.2E-05 45.7 33.6 269 273-548 354-648 (1096)
419 PF12894 Apc4_WD40: Anaphase-p 96.1 0.021 4.6E-07 37.5 5.4 33 317-350 11-43 (47)
420 KOG2444 WD40 repeat protein [G 96.0 0.0056 1.2E-07 54.4 3.3 137 289-430 35-176 (238)
421 TIGR02604 Piru_Ver_Nterm putat 95.9 0.25 5.3E-06 49.7 14.8 145 273-420 14-202 (367)
422 PF12894 Apc4_WD40: Anaphase-p 95.8 0.035 7.6E-07 36.5 5.4 31 272-302 11-41 (47)
423 PF10647 Gmad1: Lipoprotein Lp 95.7 2 4.2E-05 40.6 21.2 144 274-423 25-187 (253)
424 PF15390 DUF4613: Domain of un 95.6 0.73 1.6E-05 47.2 16.2 155 403-563 21-189 (671)
425 PF10647 Gmad1: Lipoprotein Lp 95.5 1.1 2.5E-05 42.2 17.0 142 319-463 25-187 (253)
426 PHA02790 Kelch-like protein; P 95.5 0.88 1.9E-05 47.6 17.8 140 328-473 271-425 (480)
427 PHA02790 Kelch-like protein; P 95.4 0.88 1.9E-05 47.6 17.3 146 283-434 271-426 (480)
428 PF06588 Muskelin_N: Muskelin 95.3 0.021 4.5E-07 49.6 4.0 36 62-97 164-199 (199)
429 KOG2247 WD40 repeat-containing 95.2 0.0065 1.4E-07 59.8 0.8 240 321-565 38-285 (615)
430 KOG2377 Uncharacterized conser 95.2 3.3 7.2E-05 41.2 18.6 126 292-420 41-172 (657)
431 TIGR03074 PQQ_membr_DH membran 95.0 6.1 0.00013 43.6 22.4 196 371-567 194-484 (764)
432 KOG4499 Ca2+-binding protein R 94.9 2.9 6.3E-05 37.8 18.7 213 286-506 29-273 (310)
433 KOG3630 Nuclear pore complex, 94.8 0.24 5.2E-06 54.3 10.9 146 274-419 102-261 (1405)
434 COG5276 Uncharacterized conser 94.7 3.7 8E-05 38.5 23.5 150 318-473 87-243 (370)
435 KOG2247 WD40 repeat-containing 94.6 0.0043 9.4E-08 61.0 -2.2 148 404-557 37-185 (615)
436 PF12234 Rav1p_C: RAVE protein 94.5 2.1 4.6E-05 45.4 16.8 110 319-430 31-155 (631)
437 KOG3630 Nuclear pore complex, 94.5 0.37 8E-06 52.9 11.3 142 319-460 102-262 (1405)
438 PLN02153 epithiospecifier prot 94.5 5.7 0.00012 39.4 20.8 65 370-434 85-170 (341)
439 KOG2280 Vacuolar assembly/sort 94.2 4.8 0.0001 42.7 18.1 173 293-473 63-248 (829)
440 COG4257 Vgb Streptogramin lyas 94.2 4.8 0.00011 37.4 20.3 233 320-564 64-309 (353)
441 TIGR03118 PEPCTERM_chp_1 conse 94.1 5.5 0.00012 37.8 22.6 211 274-485 24-292 (336)
442 PLN02153 epithiospecifier prot 94.0 7 0.00015 38.8 23.5 149 283-434 32-228 (341)
443 PF05096 Glu_cyclase_2: Glutam 94.0 5.4 0.00012 37.3 22.8 180 274-460 46-249 (264)
444 KOG2280 Vacuolar assembly/sort 93.7 7.5 0.00016 41.4 18.3 196 339-541 64-271 (829)
445 TIGR03548 mutarot_permut cycli 93.7 7.8 0.00017 38.1 21.0 106 328-434 72-197 (323)
446 PF12234 Rav1p_C: RAVE protein 93.5 2.3 5E-05 45.1 14.8 112 273-388 30-155 (631)
447 KOG2377 Uncharacterized conser 93.3 1.5 3.2E-05 43.6 11.9 101 439-542 64-166 (657)
448 PLN02193 nitrile-specifier pro 93.2 8.2 0.00018 40.3 18.5 189 328-521 175-414 (470)
449 COG5167 VID27 Protein involved 93.1 0.95 2.1E-05 45.4 10.5 137 419-560 486-632 (776)
450 TIGR03548 mutarot_permut cycli 92.8 10 0.00023 37.2 19.8 104 370-473 72-196 (323)
451 PF08728 CRT10: CRT10; InterP 92.8 5.8 0.00013 42.7 16.6 145 284-430 49-245 (717)
452 COG3823 Glutamine cyclotransfe 92.7 6.9 0.00015 34.9 15.2 174 370-548 55-247 (262)
453 COG5167 VID27 Protein involved 92.7 7.8 0.00017 39.3 16.0 140 328-471 478-632 (776)
454 TIGR03547 muta_rot_YjhT mutatr 92.7 12 0.00025 37.3 20.6 53 370-422 63-128 (346)
455 PF10168 Nup88: Nuclear pore c 92.6 5.3 0.00012 43.6 16.4 99 358-478 83-186 (717)
456 PF10313 DUF2415: Uncharacteri 92.5 0.47 1E-05 30.2 5.0 31 318-348 1-34 (43)
457 PLN02193 nitrile-specifier pro 92.3 16 0.00035 38.1 19.8 106 328-434 228-354 (470)
458 PF10313 DUF2415: Uncharacteri 91.7 0.66 1.4E-05 29.6 5.0 31 273-303 1-34 (43)
459 PF14727 PHTB1_N: PTHB1 N-term 91.5 17 0.00037 36.8 27.8 144 328-471 36-204 (418)
460 KOG1898 Splicing factor 3b, su 91.5 27 0.00059 38.9 27.0 100 287-386 552-668 (1205)
461 PF07250 Glyoxal_oxid_N: Glyox 91.2 3.2 6.9E-05 38.5 11.1 143 383-527 48-207 (243)
462 PRK14131 N-acetylneuraminic ac 91.1 18 0.0004 36.4 20.7 53 370-422 84-149 (376)
463 PRK14131 N-acetylneuraminic ac 91.0 19 0.00041 36.3 22.5 39 382-421 190-230 (376)
464 PF07569 Hira: TUP1-like enhan 90.9 1.3 2.8E-05 40.7 8.3 65 496-562 19-97 (219)
465 COG4257 Vgb Streptogramin lyas 90.6 15 0.00032 34.4 23.9 237 274-518 63-306 (353)
466 PF09398 FOP_dimer: FOP N term 90.4 0.58 1.3E-05 34.7 4.5 31 65-95 20-50 (81)
467 PF07569 Hira: TUP1-like enhan 90.4 2.4 5.1E-05 39.0 9.5 63 409-472 18-96 (219)
468 KOG1916 Nuclear protein, conta 90.2 0.18 3.9E-06 53.8 2.3 71 488-560 184-265 (1283)
469 PF02333 Phytase: Phytase; In 90.1 22 0.00047 35.5 21.5 187 368-562 65-292 (381)
470 PF08801 Nucleoporin_N: Nup133 89.6 13 0.00029 38.1 15.5 32 442-473 190-221 (422)
471 COG5290 IkappaB kinase complex 89.3 17 0.00036 39.1 15.3 69 404-473 249-326 (1243)
472 KOG1983 Tomosyn and related SN 89.2 13 0.00028 42.5 16.0 29 274-302 37-65 (993)
473 KOG1898 Splicing factor 3b, su 89.1 42 0.00092 37.5 19.4 172 340-516 854-1047(1205)
474 COG1506 DAP2 Dipeptidyl aminop 89.0 38 0.00083 36.8 28.1 146 268-420 55-234 (620)
475 PF08728 CRT10: CRT10; InterP 88.8 4.9 0.00011 43.2 11.6 114 274-388 102-245 (717)
476 COG5290 IkappaB kinase complex 88.7 25 0.00054 37.9 16.1 32 357-388 110-141 (1243)
477 KOG4460 Nuclear pore complex, 88.6 9 0.00019 39.0 12.4 27 319-345 105-131 (741)
478 PF10395 Utp8: Utp8 family; I 88.1 41 0.00089 36.1 24.1 157 401-565 129-310 (670)
479 TIGR03547 muta_rot_YjhT mutatr 88.0 30 0.00064 34.4 21.4 41 381-421 168-209 (346)
480 PRK13684 Ycf48-like protein; P 87.9 30 0.00064 34.2 23.2 150 359-515 172-329 (334)
481 KOG1983 Tomosyn and related SN 87.6 20 0.00044 41.0 16.2 31 317-347 35-65 (993)
482 PF14761 HPS3_N: Hermansky-Pud 87.4 20 0.00044 32.3 12.8 102 285-389 29-163 (215)
483 PF11715 Nup160: Nucleoporin N 87.4 3.2 6.9E-05 44.4 9.6 76 282-357 156-258 (547)
484 PF13449 Phytase-like: Esteras 87.0 33 0.00071 33.8 21.5 102 360-461 20-166 (326)
485 PF13449 Phytase-like: Esteras 86.9 33 0.00072 33.7 18.0 107 272-379 19-166 (326)
486 KOG4460 Nuclear pore complex, 86.5 20 0.00043 36.7 13.4 92 361-473 105-200 (741)
487 COG4590 ABC-type uncharacteriz 86.4 4.5 9.7E-05 40.3 8.8 166 265-434 213-389 (733)
488 PF14781 BBS2_N: Ciliary BBSom 86.3 18 0.00038 29.9 13.3 111 408-522 5-130 (136)
489 KOG1900 Nuclear pore complex, 86.1 11 0.00023 43.0 12.4 166 258-432 65-273 (1311)
490 COG4590 ABC-type uncharacteriz 85.9 25 0.00055 35.2 13.5 158 401-565 220-391 (733)
491 KOG1900 Nuclear pore complex, 84.9 9.7 0.00021 43.3 11.5 136 337-473 97-274 (1311)
492 PF07995 GSDH: Glucose / Sorbo 84.5 33 0.00072 33.8 14.4 106 403-509 3-135 (331)
493 PF12657 TFIIIC_delta: Transcr 84.3 6.5 0.00014 34.6 8.4 105 446-557 9-118 (173)
494 PF12768 Rax2: Cortical protei 84.2 22 0.00047 34.0 12.3 93 339-431 16-123 (281)
495 PF12768 Rax2: Cortical protei 83.9 37 0.00079 32.5 13.7 90 381-470 16-122 (281)
496 KOG2006 WD40 repeat protein [G 83.6 13 0.00029 41.0 11.6 75 275-349 151-227 (1023)
497 PF07676 PD40: WD40-like Beta 83.3 5.8 0.00013 24.5 5.7 33 525-557 4-38 (39)
498 PF03088 Str_synth: Strictosid 83.2 9.4 0.0002 29.1 7.6 41 420-460 34-75 (89)
499 KOG2063 Vacuolar assembly/sort 82.9 86 0.0019 35.1 18.3 71 280-351 22-100 (877)
500 PF07676 PD40: WD40-like Beta 82.5 5.3 0.00011 24.7 5.2 31 269-299 5-38 (39)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-90 Score=628.12 Aligned_cols=512 Identities=50% Similarity=0.870 Sum_probs=481.2
Q ss_pred CCCccccccCcCCccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCHHHHHHHHHHHcCChHHHHHHhhcCCCCChh
Q 008011 48 SQGDEEKIGSKGVIKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSSVVNQFMQQVMDGYWDESIITLHMIGLSDET 127 (581)
Q Consensus 48 ~~~~~~~~~~~~~~~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~ 127 (581)
++|.-+.+|+|+.|.+.|++||++|+|+.+||.+|+.+||.|+|+.+++...+.|.++|++|+|+.++..+..++++++.
T Consensus 2 ~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~ 81 (519)
T KOG0293|consen 2 QNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDER 81 (519)
T ss_pred CCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchh
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhcccccccChhhHHHhhhccccCCcccccCCCCCCccchHHHHHHHHHH
Q 008011 128 AVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQINMSRVHELASCIISPSKSLTLGDSGQDTEDEKSRSKFLAKL 207 (581)
Q Consensus 128 ~~~~~~~~i~~q~~lell~~~~~~~a~~~l~~~l~pl~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 207 (581)
..+.+.|++.+|+|||++..|....|+..||++..++.++.+++++|+..+..++.....+. .........|.++++++
T Consensus 82 ~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~el 160 (519)
T KOG0293|consen 82 NRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDEL 160 (519)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987766533222211 11344567899999999
Q ss_pred HhcCCCCCCCCcchHHHHHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEE
Q 008011 208 QKLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL 287 (581)
Q Consensus 208 ~~~~~~~~~~p~~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~l 287 (581)
++++|+.+++|++||++|++||+.+|.+.|+||+..+ .++++.||.|.+..+|.+..+++..|+++||.+.||++|+||
T Consensus 161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsld-svsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyL 239 (519)
T KOG0293|consen 161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLD-SVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYL 239 (519)
T ss_pred HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccc-hhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeE
Confidence 9999999999999999999999999999999999887 599999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC-CCeEEEEE
Q 008011 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCG 366 (581)
Q Consensus 288 asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~ 366 (581)
|+++.|.+..||.+.....++..+++.+|..+|..+.||||+++|++|+.|..+++||+.+|.+.+.+... ...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 99999999999999888888899999999999999999999999999999999999999999998888644 67899999
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceE
Q 008011 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVIT 445 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~ 445 (581)
|.||+..+++|+.|+++..||+++.....|.......|.++++++||+++++.+.|..|++|+..+.. ........+|+
T Consensus 320 W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it 399 (519)
T KOG0293|consen 320 WCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT 399 (519)
T ss_pred EccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCcee
Confidence 99999999999999999999999999999998888889999999999999999999999999999888 44788899999
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
+++.|.|++++++.-.+..+++||+... ..+.++.||....+.|++||+..+..++++||+|+.|+||+..+|+++..+
T Consensus 400 s~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 400 SFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred EEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 9999999999999999999999999966 899999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 526 AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.||...|++|+|+|..+.++|+||+||+||||.....
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-66 Score=459.42 Aligned_cols=481 Identities=21% Similarity=0.342 Sum_probs=411.0
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCC-HHHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 008011 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHS-SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQ 139 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~~-~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~i~~q 139 (581)
|.+.+|+|||.|||+|+.++.++++||+|+++++|+ ..++.|.+.|.+|+||.++..++.+++|+..+.. +|||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL~d-----LYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKLID-----LYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHHHH-----HHHH
Confidence 456799999999999999999999999999999998 6899999999999999999999999999977766 9999
Q ss_pred HHHHHHhcCCHHHHHHHHhhccccc----ccChhhHHHhhhccccCCcccccCCCCCCc-cchHHHHHHHHHHHhcCCCC
Q 008011 140 KFLELLRRDKVSAALNSLRSEIVPL----QINMSRVHELASCIISPSKSLTLGDSGQDT-EDEKSRSKFLAKLQKLLPAS 214 (581)
Q Consensus 140 ~~lell~~~~~~~a~~~l~~~l~pl----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~r~~l~~~l~~~~~~~ 214 (581)
..+||+|.++...|+.+||+.- |+ +.+++|+.+|..++..+.++ ....+.. ..++.|..+.+.+... .
T Consensus 80 ivlEliELREL~tAR~~lRQTd-pM~~lKQ~~peRy~~lE~ll~R~YFD---p~EaY~dssKEkrRa~IAQ~ls~E---V 152 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTD-PMIMLKQIQPERYIRLENLLNRSYFD---PREAYGDSSKEKRRAVIAQALSGE---V 152 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccC-ceehhhccChHHHHHHHHHhcccccC---hhhhcCcchHHHHHHHHHHHhcCc---e
Confidence 9999999999999999999752 33 35789999999998876543 2222333 3355556666666543 3
Q ss_pred CCCCcchHHHHHHHHHHHccccceeccCCCCCceeeccCCC----Ccccccccceeeec-cccCcEEEEEEcCCCCEEEE
Q 008011 215 VVIPEKRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQC----GRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLAS 289 (581)
Q Consensus 215 ~~~p~~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g~~las 289 (581)
-++||+||..|+.|+++||.+..++++. ..+.+|..... ....+|.+..+.++ +.+..+-|..|||||+||++
T Consensus 153 ~VVppSRLlaLlGQaLKWQqHQGLLPPG--t~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvs 230 (508)
T KOG0275|consen 153 HVVPPSRLLALLGQALKWQQHQGLLPPG--TTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVS 230 (508)
T ss_pred EEcChHHHHHHHHHHhhhHhhcCCCCCC--ceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEee
Confidence 6889999999999999999999988654 45777765433 33556777776665 67788999999999999999
Q ss_pred EECCCeEEEEEcccCC-----eeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe-cCCCeEE
Q 008011 290 SSKDQSAIIWEVKEDG-----QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLI 363 (581)
Q Consensus 290 gs~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~ 363 (581)
|+.||.|.+|+..++. ++.....+.-+..+|.|+.|+.|...+|+|+.||.|+||.+++|.|++.|. .|...|+
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT 310 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence 9999999999987653 122334566789999999999999999999999999999999999999998 8899999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeeEe
Q 008011 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIE 439 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~ 439 (581)
|+.|+.|+..+++++.|.++++.-+.+++.......|...|+...|+++|..+++++.||+|++|+.++.. .+...
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 99999999999999999999999999988888888888899999999999999999999999999999877 23334
Q ss_pred cCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC
Q 008011 440 EEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 440 ~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+.+|+++-.-| +...++++...+++++.++.. +.++.+.......-..-.+..+|.|.++++.++|+.++.|.+.+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 566788888777 566899999999999999987 67888765544333333455599999999999999999999999
Q ss_pred CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 519 ~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|++..++..|+..|.+++.+|.. +++++-+.||.+++|.
T Consensus 469 G~LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred CceeeeeecccccccccccCccc-chhhhhcccchhhhcC
Confidence 99999999999999999999998 7999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-51 Score=372.31 Aligned_cols=325 Identities=21% Similarity=0.358 Sum_probs=292.0
Q ss_pred eeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC
Q 008011 248 SLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP 327 (581)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp 327 (581)
.+|......+.+.-.++...+.||.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+|
T Consensus 91 lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 91 LVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred EEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECC
Confidence 456666666667777888999999999999999999999999999999999999876 56688999999999999999
Q ss_pred CCCeEEEeeCCCcEEEEECCCCcEE-EEEecCCCeEEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc
Q 008011 328 NDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLISCGWFL-----DGGGIFAGMTDKSICLWDLDGRELESWKGQKT 401 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 401 (581)
||+.||+|+.||+|++||..+|+++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+........|.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT 247 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT 247 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc
Confidence 9999999999999999999998765 57889999999999986 67789999999999999999999888888999
Q ss_pred ccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEEC-----------CCCC--------------
Q 008011 402 LRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS-----------KDNK-------------- 454 (581)
Q Consensus 402 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s-----------p~~~-------------- 454 (581)
.+|+|+.|--+| ++++++.|++|++|+...+. ..+..|...|+.++.+ |.++
T Consensus 248 ~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 248 ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999999998665 89999999999999999876 6677888889888776 3333
Q ss_pred -----------EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 008011 455 -----------YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523 (581)
Q Consensus 455 -----------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 523 (581)
.|++|+.|.++.+|+-....+++.++.+|...+. .+.++||+++||++|.|..|++||-++|+.+.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn---~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN---HVSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee---eEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 4999999999999999887789999999998743 34449999999999999999999999999999
Q ss_pred EeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc-----ccCCCceEEecCCC
Q 008011 524 ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH-----RDQSNGIVHHCNGR 580 (581)
Q Consensus 524 ~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~-----~~~~~~~~~~~~G~ 580 (581)
+|++|-+.|+.++|+.|. ++|++||.|.++++|++.+.++.. .+.+.++-|+|||+
T Consensus 404 sfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 999999999999999999 799999999999999999998764 45588899999996
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-47 Score=352.51 Aligned_cols=318 Identities=21% Similarity=0.356 Sum_probs=270.5
Q ss_pred ccccccceeeeccccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCe-----eeEEEe------ecCCCCCeEEEEe
Q 008011 258 NRIPSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQ-----VSLKHR------LSGHRKPVFTVSW 325 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~-----~~~~~~------~~~h~~~V~~l~~ 325 (581)
..+|......+. |+.+|.+++|+|-.. .+++|+.|-+.++|++..... ..+.+. -......|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 346777777887 999999999999766 899999999999999874110 000111 1122357999999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEE
Q 008011 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 326 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 405 (581)
+.+|..||+|+.||.+++|+. +|..+.++..|.++|.++.|+.+|.+|++++.|+++.+||..+++.......+..+-.
T Consensus 244 n~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 999999999999999999995 5788899999999999999999999999999999999999999999888888876667
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 406 DMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
++.|-.+ ..+++.+.|+.|+++.+.... ..+..|.+.|.++.|.|.+.+|++++.|++++||..... .....+.+|
T Consensus 323 DVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~H 400 (524)
T KOG0273|consen 323 DVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAH 400 (524)
T ss_pred ceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhh
Confidence 7888755 468899999999999887655 778889999999999999999999999999999998776 778888999
Q ss_pred ccceeEEEeeeCCC------CCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 484 KRARFVIRSCFGGF------EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 484 ~~~~~~i~~~~~~~------~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
...++.+.+....| .+..+++++.|++|++||+..+.++..|..|..+|.+++|+|+| .++|+|+.||.|.||
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIW 479 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEec
Confidence 98876665533221 45679999999999999999999999999999999999999999 799999999999999
Q ss_pred cCCCcCcccccCCCc----eEEecCCC
Q 008011 558 GLDQINMKHRDQSNG----IVHHCNGR 580 (581)
Q Consensus 558 ~~~~~~~~~~~~~~~----~~~~~~G~ 580 (581)
+..++++.+....++ +.|+++|.
T Consensus 480 s~~~~~l~~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 480 STKTGKLVKSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred cccchheeEeecCCCeEEEEEEcCCCC
Confidence 999999988766444 45666664
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-47 Score=346.26 Aligned_cols=306 Identities=25% Similarity=0.495 Sum_probs=275.5
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
+...+.|..+.+|+.. ...++.+.++|...|.|++|+|||+.||+|+.||+|++||..++++ ....+.+|.
T Consensus 130 l~tGsGD~TvR~WD~~-------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH~ 200 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLD-------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGHK 200 (480)
T ss_pred EEecCCCceEEeeccC-------CCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--ccccccCcc
Confidence 4456677778888543 3446889999999999999999999999999999999999988763 457899999
Q ss_pred CCeEEEEeCC-----CCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008011 318 KPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 318 ~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 392 (581)
..|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+|+|+.|--+| ++++|+.|++|++|+...+.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh
Confidence 9999999987 56799999999999999999999999999999999999997554 89999999999999998888
Q ss_pred eEeeccCccccEEEEEEee-----------CC-------------------------CEEEEEEcCCeEEEEECCCCe--
Q 008011 393 LESWKGQKTLRISDMAITD-----------DG-------------------------KRIISICREAAILLLDREANF-- 434 (581)
Q Consensus 393 ~~~~~~~~~~~v~~i~~~~-----------~~-------------------------~~l~~~~~dg~i~i~d~~~~~-- 434 (581)
+......|...|+.++++. .+ ..+++|+.|.++.+|+.....
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 8888888888999998872 22 359999999999999987655
Q ss_pred -eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEE
Q 008011 435 -ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 435 -~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
.+...|...|+.+.||||++++++++-|..|++||.+++ +.+..|.+|-..+|.+.+ +.|.++|++||.|.++++
T Consensus 360 i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvaw---saDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 360 ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAW---SADSRLLVSGSKDSTLKV 435 (480)
T ss_pred hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEe---ccCccEEEEcCCCceEEE
Confidence 577889999999999999999999999999999999999 899999999998776654 778999999999999999
Q ss_pred EeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 514 WHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 514 wd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|++++.++...+.+|...|.++.|+||| ..+++|+.|..+++|.
T Consensus 436 w~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 436 WDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLWR 479 (480)
T ss_pred EEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEeec
Confidence 9999999999999999999999999999 7999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.1e-45 Score=335.02 Aligned_cols=281 Identities=21% Similarity=0.278 Sum_probs=263.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC--CCeEEEeeCCCcEEEEECC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~ 347 (581)
|-+.+|..+.||+|++.|||||.+|.++||+..+. ....++.+|...|.++.|+|. +..+|||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56789999999999999999999999999999765 567889999999999999996 6689999999999999999
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008011 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+...+..+.+|...|..++|+|+|++|++++.|.+-++||++++.......+|...|.+++|.+||..+++|+.|..-++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999999999888888889899999999999999999999999999
Q ss_pred EECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC-CCcEEEE
Q 008011 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF-EQAFIAS 504 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s 504 (581)
||++++. ..+..|..+|.+++|+|+|..|++|+.|++++|||++.. ..+..+.+|.+.+..++. +| .|.+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~---~p~~g~fL~T 405 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKY---SPQEGYFLVT 405 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhheEe---cccCCeEEEE
Confidence 9999998 455689999999999999999999999999999999998 668889999887655443 54 8999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++.|++++||...++.++.++.||++.|.+++.+|++ +.++|++.|.++++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999 7999999999999996
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.8e-42 Score=301.54 Aligned_cols=292 Identities=21% Similarity=0.336 Sum_probs=264.9
Q ss_pred ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
+..+..++|+||.+.|.++.|++|.++++++|.||.+.|||.-+.++ .+.+.-....|..++|+|.|+++|+|+-|+
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK---~haipl~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK---VHAIPLPSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc---eeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence 33455689999999999999999999999999999999999987643 355666778899999999999999999999
Q ss_pred cEEEEECCCC------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-C
Q 008011 340 AIRRWDVNSG------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-D 412 (581)
Q Consensus 340 ~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~ 412 (581)
...||++.+. ...+.+.+|.+.+.|+.|.+ ..+|++++.|.+..+||+++++.......|.+.|.+++++| +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999999865 34567889999999999876 66999999999999999999999999999999999999999 9
Q ss_pred CCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008011 413 GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
++.+++|+.|+..++||++.+. ..+..|...|+++.|.|+|.-+++|+.|++.++||++.. ..+..|. +......+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys-~~~~~~gi 276 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYS-HDSIICGI 276 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeec-cCcccCCc
Confidence 9999999999999999999987 778899999999999999999999999999999999997 6666666 44555567
Q ss_pred EeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
..+.++..|++|++|..|..+.+||.-.++.+..+.+|...|.++..+||| ..++|||.|.++|||.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 777779999999999999999999999999999999999999999999999 6999999999999994
No 8
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.8e-42 Score=321.69 Aligned_cols=299 Identities=22% Similarity=0.383 Sum_probs=273.5
Q ss_pred CcccccccceeeeccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEE
Q 008011 256 GRNRIPSQTLQILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT 334 (581)
Q Consensus 256 ~~~~~~~~~~~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s 334 (581)
....+|.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++...+ .+++++.+|..+|..++|+++|..+++
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeee
Confidence 345679999999999999999999999 89999999999999999998633 688999999999999999999999999
Q ss_pred eeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCC
Q 008011 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
++.|+.|++||+++|+++..+... ..++|+.|.|++ +.+++|+.|+.|+.||++++++......|-..|..+.|-++|
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred eecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence 999999999999999999988654 478899999988 789999999999999999999999899998999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC--ceeEEEecccccee
Q 008011 414 KRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--KLVSRYKGHKRARF 488 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 488 (581)
+++++.+.|+++++|+.+... ...........++..+|+++++++-+.|+.|.+|.+.... ...+.+.+|....+
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 999999999999999999877 2233455667899999999999999999999999975432 34567899999999
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+.+-| +|||.+|++|+.||.+++||.++.+++..+++|++++..+.|+|..+..+||||.||.|++|+
T Consensus 435 s~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 998888 999999999999999999999999999999999999999999999989999999999999996
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5e-39 Score=281.45 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=249.9
Q ss_pred ceeeeccccCcEEEEEEcCC-CCEEEEEECCCeEEEEEcccCCe--eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...++++|++.|+.++..+. ...+++++.|.++.+|++..... -...+.+.||...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 35689999999999999986 45899999999999999875422 1357889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc-cccEEEEEEeeC--CCEEE
Q 008011 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDD--GKRII 417 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~--~~~l~ 417 (581)
+++||+.+++..+.|.+|...|.+++|++|++.+++|+.|.+|++|++-+.......... ...|+|+.|+|+ ...|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999888777766654 679999999998 67999
Q ss_pred EEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeC
Q 008011 418 SICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
+++.|++|++||+++.+ ..+..|.+.++.+++||||...++|+.||.+.+||++.+ +.+..+.. .. .+.++.+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a-~~---~v~sl~f 241 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEA-FD---IVNSLCF 241 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccC-CC---eEeeEEe
Confidence 99999999999999988 677889999999999999999999999999999999987 44444432 22 3555666
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEecc----C-----cCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAG----H-----SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~----h-----~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+|+...|+.+.. ..|+|||+.++.++..+.. . .....+++|+++| ..|+++-.|+.|++|.+..
T Consensus 242 spnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 242 SPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEeec
Confidence 888766665554 4599999999988776652 1 2235678999999 7999999999999998753
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-39 Score=285.24 Aligned_cols=291 Identities=25% Similarity=0.449 Sum_probs=254.3
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++... .+-...+++|.++|..+.|.+|++.|++++.|.+|+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 346678899999999999999999999999999999997633 244567789999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
.||+++|++++.++.|..-|..+.-..-| ..+.+|+.|+++++||++.+.......... +++++.|..++..+++|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEEEEEecccccceeeccc
Confidence 99999999999999999999888844333 356678899999999999877766654443 8999999999999999999
Q ss_pred CCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC---CceeEEEecccc--ceeEEEeee
Q 008011 422 EAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---PKLVSRYKGHKR--ARFVIRSCF 494 (581)
Q Consensus 422 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~--~~~~i~~~~ 494 (581)
|+.|++||++... ....+|..+|+.+..+|+|.++++.+.|.++++||++.. ...+..+.+|.. ....+. |.
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~-cs 273 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK-CS 273 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce-ee
Confidence 9999999998877 667789999999999999999999999999999999753 245777777654 233344 45
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|+|++.++.+|+.|..+++||..+...+..+.||.+.|++++|+|.. .+|.+++.|.+|++=.
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE 336 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence 59999999999999999999999989999999999999999999999 5999999999998743
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.9e-38 Score=269.03 Aligned_cols=275 Identities=20% Similarity=0.343 Sum_probs=240.8
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc--EEEEEecCCCeE
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGL 362 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v 362 (581)
-+|+++|.|.+|++|...++ .+..++....+.|+.+...|+++.||+++.. .|++||++++. ++.+|.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCce
Confidence 38999999999999999988 6778888888899999999999999998864 89999998875 588999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEe
Q 008011 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~ 439 (581)
+.+.|..+|+.+++|+.||+++|||++........... .+|+++..+|+...|+++..+|.|++||+.... .....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 99999999999999999999999999986555555544 699999999999999999999999999999885 23334
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-----CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEE
Q 008011 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
....|.++...|||++++.+...|..++|++-+. ..++.++..|... .+++.+ +|++++|+++|.|.+++||
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEE
Confidence 5678999999999999999999999999998653 2456667777765 344444 9999999999999999999
Q ss_pred eCCCC-ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccccc
Q 008011 515 HRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 515 d~~~~-~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
+.++. +....+.+|...+.+.+||.++ .+|+||+.|+.+++|++..++.....
T Consensus 243 n~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCceeeec
Confidence 99887 6778899999999999999999 79999999999999999998865443
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=267.92 Aligned_cols=287 Identities=24% Similarity=0.409 Sum_probs=242.4
Q ss_pred ceeeeccccCcEEEEEEcCC-CCEEEEEECCCeEEEEEcccCCeeeEEEee-cCCCCCeEEEEeCCCCCeEEEeeCCCcE
Q 008011 264 TLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
.++.+++|++.|+.++|+|- |..||||+.|+.|+||+...+..+.+...+ .+|...|+.++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46788999999999999998 889999999999999999865566666555 4799999999999999999999999999
Q ss_pred EEEECCCC--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC---CeeEeeccCccccEEEEEEeeCCCEE
Q 008011 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 342 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
.||.-..+ +++.++++|...|.|++|+++|++|++++.|+.|-+|.+.. .+.......|...|..+.|+|....|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986644 68889999999999999999999999999999999999963 34566677888899999999999999
Q ss_pred EEEEcCCeEEEEECC-CCe----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 417 ISICREAAILLLDRE-ANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~-~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++++.|++|++|+-. ... ..+..+...|.+++|++.|..|++++.|++++||...+. .-..|....+.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP 240 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeee
Confidence 999999999999877 332 555677889999999999999999999999999986542 1123445555444
Q ss_pred eeeCCCCCcEEEEEeCCCcEEEEeCCCC------ceEE-EeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 492 SCFGGFEQAFIASGSEDSQVYIWHRYTG------ELVL-ALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~------~~~~-~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++ ...|++++.|+.|++|..... +.+. .-..|...|++++|+|..+++|++|++||.|++|.+.
T Consensus 241 W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD-----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec-----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 43 457999999999999975542 1122 3346889999999999766899999999999999875
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=298.40 Aligned_cols=246 Identities=20% Similarity=0.282 Sum_probs=229.9
Q ss_pred cceeeeccccCcEEEEEEcCC--CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 263 QTLQILEAHSDEVWFLQFSHD--GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~--g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+.+++|.||++.|.++.|+|. +.-||||+.||++++|++.+. .++..+.+|...|..++|+|+|++|+|++.|.+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cchhhhhcchhhheeeeecCCCceeeecccccc
Confidence 468899999999999999996 568999999999999999865 567889999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
-++||++++..+....+|..+|.+++|.+||..+++|+.|..-+|||++++...-+...|..+|.+++|+|+|..+++|+
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred cCCeEEEEECCCCe--eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC
Q 008011 421 REAAILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
.|++++|||++... .....|..-|+.+.|+| .|.+|++++.|+++++|...+. .+++.+.||...+.. +..++
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~s---~Dis~ 440 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVIS---LDISP 440 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcCCccceEE---EEecc
Confidence 99999999999877 56678999999999999 7889999999999999999998 899999999998544 44489
Q ss_pred CCcEEEEEeCCCcEEEEe
Q 008011 498 EQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd 515 (581)
++.++++++.|.++++|.
T Consensus 441 d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCceEEEeccCceeeecc
Confidence 999999999999999995
No 14
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=265.95 Aligned_cols=292 Identities=23% Similarity=0.387 Sum_probs=262.0
Q ss_pred cccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC
Q 008011 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
..|.+....+.+|.++|..+.|+-||+|.++|+.|.+|++|+...+ .+++++.+|...|..++.+.|+..|++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 3566778899999999999999999999999999999999999876 6889999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--eEeeccCccccEEEEEEeeCCCEE
Q 008011 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
..+.+||+++|+..+.+.+|...|..+.|+.+...+++|+.|.++++||.++.. ..+........|.++.++ +..|
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEI 158 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEE
Confidence 999999999999999999999999999999999999999999999999997643 444444555578887775 5689
Q ss_pred EEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
++|+.||+++.||++.+....-....+|++++|++|++..++++.|+++++.|-.++ +++..+++|....+.+.+++ .
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l-~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL-N 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee-c
Confidence 999999999999999999777778899999999999999999999999999999998 99999999999999999988 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCC-EEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS-VNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.....+++|++||.|++||+.....+..+..|... |.+++++|.-. -++++.. +.+..|.-
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITATG-HGDLFWYQ 298 (307)
T ss_pred ccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEecC-Cceeceee
Confidence 67789999999999999999999999999988887 89999999885 4555543 45666643
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=298.13 Aligned_cols=348 Identities=19% Similarity=0.364 Sum_probs=281.0
Q ss_pred HHHHHccccceeccCCCCCceeeccCCCCc-ccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe
Q 008011 228 KALDVQRDSCLFHNTSDSDFSLYSDHQCGR-NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (581)
Q Consensus 228 q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~ 306 (581)
.++++.++.-+|.......+.+|......+ ...|.....++.+|-+.|+++.|+.|.++|++||.|-+++||.++....
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 356667777777777777778886555444 4457777889999999999999999999999999999999999986544
Q ss_pred eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC-----------------------CcE------------
Q 008011 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-----------------------GEC------------ 351 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-----------------------~~~------------ 351 (581)
-....+.+|.++|.++-|..+...+++.+.||.+.+|.... ++.
T Consensus 180 -~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 180 -LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred -cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 34567899999999999999999999999999999997650 110
Q ss_pred -----------------------------------------EEEEecCCCeEEEEEEecCCCeEEEEeCC-CcEEEEeCC
Q 008011 352 -----------------------------------------LHVYEKTGVGLISCGWFLDGGGIFAGMTD-KSICLWDLD 389 (581)
Q Consensus 352 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~iwd~~ 389 (581)
++.+.....+|..++|+..|.+++.|+.. |.+.+|+..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 00001112334455555556666655543 566677766
Q ss_pred CCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008011 390 GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 390 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
+....-....|...+++++++|||+++++|+.||.|++||...+. ..+..|...|+.+.|+..++.+++.+.||+|+.
T Consensus 339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 655555556777899999999999999999999999999999987 778899999999999999999999999999999
Q ss_pred EEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEE
Q 008011 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
||+... ...++|....... ..+....|.|.++++|+.|. .|++|++++|+++..+.||+++|.+++|+|.+ ..|+
T Consensus 419 wDlkRY-rNfRTft~P~p~Q--fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~La 494 (893)
T KOG0291|consen 419 WDLKRY-RNFRTFTSPEPIQ--FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLA 494 (893)
T ss_pred eeeccc-ceeeeecCCCcee--eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEE
Confidence 999887 7777887766543 33555588899999999987 89999999999999999999999999999999 7999
Q ss_pred EEECCCcEEEEcCCCcC-----cccccCCCceEEecCCC
Q 008011 547 SASDDRTIRIWGLDQIN-----MKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~-----~~~~~~~~~~~~~~~G~ 580 (581)
|+|+|.+||+|++-... +.......++.|+|||+
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 99999999999996542 22344578889999986
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=290.77 Aligned_cols=283 Identities=18% Similarity=0.349 Sum_probs=247.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
-+..|..+.|.|+|+.|++|+..|.+.+|+... +.....+..|..+|+++.|++++.++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 456899999999999999999999999999742 34445678999999999999999999999999999999976443
Q ss_pred EEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008011 351 CLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
++.+..| ...|++++|+|+...|++++.||+|+|||....+.......|.-.|.+++|+|....+++++.|..|++||
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4444444 58999999999999999999999999999987766666678888999999999999999999999999999
Q ss_pred CCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC
Q 008011 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
.+++. .....|...|..+.|+|++++|++++.|..++++|+++. +.+..+.+|...+..+.+. +-...++.+|+.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~Wh--P~~~~lftsgg~ 327 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWH--PLNESLFTSGGS 327 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccc--cccccceeeccC
Confidence 99998 566788999999999999999999999999999999966 7788899998875554333 345679999999
Q ss_pred CCcEEEEeCCCCceEEEe-ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 508 DSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
||.|..|.+...+++..+ .+|...|++++|+|-| ++|++|+.|.++++|.-..
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCC
Confidence 999999999866665554 4799999999999999 8999999999999998653
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.3e-36 Score=281.90 Aligned_cols=309 Identities=21% Similarity=0.378 Sum_probs=256.6
Q ss_pred ccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCC
Q 008011 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (581)
..+.|..+.+| ...|++...++..|..-|.|+.|+|||.++||++.||+|.|||-.++..+..+..-.+|.+.
T Consensus 165 T~sdDn~v~ff-------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 165 TGSDDNTVAFF-------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred eccCCCeEEEe-------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc
Confidence 34455555555 34578888899999999999999999999999999999999999988666555445599999
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEE-------------------------------------------Ee
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-------------------------------------------YE 356 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~ 356 (581)
|.+++|+||+..++|++.|.+++|||+.+.+++++ +.
T Consensus 238 IfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 99999999999999999999999999987664443 34
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeec------------c--------------------------
Q 008011 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK------------G-------------------------- 398 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~------------~-------------------------- 398 (581)
+|...|+++..++++++|++|+.||.|.-|+...+....+. .
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccc
Confidence 68889999999999999999999999999998532211110 0
Q ss_pred -------------------------------------------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008011 399 -------------------------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 399 -------------------------------------------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
.-.....+++++|+++.+++|+.|+.|++|.+....
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 001134578899999999999999999999998755
Q ss_pred ---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcE
Q 008011 435 ---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 435 ---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
.....|..+|+++++|||+.+|+++...+.+.+||+.+.......+.-|... +.++.|+|+..++|+|+-|-.|
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak---I~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK---INCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee---EEEEEeCCCceEEEeccccceE
Confidence 4677899999999999999999999999999999999875555556667765 5667779999999999999999
Q ss_pred EEEeCCCCc-eEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 512 YIWHRYTGE-LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 512 ~iwd~~~~~-~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.||+++... .+....+|...|+.+.|-.+. .+++.|.|..|++|++.
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence 999987643 355556798889999998765 79999999999999874
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=309.24 Aligned_cols=293 Identities=30% Similarity=0.491 Sum_probs=262.2
Q ss_pred eeeeccc-cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 265 LQILEAH-SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h-~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...+.+| ...|.|+.|+++|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5556555 88999999999999999999999999999965432 255667899999999999999999999999999999
Q ss_pred EEC-CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 344 WDV-NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++|++||+++++.......|...|++++|+++++.|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568999999999999999999999999999999999999999999888888888899999999999999999999
Q ss_pred CeEEEEECCCCee----eeEecCC--ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 423 AAILLLDREANFE----RWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 423 g~i~i~d~~~~~~----~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
+.|++||+.++.. ....+.. +++++.|+|++.++++++.|+.+++||+... .....+.+|......+......
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccccc
Confidence 9999999999882 2233333 5899999999999999999999999999987 7888888888864455445557
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-cCCEEEEEEcCCCCcEEEEEE--CCCcEEEEcCC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPANLHMLASAS--DDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~~p~~~~~l~s~s--~Dg~I~iW~~~ 560 (581)
+.+.++++|+.|+.|++||..++..+..+.+| ...+..++|+|.. .++++++ .|+.|++|..+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 89999999999999999999999999999999 8999999999998 6999998 79999999865
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-36 Score=276.21 Aligned_cols=290 Identities=18% Similarity=0.312 Sum_probs=266.9
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcE
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
....+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++ .+...+++|.+.|..++|+..|+++++|+.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 3556788899999999999999999999999999999999876 4578899999999999999999999999999999
Q ss_pred EEEECCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 342 RRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 342 ~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
++||..+ .++++.+.+|...|.+++|.|.|.++++++.|.+|+.|++.++........|...|..+..+.||..+++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 577888889999999999999999999999999999999999988888888888999999999999999999
Q ss_pred cCCeEEEEECCCCe--eeeEecCCceEEEEECCC---------------CCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 421 REAAILLLDREANF--ERWIEEEEVITSFSLSKD---------------NKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
.|.+|++|-..++. ..+..|+.+|.+++|-|. +.++.+++.|++|++||+.++ .++.++.+|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~gh 333 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGH 333 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecc
Confidence 99999999999985 667788999999998763 258999999999999999999 899999999
Q ss_pred ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
... ++...++|.|+||+++.+|+++++||++++++...+..|..-|++++|+.+.+ +++||+-|.++++|..
T Consensus 334 dnw---Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNW---VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cce---eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 987 44445599999999999999999999999999999999999999999999985 9999999999999974
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.5e-37 Score=275.75 Aligned_cols=300 Identities=16% Similarity=0.298 Sum_probs=265.6
Q ss_pred cccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee
Q 008011 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG 336 (581)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~ 336 (581)
.+..|-+...++++|.+.|.|+++.|...+|+||+.|++|+|||+.++ .+..++.+|-..|..+++|+-..|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEec
Confidence 455677888899999999999999999999999999999999999987 67788999999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEE
Q 008011 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
.|+.|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||++++........|..+|..+.+.|-...+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred EEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008011 417 ISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
++++.|++|++||++.+. .....|...+.+++.+|....+++++. ..|+-|++..+ ..+..+.+|...+..+.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g-~f~~nlsgh~~iintl~--- 367 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEG-EFLQNLSGHNAIINTLS--- 367 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCcc-chhhccccccceeeeee---
Confidence 999999999999999988 667788999999999999988888874 46899999887 66666888887644433
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--------CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--------HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
.....++++|+++|.|.+||.++|...+.... .+..|.+.+|...| ..|+||..|.+|++|.-++.-...
T Consensus 368 -~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 368 -VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred -eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC-ceEEeccCCcceEEEecccccCcc
Confidence 33456889999999999999999866554421 24578999999999 699999999999999876554443
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.5e-36 Score=256.54 Aligned_cols=288 Identities=18% Similarity=0.321 Sum_probs=247.4
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
+...+.|..+.+|... ...+..++....+.|+.+.+.||+++||+++. ..|++||+.++.. .++.++.+|.
T Consensus 13 LvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~ 83 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHT 83 (311)
T ss_pred EEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccC
Confidence 3455667777777644 45678888888889999999999999999875 5699999998654 3778899999
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-Eee
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESW 396 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~ 396 (581)
+.|+++.|..+|+.+++|+.||+++|||++...+.+.+. +..+|+++..+|+...|++|..+|.|++||+..... ...
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 999999999999999999999999999999977777664 458999999999999999999999999999987643 333
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 397 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.......|.++...|||..++++...|..++|++-+.. .++..|.+.+..+.+|||+++|++++.|.+++||
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 34444689999999999999999999999999987654 4566789999999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEc
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~ 538 (581)
+.++..+....+.+|... ...+.| +.++.||++|+.|+.+++|++..++.+....+|.....|++.+
T Consensus 243 n~~~~~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999876667778888755 333444 8999999999999999999999999999999998888887764
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.8e-35 Score=283.98 Aligned_cols=286 Identities=30% Similarity=0.491 Sum_probs=251.3
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
++++++|.++|++++|+|++++|++++.||.+++|++.++. ....+..|...+..+.|+|+++++++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 35677999999999999999999999999999999998653 456677899999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008011 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
|+.+++....+..|...+.++.|++++..+++++.++.|.+||+.+.........+...+.+++|+|++.++++++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 99998888888889889999999999888888888999999999876665555566668999999999988888888999
Q ss_pred EEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEE
Q 008011 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|++||+++.. ..+..+...+.++.|+|+++.+++++.++.|++||+... ..+..+..+... +..+.+++++.++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~~ 234 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG---VNSVAFSPDGYLL 234 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc---eEEEEEcCCCcEE
Confidence 9999998665 445566778999999999999999999999999999876 666777666654 3334447788899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
++++.||.|++||+.+++....+..|...|.+++|+|++ .++++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 998889999999999999999999999999999999998 6999999999999996
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-35 Score=275.52 Aligned_cols=278 Identities=21% Similarity=0.365 Sum_probs=250.2
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+..|++++|+.+|..||+|+.||.++||+... ....++..|.++|.++.|+.+|.+|++++.|+++.+||..+|+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 36899999999999999999999999999874 35577889999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
.+.+..|..+...+.|-. ...|++.+.|+.|+++.+..........+|.++|.++.|+|.|..|++++.|+++++|...
T Consensus 311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 999999988878899974 4588999999999999998766665555677899999999999999999999999999977
Q ss_pred CCe--eeeEecCCceEEEEECCCC---------CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc
Q 008011 432 ANF--ERWIEEEEVITSFSLSKDN---------KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 432 ~~~--~~~~~~~~~i~~~~~sp~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
... ..+..|...|..+.|+|+| ..+++++.|++|++||+..+ .++..|..|..+++.+.+ +|+|+
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvaf---S~~g~ 465 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAF---SPNGR 465 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEe---cCCCc
Confidence 655 6777899999999999965 56899999999999999998 889999999999776544 99999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
++|+|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+| ..|..+-.|+.+++-|++
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 999999999999999999999999886 4569999999999 788888899999998875
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=257.91 Aligned_cols=271 Identities=18% Similarity=0.302 Sum_probs=228.5
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR 317 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~ 317 (581)
++..+.|..+-+|.-+.. +..-..+++.++||...|..++.++||++.++++.|+++++||+.++ +..+.|.+|.
T Consensus 31 l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH~ 105 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGHT 105 (315)
T ss_pred EEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEecC
Confidence 445666766767765443 33345668899999999999999999999999999999999999987 5668899999
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC--CCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCCee
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~ 393 (581)
..|.+++|++|++.+++|+.|.+|++|++..+ +..++... ...|.|+.|+|+ ...|++++.|++|++||+++.++
T Consensus 106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 99999999999999999999999999998754 44444433 789999999997 78899999999999999999999
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 394 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
......|...++.++++|||..+++|+.||.+.+||++.++ .....+...|.+++|+|+.-.|+.+. +..|+|||+.+
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~ 263 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES 263 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence 99999999999999999999999999999999999999988 77788999999999999887776665 66699999998
Q ss_pred CCceeEEEe----cc---ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 473 DPKLVSRYK----GH---KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 473 ~~~~~~~~~----~~---~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
. ..+..+. +. ......+ .+.++++|..|++|-.|+.|++|.+.
T Consensus 264 ~-~~v~~l~~d~~g~s~~~~~~~cl-slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 K-AVVEELKLDGIGPSSKAGDPICL-SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred h-hhhhhccccccccccccCCcEEE-EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7 4444433 11 1123334 45559999999999999999999864
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.1e-36 Score=296.33 Aligned_cols=281 Identities=20% Similarity=0.347 Sum_probs=246.4
Q ss_pred cccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCC----------------------------eee
Q 008011 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----------------------------QVS 308 (581)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~----------------------------~~~ 308 (581)
+...|+-+..++..-...++|..|++|+.+||.|-.|..|++|.+.... .-.
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 4556777777887777899999999999999999999999999986310 012
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
...++.+|.++|..+.|+|+.++|++|+.|+++|+|.+.+..++..+++|..+|+++.|+|-|-+|++++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 33458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEE
Q 008011 389 DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
+..........|...|.|+.|+|+..++++|+.|.+|++||..++. ..+.+|.++|++++|||+|++|++|+.|+.|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 8888888888888899999999999999999999999999999988 66778999999999999999999999999999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCc------------------------eE
Q 008011 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE------------------------LV 522 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~------------------------~~ 522 (581)
+||+.++ .++..+.+|.+.++.+.+ +.+|..||+|+.|++|++||+..-. ++
T Consensus 603 iWDl~~~-~~v~~l~~Ht~ti~SlsF---S~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 678 (707)
T KOG0263|consen 603 IWDLANG-SLVKQLKGHTGTIYSLSF---SRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLL 678 (707)
T ss_pred EEEcCCC-cchhhhhcccCceeEEEE---ecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCccee
Confidence 9999998 889999999887665544 8899999999999999999975322 23
Q ss_pred EEeccCcCCEEEEEEcCCC
Q 008011 523 LALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 523 ~~l~~h~~~v~~l~~~p~~ 541 (581)
..+.....+|.++.|.-.+
T Consensus 679 gs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 679 GSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred eeeeecCceEEEEEEeccc
Confidence 3444455567777776654
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4e-35 Score=266.02 Aligned_cols=310 Identities=18% Similarity=0.236 Sum_probs=264.4
Q ss_pred ceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
.+.+|..|+++|.+++.+|+.+++|||+.|....||++.++. ....+.+|...|+++.|+.+|.+||||+.+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 467888999999999999999999999999999999998874 56788999999999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCC
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA 423 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 423 (581)
|+..++.....+...-..+.-+.|+|-+..|++|+.||.+.+|.+..+........|..++++-.|.|+|++++++..||
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 99999999888876777888999999999999999999999999988666667777888999999999999999999999
Q ss_pred eEEEEECCCCeeeeE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe--------ccccceeEEEe
Q 008011 424 AILLLDREANFERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK--------GHKRARFVIRS 492 (581)
Q Consensus 424 ~i~i~d~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~i~~ 492 (581)
+|++|++.++..... ......+++.++..+..++.|..++.+++.+..++ +.+.... .+......+.+
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCCCCccccccchhhhhhhhh
Confidence 999999999873222 23556788899999999999999999999888776 5555544 23333344555
Q ss_pred eeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc-----
Q 008011 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR----- 567 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~----- 567 (581)
..++..-.+.|+|+-||+|.|||+...++...+. |...|+.+.|-+ . .+|++++.||.|++||.++++++..
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c-chheeeccCceEEeeeccccceEEEEecCc
Confidence 5556667789999999999999998877665554 888999999999 4 5899999999999999999998854
Q ss_pred cCCCceEEecCCC
Q 008011 568 DQSNGIVHHCNGR 580 (581)
Q Consensus 568 ~~~~~~~~~~~G~ 580 (581)
...-.++.+++++
T Consensus 369 ~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 369 MGILDFALSPQKR 381 (399)
T ss_pred hheeEEEEcCCCc
Confidence 3456666677665
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=280.33 Aligned_cols=326 Identities=15% Similarity=0.330 Sum_probs=268.1
Q ss_pred cceeccCCCCCceeeccCCCCccccc-ccceeeeccccCcEEEEEEcCCCCEEEEEECC-CeEEEEEcccCCeeeEEEee
Q 008011 236 SCLFHNTSDSDFSLYSDHQCGRNRIP-SQTLQILEAHSDEVWFLQFSHDGKYLASSSKD-QSAIIWEVKEDGQVSLKHRL 313 (581)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~d-g~i~iwd~~~~~~~~~~~~~ 313 (581)
.|-||....-.+.-++........+| ..+++.+.--..+|..++|+..|.+||.|+.. |.+-||++.+. ..+...
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQ 346 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQ 346 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ceeeec
Confidence 34455555433444443333233334 45678888788899999999999999998755 89999999875 455667
Q ss_pred cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-Ce
Q 008011 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~ 392 (581)
++|...+++++++|||+++|+|+.||.|+|||..+|-|..+|..|...|+.+.|+..++.+++.+-||+|+.||+.. ..
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999965 44
Q ss_pred eEeeccCccccEEEEEEeeCCCEEEEEEcCC-eEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008011 393 LESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 393 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
...+.........|++..|.|..+++|+.|. .|++|++.+++ ....+|+++|.+++|+|++..|++++.|.+|++||
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 4555555555788999999999999998887 59999999999 56779999999999999999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--------------------Cc
Q 008011 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--------------------HS 529 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------------------h~ 529 (581)
+-.....+.++..... .+... +.|+|+-|++++-||.|.+||...+.....+.+ ..
T Consensus 507 if~s~~~vEtl~i~sd---vl~vs-frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD---VLAVS-FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG 582 (893)
T ss_pred eeccCceeeeEeeccc---eeEEE-EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence 9776455666554333 23333 399999999999999999999887655543322 23
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 530 GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 530 ~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
...+.+++++|| ..|++||....|+||++.++-+..+..
T Consensus 583 K~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 583 KTFTTICYSADG-KCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CceEEEEEcCCC-CEEEecCCcccEEEEECchhheeeeEE
Confidence 578999999999 799999999999999999988766543
No 28
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=254.10 Aligned_cols=357 Identities=21% Similarity=0.368 Sum_probs=274.2
Q ss_pred HHHHHHHH--hcCCCCCCCCcchHHHHHHHHHHHccccceeccCC---------CCCcee-ec-cCCCCcccccccceee
Q 008011 201 SKFLAKLQ--KLLPASVVIPEKRLEHLVEKALDVQRDSCLFHNTS---------DSDFSL-YS-DHQCGRNRIPSQTLQI 267 (581)
Q Consensus 201 ~~l~~~l~--~~~~~~~~~p~~rl~~l~~q~~~~q~~~~~~~~~~---------~~~~~l-~~-~~~~~~~~~~~~~~~~ 267 (581)
+++...+. ...|.....|++||..|+...+....+.-...... ...+.+ |+ +.+......+.-....
T Consensus 28 ~qiA~~lan~~~~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~y 107 (430)
T KOG0640|consen 28 SQIASALANATMTPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKY 107 (430)
T ss_pred HHHHHHHHHhhcCcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEE
Confidence 34444444 34567788899999999988877765544432221 112233 22 2222222333444667
Q ss_pred eccccCcEEEEEEcCCCCEEEEEECCCeEEEEEccc---------------CCeeeEEEeecCCCCCeEEEEeCCCCCeE
Q 008011 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 332 (581)
+..|+.++.+.+|||||.++|||+.|..|+|.|++. ...-.+++++..|...|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 889999999999999999999999999999999861 11225678899999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeec---cCccccEEEE
Q 008011 333 LTCGQEEAIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDM 407 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i 407 (581)
++++.|++|++||+......+.++ ....+|.++.|+|.|.++++|....++++||+++.+..... ..|...|+++
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V 267 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV 267 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence 999999999999997643332222 33568999999999999999999999999999986654332 3566789999
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCe-eee---EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 408 AITDDGKRIISICREAAILLLDREANF-ERW---IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~---~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
.+++.++..++++.||.|++||--++. ... -.....|.+..|..+++|+++.+.|..+++|.+.++ ..+..+.|.
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGA 346 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGA 346 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecC
Confidence 999999999999999999999987766 222 234567999999999999999999999999999998 788888766
Q ss_pred c---cceeEEEeeeCCCCCcEEEEEe-CCCcEEEEeCCCCceEEEe-ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 484 K---RARFVIRSCFGGFEQAFIASGS-EDSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 484 ~---~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
. .........| .....|++.-. ..+.+.-||.+++..+..+ -+|++.+..+..+|.++ .++|||+|-.+|+|-
T Consensus 347 g~tgrq~~rtqAvF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWY 424 (430)
T ss_pred Ccccchhhhhhhhh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeee
Confidence 2 2233344455 44555555544 3568999999988766554 47999999999999995 899999999999996
Q ss_pred CC
Q 008011 559 LD 560 (581)
Q Consensus 559 ~~ 560 (581)
-+
T Consensus 425 rr 426 (430)
T KOG0640|consen 425 RR 426 (430)
T ss_pred ec
Confidence 43
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.8e-34 Score=250.38 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=235.9
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC---CeeeEEEee
Q 008011 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL 313 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~---~~~~~~~~~ 313 (581)
-++..+.|+.+-+|+.+ +....+.+.-....|..++|+|.|+++|+|+-|+...||++.+. +.....+.+
T Consensus 69 ~ivSaSqDGklIvWDs~-------TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSF-------TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred eEEeeccCCeEEEEEcc-------cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 44567778788888654 34456667777889999999999999999999999999999743 234566789
Q ss_pred cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCe
Q 008011 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~ 392 (581)
.+|.+.+.|+.|-+ +..|+|++.|.+..+||+++|+.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.+.
T Consensus 142 ~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred cCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 99999999999987 56899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEe---cCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE---EEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 393 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
..+....|...|+++.|.|+|.-+++|+.|++.++||++... ...+. ...+|++++||..|++|++|..|.++.+|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 888888999999999999999999999999999999999977 33333 34579999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
|.-.+ +.+..+.+|.+.+..+ -.+|+|.-+++||.|..++||.
T Consensus 301 Dtlk~-e~vg~L~GHeNRvScl---~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 301 DTLKG-ERVGVLAGHENRVSCL---GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ecccc-ceEEEeeccCCeeEEE---EECCCCcEEEecchhHheeecC
Confidence 98877 8888999999985544 4489999999999999999994
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=283.38 Aligned_cols=297 Identities=20% Similarity=0.362 Sum_probs=247.5
Q ss_pred cceeeecc-ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC--eEEEeeCCC
Q 008011 263 QTLQILEA-HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEE 339 (581)
Q Consensus 263 ~~~~~l~~-h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~dg 339 (581)
+.+..++. |+++|.-++|+|.|..|++|+.|+.++|||+..+ .+.+.+.||.+.|.++.|+|+-. .|++|..|+
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG---YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC---EEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 56777887 9999999999999999999999999999999866 68899999999999999999654 589999999
Q ss_pred cEEEEECCCCc-EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeE----------------e-------
Q 008011 340 AIRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE----------------S------- 395 (581)
Q Consensus 340 ~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----------------~------- 395 (581)
++++||+.++. ++.++..|...|+++++.+|+..+++++.|..+.+||+...+.. .
T Consensus 172 ~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~ 251 (775)
T KOG0319|consen 172 TVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE 251 (775)
T ss_pred eEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce
Confidence 99999998654 47788899999999999999999999999999999987321100 0
Q ss_pred ec---c--------------------------------------------------------------------------
Q 008011 396 WK---G-------------------------------------------------------------------------- 398 (581)
Q Consensus 396 ~~---~-------------------------------------------------------------------------- 398 (581)
+. .
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~ 331 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF 331 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee
Confidence 00 0
Q ss_pred -------------------------------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-------------
Q 008011 399 -------------------------------QKTLRISDMAITDDGKRIISICREAAILLLDREANF------------- 434 (581)
Q Consensus 399 -------------------------------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------------- 434 (581)
+|...|.++....+|.+|++++.|.++++|.++.+.
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~ 411 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT 411 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc
Confidence 333345555544556667777777777777542210
Q ss_pred ---------------------------------------e------eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008011 435 ---------------------------------------E------RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 435 ---------------------------------------~------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
. ....|+..|++++++|+.+.+++|+.|.+.+||+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 0 0113667899999999999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEE
Q 008011 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
+... .....+.+|...++.+.+ ++..+.++|+|.|++|+||.+.+..++.++.||...|..+.|-.++ ..|+||+
T Consensus 492 le~~-~l~~vLsGH~RGvw~V~F---s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-~qliS~~ 566 (775)
T KOG0319|consen 492 LEQL-RLLGVLSGHTRGVWCVSF---SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-KQLISAG 566 (775)
T ss_pred ccCc-eEEEEeeCCccceEEEEe---ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-cEEEecc
Confidence 9966 899999999998666544 7888999999999999999999999999999999999999999999 7999999
Q ss_pred CCCcEEEEcCCCcCcccc
Q 008011 550 DDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 550 ~Dg~I~iW~~~~~~~~~~ 567 (581)
.||-|++|++++.++...
T Consensus 567 adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMT 584 (775)
T ss_pred CCCcEEEEeccchhhhhh
Confidence 999999999999987753
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.7e-33 Score=307.09 Aligned_cols=285 Identities=18% Similarity=0.308 Sum_probs=234.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC----Cee-eEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcE
Q 008011 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQV-SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAI 341 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----~~~-~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i 341 (581)
+.+|.+.|++++|+|+|++||+|+.|++|+||+.... ... .....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 100 1112233 346799999987 47899999999999
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEe-eCCCEEEEE
Q 008011 342 RRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT-DDGKRIISI 419 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~ 419 (581)
++||+.+++.+..+..|...|++++|+| ++..|++|+.||.|++||++++........+ ..+.++.|+ +++..+++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999876654444433 478999995 579999999
Q ss_pred EcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-----CceeEEEeccccceeEEE
Q 008011 420 CREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-----PKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~i~ 491 (581)
+.|+.|++||+++.. .....|...|.++.|. ++.++++++.|+.|++||+... ..++..+.+|......
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~-- 713 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF-- 713 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE--
Confidence 999999999998754 3456788899999997 7889999999999999999743 2467778888765433
Q ss_pred eeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-------------ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-------------AGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-------------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+.+++++.+|++|+.|+.|++|+......+..+ ..|...|.+++|+|++ ..|++|+.||.|+||+
T Consensus 714 -v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 714 -VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIKILE 791 (793)
T ss_pred -EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEEEEe
Confidence 344888999999999999999998765443222 2345679999999999 6999999999999998
Q ss_pred C
Q 008011 559 L 559 (581)
Q Consensus 559 ~ 559 (581)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-34 Score=287.46 Aligned_cols=250 Identities=19% Similarity=0.316 Sum_probs=225.6
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC-------------------------------cEEEEEecCC
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-------------------------------ECLHVYEKTG 359 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-------------------------------~~~~~~~~~~ 359 (581)
.++..-...++|..|++|+.+||.|..|..|++|.+... ....++-+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 334444567999999999999999999999999987631 1234567899
Q ss_pred CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eee
Q 008011 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW 437 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~ 437 (581)
++|..+.|+|+.++|++++.|+++++|.+++........+|..+|.++.|+|.|-++++++.|++-++|...... ..+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 999999999999999999999999999999988888788899999999999999999999999999999998866 667
Q ss_pred EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 438 IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 438 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..|...|.|+.|+|++.|+++|+.|.++++||+.++ ..++.|.||.+++.. ..++|+|++|++|+.||.|.+||+.
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~a---l~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTA---LAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEE---EEEcCCCceEeecccCCcEEEEEcC
Confidence 789999999999999999999999999999999998 889999999998544 4448999999999999999999999
Q ss_pred CCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++++..+.+|++.|.++.|+.+| .+||+||.|.+|++||+......
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999 79999999999999999765443
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=249.71 Aligned_cols=289 Identities=24% Similarity=0.375 Sum_probs=253.4
Q ss_pred eeeccccCcEEEEEEcC---CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 266 QILEAHSDEVWFLQFSH---DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~---~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++ ..+.++.+|.+.|+....+.+...-++++.|=+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 46679999999999986 8889999999999888777766 56689999999999999999888899999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe-eEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
|||.-+|..++.| .|...|..++|+.|.++|++|+.+..+++||++..+ .......|...|..+.|....+.+++.+.
T Consensus 85 vw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 85 VWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 9999999999888 567789999999999999999999999999997533 33344566679999999999999999999
Q ss_pred CCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc
Q 008011 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 422 dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
|++|++||.+++. ...+..+.+|+++.++++|++|.++. .+.|.+||..+- .+++.+..... +.+...+|+..
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~n----V~SASL~P~k~ 237 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCN----VESASLHPKKE 237 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCccc----cccccccCCCc
Confidence 9999999999998 77788899999999999999877654 788999999886 66666654433 44555689999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEe-ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++++|++|+.++.||..+|+.+..+ ++|-++|.|+.|+|+| .+.++||.||+|++|....++..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999886 8999999999999999 69999999999999999877654
No 34
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=268.71 Aligned_cols=299 Identities=22% Similarity=0.390 Sum_probs=257.5
Q ss_pred CCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeE
Q 008011 253 HQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL 332 (581)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 332 (581)
..+..+.+|+.....+..|.+.|..+.|-++...|++|+.|..|++|++... +.....++.+..++|+.+.|.++++++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~-k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE-KSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccc-hhhhhhhhhccCCCcceeeecCCCceE
Confidence 4556678899999999999999999999999999999999999999999754 356778889999999999999999999
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeC
Q 008011 333 LTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 412 (581)
++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+............ ..+.+|+.+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--
Confidence 99999999999999999999999999999999999887777999999999999999875544333322 256777766
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc--ceeE
Q 008011 413 GKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR--ARFV 489 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~ 489 (581)
...++++-.|++|++||.++.. ....+..+.|+++..++++..+++++.|.++.+.|+++. .+...+..... ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeecccccccccc
Confidence 5578888899999999998877 666777889999999999999999999999999999997 66666653321 1123
Q ss_pred EEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcC--CEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.+.+| +|++.|+++||.||.|+||++.++++...+..... .|++++|+|.| ..+++++.++.+.+|.
T Consensus 391 trvvf-Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVF-SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEE-CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence 34445 99999999999999999999999999988876544 59999999999 7899999999999994
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-32 Score=257.84 Aligned_cols=323 Identities=16% Similarity=0.253 Sum_probs=266.0
Q ss_pred ceeccCCCCCceeeccCCCCccc--ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeec
Q 008011 237 CLFHNTSDSDFSLYSDHQCGRNR--IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~ 314 (581)
+++...+...--+|....+..-+ -.......+..|...++-..|||.|.|+|+|...|+|+|||.... ...+..+++
T Consensus 22 ~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~ 100 (603)
T KOG0318|consen 22 IIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQ 100 (603)
T ss_pred eEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeee
Confidence 44555555555556544432211 122336678899999999999999999999999999999999743 344667788
Q ss_pred CCCCCeEEEEeCCCCCeEEEeeCC--CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCC
Q 008011 315 GHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~ 391 (581)
.-.++|..++|+++++.|++.+.. ...+++-.++|..+..+.+|...|.++.|-|... ++++|+.|++|.+|+=.-.
T Consensus 101 v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 101 VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred ecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence 889999999999999999888653 3344444457888999999999999999998765 4899999999999997777
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eee---EecCCceEEEEECCCCCEEEEEeeCCcEE
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW---IEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~---~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
+.......|..-|+|+.|+|||.++++++.||++.+||-.++. ..+ ..|.+.|..++|+||+..+++++.|.+++
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 7777777777799999999999999999999999999999987 222 26899999999999999999999999999
Q ss_pred EEEecCCCceeEEEecccc-ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEE
Q 008011 467 LWSIESDPKLVSRYKGHKR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l 545 (581)
|||+.+. ++++++..... ....+.+.+ . ...|++.+.+|.|.+++...+..+..+.+|...|+++..+|++ .+|
T Consensus 261 IWdVs~~-slv~t~~~~~~v~dqqvG~lW-q--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i 335 (603)
T KOG0318|consen 261 IWDVSTN-SLVSTWPMGSTVEDQQVGCLW-Q--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTI 335 (603)
T ss_pred EEEeecc-ceEEEeecCCchhceEEEEEE-e--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEE
Confidence 9999998 77777764433 223344444 3 5789999999999999999999999999999999999999999 799
Q ss_pred EEEECCCcEEEEcCCCcCcc
Q 008011 546 ASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+||+.||.|.-|+...+..-
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EeeccCceEEEEecCCcccc
Confidence 99999999999999887654
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=249.68 Aligned_cols=287 Identities=18% Similarity=0.300 Sum_probs=240.6
Q ss_pred ceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....+.+|++.|+|+.||.+|.+||||+.+|.|+||+..++. ....+...-..|.=+.|+|.+..|+.|+.||.+.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~---~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG---EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc---eEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 577889999999999999999999999999999999998774 33444455567888999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc-CccccEEEEEEeeCCCEEEEEEcC
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-QKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++||+.++....... .......++.++..+..++.|..+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9999988899999999999999999999999999999999999998876544433 333467888999999999999999
Q ss_pred CeEEEEECCCCeeeeE----------ecCCc---eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008011 423 AAILLLDREANFERWI----------EEEEV---ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~----------~~~~~---i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
+.+++.+..+++.... .+... |.++.++..-.+.++|+.||+|.|||+... .++..-.|... +
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~--V 330 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDG--V 330 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCc--e
Confidence 9999888877762221 22333 444455556678899999999999999874 34445556665 3
Q ss_pred EEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+++.| -+ ..+|++++.+|.|+.||.++|+++..+.+|...|.+++.+|+. ++++|+|.|++.+||++.
T Consensus 331 ~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence 44444 33 6799999999999999999999999999999999999999999 799999999999999874
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-34 Score=256.90 Aligned_cols=252 Identities=19% Similarity=0.362 Sum_probs=227.7
Q ss_pred cccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC
Q 008011 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
....+....++||++.|..++|+..|++||+++.|-.+++||.++ .+.+++.+.+|...|.++.|-|.|.++++++.|
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 345566888999999999999999999999999999999999974 356778889999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeC------
Q 008011 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD------ 412 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------ 412 (581)
.+|+.|++.+|-++.++.+|...|..+..+.||..+++++.|.+|++|-+.+++.......|..+|.+++|.|.
T Consensus 215 ~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i 294 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI 294 (406)
T ss_pred cceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch
Confidence 99999999999999999999999999999999999999999999999999999888888888889999999763
Q ss_pred ---------CCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe
Q 008011 413 ---------GKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 413 ---------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
+.++.+++.|++|++||+.++. ..+..|...|..++|+|.|+||+++..|+++++||+++. ++.+.+.
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 3589999999999999999998 667799999999999999999999999999999999998 7788888
Q ss_pred ccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 482 GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 482 ~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.|..-+.. ..++.+-.++++|+-|..+++|..
T Consensus 374 ah~hfvt~---lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTS---LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeEE---EecCCCCceEEeccccceeeeeec
Confidence 88775443 334666679999999999999974
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=259.97 Aligned_cols=273 Identities=22% Similarity=0.390 Sum_probs=234.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
..+.|+|+.+ |...+++|..|++|+|||..+- .+...+.||++.|.|+.|. .+.+++|+.|.+|+|||+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 4578999998 5568999999999999998654 6778899999999999985 5699999999999999999999
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe---eEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
++.++-.|...|..+.|+ +.++++++.|.++.+||+.... +.....+|...|+.+.|+. +++++++.|.+|++
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 999999999999999997 5699999999999999997543 2334456777899988864 59999999999999
Q ss_pred EECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE
Q 008011 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
|+..+.. ....+|...|.|+.+ .++++++|+.|.+|++||+..+ .+++.+.||..-+..++ .+.+.|++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciR-----Fd~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR-----FDNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhee-----ecCceeeec
Confidence 9999988 455678888888887 6899999999999999999998 89999999998755443 367899999
Q ss_pred eCCCcEEEEeCCCCc---------eEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 506 SEDSQVYIWHRYTGE---------LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 506 s~dg~I~iwd~~~~~---------~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+.||+|+|||+..+. ++.++..|++.|..+.|.. ..+++++.|.+|.|||+.++..-
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCcc
Confidence 999999999987653 3456667999999999965 57999999999999999876543
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-32 Score=237.17 Aligned_cols=285 Identities=18% Similarity=0.309 Sum_probs=236.2
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+.||..+++.+.++.+|.+|++|+.|.++.||-..++ ..+.++.+|.+.|+|+...-+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 57899999999999999999999999999999988777 556889999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-----CCcEEEEeCC-------CCeeEeeccCccccEEEEEEeeCCC
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----DKSICLWDLD-------GRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~~ 414 (581)
++|+++..++.. .+|..+.|+++|++++.... .+.|.++|++ +.+.......+...++.+-|.|-++
T Consensus 82 ~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 82 ETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999988654 58999999999998887654 4679999996 3333333344456899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 415 RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
.|++|..+|.|..||.+++. .....|...|+.+.++||..++++++.|.+-++||..+. ..++++..... +.
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~P----vN 235 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERP----VN 235 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccc----cc
Confidence 99999999999999999976 333567889999999999999999999999999999997 77777765443 34
Q ss_pred eeeCCCCCcEEEEEeCCCc--E------------EEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 492 SCFGGFEQAFIASGSEDSQ--V------------YIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~--I------------~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+...+|...+++.|+.... | ++|++-..+.+..+++|-++|++|+|||+| ...+||+.||.|++.
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLH 314 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEEE
Confidence 4445776666666654322 2 222222235567788999999999999999 799999999999998
Q ss_pred cCCC
Q 008011 558 GLDQ 561 (581)
Q Consensus 558 ~~~~ 561 (581)
-++.
T Consensus 315 ~Fd~ 318 (327)
T KOG0643|consen 315 HFDS 318 (327)
T ss_pred Eecc
Confidence 7654
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=264.22 Aligned_cols=304 Identities=19% Similarity=0.266 Sum_probs=264.4
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
+.+..|++.|.++.|+|...+++++-.+|.|.|||.++. ...+.+.-..-||++..|-+.-+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 345569999999999999999999999999999999876 56677888889999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeeEeeccCccccEEEEEEee-CCCEEEEEEcCC
Q 008011 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREA 423 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg 423 (581)
..+++.++.|..|...|.+++.+|...++++++.|-+|++||.+. -.+.....+|...|.+++|+| |.+.+++++-|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 999999999999999999999999999999999999999999975 455667778888999999999 567999999999
Q ss_pred eEEEEECCCCe--eeeEecCCceEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCC
Q 008011 424 AILLLDREANF--ERWIEEEEVITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
+|++|.+.+.. ..+..|...|+|+++-+ |..+|++|+.|..|++||.++. .+++++.||... +...+++|.-
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N---vs~v~fhp~l 239 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN---VSFVFFHPEL 239 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc---ceEEEecCCC
Confidence 99999999877 66778999999999988 4469999999999999999998 899999999998 5556668999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccCCCc-eEEecC
Q 008011 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNG-IVHHCN 578 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~-~~~~~~ 578 (581)
.+|++|++||+++||+..+-+...++.-.-..|+|++-.+.+ ..++.|.+.|.|.+ .+...+.......+| ++|+--
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~ 317 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVH 317 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcC
Confidence 999999999999999999988888888778899999999887 57888877776654 454444444433333 555543
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=235.62 Aligned_cols=286 Identities=22% Similarity=0.375 Sum_probs=246.2
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vw 344 (581)
..+.+|...|.+++|+.+|..||+|+.|+++.+|+++.. .+.......+|.+.|-.++|+| +...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999865 3444456789999999999998 56789999999999999
Q ss_pred ECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008011 345 DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 345 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
|++.++++.........+ -+.|+|+|.++++++.|..|.+.|.++.+......... .+..++|+.++..++.....|+
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-EVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-eeeeeeecCCCCEEEEecCCce
Confidence 999999999887766554 57899999999999999999999998877766555543 7889999988888888888899
Q ss_pred EEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEE
Q 008011 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|.|......+ .....|.....|+.|+|+|++|++|+.|..+.+||++.. .+++.+.-+.-+ ++...++.+|++|
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldwp---VRTlSFS~dg~~l 246 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDWP---VRTLSFSHDGRML 246 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccCc---eEEEEeccCccee
Confidence 9999887665 566788889999999999999999999999999999876 666777666555 5566668999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECC---------CcEEEEcCC
Q 008011 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD---------RTIRIWGLD 560 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~D---------g~I~iW~~~ 560 (581)
|+||+|..|-|=++++|..+..++ +.++.+.|+|+|.. .+||-+++| |+|++|.+.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence 999999999999999999999887 78999999999998 588877765 677877664
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-32 Score=264.80 Aligned_cols=321 Identities=21% Similarity=0.343 Sum_probs=269.4
Q ss_pred CCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEE
Q 008011 243 SDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT 322 (581)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~ 322 (581)
.|+.+.+|+... .....++.||+.+|+++.|...|..||+||.|+.|.+||+-.. .-...+.+|...|+.
T Consensus 85 aDGsVqif~~~s-------~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E---~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 85 ADGSVQIFSLES-------EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE---EGLFRLRGHKDSITQ 154 (888)
T ss_pred cCceEEeeccCC-------CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc---eeeEEeecchHHHhH
Confidence 445556665432 2457789999999999999999999999999999999999754 345678999999999
Q ss_pred EEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC------------
Q 008011 323 VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG------------ 390 (581)
Q Consensus 323 l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~------------ 390 (581)
+-|..+.+++++++.|+.|++||+++..|..+.-.|...++.+++.+ +.+++++.|+.+++|++..
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccce
Confidence 99999889999999999999999999999999999999999999986 7889999999999999810
Q ss_pred ----C---------eeE----------eecc-------------------------------------------------
Q 008011 391 ----R---------ELE----------SWKG------------------------------------------------- 398 (581)
Q Consensus 391 ----~---------~~~----------~~~~------------------------------------------------- 398 (581)
+ .+. ....
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 0 000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 008011 399 -------------------------------------------------------------------------------- 398 (581)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (581)
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence
Q ss_pred -----------------------------------------------------------CccccEEEEEEeeCCCEEEEE
Q 008011 399 -----------------------------------------------------------QKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 399 -----------------------------------------------------------~~~~~v~~i~~~~~~~~l~~~ 419 (581)
.|.+.|.+++.+||+..+++|
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 566788999999999999999
Q ss_pred EcCCeEEEEECCCCe--------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008011 420 CREAAILLLDREANF--------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~--------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
+.|.+|++||..-.. .+.......|.|+.+||||++|+++--|+++++|-+++. +..-.+.||.-
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkL 551 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKL 551 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeeccccc
Confidence 999999999864221 244566788999999999999999999999999999987 77788889998
Q ss_pred ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
++.. +-.+|++++++|||.|..|+||-+.-|.|-..+-+|...|.++.|.|.. +++.|||.|+.|+-||-...+..
T Consensus 552 PV~s---mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 552 PVLS---MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ceeE---EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh
Confidence 8554 4448999999999999999999999999999999999999999999988 89999999999999999887766
Q ss_pred cccC-----CCceEEecCCC
Q 008011 566 HRDQ-----SNGIVHHCNGR 580 (581)
Q Consensus 566 ~~~~-----~~~~~~~~~G~ 580 (581)
+... ....+..|+|+
T Consensus 628 q~L~~H~~ev~cLav~~~G~ 647 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGS 647 (888)
T ss_pred eeeccchheeeeeEEcCCCC
Confidence 5432 45555666664
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=276.35 Aligned_cols=248 Identities=27% Similarity=0.472 Sum_probs=215.1
Q ss_pred eeeec-cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC----------------------------C--e-------
Q 008011 265 LQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED----------------------------G--Q------- 306 (581)
Q Consensus 265 ~~~l~-~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----------------------------~--~------- 306 (581)
.+.+. +|.+.||++.||+||+|||+||.||.|+||.+... . .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45566 89999999999999999999999999999998640 0 0
Q ss_pred --------------------eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEE
Q 008011 307 --------------------VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (581)
Q Consensus 307 --------------------~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 366 (581)
-++...+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+|++.| .|...|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence 0233457899999999999965 59999999999999999999999998 6788999999
Q ss_pred Eec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeE-------
Q 008011 367 WFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI------- 438 (581)
Q Consensus 367 ~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------- 438 (581)
|+| |.++|++|+-||.|++|++...++..|...+. -|++++|.|||+..++|+.+|.+++|+....+....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 88999999999999999999999999988875 899999999999999999999999999988762111
Q ss_pred ---ecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEE
Q 008011 439 ---EEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 439 ---~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
.....|+.+.|.| +...+++.+.|..|+|||.++. .++..|+|.......+...| +.+|++|+++++|..||||
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEE
Confidence 1123799999998 4446888999999999999877 88999998888777777777 6699999999999999999
Q ss_pred eCC
Q 008011 515 HRY 517 (581)
Q Consensus 515 d~~ 517 (581)
+..
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 974
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=249.50 Aligned_cols=254 Identities=19% Similarity=0.271 Sum_probs=233.8
Q ss_pred eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008011 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 386 (581)
++..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|+...++.+|-..|..+++++-..++++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 46667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCc
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
|+..+++......|-..|.|++.+|.-..|+++++|.++++||+++.. ..+.+|..+|.++.+.|-...+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999888888888899999999999999999999999999999987 566679999999999998889999999999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcE
Q 008011 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHM 544 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~ 544 (581)
|++||++.+ +....+..|... +++...+|....+|+++.|. |+-|++..|..+..+.+|...|++++.+.|+ +
T Consensus 301 vrlWDl~ag-kt~~tlt~hkks---vral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v 373 (460)
T KOG0285|consen 301 VRLWDLRAG-KTMITLTHHKKS---VRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--V 373 (460)
T ss_pred EEEeeeccC-ceeEeeecccce---eeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc--e
Confidence 999999998 667777777765 55666689999999998875 9999999999999999999999999999998 8
Q ss_pred EEEEECCCcEEEEcCCCcCcccc
Q 008011 545 LASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
+++|++.|.+.+||.+++...+.
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred EEEcCCceEEEEEecCcCccccc
Confidence 99999999999999998765544
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-30 Score=232.16 Aligned_cols=291 Identities=21% Similarity=0.318 Sum_probs=244.7
Q ss_pred ceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC--CCcE
Q 008011 264 TLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ--EEAI 341 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~--dg~i 341 (581)
+.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++ ...+++..+.-.|..++|......++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 44556667789999999999999999999999999999987 455667777778999999877777777766 8899
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++........... .-..++|.|.|-.+|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999966555444433 3456799999999999998
Q ss_pred CCeEEEEECCCCe----eeeE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccce-eEEEee
Q 008011 422 EAAILLLDREANF----ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-FVIRSC 493 (581)
Q Consensus 422 dg~i~i~d~~~~~----~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~~ 493 (581)
...|++||++... ..+. ......+.+.|||||++++.++..+.+++.|.-++ .....+.++.... ..+.++
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEE
Confidence 8899999998753 2222 33567899999999999999999999999999888 6888888777654 334444
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCc
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
| .|+++++++|+.||+|.+|++++|+.+..+.+ +.+++.++.|+|.- -+++|+ +..+.+|-......
T Consensus 240 f-tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 240 F-TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred E-CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeec--CceEEEEecccccc
Confidence 4 99999999999999999999999999999998 78999999999966 355554 56899998765544
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=257.17 Aligned_cols=243 Identities=17% Similarity=0.312 Sum_probs=221.1
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 396 (581)
..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....+..|+.+|.++.|++++.++++|+.+|.|++|+.....+...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 45699999999999999999999999999755444445678999999999999999999999999999999998888888
Q ss_pred ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008011 397 KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 397 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
..++...|++++|+|+...+++++.||+|+|||....+ ..+..|.-.|.+++|+|....+++++.|+.|++||.+++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg- 254 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG- 254 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-
Confidence 88887899999999999999999999999999998876 566788999999999999999999999999999999998
Q ss_pred ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcE
Q 008011 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
.++.++.+|+..+..+ -+.+++++|+++|.|..++++|+++.+.+.++++|...|+++.|+|-.+.+|.+|+.||.|
T Consensus 255 ~cl~tlh~HKntVl~~---~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAV---KFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred chhhhhhhccceEEEE---EEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 8888899998874443 3488999999999999999999999999999999999999999999888899999999999
Q ss_pred EEEcCCCcC
Q 008011 555 RIWGLDQIN 563 (581)
Q Consensus 555 ~iW~~~~~~ 563 (581)
..|.+...+
T Consensus 332 vh~~v~~~~ 340 (464)
T KOG0284|consen 332 VHWVVGLEE 340 (464)
T ss_pred EEEeccccc
Confidence 999998433
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2e-31 Score=243.18 Aligned_cols=287 Identities=22% Similarity=0.343 Sum_probs=239.9
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC---eEEEeeC
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH---QLLTCGQ 337 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---~l~s~~~ 337 (581)
|.++.+.+ .|.+.|.++... ++.+++|+.||.++|||... +....+.+|.++|.+++|..... .|++++.
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 33444433 399999999987 77999999999999999873 46678899999999988865333 5999999
Q ss_pred CCcEEEEECCCCcE----EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----------------------
Q 008011 338 EEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----------------------- 390 (581)
Q Consensus 338 dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~----------------------- 390 (581)
|.++++|.++.++. ++...+|...|-++...+++..+++|+.|..|.+|+...
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 99999999987753 344459999999999999999999999999999999321
Q ss_pred --CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008011 391 --RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 391 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
+........|..+|.++.|++ ...+++++.|.+|+.||+.++. ......+..++++.++|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceee
Confidence 122334457778999999998 6789999999999999999988 566677888999999999999999999999999
Q ss_pred EEecCCC--ceeEEEeccccceeEEEeeeCCC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCcCCEEEEEEcCCCCc
Q 008011 468 WSIESDP--KLVSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 468 wd~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v~~l~~~p~~~~ 543 (581)
||.+++. .....+.+|.+.+..+ -++| +...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+..+
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVssv---kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-- 401 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSSV---KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-- 401 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhhe---ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc--
Confidence 9998753 3556788998864443 3344 45678999999999999999887 999999999999999998754
Q ss_pred EEEEEECCCcEEEEcCC
Q 008011 544 MLASASDDRTIRIWGLD 560 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~ 560 (581)
.|+|||.|.+|+|+.-.
T Consensus 402 ~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 402 LIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEeccCcceEEEeccc
Confidence 89999999999998754
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=263.12 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=252.1
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
..+.||...|.++++|.+...+++|+ .+.++||+..+. ++++++... .+.+..|.|.++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~---kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL---KCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc---ceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence 35679999999999999988888875 567999999876 566666543 799999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----Cee---Eeec----cCccccEEEEEEeeCC
Q 008011 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----REL---ESWK----GQKTLRISDMAITDDG 413 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~---~~~~----~~~~~~v~~i~~~~~~ 413 (581)
+.+...+.++..|.+.+++++.+||+..+++|+.|.+|++||..- +.. .... -.-...|.|+.++|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999731 111 1111 1123479999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 414 KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++|+++--|+++++|-+++.+ ....+|.-+|.|+.+|||++.+++|+.|.+|++|-++-+ .+-+.+.+|...+..+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEE
Confidence 999999999999999999987 778899999999999999999999999999999999988 78888999988744443
Q ss_pred eeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcC
Q 008011 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+-|...++++++.|+.|+-||-...+.+..+.+|...|+|++.+|+| .+++|+|.|.+|++|......
T Consensus 600 ---F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 600 ---FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ---EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccCcc
Confidence 36688899999999999999999999999999999999999999999 699999999999999987633
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=267.26 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=256.2
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.++..+..|..++|+|...+++++-..|.|.+||..-+ .++..+..|.++|..++|+|++.++++||.|-.|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45567788999999999999999999999999999866 677889999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.+.+|+.++.+|-..|..+.|++.-.++++++.|.+|+||+..++.......+|...|.|..|+|....+++++-|.+|+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCe-------------------------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-C
Q 008011 427 LLDREANF-------------------------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-P 474 (581)
Q Consensus 427 i~d~~~~~-------------------------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~ 474 (581)
+||+..-. ....+|...|+-++|+|.-..+++|+.|..|++|.+... .
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99986421 112357788999999999999999999999999998653 2
Q ss_pred ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcE
Q 008011 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
-.+.+..+|.++ +.++.++|..++|++.|+|++|+|||+...+.+.+++...+..+.++-+|.. ++++ ++.|+-+
T Consensus 241 WEvDtcrgH~nn---Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLfA-AgHDsGm 315 (1202)
T KOG0292|consen 241 WEVDTCRGHYNN---VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLFA-AGHDSGM 315 (1202)
T ss_pred eeehhhhcccCC---cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ceee-eecCCce
Confidence 345567788887 4455559999999999999999999999999999998888899999999998 4554 5566777
Q ss_pred EEEcCCCcCc
Q 008011 555 RIWGLDQINM 564 (581)
Q Consensus 555 ~iW~~~~~~~ 564 (581)
.+|.++....
T Consensus 316 ~VFkleRErp 325 (1202)
T KOG0292|consen 316 IVFKLERERP 325 (1202)
T ss_pred EEEEEcccCc
Confidence 7888764433
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=252.76 Aligned_cols=299 Identities=20% Similarity=0.293 Sum_probs=241.0
Q ss_pred cccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe-eeEEEee-cCCCCCeEEEEeCCCCCeEEE
Q 008011 257 RNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRL-SGHRKPVFTVSWSPNDHQLLT 334 (581)
Q Consensus 257 ~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~-~~h~~~V~~l~~sp~~~~l~s 334 (581)
...+|..+-..+++|+..|.++++.|.|..|++||.|.+|++||+..... ....+.+ ......|+++.|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 34578888889999999999999999999999999999999999974221 1111222 234557999999999999999
Q ss_pred eeCCCcEEEEECCCCcEEE------------EEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe----eEeec
Q 008011 335 CGQEEAIRRWDVNSGECLH------------VYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE----LESWK 397 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~----~~~~~ 397 (581)
.+.....+|+|-...+... ..++|...++|.+|+|+. ..+++++.||++++||+...+ +....
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 9988999999955433222 224788899999999954 568999999999999996422 22211
Q ss_pred --cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCC--ceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 398 --GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 398 --~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.....+++.++|+++|++|++|+.||.|.+|+..... .....|.. .|+|+.||+||++|++-+.|+++++|
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 2333478999999999999999999999999986654 23335555 89999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC------CCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCC
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~ 542 (581)
|++...+++....+-........+|| +|+.++|++|+. .|.+++||..+.+.++.+.-....|..+.|||.-
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL- 469 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL- 469 (641)
T ss_pred eccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh-
Confidence 99998888888777666544455666 999999999875 5689999999999999988888899999999988
Q ss_pred cEEEEEECCCcEEEE
Q 008011 543 HMLASASDDRTIRIW 557 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW 557 (581)
+.|+.++.||++++|
T Consensus 470 NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVY 484 (641)
T ss_pred hheeeecCCCceEEE
Confidence 678888889999986
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=263.21 Aligned_cols=291 Identities=18% Similarity=0.245 Sum_probs=250.2
Q ss_pred ccceeeeccccCcEEEEEEc-CCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 262 SQTLQILEAHSDEVWFLQFS-HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s-~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
.+....+-|-.+.|..++|- |+.++||.++..+.+++++..+.. ...+.+|+..|.++....+|.+|+||+.|.+
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----c~ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY----CQIIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc----eEEEeCchhheeeeeecccCcEEEEecCCce
Confidence 34566677899999999974 677899999999999999887542 2378999999999996667889999999999
Q ss_pred EEEEECCCCc----EEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe----eE-----eeccCccccEEE
Q 008011 341 IRRWDVNSGE----CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE----LE-----SWKGQKTLRISD 406 (581)
Q Consensus 341 i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~----~~-----~~~~~~~~~v~~ 406 (581)
+++|.++.+. ++....+|...|.+++++..+ ..|++++.|+++++|++...+ .. .....|...|++
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 9999885443 455667899999999997644 568899999999999996511 11 122356678999
Q ss_pred EEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc
Q 008011 407 MAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 407 i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
++++|+.+.+++|+.|.+.++|++.+.. ..+.+|...+.++.|+|..+.+++++.|++|+||.+.+. .+.+++.||.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~ 547 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHT 547 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCcc
Confidence 9999999999999999999999999766 567789999999999999999999999999999999998 8999999999
Q ss_pred cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 485 RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+ .++.| -.+|..|++++.||-|++|++++++++.++.+|+..|++++.+|.. .+++||+.||.|.+|.=.+
T Consensus 548 ~aV--lra~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 548 SAV--LRASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cee--Eeeee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc-ceeEecCCCeEEEEeecCc
Confidence 874 44555 4588999999999999999999999999999999999999999999 6999999999999996443
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=258.55 Aligned_cols=254 Identities=18% Similarity=0.345 Sum_probs=235.1
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 390 (581)
+++..++..|.++.|+|....++++-.+|.|.|||.++...++.+.....+|.++.|-+-.+++++|+.|..|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45666899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECC-CCCEEEEEeeCCcEE
Q 008011 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIH 466 (581)
Q Consensus 391 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~ 466 (581)
.+.......|...|++++.+|...++++++.|-+|++||.+..- ..+.+|...|.+++|.| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 99888888888899999999999999999999999999999876 67778999999999999 778999999999999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEE
Q 008011 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
+|.+... .+..++.+|...+..+.... ..+..++++|+.|..|+|||..+..|+.++.||...|..+.|+|.-| +++
T Consensus 167 VWslgs~-~~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iii 243 (794)
T KOG0276|consen 167 VWSLGSP-HPNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-III 243 (794)
T ss_pred EEEcCCC-CCceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEE
Confidence 9999887 88899999999877765443 55678999999999999999999999999999999999999999995 999
Q ss_pred EEECCCcEEEEcCCCcCcccc
Q 008011 547 SASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
|||.||+||||.-.+.++...
T Consensus 244 sgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred EecCCccEEEecCcceehhhh
Confidence 999999999999988776643
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=1.5e-29 Score=234.67 Aligned_cols=281 Identities=16% Similarity=0.247 Sum_probs=244.0
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
...|+++...|....++||+.|.++.++|...+ .....+.||...|+.+.|+|+...+++++.|..|+||......+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 356788888888778999999999999999876 56688999999999999999999999999999999999988888
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC--ccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ--KTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
......|..+|+.+..+|.|.+|++++.||+..+.|++++........ ....+++.+|+|||..+.+|..|+.|++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 888889999999999999999999999999999999988766554433 334689999999999999999999999999
Q ss_pred CCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC
Q 008011 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
+..+. ..+..|.++|..++|+.+|-||++++.|+.|++||++.. +..+++...... .+....+...|.+++.++.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeeccccc--cceeEEEcCCCCeEEeecc
Confidence 99877 677889999999999999999999999999999999987 555565544332 2333444889999999988
Q ss_pred CCcEEEEeC--CCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 508 DSQVYIWHR--YTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 508 dg~I~iwd~--~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
|=+|++++- .++.++..+..|.+..+++.|.... ++++++|.|..++++.+
T Consensus 453 ~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 878888773 3567888888999999999999988 79999999999998865
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2e-30 Score=221.93 Aligned_cols=252 Identities=17% Similarity=0.287 Sum_probs=222.1
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
..+.+..|.++|..+.|+-+|+|.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCc
Q 008011 389 DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
.++++......|...|+.+.|+.+...+++|+-|.++++||.++.. +.+......|.++... +..+++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 9999998888898999999999999999999999999999999876 3333456778888875 567999999999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEE--EEcCCCC
Q 008011 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCV--SWNPANL 542 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l--~~~p~~~ 542 (581)
++.||++.+ ....-+.+|+ +.+..++++++...+++.|+++++.|-.+|+++..+++|...-..+ +++...
T Consensus 167 vRtydiR~G-~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd- 239 (307)
T KOG0316|consen 167 VRTYDIRKG-TLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD- 239 (307)
T ss_pred EEEEEeecc-eeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-
Confidence 999999998 6666666664 4455569999999999999999999999999999999997755443 456655
Q ss_pred cEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 543 HMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+++|++||.|++||+-+..+.....
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeec
Confidence 689999999999999999887765544
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=258.84 Aligned_cols=255 Identities=20% Similarity=0.349 Sum_probs=224.3
Q ss_pred eecC-CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 312 RLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 312 ~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
.+.. |...|.++.|+++|+.+++++.++.+++|+..+++ ..+.+.+|...|.+++|+|++.++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 3434 37789999999999999999999999999998777 77777899999999999999999999999999999999
Q ss_pred -CCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcE
Q 008011 389 -DGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 389 -~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
..+........|...|++++|+|+++.+++|+.|++|++||++++. ..+..|...|++++|++++++|++++.|+.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 5546666666788899999999999999999999999999999977 6677899999999999999999999999999
Q ss_pred EEEEecCCCc-eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCC---EEEEEEcCCC
Q 008011 466 HLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS---VNCVSWNPAN 541 (581)
Q Consensus 466 ~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~---v~~l~~~p~~ 541 (581)
++||+.++.. +...+.++.... .+..+.++|++.++++++.|+.+++||+..+.....+.+|... +.+...++.+
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999833 466777777765 6777777999999999999999999999999999999999774 4444557777
Q ss_pred CcEEEEEECCCcEEEEcCCCcCccccc
Q 008011 542 LHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
.++++++.|+.|++|++.++......
T Consensus 392 -~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 392 -KLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred -CeEEEEeCCceEEEEeCCccchhhhh
Confidence 79999999999999999987765443
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.6e-29 Score=242.68 Aligned_cols=265 Identities=27% Similarity=0.424 Sum_probs=225.2
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 390 (581)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|.++++.+++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999988888889988999999999999999999999999999987
Q ss_pred CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 391 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.........+...+.++.|+++++.+++++.++.|.+||+.+.. .....+...+.++.|+|++.++++++.++.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 65544445555689999999998888888889999999998665 3344577889999999999999888889999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEE
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
|+++. +....+..+... +..+.++++++.+++++.|+.|++||+.+++.+..+..|...|.+++|+|++ .+++++
T Consensus 163 d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 237 (289)
T cd00200 163 DLRTG-KCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASG 237 (289)
T ss_pred Ecccc-ccceeEecCccc---cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC-cEEEEE
Confidence 99876 667777766654 3344458899899999999999999999999999998899999999999997 788888
Q ss_pred ECCCcEEEEcCCCcCcccc-----cCCCceEEecCCC
Q 008011 549 SDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 549 s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
+.||.|++|++.+++.... .....+.++++|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC
Confidence 8899999999987665433 2245566777654
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.5e-31 Score=240.88 Aligned_cols=233 Identities=20% Similarity=0.430 Sum_probs=209.1
Q ss_pred CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe
Q 008011 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 395 (581)
....|.|+.+ |+..+++|..|++|+|||..+-.+.+.+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++...
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 4567999998 46789999999999999999999999999999999999984 6699999999999999999999998
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 396 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
...+|...|..+.|+. .++++++.|.++.+||+.... ....+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 8888988999999874 589999999999999998876 3456888999999995 569999999999999999
Q ss_pred cCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEEC
Q 008011 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
.+. ..++++.+|... |.+. -..++++++|+.|.+|++||+..|.++..+.||+.-|.++.|+. ..+++|+.
T Consensus 348 st~-efvRtl~gHkRG---IACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---krIVSGaY 418 (499)
T KOG0281|consen 348 STC-EFVRTLNGHKRG---IACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGAY 418 (499)
T ss_pred cce-eeehhhhccccc---ceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---ceeeeccc
Confidence 998 899999999987 3333 45789999999999999999999999999999999999999975 57999999
Q ss_pred CCcEEEEcCCCcCcc
Q 008011 551 DRTIRIWGLDQINMK 565 (581)
Q Consensus 551 Dg~I~iW~~~~~~~~ 565 (581)
||+|+|||+..+.-.
T Consensus 419 DGkikvWdl~aaldp 433 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDP 433 (499)
T ss_pred cceEEEEecccccCC
Confidence 999999999876544
No 58
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=224.57 Aligned_cols=267 Identities=19% Similarity=0.293 Sum_probs=227.3
Q ss_pred eEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECC-CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008011 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 386 (581)
.+...+.+|.+.|+.+.|+|+|..||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3445678999999999999999999999999999999964 345567788999999999999999999999999999999
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeCCC-EEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCc
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
|+++++.......|..-++.+.-+.-|. .+.+++.|+++++||.++.. .+.......++++.|..++..+.+|+-|+.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 9999998888888887888888655555 45677889999999999877 667777888999999999999999999999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCc----CCEEEEE
Q 008011 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHS----GSVNCVS 536 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~----~~v~~l~ 536 (581)
|++||++.+ .....+.||...+. ..+.+++|.++.+-+.|.++++||++.. .++..+.+|. ......+
T Consensus 198 ikvWd~r~~-d~~~~lsGh~DtIt---~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 198 IKVWDLRKN-DGLYTLSGHADTIT---GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred eeeeccccC-cceEEeecccCcee---eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999988 88899999999844 4555899999999999999999997643 4577777763 3445778
Q ss_pred EcCCCCcEEEEEECCCcEEEEcCCCcCccccc-----CCCceEEecCC
Q 008011 537 WNPANLHMLASASDDRTIRIWGLDQINMKHRD-----QSNGIVHHCNG 579 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~-----~~~~~~~~~~G 579 (581)
|+|++ ..+..++.|..+++||.....+.... ..+.+.|+|..
T Consensus 274 wsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 274 WSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred ccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 99999 79999999999999999887666443 36667777653
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=219.72 Aligned_cols=280 Identities=19% Similarity=0.260 Sum_probs=228.2
Q ss_pred EEEEEcC-CCCEEEEE-------ECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEEEEC
Q 008011 276 WFLQFSH-DGKYLASS-------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 276 ~~l~~s~-~g~~lasg-------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~ 346 (581)
.++.||| -.++||.+ ...|++.|-++...+.+.....+. -.+.+..++|+++ .+.+++++.||++++||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788998 22233333 246889999997555555555444 4567999999995 467889999999999996
Q ss_pred CC-CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeC-CCEEEEEEcCC
Q 008011 347 NS-GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREA 423 (581)
Q Consensus 347 ~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg 423 (581)
.. ..+++.++.|...|.++.|++ ++..+++++.|++|++|+............|...|...+|+|. ++.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 457888999999999999998 5667888999999999999776666666677789999999994 67899999999
Q ss_pred eEEEEECCCCe--eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCC-C
Q 008011 424 AILLLDREANF--ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-Q 499 (581)
Q Consensus 424 ~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 499 (581)
.+++||++..- ..+..|...+.++.|+. +...+++|+.|+.|+.||+++-..++..+.+|.-. ++-+.++|. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---VRkvk~Sph~~ 247 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---VRKVKFSPHHA 247 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE---EEEEecCcchh
Confidence 99999998754 55667888999999998 67788999999999999999988888888888765 444444554 5
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 500 AFIASGSEDSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.+|++++.|-+++|||...+ ..+.+...|+.-|.++.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 68999999999999998744 4566777889999999999988889999999999999984
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=217.05 Aligned_cols=268 Identities=20% Similarity=0.340 Sum_probs=216.7
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeee-ccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQIL-EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
+...+.+..+.+|+... .+. ..+..++ .+|+..|.+++|+|.|++||+||.|.++.||.-. ++.+++..++.||
T Consensus 30 lAscg~Dk~vriw~~~~--~~s--~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEGH 104 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSS--GDS--WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEGH 104 (312)
T ss_pred EEeecCCceEEEEecCC--CCc--EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeecc
Confidence 44556777788887553 111 2344444 4899999999999999999999999999999876 4678999999999
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC---cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-C--
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-G-- 390 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~-~-- 390 (581)
...|.|++|+++|++||+|+.|..|.||.+..+ ++...++.|...|..+.|+|....|++++.|++|++|+-. .
T Consensus 105 EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd 184 (312)
T KOG0645|consen 105 ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD 184 (312)
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCC
Confidence 999999999999999999999999999998754 5778899999999999999999999999999999999875 2
Q ss_pred CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 391 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
-.+......+...|.+++|++.|..|++++.|+++++|-..+.. ...|...+..+.|. ...|++++.|+.|++|.-
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--chhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 34556666676799999999999999999999999999865332 22456778889998 568999999999999987
Q ss_pred cCCC-ce-----eEEEeccccceeEEEeeeCCC-CCcEEEEEeCCCcEEEEeCC
Q 008011 471 ESDP-KL-----VSRYKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 471 ~~~~-~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd~~ 517 (581)
.... .+ .+.-..|... +.++.+.| ..+.|++|+.||.|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~d---VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVD---VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccc---cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6421 11 1122344443 55555577 47899999999999999864
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.3e-29 Score=253.77 Aligned_cols=281 Identities=19% Similarity=0.371 Sum_probs=246.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
.|...+.|..|. +.++++++.|++|++|+..++ ......+.+|.+.|+++++..-+.++++|+.|.+++|||..+|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 367788999998 558999999999999999765 2333449999999999999877889999999999999999999
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008011 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
+|.+.+.+|...+.++... ...+++|+.|.+|++|++.++........|..+|.++.++ +..+++|+.|++|.+||
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999999888754 5578889999999999999888888887788899999998 88999999999999999
Q ss_pred CCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC
Q 008011 430 REANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 430 ~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
..+.+ .....|...|.++.+.+. ..++.|+.|+.|++||+++..+++..+.+|...+..+ ...+++|++++.
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDNFLVSSSA 431 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----ccccceeEeccc
Confidence 99887 566789999999988765 8999999999999999998756888888888765332 346789999999
Q ss_pred CCcEEEEeCCCCceEEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 508 DSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
|++|++||..+++++..+.+ |.+.|..+++. . ..+++++.||++++||+.+++..+.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCchhhh
Confidence 99999999999999999999 77899999987 2 4789999999999999999988764
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.2e-29 Score=259.06 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=240.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEE--CCCeEEEEEcccCC---------eeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSS--KDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs--~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
.+...|.+++.+|||..+|||+ .||.++||+.+.-. ..+.......|.+.|+|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 99999999975211 123445677899999999999999999999999
Q ss_pred CcEEEEECCC------------------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc
Q 008011 339 EAIRRWDVNS------------------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 339 g~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 400 (581)
+.|.||.... -++...+.+|...|..++|+|++.+|++++.|++|.+||..+.+.......|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998762 1367788899999999999999999999999999999999998888888888
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE-------ecCCceEEEEECCCCCEEEEEee----CCcEEEE
Q 008011 401 TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-------EEEEVITSFSLSKDNKYLLVNLI----NQEIHLW 468 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iw 468 (581)
...|..+.|.|-|+++++-+.|++|++|++.+-. .+.+ .....+..+.|||||.+|++... -..+.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 8899999999999999999999999999976643 2222 22345789999999999998643 3468888
Q ss_pred EecCCCceeEEEeccccceeEEEeeeC---CCC-------C----cEEEEEeCCCcEEEEeCCCCceEEEecc-CcCCEE
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFG---GFE-------Q----AFIASGSEDSQVYIWHRYTGELVLALAG-HSGSVN 533 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-------~----~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~ 533 (581)
+-.+. +.-..+-||..+..++++... .+. . ..+|+|+.|++|-||.....+++..... ....|.
T Consensus 251 eR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 251 ERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred ecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 87665 667788899987655544210 111 1 2689999999999999887777655432 367899
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 534 CVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++|+||| ..|+.||.||+|.+..++..++-
T Consensus 330 DmsWspdG-~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 330 DMSWSPDG-FSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eeeEcCCC-CeEEEEecCCeEEEEEcchHHhC
Confidence 99999999 79999999999999999876543
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.6e-29 Score=248.12 Aligned_cols=306 Identities=15% Similarity=0.239 Sum_probs=242.9
Q ss_pred ccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCC
Q 008011 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (581)
.+-..+.+.+|+-..+ .++..+..|.++|..++|+|++.++++|+.|.+|+||+..+. ++..++.+|-+.
T Consensus 26 tslHsG~IQlWDYRM~-------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~GHlDY 95 (1202)
T KOG0292|consen 26 TSLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLLGHLDY 95 (1202)
T ss_pred EeecCceeeeehhhhh-------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhccccce
Confidence 3334456666653332 357788999999999999999999999999999999999865 788999999999
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC--------
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR-------- 391 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-------- 391 (581)
|..+.|++.-.+|++++.|.+|+||++.+++++..+.+|...|.|..|+|....+++++-|.+|++||+.+-
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998531
Q ss_pred ---------------------eeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeeEecCCceEE
Q 008011 392 ---------------------ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITS 446 (581)
Q Consensus 392 ---------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~ 446 (581)
.++....+|...|+-++|+|.-..+++|+.|..|++|.....+ ....+|.+.|.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 0123345677789999999999999999999999999988765 455689999999
Q ss_pred EEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-------
Q 008011 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG------- 519 (581)
Q Consensus 447 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~------- 519 (581)
+-|+|..+++++.+.|+.|++||+... ..+.++.-....-+.+. .+|..+++++|.+.| +.||.+...
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~la---ahP~lNLfAAgHDsG-m~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILA---AHPELNLFAAGHDSG-MIVFKLERERPAYAVN 330 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEE---ecCCcceeeeecCCc-eEEEEEcccCceEEEc
Confidence 999999999999999999999999887 77778766555544433 378888887776544 444443311
Q ss_pred --------------------c--eEEEeccC---cCCEEEEEEcCCCCcEEEEEECC-CcEEEEcCC
Q 008011 520 --------------------E--LVLALAGH---SGSVNCVSWNPANLHMLASASDD-RTIRIWGLD 560 (581)
Q Consensus 520 --------------------~--~~~~l~~h---~~~v~~l~~~p~~~~~l~s~s~D-g~I~iW~~~ 560 (581)
+ .+..++.. ..++.++.++|.....+++...| |..-++.+.
T Consensus 331 ~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 331 GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 1 11122221 25788899999875455554444 444455543
No 64
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.6e-29 Score=232.27 Aligned_cols=293 Identities=19% Similarity=0.272 Sum_probs=242.1
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEE--------------Eee-cCCCCCeEEEEeCCCC
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK--------------HRL-SGHRKPVFTVSWSPND 329 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~V~~l~~sp~~ 329 (581)
+..+..|.-+|+|++++|++++.++++.+++|.=|++.++.....+ ..- .+|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667789999999999999999999999999999998766432100 011 3788899999999999
Q ss_pred CeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEE
Q 008011 330 HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 330 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 409 (581)
++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++|++|+++..........|...|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998889999999999999999988777777777789999999
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccccc-
Q 008011 410 TDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRA- 486 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~- 486 (581)
..-++.+-+|+.|.++++|++.... ..+..+.+.+.|++|-. ...+++|+.+|.|.+|++... +++.... .|.-.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc-CceeEeeccccccC
Confidence 9888888888899999999996655 66677888999999974 567999999999999999887 4544433 22211
Q ss_pred -------eeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008011 487 -------RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 487 -------~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+.+..++..|...++++|+.+|.|++|-+..+ +++..+. -.+.|++++|+++|..+++..+....+-
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 124555566788899999999999999998877 4555555 5789999999999954666667766665
Q ss_pred EEcCC
Q 008011 556 IWGLD 560 (581)
Q Consensus 556 iW~~~ 560 (581)
-|-..
T Consensus 452 RW~~~ 456 (479)
T KOG0299|consen 452 RWWCL 456 (479)
T ss_pred eeeEe
Confidence 55543
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.2e-28 Score=268.05 Aligned_cols=264 Identities=12% Similarity=0.168 Sum_probs=214.5
Q ss_pred CCeEEEEEcccCCeeeE--EEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC----c----EEEEEecCCCeE
Q 008011 293 DQSAIIWEVKEDGQVSL--KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG----E----CLHVYEKTGVGL 362 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v 362 (581)
+|.+++|+......... ...+..|.+.|.+++|+|++++||+|+.|+.|+|||+.+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888764221111 1224568999999999999999999999999999997542 1 122232 34578
Q ss_pred EEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCe-eeeEe
Q 008011 363 ISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANF-ERWIE 439 (581)
Q Consensus 363 ~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 439 (581)
.+++|++ ++..|++++.||+|++||+.++........|...|.+++|+| ++..|++++.|+.|++||++++. .....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 8999987 478899999999999999998877776777778999999996 78999999999999999998876 33444
Q ss_pred cCCceEEEEEC-CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC
Q 008011 440 EEEVITSFSLS-KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 440 ~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
....+.++.|+ +++.+|++|+.|+.|++||+++.......+.+|...+..+.+ . ++.++++++.|++|++||+..
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f---~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF---V-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE---e-CCCEEEEEECCCEEEEEeCCC
Confidence 55689999995 579999999999999999998864566777888877554433 3 678999999999999999874
Q ss_pred ------CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 519 ------GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 519 ------~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
++++..+.+|...+++++|+|++ .+|++|+.|+.|++|+....
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 36788899999999999999999 69999999999999997654
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=244.26 Aligned_cols=265 Identities=17% Similarity=0.290 Sum_probs=223.4
Q ss_pred eEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008011 308 SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 385 (581)
+.++.+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 889999999999999999976 8999999999999999999999999999999999999
Q ss_pred EeCCCCeeEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeC
Q 008011 386 WDLDGRELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
||++++++........ .+.|+.|.|++ +.+++|+.|+.|+.||++++. .....|-+.|..+.|-++|+++++++.|
T Consensus 285 wDtETG~~~~~f~~~~-~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDK-VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEecCC-CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999988776555443 79999999998 889999999999999999998 5566788999999999999999999999
Q ss_pred CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC---ceEEEeccCc--CCEEEEEE
Q 008011 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---ELVLALAGHS--GSVNCVSW 537 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~--~~v~~l~~ 537 (581)
+.++||+.+.. .+++....+. ...+.++..+|++.++++-+.|+.|.+|.+... .....+.+|. +.-..+.|
T Consensus 364 ks~riWe~~~~-v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 364 KSVRIWENRIP-VPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccEEEEEcCCC-ccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 99999999876 3333322221 123456666999999999999999999986543 2335677884 55667899
Q ss_pred cCCCCcEEEEEECCCcEEEEcCCCcCcccccC-----CCceEEec
Q 008011 538 NPANLHMLASASDDRTIRIWGLDQINMKHRDQ-----SNGIVHHC 577 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~-----~~~~~~~~ 577 (581)
|||| .+|++|+.||.+.+||.++.++....+ ..++.|+|
T Consensus 441 SpDG-~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 441 SPDG-RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred cCCC-CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 9999 799999999999999999888765433 44555555
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.1e-28 Score=216.13 Aligned_cols=278 Identities=19% Similarity=0.307 Sum_probs=225.5
Q ss_pred eccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 268 l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
-..-.+.|.+++||| ...+++.||.||+|++|+++..+.+.. +....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 345678999999999 555777999999999999987544433 567789999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCC--eEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
.+++ ...+..|..+|.++.|.+... .|++|+.|++|++||++............ ++.++..- ...++++..+..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCCc
Confidence 9994 567789999999999998665 79999999999999998766555444332 55555443 457889999999
Q ss_pred EEEEECCCCeeeeE----ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-CceeEEEecccc------ceeEEEee
Q 008011 425 ILLLDREANFERWI----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKR------ARFVIRSC 493 (581)
Q Consensus 425 i~i~d~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~------~~~~i~~~ 493 (581)
|.+|++++....+. ...-.+.|++..+|....+.|+-+|.+.+..++.. .+.-..|+.|.. .++.+..+
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 99999988763322 34556889999999888899999999999998774 233345555552 37778777
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEE-ECC
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDD 551 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~-s~D 551 (581)
.++|.-..|++++.||++.+||-.....+.+...|..+|++.+|+.+| .+++-+ |.|
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G-~ifaYA~gYD 315 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG-SIFAYALGYD 315 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC-CEEEEEeecc
Confidence 789988899999999999999988888888889999999999999999 465544 443
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=232.94 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=234.4
Q ss_pred ceeeeccccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 264 TLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+... .+..++..|.+.|..+++.. ..+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 466789999999999999987 68999999999999999765 56788999999999999986 6899999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCC-EEEEEEc
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~ 421 (581)
.|.++. ...+++.+ ...+..+.-+..+..++|++. .|.|||................|.++.|+|... .|+++..
T Consensus 133 ~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 999875 45566544 345666666666777888765 599999976555555555555899999999765 4556669
Q ss_pred CCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc
Q 008011 422 EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 422 dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
|+.|.+||+++.. ..........+.++|+|.+-.++++..|..++.||++....++..+.+|...+. .+.++|.|+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~---dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM---DVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE---EeccCCCcc
Confidence 9999999999988 555566677889999998888999999999999999988888888888877643 344499999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcC
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
-+++||.|.+|+||.+..+.....+.. --..|.|+.|+-|. +++++||+|+.|++|.....+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhh
Confidence 999999999999999887755433321 23579999999999 799999999999999876443
No 69
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.4e-28 Score=245.33 Aligned_cols=269 Identities=12% Similarity=0.154 Sum_probs=210.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCee----------eEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCC
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------SLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg 339 (581)
|-..|.....++++..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666677778777777877777778876432211 01124678999999999999 889999999999
Q ss_pred cEEEEECCCC-------cEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee
Q 008011 340 AIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 340 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 411 (581)
+|++||+.++ ..+..+.+|...|.+++|+|++ +.|++|+.|++|++||+.++........|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6899999999999999998877666666777899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--eeeEecCCc-eEEEEECCCCCEEEEEe----eCCcEEEEEecCCCceeEEEeccc
Q 008011 412 DGKRIISICREAAILLLDREANF--ERWIEEEEV-ITSFSLSKDNKYLLVNL----INQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~-i~~~~~sp~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
++..|++++.|+.|++||++++. .....|.+. +..+.|.+++..+++++ .|+.|++||+++...+......+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 99999999999999999999877 333445443 45778999888877654 378999999987655555544333
Q ss_pred cceeEEEeeeCCCCCcEEEEEe-CCCcEEEEeCCCCceEEEecc-CcCCEEEEEEcCCC
Q 008011 485 RARFVIRSCFGGFEQAFIASGS-EDSQVYIWHRYTGELVLALAG-HSGSVNCVSWNPAN 541 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~-h~~~v~~l~~~p~~ 541 (581)
.. .+...+++++++++++++ .|+.|++||+.+++++..... +..++.+++|.|..
T Consensus 259 ~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 22 233455688999998887 599999999999988776544 45678899999854
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=220.03 Aligned_cols=294 Identities=18% Similarity=0.344 Sum_probs=249.2
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
..+.+..+.||.+.||.++.......+.+++.|.+.+||.++++ .+...+.+|.+.|+++.|++.+.++++++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcc
Confidence 34567789999999999999887789999999999999999988 677889999999999999999999999999999
Q ss_pred EEEEEC------CC------------------------------C----cEEEEEecCCCeEEEEEEecCCCeEEEEeCC
Q 008011 341 IRRWDV------NS------------------------------G----ECLHVYEKTGVGLISCGWFLDGGGIFAGMTD 380 (581)
Q Consensus 341 i~vwd~------~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 380 (581)
..||.. .. + .++..+.+|...|.++.|...++.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999962 11 0 1345677899999999999999999999999
Q ss_pred CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEE
Q 008011 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
.+..+||++++++.....+|....+.++-+|..+.+++.+.|.+.++||.+... ..+.+|...|+++.|..+. .++
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 999999999999999999999999999999999999999999999999999654 5677899999999998754 578
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe-----ccCcCCE
Q 008011 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL-----AGHSGSV 532 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-----~~h~~~v 532 (581)
+|+.|.+|++||+++...++.++...... ..+.. +..+..|+.--.+..|++||+. |..+..+ ++|...|
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRtdS~~-NRvav---s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRTDSPA-NRVAV---SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeecCCcc-ceeEe---ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceee
Confidence 89999999999999987777777654432 22323 4456688888888899999986 4444333 5899999
Q ss_pred EEEEEcCCCC-cEEEEEECCCcEEEEcCCCcC
Q 008011 533 NCVSWNPANL-HMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 533 ~~l~~~p~~~-~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
.|++|..+.+ .-|++||-|..+.-|.++...
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEecccC
Confidence 9999986543 358899999999999998654
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-27 Score=214.03 Aligned_cols=266 Identities=14% Similarity=0.243 Sum_probs=219.7
Q ss_pred EEEEECCCeEEEEEcccCC---------eeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEec
Q 008011 287 LASSSKDQSAIIWEVKEDG---------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
+++|+....|.=+++.... .+.....+..|.++|++++.+ +.++|+|+.|.+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5667777666666654221 123455678899999999985 88999999999999999999999999999
Q ss_pred CCCeEEEEEEecCCC--eEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008011 358 TGVGLISCGWFLDGG--GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
|.+.|+++.|.++-. +|++|+.||.|.+|+.....+......|...|+.++++|.++..++.+.|+.++.||+-.+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 89999999999999999988888888888899999999999999999999999999998887
Q ss_pred eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEE
Q 008011 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
..........+.+.|+|.|.+++++. ...|-+|.+.+. .....+..... .+ ++. .-++..+++|++|+.|.+|
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~-~~~i~i~q~d~A-~v~~~i~~~~r---~l-~~~-~l~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSG-RNKIDIYQLDNA-SVFREIENPKR---IL-CAT-FLDGSELLVGGDNEWISLK 234 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEe-ccEEEEEecccH-hHhhhhhcccc---ce-eee-ecCCceEEEecCCceEEEe
Confidence 34444555566699999999998877 556889988775 33333333211 12 222 2467899999999999999
Q ss_pred eCCCCceEEEeccCcCCEEEEEE--cCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 515 HRYTGELVLALAGHSGSVNCVSW--NPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 515 d~~~~~~~~~l~~h~~~v~~l~~--~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
|..+..+...+.+|...|.++.+ +|++ .+|+|+|.||.|+|||++..
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 99999999999999999999984 4556 79999999999999999876
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.7e-26 Score=194.53 Aligned_cols=294 Identities=17% Similarity=0.250 Sum_probs=234.4
Q ss_pred ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC------------CeeeEEEeecCCCCCeEEEEeCC
Q 008011 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED------------GQVSLKHRLSGHRKPVFTVSWSP 327 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~------------~~~~~~~~~~~h~~~V~~l~~sp 327 (581)
..+..+.+++ -+..|.+++|+|.|.+.|.|+...+.+|.....- ......+.-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3444555555 5678999999999999999999999998764311 11223445577999999999999
Q ss_pred CCCeEEEeeCCCcEEEEECCCCcE-----EEEEecCCCeEEEEEEecC----CCeEEEEe-CCCcEEEEeCCCCeeEeec
Q 008011 328 NDHQLLTCGQEEAIRRWDVNSGEC-----LHVYEKTGVGLISCGWFLD----GGGIFAGM-TDKSICLWDLDGRELESWK 397 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 397 (581)
+|.+|++|+.|.+|++.-++...+ -..+..|++.|..++|..+ +..|++++ .|..|++-|...++...-.
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987765433 2457789999999999753 34455544 4667888888777777777
Q ss_pred cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEe--------cCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 398 GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIE--------EEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 398 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~--------~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
..|.+.|.++ ++-++-.+++|+.|.+|++||++-.. ..... ....|.+++..|.|++|++|-.|....+|
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 7777777765 44568899999999999999998766 22221 23569999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCcCCEEEEEEcCCCCcE
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSGSVNCVSWNPANLHM 544 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~v~~l~~~p~~~~~ 544 (581)
|++.+ ..++.|..|... ++++.++|...|+.+++.|..|++-|+... -++.....|...+..+.|+|.. .-
T Consensus 259 dirg~-r~iq~f~phsad---ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~s 333 (350)
T KOG0641|consen 259 DIRGG-RMIQRFHPHSAD---IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FS 333 (350)
T ss_pred EeeCC-ceeeeeCCCccc---eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ce
Confidence 99998 899999999887 666667999999999999999999997532 2234455699999999999998 68
Q ss_pred EEEEECCCcEEEEcCC
Q 008011 545 LASASDDRTIRIWGLD 560 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~ 560 (581)
+++.+.|.++.+|.++
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 8999999999999875
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-27 Score=235.07 Aligned_cols=273 Identities=18% Similarity=0.290 Sum_probs=225.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe
Q 008011 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
-+.|+ ..+.||.|. ...|++|+..++. +.. ....+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~-v~~--l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGS-VTE--LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCc-eEE--eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 46687 445677765 4469999998763 222 233348899999999999999999999999999999999999999
Q ss_pred c-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe-eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008011 357 K-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 357 ~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
. |...|-+++|. +..+.+|+.|+.|..+|++..+... ....|...|..+.|++|++++++|+.|+.+.|||.....
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 89999999997 6789999999999999998654332 366777899999999999999999999999999996655
Q ss_pred --eeeEecCCceEEEEECC-CCCEEEEEe--eCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEE--EeC
Q 008011 435 --ERWIEEEEVITSFSLSK-DNKYLLVNL--INQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS--GSE 507 (581)
Q Consensus 435 --~~~~~~~~~i~~~~~sp-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s--gs~ 507 (581)
..+..|...|..++|+| ....||+|+ .|+.|++||..++ ..+........ |..+.|++..+-|++ |..
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgsQ----VcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGSQ----VCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCCc----eeeEEEcCCCCEEEEecCCC
Confidence 77889999999999999 566777764 4899999999987 55544433322 445555777665554 345
Q ss_pred CCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
++.|.||+..+.+.+..+.+|...|..++++||| ..+++|+.|.++++|++-..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCC
Confidence 7799999999999999999999999999999999 79999999999999999764
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=244.25 Aligned_cols=247 Identities=20% Similarity=0.318 Sum_probs=202.9
Q ss_pred Eeec-CCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC--------------------------------C--------
Q 008011 311 HRLS-GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--------------------------------G-------- 349 (581)
Q Consensus 311 ~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--------------------------------~-------- 349 (581)
..+. .|.+.|+++.|++||+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 8999999999999999999999999999998754 0
Q ss_pred --------------------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEE
Q 008011 350 --------------------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 350 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 409 (581)
++++.+.+|.+.|.++.|+.+ ++|++++.|.+|++|++..........+. ..|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecC-CeeEEEEe
Confidence 123345688899999999965 59999999999999999887777766555 48999999
Q ss_pred ee-CCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc----
Q 008011 410 TD-DGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH---- 483 (581)
Q Consensus 410 ~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---- 483 (581)
+| |.+++++|+-||.|++|++.... ..+.....-|++++|.|||++.++|+.+|.+++|+.... ++...+..+
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccC
Confidence 99 67899999999999999999887 667777889999999999999999999999999999876 544433211
Q ss_pred ----ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcC--CEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 484 ----KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 484 ----~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
...++.+.++...++ .|++.+.|..|+|||.++.+++..|+|+.. .-....|+.|| ++|+++++|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEE
Confidence 113445555444443 677889999999999999999999998643 33566799999 799999999999999
Q ss_pred cCCCcC
Q 008011 558 GLDQIN 563 (581)
Q Consensus 558 ~~~~~~ 563 (581)
++....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 985544
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=212.23 Aligned_cols=267 Identities=20% Similarity=0.243 Sum_probs=217.5
Q ss_pred ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC--eEEEeeC
Q 008011 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQ 337 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~ 337 (581)
+...++..+..|.++|++++. ++.|+|+||.|-+|+|||+... .....+..|.+.|+++.|.++-. .|++|+.
T Consensus 31 ~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred eeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 344567788899999999998 6889999999999999999866 34466778999999999999765 8999999
Q ss_pred CCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEE
Q 008011 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 417 (581)
||.|.+|+.....++..++.|...|+.++.+|.++..++.+.|+.++.||+-.+.......... ..+.+.|+|.|.+++
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFV 184 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999996555433333322 345599999999988
Q ss_pred EEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 418 SICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
.+..+ .|-+|.+.+.. .........+.++.|. ++..|++|..|+.|.+||.+.. .+...+.+|...+..+.... .
T Consensus 185 v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~-~ 260 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT-N 260 (362)
T ss_pred EEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-c
Confidence 87765 57788887766 3444444567777775 6778999999999999999985 88899999999887776544 7
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCC-----ceEEEeccCcCCEEEEEE
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTG-----ELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~-----~~~~~l~~h~~~v~~l~~ 537 (581)
|++.+|+++|.||.|+|||++.. +++..+.. ...++|+..
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 78899999999999999998765 34444443 445556553
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.6e-28 Score=220.25 Aligned_cols=266 Identities=18% Similarity=0.286 Sum_probs=220.4
Q ss_pred ceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCC---EEEEEECCCeEEEEEcccCCe-eeEEEe
Q 008011 237 CLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ-VSLKHR 312 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~---~lasgs~dg~i~iwd~~~~~~-~~~~~~ 312 (581)
-++..+.|+...+|+ ...+.+.++.||.++|.+++|..... .|++++.|.++++|.++.+.. ......
T Consensus 117 ~IltgsYDg~~riWd--------~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWD--------LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred eEEEeecCCeeEEEe--------cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH
Confidence 455666666666665 34667899999999999888864333 599999999999999975432 223344
Q ss_pred ecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC-------------------------CcEEEEEecCCCeEEEEEE
Q 008011 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------------------------GECLHVYEKTGVGLISCGW 367 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~ 367 (581)
..||...|-+++..++|..+++|+.|.+|.||+..+ +.++..+.+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 459999999999999999999999999999999321 2356678899999999999
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCC
Q 008011 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEE 442 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~ 442 (581)
++ ...+++++.|.+|+.||+.++.......... .+.++.++|..+.|++|+.|..+++||.+++. ..+..|..
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred cC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 87 7789999999999999998877665554443 79999999999999999999999999999876 67789999
Q ss_pred ceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 443 VITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 443 ~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.|.++.|+|.. ..|++++.|+++++||+++...++..+.+|...+..+.+ . ++.+|++|+.|++|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW---~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW---N-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec---c-CCceEEeccCcceEEEecc
Confidence 99999999955 467788999999999999986699999999887655443 2 5679999999999999864
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.7e-28 Score=226.91 Aligned_cols=282 Identities=14% Similarity=0.186 Sum_probs=236.9
Q ss_pred cccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 270 AHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
...+.|.+++|||... -+|+.+ .-.+.||+..+. ...+++......|.++.|-.||++|++|+..|.|+|||..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 3457899999999554 244443 346999998755 34455666778899999999999999999999999999877
Q ss_pred CcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCC-EEEEEEcCCeEE
Q 008011 349 GECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISICREAAIL 426 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~ 426 (581)
...++.+..|..++....|+|+ +..+++|+.|+.+++||+.+.........|...|.|.+|+|... .+++|+.||.|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 7778889999999999999995 45677888899999999999887667778888999999999755 789999999999
Q ss_pred EEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEE
Q 008011 427 LLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 427 i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
+||++... ...+.|+.+|.++.+-|.|..+++++ .+.+++||+.++.+.+..+..|...+++++. ..++..|++
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l---~s~~~rLlS 255 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRL---ASDSTRLLS 255 (487)
T ss_pred EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEe---ecCCceEee
Confidence 99999874 67788999999999999999999887 7789999999877777777778777554433 557899999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++ ..++.|..||.+.+=+...
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd-~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDD-QTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cccccceEEEEccceEEEEeee-cccceeeEEecCCC-ceEEEecccceeeeehhhc
Confidence 9999999999998899888887 57899999999998 7999999999988765443
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=225.00 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=217.8
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc---EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 385 (581)
..+.+..|.+.|+.+.||++|++||+++.|.+..+|++.... ..+++.+|..+|..+.|+||.+++++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 345678999999999999999999999999999999886543 47788899999999999999999999999999999
Q ss_pred EeCCCCeeEeeccCc-cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE-ecCCceEEEEECCCCCEEEEEeeC
Q 008011 386 WDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-EEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 386 wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
||..++......... ...+.+++|.|||..+++|+.|+.+..||++... ..+. .....|.+++.++||+++++.+.|
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999988876655443 5689999999999999999999999999999876 2232 233569999999999999999999
Q ss_pred CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCC--EEEEEEcCC
Q 008011 463 QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGS--VNCVSWNPA 540 (581)
Q Consensus 463 ~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~--v~~l~~~p~ 540 (581)
..|++|+..+. ........+ .+ +.....+.+++++.+.-.+..|++||++..+.+..+.||... |..-+|-..
T Consensus 376 ~~i~l~~~e~~-~dr~lise~-~~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 376 KKIRLYNREAR-VDRGLISEE-QP---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred cceeeechhhh-hhhcccccc-Cc---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 99999999875 222222222 22 333334889999999999999999999999999999999654 444456554
Q ss_pred CCcEEEEEECCCcEEEEcCCCcCccccc-----CCCceEEecC
Q 008011 541 NLHMLASASDDRTIRIWGLDQINMKHRD-----QSNGIVHHCN 578 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~~~~-----~~~~~~~~~~ 578 (581)
+..++++||+|+.|+||+..++++.... .+|.++|.|.
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 4469999999999999999999987543 3666666653
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-26 Score=207.40 Aligned_cols=261 Identities=13% Similarity=0.169 Sum_probs=223.7
Q ss_pred eEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC--CCcEEE
Q 008011 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT--DKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~i 385 (581)
+..+.+....+.|+++.|+++|.++++++.|.++++||..+++..+++..++..+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344555666788999999999999999999999999999999999999999999999999888888888777 889999
Q ss_pred EeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcE
Q 008011 386 WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 386 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
.++...+......+|...|++++.+|-+..+++++.|++|++||++.....-.-+...-..++|+|.|-++|++.....|
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999999999999999999999999999999998775555555666778999999999999988899
Q ss_pred EEEEecCC-CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCE---EEEEEcCCC
Q 008011 466 HLWSIESD-PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSV---NCVSWNPAN 541 (581)
Q Consensus 466 ~iwd~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v---~~l~~~p~~ 541 (581)
++||++.- ..+...+...........-+-++++|++|+.++..+.+++.|.-+|..+.++..+...- ...+|+|++
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999874 34556665543333334455569999999999999999999999999999988775432 577899999
Q ss_pred CcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 542 LHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+++++|++||+|.+|++++++......
T Consensus 245 -~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 245 -KFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred -cEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 799999999999999999988765433
No 80
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.2e-26 Score=235.39 Aligned_cols=246 Identities=11% Similarity=0.210 Sum_probs=192.8
Q ss_pred EECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEEEECCCCc--------EEEEEecCCC
Q 008011 290 SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE--------CLHVYEKTGV 360 (581)
Q Consensus 290 gs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~ 360 (581)
|+.++.|++|+.... .....+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 567889999998643 456788999999999999996 7899999999999999997642 3446778999
Q ss_pred eEEEEEEecCCCeE-EEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eee
Q 008011 361 GLISCGWFLDGGGI-FAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERW 437 (581)
Q Consensus 361 ~v~~~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~ 437 (581)
.|.+++|+|++..+ ++++.|++|++||++++....... +...|.+++|+|+|..|++++.|+.|++||++++. ..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999999988765 688999999999998776543333 33579999999999999999999999999999887 334
Q ss_pred EecCCceEE-----EEECCCCCEEEEEeeCC----cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC
Q 008011 438 IEEEEVITS-----FSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 438 ~~~~~~i~~-----~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
..|.+.+.+ ..|++++.++++++.++ .|+|||++....++..+..+... ..+...+.++++.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS-APLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc-cceEEeeeCCCCCEEEEEECC
Confidence 456554432 34568999999988774 79999999755666665443332 233344446679999999999
Q ss_pred CcEEEEeCCCCceEEEecc--CcCCEEEEEEcCCC
Q 008011 509 SQVYIWHRYTGELVLALAG--HSGSVNCVSWNPAN 541 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~l~~--h~~~v~~l~~~p~~ 541 (581)
+.|++|++..+.. ..+.. +..++.+++|.|+.
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987643 22322 56788999999975
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-28 Score=209.89 Aligned_cols=241 Identities=14% Similarity=0.240 Sum_probs=204.1
Q ss_pred ccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCC
Q 008011 271 HSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 271 h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~ 348 (581)
-.+.+..++|+++. +.+++++.||+++|||... .-.+++.++.|...|.++.|++ ++..+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 46789999999965 4888999999999999653 3357888999999999999998 566788889999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-CeeEeeccCccccEEEEEEee-CCCEEEEEEcCCeE
Q 008011 349 GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITD-DGKRIISICREAAI 425 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i 425 (581)
++.+.++.+|...|....|+| ..+.+++++.|+++++||++. ++... ...|...+.++.|+. +.+.+++++.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence 999999999999999999999 677899999999999999974 33333 555667899999997 55688999999999
Q ss_pred EEEECCCCe---eeeEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcE
Q 008011 426 LLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
+.||++... .....|.-.|..+.|||. ...|++++.|-+++|||...+...+.++.-|..-+..+.+.. .++.+
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~--~~~~~ 293 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL--FDPGQ 293 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc--ccCce
Confidence 999998866 455788889999999995 467888999999999999877677777877776655554443 36789
Q ss_pred EEEEeCCCcEEEEeC
Q 008011 502 IASGSEDSQVYIWHR 516 (581)
Q Consensus 502 l~sgs~dg~I~iwd~ 516 (581)
+|+.+.|+.++||+.
T Consensus 294 vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 294 VASTGWDELLYVWNP 308 (311)
T ss_pred eeecccccceeeecc
Confidence 999999999999983
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=232.11 Aligned_cols=323 Identities=18% Similarity=0.271 Sum_probs=253.5
Q ss_pred cceeccCCCCCceeeccCCCCcccc--ccc--ceeeeccccCcEEEEEEcCC-----------CCEEEEEECCCeEEEEE
Q 008011 236 SCLFHNTSDSDFSLYSDHQCGRNRI--PSQ--TLQILEAHSDEVWFLQFSHD-----------GKYLASSSKDQSAIIWE 300 (581)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~--~~~~l~~h~~~V~~l~~s~~-----------g~~lasgs~dg~i~iwd 300 (581)
.|.|....+....+|.||..-.+.. +.+ ....+--|...||.+.--|. ...++||+.|++|++|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 3555555555555666665433222 112 23344469999999986651 12588999999999999
Q ss_pred cccCCeeeEE----------------------------------EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 301 VKEDGQVSLK----------------------------------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 301 ~~~~~~~~~~----------------------------------~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
++....-... ...-+....+.+++.+|+|++||+|..-|+++||++
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence 8741100000 001123456999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCeEEEEEEec---CCCeEEEEeCCCcEEEEeCC-CCeeEeeccCccccEEEEEEeeCC--CEEEEEE
Q 008011 347 NSGECLHVYEKTGVGLISCGWFL---DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG--KRIISIC 420 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~ 420 (581)
..-+....+..|...|.|+.|+. ..+.|++++.|..|.+||.. ...+......|...|+++.|.-+| ..+++++
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 99999999999999999999985 45679999999999999995 455666677788899999999887 7889999
Q ss_pred cCCeEEEEECCCCe--eee-----EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc-eeEEEe
Q 008011 421 REAAILLLDREANF--ERW-----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-RFVIRS 492 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~ 492 (581)
.|..|.+--..... ..+ ......+..+++.|..+++++++.|..|+|||+.++ +..+.|++.... ...|..
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCceEEE
Confidence 99887664433211 111 223456889999999999999999999999999998 888888876654 444554
Q ss_pred eeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 493 CFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.. .|.|.||++.+.|.++.++|..+|+++.+..||...|+++.|.+|. +.|++++.||.|.||.+..
T Consensus 648 ~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 IL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 44 8999999999999999999999999999999999999999999999 7999999999999999864
No 83
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-27 Score=229.69 Aligned_cols=283 Identities=17% Similarity=0.281 Sum_probs=242.0
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEE-EEeCC-CCCeEEEeeCCCc
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSP-NDHQLLTCGQEEA 340 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp-~~~~l~s~~~dg~ 340 (581)
+..+.+.||...|..+++.++. .++++|.||++++|+-.. +++...+.+.+|.+-|.+ +++.+ ++..+++|+.|.+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3467899999999999886654 789999999999999864 445555778888888877 88876 4556999999999
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
|.+|...+..+..++.+|...|.++....++. +++|+.|.++++|-+.. +......|...|.+++.-|++ .+++|+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999998877776 99999999999998743 223366777899999999988 899999
Q ss_pred cCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc
Q 008011 421 REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 421 ~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
.|.+|++|.-.+....+..|...|..+++-+++ .|++++.||.|++|++.. ..+..+.+|...++.+.. ..++.
T Consensus 159 aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~---~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISM---ALSDG 232 (745)
T ss_pred CcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEe---cCCCC
Confidence 999999999877668888999999999998765 477889999999999954 788999999999888773 45778
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.|+++++|++++||+.. ++.+.+.-....|+++.+-++| -+++|+.||.||||..+.
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC--CEEEeccCceEEEEEecc
Confidence 99999999999999975 7777777666789999999888 488999999999998874
No 84
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=6.1e-26 Score=231.31 Aligned_cols=214 Identities=20% Similarity=0.301 Sum_probs=176.2
Q ss_pred eeeccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCe----eeEEEeecCCCCCeEEEEeCCCC-CeEEEeeCCC
Q 008011 266 QILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg 339 (581)
..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.+++. ......+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 889999999999999999975421 13456788999999999999975 6899999999
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc-ccEEEEEEeeCCCEEEE
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIIS 418 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~ 418 (581)
+|+|||+.+++....+..|...|.+++|+|++..|++++.|+.|++||++++........|. ..+..+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999998776654444443 34557788898888877
Q ss_pred EE----cCCeEEEEECCCCe--eeeE--ecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEE
Q 008011 419 IC----REAAILLLDREANF--ERWI--EEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRY 480 (581)
Q Consensus 419 ~~----~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~ 480 (581)
++ .|+.|++||+++.. .... .....+....|++++++|++++. |+.|++||+.++ .++...
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~~~ 298 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTFCS 298 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEEEe
Confidence 65 47899999998754 2222 23345666789999999999885 999999999987 444443
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=203.16 Aligned_cols=263 Identities=18% Similarity=0.206 Sum_probs=224.1
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEE--EecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEe
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV--YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd 387 (581)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|...|-.++|+| +...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999987755443 457888899999987 567899999999999999
Q ss_pred CCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEE
Q 008011 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIH 466 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 466 (581)
++.++......... .-.-+.|+|+|.++++++.|..|.+.|.++.. .........+.-++|+.++.+++.....|.|.
T Consensus 94 ~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 98877665554443 34568899999999999999999999999877 44455666788899998888888878789999
Q ss_pred EEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEE
Q 008011 467 LWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
|...... +++..++.|...-. ++.++|+|+++|+|+.|-.+.+||+..--+++.+..+.-+|..+.|+.+| ++||
T Consensus 173 ILsypsL-kpv~si~AH~snCi---cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-~~lA 247 (313)
T KOG1407|consen 173 ILSYPSL-KPVQSIKAHPSNCI---CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-RMLA 247 (313)
T ss_pred EEecccc-ccccccccCCcceE---EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-ceee
Confidence 9999877 89999999997633 33349999999999999999999999988999999999999999999999 7999
Q ss_pred EEECCCcEEEEcCCCcCccccc----CCCceEEecCC
Q 008011 547 SASDDRTIRIWGLDQINMKHRD----QSNGIVHHCNG 579 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~~~~----~~~~~~~~~~G 579 (581)
+||+|..|-|=++.++...+.. +.+.++|+|.-
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR 284 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence 9999999999999998876554 46777888764
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=232.73 Aligned_cols=275 Identities=20% Similarity=0.349 Sum_probs=226.2
Q ss_pred ccCCCCCceeeccCCCCcccccccceee-eccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCC
Q 008011 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQI-LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
....+..+.+|+ ..+...+.. +.||.+.|++++|..-+.+|++|+.|.+++|||..++ .+.+.+.+|.+
T Consensus 223 ~~s~~~tl~~~~-------~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~s 292 (537)
T KOG0274|consen 223 SGSDDSTLHLWD-------LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTS 292 (537)
T ss_pred ecCCCceeEEee-------cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCc
Confidence 344444555554 334555666 9999999999999887889999999999999999887 67899999999
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 398 (581)
.|.++... +.++++|+.|.+|++|++.++.++..+.+|..+|.++... +..+++|+.|++|++||+.+.++.....
T Consensus 293 tv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 293 SVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred eEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence 99999875 4578889999999999999999999999999999999986 8899999999999999999999888888
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC-e--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCc
Q 008011 399 QKTLRISDMAITDDGKRIISICREAAILLLDREAN-F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 399 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
.|..+|.++.+.+. ..+++|+.|++|++||+++. . ..+..|...+..+.+ .+++|++++.|+.|++||..++ .
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~-~ 444 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG-E 444 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC-c
Confidence 89999999988765 89999999999999999999 4 444455565644444 6789999999999999999998 7
Q ss_pred eeEEEec-cccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc-CCEEEEEE
Q 008011 476 LVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSW 537 (581)
Q Consensus 476 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~ 537 (581)
..+.+.+ |...+..+ .. ....+++++.||.+++||++++++...+-.+. .....+++
T Consensus 445 ~~~~~~~~~~~~v~~l---~~--~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 445 CLRTLEGRHVGGVSAL---AL--GKEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred eeeeeccCCcccEEEe---ec--CcceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 8888888 44443332 21 25789999999999999999999988774443 33334443
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.1e-28 Score=208.96 Aligned_cols=252 Identities=19% Similarity=0.323 Sum_probs=217.0
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
...-+.+++||++.||......+...-|+++.|-+.+|||.-++..+ +.+ .|..-|.+++|+.|.++|++|+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---hsf-~hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---HSF-EHKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh---hhh-hhhheeeeEEecccchhhhccchHHH
Confidence 34558899999999999999999999999999999999999887543 333 48888999999999999999999999
Q ss_pred EEEEECCCCc-EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEE
Q 008011 341 IRRWDVNSGE-CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 341 i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
++|||++..+ +...+.+|...|..+.|....+.|++.+.|++|++||.+++.......... +|+++.++++|+++.+
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEvs~dG~ilTi- 201 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEVSQDGRILTI- 201 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceeeccCCCEEEE-
Confidence 9999998754 567788999999999999999999999999999999999887766655443 8999999999976655
Q ss_pred EcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE-eccccceeEEEeeeCCC
Q 008011 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGF 497 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 497 (581)
...+.|.+||..+.. .+....+..|.+.+++|+...+++|+.|..++.||..++ ..+..+ ++|.+++. ++.++|
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVh---cVrFSP 277 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVH---CVRFSP 277 (334)
T ss_pred ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCC-ceeeecccCCCCceE---EEEECC
Confidence 466789999999876 667777888999999999999999999999999999998 444454 88888844 445599
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceE
Q 008011 498 EQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
+|...++||+||+|++|....++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999998766543
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=204.29 Aligned_cols=296 Identities=21% Similarity=0.373 Sum_probs=220.6
Q ss_pred cccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC
Q 008011 259 RIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE 338 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d 338 (581)
.+|.+...+++... -.|+.|++.|.+||+|+.||.|.|||+.+. ...+.+.+|..+|++++||++|+.|+|++.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 45666666666333 789999999999999999999999999875 4667889999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeeccCcc----ccEEEEEEeeCC
Q 008011 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKT----LRISDMAITDDG 413 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~ 413 (581)
..|.+||+..|.+++.+. ...+|+.+.|+|-. +.+++.-.+..-.+.++............. ....+..|.+.|
T Consensus 87 ~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred ceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 999999999999988885 45689999999944 334444344444444554322222221111 122334688999
Q ss_pred CEEEEEEcCCeEEEEECCCCee--ee-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC--------ceeEEEec
Q 008011 414 KRIISICREAAILLLDREANFE--RW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--------KLVSRYKG 482 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~--~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~ 482 (581)
+++++|...|.+.++|..+... .+ +.....|..+.++..|++|+..+.|..|+.|++..-. .+..++..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 9999999999999999998772 22 2224678899999999999999999999999986311 11111111
Q ss_pred cccceeEEEeeeCCCCCcEEEEEeC-CCcEEEEeCCCCceEEEeccCc-CCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 483 HKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
--+. .....|.++.+|.|+++|+. -..+|||....|.+++.+.|.. .....+.|+|-.+ .+++- ..|.|+||...
T Consensus 246 vVNk-~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 246 VVNK-LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWAVV 322 (405)
T ss_pred HHhh-hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee-eeeec-cCCceEEEEee
Confidence 1111 12233444779999988775 4589999999999999999887 5678999999884 66666 77999999986
Q ss_pred CcC
Q 008011 561 QIN 563 (581)
Q Consensus 561 ~~~ 563 (581)
...
T Consensus 323 ~~e 325 (405)
T KOG1273|consen 323 QVE 325 (405)
T ss_pred ccc
Confidence 544
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-26 Score=224.22 Aligned_cols=278 Identities=20% Similarity=0.271 Sum_probs=230.0
Q ss_pred HHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC
Q 008011 225 LVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED 304 (581)
Q Consensus 225 l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~ 304 (581)
.....++|.. ...++......+.+|+...+. .......+.+.|+++.|+++|.+||+|..+|.|.|||..+.
T Consensus 178 fY~nlldWss-~n~laValg~~vylW~~~s~~-------v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 178 FYLNLLDWSS-ANVLAVALGQSVYLWSASSGS-------VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred HhhhHhhccc-CCeEEEEecceEEEEecCCCc-------eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 3444566663 334455555677788655433 33344445899999999999999999999999999999765
Q ss_pred CeeeEEEeecC-CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEE-EecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 305 GQVSLKHRLSG-HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV-YEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 305 ~~~~~~~~~~~-h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
+....+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.
T Consensus 250 ---k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 250 ---KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred ---cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence 34466677 99999999998 67899999999999999998776555 8889999999999999999999999999
Q ss_pred EEEEeCCCCeeEeeccCccccEEEEEEeeC-CCEEEEEE--cCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEE
Q 008011 383 ICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISIC--REAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
+.|||............|...|..++|+|- ...||+|+ .|+.|++||..++. .........|.++.|++..+-|++
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 999999877777777778889999999995 45677764 69999999999988 777788999999999999887777
Q ss_pred E--eeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 008011 459 N--LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 459 ~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+ ..++.|.||+..+. +.+..+.+|...+.. ...+|+|..|++|+.|.++++|++-..
T Consensus 405 thG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~---la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-KLVAELLGHTSRVLY---LALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCCCCcEEEEecccc-ceeeeecCCcceeEE---EEECCCCCEEEEecccCcEEeccccCC
Confidence 5 44778999999986 888999999987433 344999999999999999999998664
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-27 Score=229.78 Aligned_cols=275 Identities=17% Similarity=0.302 Sum_probs=232.5
Q ss_pred CCCCEEEEEECCCeEEEEEcccCCe---eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC--cEEEEEe
Q 008011 282 HDGKYLASSSKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG--ECLHVYE 356 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~ 356 (581)
|+++||+|||.||.|++|++..... -.....+..|...|+.+....+++.|++++.|-+|++|+...+ -|+.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 4677899999999999999875432 1235678889999999999999999999999999999999887 6788899
Q ss_pred cCCCeEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCCee-----------EeeccCccccEEEEEEeeCCCEEEEEEcCCe
Q 008011 357 KTGVGLISCGW-FLDGGGIFAGMTDKSICLWDLDGREL-----------ESWKGQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 357 ~~~~~v~~~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
.|...|.|+++ .++...+++|+-|+.|.+||++++.. ......+...|.+++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999 78888999999999999999986521 1111245568999999999999999999999
Q ss_pred EEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEE
Q 008011 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
+++||.++.. .+..+|...|..+..++||..+++++.||+|++||+... .++.++..|...++.+.+ +++=..+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~---~~sf~~v 270 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQS---SPSFTHV 270 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEee---CCCcceE
Confidence 9999999987 677799999999999999999999999999999999987 888899999998666554 6778899
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 503 ASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
++|+.||.|+.=|+++......+.....+|..+..+.+. +-+-+++.|+.|+-|...-
T Consensus 271 YsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 271 YSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred EecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc-CCceeeeccccceecCCcc
Confidence 999999999999998854444444456778888877554 3346778899999998764
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.8e-27 Score=211.56 Aligned_cols=270 Identities=19% Similarity=0.282 Sum_probs=221.6
Q ss_pred eccCCCCCceeeccCCC-CcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeec-CC
Q 008011 239 FHNTSDSDFSLYSDHQC-GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GH 316 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h 316 (581)
...+.|+.+.+|.-... .+..+..+....+--|.++|.|+.||.|..+||+|+.||.|+||.+.++ .+++.+. .|
T Consensus 229 vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---~ClRrFdrAH 305 (508)
T KOG0275|consen 229 VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---QCLRRFDRAH 305 (508)
T ss_pred eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---hHHHHhhhhh
Confidence 34445555556643222 1223334444556678999999999999999999999999999999988 4556665 89
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 396 (581)
+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.+.+|...|+...|.+||.++++++.||+|++|+..+.++...
T Consensus 306 tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T 385 (508)
T KOG0275|consen 306 TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST 385 (508)
T ss_pred ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987665443
Q ss_pred cc--CccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCeeeeE----ecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008011 397 KG--QKTLRISDMAITDD-GKRIISICREAAILLLDREANFERWI----EEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 397 ~~--~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
.. ....+|+.+-.-|. ...++++...++|++.++.....+.+ ...+...+.+.||.|.++++.+.|+.++.|.
T Consensus 386 fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 386 FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 32 23346777777664 56888899999999999988774443 2356678889999999999999999999999
Q ss_pred ecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
..++ .+.+.+..|...+..+. .+|..+.+|+-++||.+++|.
T Consensus 466 ~~sG-~LE~tl~VhEkdvIGl~---HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 466 VLSG-KLERTLPVHEKDVIGLT---HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecC-ceeeeeecccccccccc---cCcccchhhhhcccchhhhcC
Confidence 9998 88888888877644433 388999999999999999995
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.9e-26 Score=202.05 Aligned_cols=288 Identities=20% Similarity=0.275 Sum_probs=211.7
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCee--eEEEeecCCCCCeEEEEeCCCCCeEEEee-CCCcE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAI 341 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i 341 (581)
+.+|++|.+.|++++|+.||++|||++.|++|+||+++.-... .+++ ..-.-+..+.+.|+||-+-++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 5678999999999999999999999999999999998742110 0111 011112357889999987665554 44579
Q ss_pred EEEECCC---CcEEE---------EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEE
Q 008011 342 RRWDVNS---GECLH---------VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 342 ~vwd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 409 (581)
++|.+.. |.... .-+.|...+..+-...++.+|.+++.|..|.+|+++++.+..... ....-...+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt-nq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT-NQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc-ccccccceee
Confidence 9997643 22111 112455667777777788999999999999999999655544443 3446778899
Q ss_pred eeCCCEEEEEEcCCeEEEEECCCCe----------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC------
Q 008011 410 TDDGKRIISICREAAILLLDREANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD------ 473 (581)
Q Consensus 410 ~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------ 473 (581)
+|+|+++++++-...|++|.+--.. ..+.+|...|..++|+++...+++.+.||.+++||.+-.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999864322 345688999999999999999999999999999998531
Q ss_pred CceeEEE--eccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cCcCCEEEEEEcCCCCcEEEEEEC
Q 008011 474 PKLVSRY--KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 474 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
++.++.. ..|......++... +|+|..|+.+. ...+.+|..++|+....+. .|...|.+++|+++| ++++|+|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~l-sP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atcG- 392 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLEL-SPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATCG- 392 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEe-CCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeeec-
Confidence 1222222 11222222234333 88998887654 4579999999998877665 599999999999999 7999987
Q ss_pred CCcEEEEc
Q 008011 551 DRTIRIWG 558 (581)
Q Consensus 551 Dg~I~iW~ 558 (581)
|..+++..
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 57788876
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.4e-25 Score=196.48 Aligned_cols=270 Identities=20% Similarity=0.274 Sum_probs=219.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
-.+.|..+.|+|.+..|+.++.||++++|++.... . ...-.|..++.+++|.+ ...+++|+-||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---L-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---h-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 46789999999999999999999999999998651 2 22345899999999986 5689999999999999999887
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.. .+..|..++.|+.+.+-...+++|+.|++|++||.+............ .|.++... ++.|++|+.+..+.+||+
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeecCceEEEEEc
Confidence 54 456888999999999988999999999999999998644433333332 67777654 779999999999999999
Q ss_pred CCCeee----eEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEeccc------cceeEEEeeeCCC
Q 008011 431 EANFER----WIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHK------RARFVIRSCFGGF 497 (581)
Q Consensus 431 ~~~~~~----~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~------~~~~~i~~~~~~~ 497 (581)
++.... ....+-.+.++++-|++.-+++++-||.|.+=.++... .....|+.|. ...+.+..+.++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 987732 23445678999999988889999999999886665531 1222344443 3456677777788
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEEC
Q 008011 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~ 550 (581)
-...++||+.||.|.+||..+.+.+..+......|.+++|+.+| ..||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 88899999999999999999999999998888889999999999 68888874
No 94
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.1e-25 Score=224.81 Aligned_cols=242 Identities=11% Similarity=0.063 Sum_probs=186.2
Q ss_pred eeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCe--------eEeeccCccccEE
Q 008011 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE--------LESWKGQKTLRIS 405 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~ 405 (581)
|+.++.|++|+......+..+.+|...|.+++|+|+ +..|++|+.|++|++||+.... .......|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566788999998888888899999999999999996 7899999999999999997431 1123345667899
Q ss_pred EEEEeeCCCEE-EEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 406 DMAITDDGKRI-ISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 406 ~i~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
+++|+|++..+ ++++.|++|++||++++. .....+...|.+++|+|+|.+|++++.|+.|+|||++++ ..+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecc
Confidence 99999998764 688999999999999887 333456778999999999999999999999999999997 777888888
Q ss_pred ccceeEE--EeeeCCCCCcEEEEEeCCC----cEEEEeCCC-CceEEEecc--CcCCEEEEEEcCCCCcEEEEEECCCcE
Q 008011 484 KRARFVI--RSCFGGFEQAFIASGSEDS----QVYIWHRYT-GELVLALAG--HSGSVNCVSWNPANLHMLASASDDRTI 554 (581)
Q Consensus 484 ~~~~~~i--~~~~~~~~~~~l~sgs~dg----~I~iwd~~~-~~~~~~l~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I 554 (581)
.+..... ....+++++.+|++++.|+ +|+|||+++ ++++..+.. +.+.+......+++ .++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECCCeE
Confidence 8754322 2222357888999888774 799999985 556655433 33333333334446 789999999999
Q ss_pred EEEcCCCcCcc------cccCCCceEEecC
Q 008011 555 RIWGLDQINMK------HRDQSNGIVHHCN 578 (581)
Q Consensus 555 ~iW~~~~~~~~------~~~~~~~~~~~~~ 578 (581)
++|++..+.+. ...+..++.+.|.
T Consensus 288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEEEccCCcEEeecccccCCCccceEEccc
Confidence 99999876432 1223456666664
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-25 Score=221.48 Aligned_cols=312 Identities=14% Similarity=0.221 Sum_probs=249.6
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCe-EEEeeCCC
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQEE 339 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~dg 339 (581)
..+.+.+++++.+.|+++.=+|-=..+|.|..+|+|.|+++..+ +.+..++...+.|+.++|..||+. +++|+..|
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSFrtDG~p~las~~~~G 267 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNG 267 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEeccCCCeeEEeccCCc
Confidence 56789999999999999999998889999999999999999987 455666655699999999999975 66667779
Q ss_pred cEEEEECCCCcEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-----------------Eeecc---
Q 008011 340 AIRRWDVNSGECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-----------------ESWKG--- 398 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-----------------~~~~~--- 398 (581)
.+.+||++..+.+.... .|.+.+....|.|....+++++.|+.+++|=.+++.- ..+..
T Consensus 268 ~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 268 DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred eEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 99999999887766655 5656777777777777777777777666553221000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 008011 399 -------------------------------------------------------------------------------- 398 (581)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (581)
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence
Q ss_pred ------------C------ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-ee-e---EecCCceEEEEECCCCCE
Q 008011 399 ------------Q------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ER-W---IEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 399 ------------~------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~-~---~~~~~~i~~~~~sp~~~~ 455 (581)
. ....+++++.++.|++.+.|+..|.|-+|++.++. .. + ..|..+|+.++.+.-++.
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence 1 12457889999999999999999999999999988 22 2 378999999999999999
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEE
Q 008011 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCV 535 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l 535 (581)
+++++.+|.+.+||.... .+...+...... .....+.....++.+..|-.|+++|..+.+.++.+.+|.+.|+++
T Consensus 508 ~vsa~~~Gilkfw~f~~k-~l~~~l~l~~~~----~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKK-VLKKSLRLGSSI----TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred EEEccCcceEEEEecCCc-ceeeeeccCCCc----ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 999999999999999886 455555433322 222224455678999999999999999999999999999999999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEcCCCcCcccc----cCCCceEEecCCCC
Q 008011 536 SWNPANLHMLASASDDRTIRIWGLDQINMKHR----DQSNGIVHHCNGRI 581 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~~~~~G~~ 581 (581)
+||||| ++|++++.|++|++||+.++.+... .....+.++|+|.+
T Consensus 583 ~FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 583 TFSPDG-RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred EeCCCC-cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 999999 7999999999999999999998753 45778889999864
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.1e-26 Score=214.62 Aligned_cols=251 Identities=18% Similarity=0.377 Sum_probs=200.6
Q ss_pred cccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccCCee-------eEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCc
Q 008011 270 AHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQV-------SLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~ 340 (581)
.|.+.|+.+.+-|.. ..+|+++..+.|.|||..+.... .+..++.+|...-++++|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 599999999999955 57778889999999998753322 233478899998889999994 457999999999
Q ss_pred EEEEECCCCc-------EEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC--CeeEeeccCccccEEEEEEe
Q 008011 341 IRRWDVNSGE-------CLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG--RELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 341 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~ 410 (581)
|++||+.... ....+.+|...|..++|++ +...|.+++.|+.+.|||+++ .+.......
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a----------- 270 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA----------- 270 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-----------
Confidence 9999997532 3567889999999999998 556788899999999999984 333333333
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeE
Q 008011 411 DDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFV 489 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 489 (581)
|...+.|++|+| ++..||+|+.|++|.+||+++...++..+.+|...++.
T Consensus 271 -----------------------------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 271 -----------------------------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred -----------------------------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 344455555555 45567888889999999999988899999999998766
Q ss_pred EEeeeCCCCCcEEEEEeCCCcEEEEeCCCC--------------ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008011 490 IRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 490 i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------------~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
+.+. +.....||+++.|+.+.|||+..- +++..-.||...|+.+.|+|+.+..|+|+++|+.+.
T Consensus 322 V~WS--Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 322 VEWS--PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEeC--CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 5542 335678999999999999997542 345777899999999999999999999999999999
Q ss_pred EEcCCCc
Q 008011 556 IWGLDQI 562 (581)
Q Consensus 556 iW~~~~~ 562 (581)
||++...
T Consensus 400 IW~~s~~ 406 (422)
T KOG0264|consen 400 IWQMAEN 406 (422)
T ss_pred Eeecccc
Confidence 9999743
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-25 Score=194.13 Aligned_cols=264 Identities=16% Similarity=0.268 Sum_probs=218.1
Q ss_pred eecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008011 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 391 (581)
.+++|..+++.+.++.+|.+|++|+.|.++.||--.+|+.+.++.+|.+.|+|+....+.+++++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCCCe---------eeeEecCCceEEEEECCCCCEEE
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF---------ERWIEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~sp~~~~l~ 457 (581)
+......... +|..+.|+++|++++.... .+.|.++|++... .+...+...++.+-|.|-+.+|+
T Consensus 85 k~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 7665554443 8999999999998887754 4679999998422 44556778999999999999999
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEE
Q 008011 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 537 (581)
+|..+|.|.+||++++.+.+.....|... |..+..+++..+++++|.|.+-++||..+-+++.++. ...+|++.++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~---Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSK---INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccc---cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 99999999999999987888887888775 4444459999999999999999999999999998887 4679999999
Q ss_pred cCCCCcEEEEEECCC-cEEEEcCCCcCcc-----------------cccCCCceEEecCCC
Q 008011 538 NPANLHMLASASDDR-TIRIWGLDQINMK-----------------HRDQSNGIVHHCNGR 580 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg-~I~iW~~~~~~~~-----------------~~~~~~~~~~~~~G~ 580 (581)
+|...+++.-||.+- -|.-=+.+.++.. +-.+.|.++++|+|+
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 998744444444331 1222222223222 123489999999997
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-26 Score=198.25 Aligned_cols=247 Identities=17% Similarity=0.282 Sum_probs=203.9
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEEEE
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vw 344 (581)
.-..|.+.|..+...--|+.||||+.|++|+|+.+.++++.....++.+|.+||+.++|.. .|.+||+|++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3457999999999988999999999999999999998887778899999999999999976 79999999999999999
Q ss_pred ECCCCcE--EEEEecCCCeEEEEEEecC--CCeEEEEeCCCcEEEEeCCCC---eeEeeccCccccEEEEEEeeC---C-
Q 008011 345 DVNSGEC--LHVYEKTGVGLISCGWFLD--GGGIFAGMTDKSICLWDLDGR---ELESWKGQKTLRISDMAITDD---G- 413 (581)
Q Consensus 345 d~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~- 413 (581)
.-.+|+- ......|...|++++|.|. |-.|++++.||.|.+.+.+.. ........|...|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9888743 3455688999999999985 556889999999999988643 344555677778999999986 4
Q ss_pred ----------CEEEEEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCC----CEEEEEeeCCcEEEEEecCCCc
Q 008011 414 ----------KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDN----KYLLVNLINQEIHLWSIESDPK 475 (581)
Q Consensus 414 ----------~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~~~ 475 (581)
+.|++|+.|..|++|+..... ..+..|...|..++|.|.- .+|++++.||++.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 579999999999999999865 4467899999999999953 5799999999999998874322
Q ss_pred e--eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 476 L--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 476 ~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
. ...+.......+ ...+++.|++|+.++.|+.|.+|.-
T Consensus 246 ~wk~tll~~f~~~~w---~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVW---RVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceE---EEEEeccccEEEEecCCcEEEEEEe
Confidence 2 222333333333 3344889999999999999999973
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2e-25 Score=207.33 Aligned_cols=251 Identities=18% Similarity=0.255 Sum_probs=210.9
Q ss_pred ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 260 IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 260 ~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
...+.+.+++||...|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||++++.||
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEEEecCCc
Confidence 3456788999999999999999999999999999999999987553 4456778999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEE
Q 008011 340 AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 417 (581)
+..+.|++++.++..... ..-.+++.+|+|||..|.+|..||.|++||+..+.....+..|.++|..++|+.+|-+|+
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA 405 (506)
T ss_pred eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence 999999999998877654 345689999999999999999999999999988877777778999999999999999999
Q ss_pred EEEcCCeEEEEECCCCe-eee--EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC-CceeEEEeccccceeEEEee
Q 008011 418 SICREAAILLLDREANF-ERW--IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD-PKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~-~~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~i~~~ 493 (581)
+++.|+.|++||++... ... ......+.++.|++.|.+|+.++.+=.|++++-.+. -..+..+..|.+.. ..+
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---t~v 482 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS---TGV 482 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc---cee
Confidence 99999999999999876 222 233446999999999999999977777777764332 14455555565442 334
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeC
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
.+.....+++++|.|..++++.+
T Consensus 483 ~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 483 RFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eecccceEEeeccchhheEEeec
Confidence 44778899999999999888754
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=199.63 Aligned_cols=260 Identities=17% Similarity=0.265 Sum_probs=202.2
Q ss_pred CCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCC-CcEE-EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008011 315 GHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNS-GECL-HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 315 ~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 391 (581)
...+.|.+++||| ...++++++.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567799999999 556677999999999999986 3332 344578899999999999999999999999999999998
Q ss_pred eeEeeccCccccEEEEEEeeCCC--EEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 392 ELESWKGQKTLRISDMAITDDGK--RIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
+....- .|..+|..+.|-+... .|++|+.|.+|++||.+... .......+.+.++.. ....++++..+..|.+|
T Consensus 105 Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred Ceeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEE
Confidence 766554 4556999999988766 89999999999999999877 555666777777765 34578889999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC--ceEEEeccCcC---------CEEEEEE
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLALAGHSG---------SVNCVSW 537 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~---------~v~~l~~ 537 (581)
++++.....+..... ..+.++++....+....+.|+-+|.+.|..+..+ +.-.+++.|.. .|++|+|
T Consensus 182 nL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 182 NLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 998875555554433 2344555554556666699999999999998876 44566777752 5788999
Q ss_pred cCCCCcEEEEEECCCcEEEEcCCCcCccc-----ccCCCceEEecCCC
Q 008011 538 NPANLHMLASASDDRTIRIWGLDQINMKH-----RDQSNGIVHHCNGR 580 (581)
Q Consensus 538 ~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~-----~~~~~~~~~~~~G~ 580 (581)
+|.. ..|+|+|.||++.+||-+....+. ..+.....|..+|.
T Consensus 260 hP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 260 HPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred eccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 9987 699999999999999986443222 22345555666665
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.2e-24 Score=209.57 Aligned_cols=276 Identities=12% Similarity=0.114 Sum_probs=203.9
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeE-EEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
+..+++++.|+.+++||..++. ....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~---~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE---VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc---eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-c
Confidence 3578899999999999998763 344555554 36789999999876 5667889999999999988777765443 5
Q ss_pred EEEEEecCCCeEEEE-eCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCC-eEEEEECCCCee-eeEe
Q 008011 363 ISCGWFLDGGGIFAG-MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-AILLLDREANFE-RWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~~ 439 (581)
..++|+|+++.++++ +.++.|++||+.+.......... ..+.+++|+|++..++++..++ .+.+||..+... ....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 678899999987665 46899999999876654433322 2578899999999999888765 567789887662 2333
Q ss_pred cCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEEeccc-----cceeEEEeeeCCCCCcEEEE-EeCCCcEE
Q 008011 440 EEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRYKGHK-----RARFVIRSCFGGFEQAFIAS-GSEDSQVY 512 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s-gs~dg~I~ 512 (581)
....+.+++|+|+++++++++ .++.|++||+.+. +.+..+..+. ......... ++++++++++ .+.++.|.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEE
Confidence 445667899999999886655 5899999999987 5555443221 111112223 3888887554 45567899
Q ss_pred EEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEE-ECCCcEEEEcCCCcCcccccC
Q 008011 513 IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 513 iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
+||..+++.+..+. +...+.+++|+|++ ..|+++ +.+|.|++||+++++......
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988876554 44578999999999 566665 579999999999988765544
No 102
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=8.7e-26 Score=219.24 Aligned_cols=284 Identities=22% Similarity=0.364 Sum_probs=223.5
Q ss_pred EEEcC---CCCEEEEEECCCeEEEEEcccCCeee----EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 278 LQFSH---DGKYLASSSKDQSAIIWEVKEDGQVS----LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 278 l~~s~---~g~~lasgs~dg~i~iwd~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
..|++ ..+.||.+..||.|.++|..... +. .......|.+.|..+.|.|....|++++.|.++++||+.+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 44554 34589999999999999986421 11 124567899999999999977789999999999999999999
Q ss_pred EEEE--EecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEe---------------------------eccCc
Q 008011 351 CLHV--YEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELES---------------------------WKGQK 400 (581)
Q Consensus 351 ~~~~--~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~---------------------------~~~~~ 400 (581)
+... +.+|...|.+++|.+.+ ..|++|+.||.|.|||++...... ....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8877 88999999999999954 567889999999999985321000 00112
Q ss_pred cccEEE---EEEeeCCCEEEEEEc-CCeEEEEECCCCeeee----------Eec---CCceEEEEECCCCCEEEEEeeCC
Q 008011 401 TLRISD---MAITDDGKRIISICR-EAAILLLDREANFERW----------IEE---EEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 401 ~~~v~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----------~~~---~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
...|.+ +.+..|...|++++. |+.|++||++...... ..+ ...++++..+..|.+|++.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 223444 556678888988887 9999999999865111 112 34578888888899999999999
Q ss_pred cEEEEEecCCC-ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCcCCEEEEEEcCCC
Q 008011 464 EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 464 ~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v~~l~~~p~~ 541 (581)
.|++|++.+.. .++..+.++....+.+..+. +|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999998743 45667777777777777666 9999999999999999999998765 456778999999999999876
Q ss_pred CcEEEEEECCCcEEEEcCCCcC
Q 008011 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
-.-++||++|.+++||++..+-
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred CCCceeeccCcceEEEeccCch
Confidence 5578999999999999996543
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.9e-26 Score=213.38 Aligned_cols=244 Identities=16% Similarity=0.251 Sum_probs=202.1
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~v 343 (581)
..++.-..+.|.++.|-.||++||.|+..|.|+|+|..+. .....+.+|+.+|..+.|+|+ +..+++|+.|+.+++
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 4455667889999999999999999999999999996542 455778999999999999995 556888888999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
||+.+......+.+|.+.|.|.+|+|- +..+++|+.||.|++||++..........|..+|..+.+-|.|..+++++ .
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-G 216 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-G 216 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-C
Confidence 999999887789999999999999995 45789999999999999987644444455666999999999999888875 4
Q ss_pred CeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCC
Q 008011 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
+.|++||+.++. .....|...|+|+.+..++..|++++-|+.+++||+.+. +.+..+.-.. + +-.+..+|++
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~~~-p---vLsiavs~dd 291 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKYPG-P---VLSIAVSPDD 291 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeeccc-c---eeeEEecCCC
Confidence 689999999665 344459999999999999999999999999999997665 6666665433 3 2233448899
Q ss_pred cEEEEEeCCCcEEEEeCC
Q 008011 500 AFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~ 517 (581)
..++.|..||.+.+-+..
T Consensus 292 ~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ceEEEecccceeeeehhh
Confidence 999999999988776543
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=6.1e-26 Score=214.12 Aligned_cols=282 Identities=16% Similarity=0.225 Sum_probs=233.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecC--CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
.|..-|.++++|...+.+.||+. |.|+|||+...+....+..+.. ....|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58889999999999999999975 5699999975443333333332 35679999999999999999999999999998
Q ss_pred CCcEEE--EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008011 348 SGECLH--VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 348 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 425 (581)
...... .+....-.+..++.+||.+..+++..||.|.|||+....+......|...+.||.+++||..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 765433 333334566778899999999999999999999999999998888999999999999999999999999999
Q ss_pred EEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEE
Q 008011 426 LLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 426 ~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
+.||++.+. .........|.++..+|++.++++|..++.+.+...... ....+..|... ++. .-|.+.|+++++
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheSc--VLS-lKFa~cGkwfvS 650 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHESC--VLS-LKFAYCGKWFVS 650 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeecccccE--EEE-EEecccCceeee
Confidence 999999887 444566788999999999999999999999988877653 23334444443 333 333778999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.+.|+-+..|...-|..+...+ -.+.|.+...+-|+ ++|+||+.|....+|.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 9999999999999898887776 35789999999999 79999999998888865
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.9e-25 Score=230.26 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=209.6
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEccc---------------CCeeeEEEeecCCCCCeEEEEeC
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE---------------DGQVSLKHRLSGHRKPVFTVSWS 326 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~V~~l~~s 326 (581)
.+.+.+...|.+.|+|+.|+|||++||+||.|+.|.||.... -..++....+.+|...|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 455677889999999999999999999999999999999872 02366788899999999999999
Q ss_pred CCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC------c
Q 008011 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ------K 400 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~ 400 (581)
|++.+|++++.|++|.|||..+.+.+.++.+|...|-.+.|.|-|++|++-+.|++|++|++....+.+.... .
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999765433332221 1
Q ss_pred cccEEEEEEeeCCCEEEEEEc----CCeEEEEECCCCe--eeeEecCCceEEEEECC-----CCC------------EEE
Q 008011 401 TLRISDMAITDDGKRIISICR----EAAILLLDREANF--ERWIEEEEVITSFSLSK-----DNK------------YLL 457 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp-----~~~------------~l~ 457 (581)
...+..+.|+|||.+|++.-. -.++.|.+..+.. ..+.+|..++.++.|+| ..+ .++
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 235788999999999998743 3468888887666 67889999999999998 112 678
Q ss_pred EEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 008011 458 VNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
+|+.|++|.||..... +++... |.-....+.-..|+|+|..|+++|.||+|.++.....
T Consensus 299 vgSqDrSlSVW~T~~~-RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALP-RPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCccEEEEecCCC-Cchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 8999999999998655 333322 2222223444555999999999999999999987654
No 106
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=208.28 Aligned_cols=283 Identities=16% Similarity=0.217 Sum_probs=227.9
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC-eEEEeeCCCcEEEEECCCCc
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~ 350 (581)
.+.|+++.|+|....|++|+.||+++||.++.. .-..+..+.--..+|.+..|.|+|. .+++++....+..||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 478999999999999999999999999999743 2245555666678999999999998 89999999999999999887
Q ss_pred EEEEEe--cC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008011 351 CLHVYE--KT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 351 ~~~~~~--~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
..+.-. ++ ...+.....++++++|+..+..|.|.+....++++....... +.|.+++|+.+++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 544322 22 234556677899999999999999999999888876655544 38999999999999999999999999
Q ss_pred EECCCCe-eeeEecCC--ceEEEEECCCCCEEEEEeeCCcEEEEEecC-----CCceeEEEeccccceeEEEeeeCCCCC
Q 008011 428 LDREANF-ERWIEEEE--VITSFSLSKDNKYLLVNLINQEIHLWSIES-----DPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 428 ~d~~~~~-~~~~~~~~--~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
||++... .......+ .-++++.++++.||++|+..|.|.|||..+ .+++++.+.. -.+.|....++++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcch
Confidence 9999987 23333333 357788899999999999999999999654 3345544443 33456677779999
Q ss_pred cEEEEEeC--CCcEEEEeCCCCceEEEeccC---cCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 500 AFIASGSE--DSQVYIWHRYTGELVLALAGH---SGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 500 ~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h---~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.+||.+|. +..+++-.+.+......++.. -+.|+|++|+|.+ .++|.|..+|.|.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 99888776 568999998887776666543 3568999999998 599999999999999885
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=211.97 Aligned_cols=243 Identities=18% Similarity=0.303 Sum_probs=207.1
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
..+.+|.|..+.|+.+.|.++++.+++++.|+.+++|++... ....++.+|.+.|+++.|......+++|+.|.+|+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 367889999999999999999999999999999999999765 66789999999999999998777799999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
.||+....|.+++... ..+..++.. ...+++|..|++|++||+++.........+. .|+++..++++..+.+++.|
T Consensus 287 ~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 287 LWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhhhhhhheecccccc-ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCC
Confidence 9999998888776433 344455544 5578899999999999999877776666665 89999999999999999999
Q ss_pred CeEEEEECCCCeeee-E-----ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 423 AAILLLDREANFERW-I-----EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 423 g~i~i~d~~~~~~~~-~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
.++.+.|+++..... + ......+.+.|||++.|+++|+.||.|+||++.++ ++...+....... .|.++.|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~-aI~s~~W~ 440 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSLSTSNA-AITSLSWN 440 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEEeccCCCCc-ceEEEEEc
Confidence 999999999987222 1 23345889999999999999999999999999998 7777776655542 45666779
Q ss_pred CCCcEEEEEeCCCcEEEE
Q 008011 497 FEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iw 514 (581)
|.|..+++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
No 108
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.4e-25 Score=210.47 Aligned_cols=291 Identities=20% Similarity=0.306 Sum_probs=228.1
Q ss_pred ccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC--eEEEe
Q 008011 258 NRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH--QLLTC 335 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~l~s~ 335 (581)
.++|..+...+.||++.|.|+...|.|.+||+|+.||+|+||.+.++. ++.++. ..+.|.|++|+|.+. .||++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 567888888999999999999999999999999999999999999884 444443 345799999999664 34443
Q ss_pred eCCCcEEEEECCCC-------------------------------------cEEEEEecCCCeEEEEEEecCCCeEEEEe
Q 008011 336 GQEEAIRRWDVNSG-------------------------------------ECLHVYEKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 336 ~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
-.. .+.|-+..-| .-++..-.|...|..+.|+..|.+|++..
T Consensus 462 ~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 322 2333332111 01223345677899999999999999876
Q ss_pred CC---CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCC
Q 008011 379 TD---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 379 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~ 453 (581)
.+ ..|.|+++.......-.....+.|.++.|+|...++++++ ...|++||+.... .........|.+++++|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 54 4799999976554443434445899999999998888765 4689999998866 5556677789999999999
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC--C----C---ceEEE
Q 008011 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY--T----G---ELVLA 524 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~--~----~---~~~~~ 524 (581)
..|++++.|+.+..||++-..++.+++..|... ++.+.+++.-.++++|+.||++.||.-. + . -++..
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 999999999999999999887899999888876 4455558888899999999999998622 1 1 24577
Q ss_pred eccCcCC----EEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 525 LAGHSGS----VNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 525 l~~h~~~----v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+.+|... |..+.|||..+ +|+|+|.||+|++|.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence 8888765 88999999996 899999999999993
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=207.39 Aligned_cols=263 Identities=16% Similarity=0.278 Sum_probs=219.2
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE-EE-----------------ecCCCeEEEEEEecCCC
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VY-----------------EKTGVGLISCGWFLDGG 372 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-~~-----------------~~~~~~v~~~~~~~~~~ 372 (581)
..+..|.-+|.+++++|++++.++++.+|+|.=|++.+|+... .+ +.|...+.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456688999999999999999999999999999998886431 10 25667899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEEC
Q 008011 373 GIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLS 450 (581)
Q Consensus 373 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s 450 (581)
+|++|+.|..|.||+.++.+.......|...|.+++|-.....+++++.|..|++|++.... ..++.|...|.++...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999988888888888899999999999999999999999999999877 7788999999999999
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc-C-
Q 008011 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG-H- 528 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h- 528 (581)
.-++.+-+|+.|.++++|++.. ...-.|.++....- ++. --+...+++|+.||.|.+|++.+.+++.+... |
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid---cv~-~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID---CVA-FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred cccceEEeccccceeEEEeccc--cceeeeeCCCCCee---eEE-EecccceeeccCCceEEEeeecccCceeEeecccc
Confidence 9999999999999999999955 34445666665533 332 12557899999999999999999888876542 2
Q ss_pred ----------cCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc----CcccccC----CCceEEecCCC
Q 008011 529 ----------SGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI----NMKHRDQ----SNGIVHHCNGR 580 (581)
Q Consensus 529 ----------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~----~~~~~~~----~~~~~~~~~G~ 580 (581)
...|++++..|.. .++++|+.+|.|++|.+.++ ++....+ .+.+.|+.+|+
T Consensus 370 v~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred ccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 1278999999987 79999999999999999877 2333333 66777777776
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=218.26 Aligned_cols=326 Identities=18% Similarity=0.212 Sum_probs=249.6
Q ss_pred cccceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEee
Q 008011 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL 313 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~ 313 (581)
..+.+|.+..|+.+.+|...+-. .......+..++.|.+.|+.++...+|+.|+++|.|-+|++|+...+. -.+..++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~-~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~sti 113 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDS-NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTI 113 (735)
T ss_pred CCceEEecCCCceEEEecccccc-CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhh
Confidence 34468999999999999754321 112223588999999999999999999999999999999999998765 3467788
Q ss_pred cCCCCCeEEEEe-CCCCCeEEEeeCCCcEEEEECCCCc--EEEE--------Ee-cCCCeEEEEEEecCCCeEEEEeCCC
Q 008011 314 SGHRKPVFTVSW-SPNDHQLLTCGQEEAIRRWDVNSGE--CLHV--------YE-KTGVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 314 ~~h~~~V~~l~~-sp~~~~l~s~~~dg~i~vwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
..|.+.|.|+++ .++...+|+||.|+.|.+||++++. .+.. +. ++..+|++++..+.+..+++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 999999999999 7888999999999999999999873 2222 22 6778999999999999999999999
Q ss_pred cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEE
Q 008011 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
.+++||.++........+|...|.++..++||..+++++.||+|++||+.... ..+..|...|.++..+|+-.++++|
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 99999999876655555788899999999999999999999999999999887 5677888889999999999999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEecc-----
Q 008011 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-------ELVLALAG----- 527 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-------~~~~~l~~----- 527 (581)
+.|+.|..=|+++..+....++. ..++..+ ....+.+-+.+++.|+.|+-|...-. .+......
T Consensus 274 ~rd~~i~~Tdl~n~~~~tlick~-daPv~~l---~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPAKSTLICKE-DAPVLKL---HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred CCCCcEEecccCCchhheEeecC-CCchhhh---hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcc
Confidence 99999999999986444443332 1221111 11222334477888999999964321 11110000
Q ss_pred ------Cc------CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 528 ------HS------GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 528 ------h~------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
|. .+|..-+.-.+. +.++|-...|.+.+||+-......
T Consensus 350 ~~~~~tp~~vi~Gg~ai~k~~mL~dk-RhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 350 CDLTNTPDSVIPGGAAIKKHAMLNDK-RHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccCCCceeccCchhhhhhhhhcCc-ceEeeecCCCCEEEEEeeeeeehh
Confidence 10 112222233344 689999999999999997665543
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=5.6e-25 Score=208.46 Aligned_cols=272 Identities=21% Similarity=0.284 Sum_probs=202.6
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeee---------
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS--------- 308 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~--------- 308 (581)
++.++.|..+.+|+-.........++.++- .....|.+++||+.|..|++.+....++|+|-+......
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~ 259 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIR 259 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhh
Confidence 345677778888864433222222223333 334578999999999988888888889999976322111
Q ss_pred EEEeecCCCCCeEEEEeCCCC-CeEEEeeCCCcEEEEECCCCc-EEEEEe-----cCCCeEEEEEEecCCCeEEEEeCCC
Q 008011 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGE-CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~-~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
-...-+||...++|.+|+|+. ..++||+.||++++||+...+ ....++ +...+++.|+|++|++.|++|+.||
T Consensus 260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG 339 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG 339 (641)
T ss_pred hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence 112357899999999999954 579999999999999997653 333333 2356789999999999999999999
Q ss_pred cEEEEeCCCC---eeEeeccCccc--cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee-----EecCCceEEEEECC
Q 008011 382 SICLWDLDGR---ELESWKGQKTL--RISDMAITDDGKRIISICREAAILLLDREANFERW-----IEEEEVITSFSLSK 451 (581)
Q Consensus 382 ~i~iwd~~~~---~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~i~~~~~sp 451 (581)
.|.+|+..+. ........|.. .|+|+.|++||++|++-+.|+++++||+++....+ +....+-+.++|||
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 9999998543 23444455554 89999999999999999999999999999876222 23445678899999
Q ss_pred CCCEEEEEee------CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 452 DNKYLLVNLI------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 452 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
+.++|++|+. .+.+.+||..+. ..+.++..... .++ -|.|+|.-+.|+.|+.||.++||-
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~a--Svv-~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDISTA--SVV-RCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccce-eeEEEecCCCc--eEE-EEeecchhhheeeecCCCceEEEE
Confidence 9999999875 467999998876 55555544432 234 445589989999999999999874
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.8e-24 Score=191.08 Aligned_cols=257 Identities=15% Similarity=0.216 Sum_probs=204.0
Q ss_pred CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe
Q 008011 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 395 (581)
....|..+.|+|.++.|+++++||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 3567999999999999999999999999999887655555 6778999999986 5689999999999999999877665
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008011 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 396 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
... |...+.|+.+++....+++|+.|++|++||.+... .........|.++.. .++.|++|+.+..+.+||+++..
T Consensus 90 igt-h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGT-HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ecc-CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 544 44599999999999999999999999999999755 444455557887776 47789999999999999999875
Q ss_pred ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC----ceEEEeccCcC---------CEEEEEEcCCC
Q 008011 475 KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG----ELVLALAGHSG---------SVNCVSWNPAN 541 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~---------~v~~l~~~p~~ 541 (581)
...+.. ...-.+.++++..-|++.-.++++-||.|.+=.++.. +....|+.|.. +|++++|+|-.
T Consensus 167 ~~~q~r--eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 167 EPFQRR--ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred chhhhc--cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 444222 2233455666666678888899999999988666555 44566777742 79999999987
Q ss_pred CcEEEEEECCCcEEEEcCCCcCcccc-----cCCCceEEecCCC
Q 008011 542 LHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCNGR 580 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~G~ 580 (581)
..|+|||.||.|.+||+.+.+.... .....++|+.||.
T Consensus 245 -~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 245 -GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred -ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 6999999999999999987765432 2245566777764
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.8e-24 Score=190.17 Aligned_cols=286 Identities=16% Similarity=0.266 Sum_probs=228.9
Q ss_pred eccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCee---------eE---EEeecCCCCCeEEEEeCC-CCCeEE
Q 008011 268 LEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQV---------SL---KHRLSGHRKPVFTVSWSP-NDHQLL 333 (581)
Q Consensus 268 l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~---------~~---~~~~~~h~~~V~~l~~sp-~~~~l~ 333 (581)
...|.+.|+++.+.+ .|+|+++|+.||.|.+||++..... .+ ...-.+|.-.|..+.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345899999999988 6889999999999999999754311 01 111246788899999999 667889
Q ss_pred EeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecC---CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEe
Q 008011 334 TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD---GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 410 (581)
+++.|.+++|||..+-+....|+. .+.|.+-+|+|- .-.+++|..|-.|++.|+.++........|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 999999999999999888777754 447888888883 3457788888899999999999999999999999999999
Q ss_pred eCCCE-EEEEEcCCeEEEEECCCCe-----------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 411 DDGKR-IISICREAAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 411 ~~~~~-l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|...+ |++|+.||.|++||++... .....|.+.+.+++|+.++.++++++.|..+++|+...
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 98875 6788999999999998642 11235678899999999999999999999999999988
Q ss_pred CCceeEEEecc--c---cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEE
Q 008011 473 DPKLVSRYKGH--K---RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 473 ~~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s 547 (581)
+....+.+... . .....+. +.+...++---.++.+.++++-++..+..+..|-..|.|.++-|+- ....+
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~~t 352 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQCFT 352 (397)
T ss_pred CcccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch-hhhhc
Confidence 75544443211 1 1111122 2233444445566999999999999999999999999999999988 68999
Q ss_pred EECCCcEEEEcC
Q 008011 548 ASDDRTIRIWGL 559 (581)
Q Consensus 548 ~s~Dg~I~iW~~ 559 (581)
+..|+.|..|-.
T Consensus 353 g~~d~ni~~w~p 364 (397)
T KOG4283|consen 353 GDMNGNIYMWSP 364 (397)
T ss_pred cccCCccccccc
Confidence 999999999987
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=5.9e-25 Score=195.72 Aligned_cols=266 Identities=16% Similarity=0.209 Sum_probs=206.5
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC------------C------cEEEEEecCCCeEEEEEEecCCC
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS------------G------ECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
..+..|..++.+.+|+|||.++++|+.|..|+|.|++. + -.++++-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45778999999999999999999999999999999871 1 24677778999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeeEee--ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee-----EecCCceE
Q 008011 373 GIFAGMTDKSICLWDLDGRELESW--KGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW-----IEEEEVIT 445 (581)
Q Consensus 373 ~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~i~ 445 (581)
.|++|+.|++|++||+.....+.- ......+|.++.|+|.|.++++|....++++||+.+.+... ..|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 999999999999999964322211 11223489999999999999999999999999999987322 35778899
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
++.+++.+++.++++.||.|++||--++ +++.++....+.. .+.+..+..+++||.+.+.|..+++|.+.+++++..+
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999999998776 6666665433333 3445555899999999999999999999999999988
Q ss_pred ccC--cC---CEEEEEEcCCCCcEEEEE-ECCCcEEEEcCCCcCccc------ccCCCceEEecCC
Q 008011 526 AGH--SG---SVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKH------RDQSNGIVHHCNG 579 (581)
Q Consensus 526 ~~h--~~---~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~------~~~~~~~~~~~~G 579 (581)
.|- .+ --+...|+.... +++.- -..+.+.-||.++..-.. .....-++++|.+
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEd-yVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTED-YVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE 408 (430)
T ss_pred ecCCcccchhhhhhhhhcCccc-eEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence 763 11 123445666653 44433 345678889988765432 2234445555544
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=214.51 Aligned_cols=278 Identities=15% Similarity=0.229 Sum_probs=222.1
Q ss_pred ccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
.+|+..-+.++|.|+|++|++++.||.|++|+...... ....+..+...|.+++- ++.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e--~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE--EPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc--CCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 47999999999999999999999999999999865421 11223337777877775 456999999999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEE
Q 008011 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 428 (581)
++.-..+.....++.+++++.+|++++.|+.|-.|++.++...........|..+|.++.|+|++++|++.+.||.|++|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 98777777778899999999999999999999999999998777777777778899999999999999999999999999
Q ss_pred ECCCCeee-eE---------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCC
Q 008011 429 DREANFER-WI---------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE 498 (581)
Q Consensus 429 d~~~~~~~-~~---------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 498 (581)
|+.++... .. .....+..++|+|++..+++...|+.|++|+..+. .....+........ +..+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEcCC
Confidence 99987621 11 12455778999999988999999999999999987 55555544333222 556677999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 499 QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 499 ~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
|.|||+++.||.|.|||.++-+. ......|.+++|.|+.+ .+-.-..-|...+|
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGTLGVS 297 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeeccccccC
Confidence 99999999999999999987222 22356899999999984 44433334443333
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.3e-23 Score=206.17 Aligned_cols=328 Identities=21% Similarity=0.296 Sum_probs=249.8
Q ss_pred CCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCC---EEEEEECCCeEEEEEcccCCe------------
Q 008011 242 TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGK---YLASSSKDQSAIIWEVKEDGQ------------ 306 (581)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~---~lasgs~dg~i~iwd~~~~~~------------ 306 (581)
..+..+.+|+.. .. ..+.+..++||.+.|.+++|...+. +||++|.|..|+||.+.....
T Consensus 166 gs~~~v~~~s~~-~d----~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 166 GSKFVVDLYSSS-AD----SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred CcceEEEEeccC-Cc----ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 344445566544 11 4567889999999999999987554 899999999999999753320
Q ss_pred ------eeEE----------EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc--E-----EEEEecCCCeEE
Q 008011 307 ------VSLK----------HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE--C-----LHVYEKTGVGLI 363 (581)
Q Consensus 307 ------~~~~----------~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~--~-----~~~~~~~~~~v~ 363 (581)
+... ..+.||.+.|+++.|+|.+..|++++.|.++.+|...+.. - +....+......
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~ 320 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW 320 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee
Confidence 0111 2245999999999999999999999999999999876542 1 222334456789
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCC---CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------
Q 008011 364 SCGWFLDGGGIFAGMTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ 434 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------ 434 (581)
++.|+|+++.+++-+..|..++|.... -.......+|...|++++|.|.|.+|++++.|.+-+++-.-..+
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence 999999999999999999999998432 12344456777799999999999999999999999998766333
Q ss_pred eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC------------------------------------------
Q 008011 435 ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES------------------------------------------ 472 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------------------------------------------ 472 (581)
.+-..|...++|+++-+....+++|.....+++|+...
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 23345788899999998777788888888889997642
Q ss_pred -CCc--------------------------------eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-----cEEEE
Q 008011 473 -DPK--------------------------------LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QVYIW 514 (581)
Q Consensus 473 -~~~--------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-----~I~iw 514 (581)
+.. .+.++.||. +.+.++..+|+++++|+++... .|++|
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG---yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG---YEVYALAISPTGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc---eeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence 000 001122333 4455666699999999998643 69999
Q ss_pred eCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc-----cCCCceEEecC
Q 008011 515 HRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCN 578 (581)
Q Consensus 515 d~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~ 578 (581)
+..+......+.+|+-.|+.++|+||+ ++|+++|.|.++.+|.......... .....++|.|+
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs 625 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS 625 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence 999999999999999999999999999 7999999999999999865443322 23667777765
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.5e-22 Score=191.54 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=218.2
Q ss_pred ceeeecccc-CcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 264 TLQILEAHS-DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 264 ~~~~l~~h~-~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
....++.+. ..|.|++|.++|. ++||.++|.|.||+..+. ...+....|.+.|.+++...+|.+ ++|+.|..|.
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~ 311 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKII 311 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEeEeeecCCceEEEEEecCccE-eecCccceEE
Confidence 344555443 6899999999997 789999999999998654 334444499999999999998865 5599999999
Q ss_pred EEECCCCc----------------------------------------EEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 343 RWDVNSGE----------------------------------------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 343 vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
.||-.-.+ ......+|....+.++.+|+...+++++.|+.
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce
Confidence 99832100 01122356678889999999999999999999
Q ss_pred EEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEee
Q 008011 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+++|+ + ....|......+..|+.|+|.| .++.|...|...+.|.++.. ........+++++.|+|+|.+|++|+.
T Consensus 392 v~lW~-~--~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 392 VRLWN-D--HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred EEEcc-C--CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC
Confidence 99999 2 2223333334589999999999 99999999999999999976 344444889999999999999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC----------------------
Q 008011 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG---------------------- 519 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~---------------------- 519 (581)
|+.|+||.+........+...+.. ..|...-|++|++++.+-+-|-.|..|.....
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999887677776666555 34556666889999988888888888842211
Q ss_pred -----------------------------------------ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 520 -----------------------------------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 520 -----------------------------------------~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
.....+.+|++.|++++|.-+. +.+++.+.|..|..|+
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWR 624 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEE
Confidence 1122344677888888888777 5666666888888887
Q ss_pred C
Q 008011 559 L 559 (581)
Q Consensus 559 ~ 559 (581)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 5
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.3e-23 Score=175.37 Aligned_cols=252 Identities=17% Similarity=0.230 Sum_probs=200.7
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC--CeeeEEEeecCCCCCeEEEEeCCC----CCeEEEe
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSGHRKPVFTVSWSPN----DHQLLTC 335 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~sp~----~~~l~s~ 335 (581)
.-....-+.|.+.|+|.+|||+|+++|+|+.|.+|++..+... +.......+.-|.+.|..++|-.+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 3344566789999999999999999999999999999876532 222233456789999999999653 4567776
Q ss_pred eC-CCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc-------CccccEEEE
Q 008011 336 GQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-------QKTLRISDM 407 (581)
Q Consensus 336 ~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~i 407 (581)
+. |..|.+-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-........ .....|.++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 54 67788889999999999999999888764 3368899999999999999997544333221 223579999
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEec
Q 008011 408 AITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKG 482 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~ 482 (581)
+..|.|+.|++|-.|....+||++.+. ..+..|...|.++.|+|...|+++++.|..|++-|+...- -++.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 999999999999999999999999988 7778899999999999999999999999999999997631 22334445
Q ss_pred cccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
|+.. .|.+ .|.|..--+++.+.|.++.+|-+.
T Consensus 318 hkdk--~i~~-rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDK--AIQC-RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCc--eEEE-EecCccceeeeccCcceEEEeccC
Confidence 5554 3433 347777788899999999999753
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.2e-24 Score=208.88 Aligned_cols=157 Identities=19% Similarity=0.326 Sum_probs=125.8
Q ss_pred CCeEEEEECCCCe------eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCC------ceeEEEecccccee
Q 008011 422 EAAILLLDREANF------ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDP------KLVSRYKGHKRARF 488 (581)
Q Consensus 422 dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~ 488 (581)
.|.|-||+++..- .-.+.....|+.+.|+| |...|++++.||.|++|.+..+. .+...+.+|...++
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 3556666655432 22233456689999999 77899999999999999997542 45567888888877
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccccc
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD 568 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~ 568 (581)
.+++.. --...|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+| +.++|.+.||+|++|+.+..+..-..
T Consensus 682 slRfHP--LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 682 SLRFHP--LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEecc--hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCcccc
Confidence 776543 245689999999999999999999999999999999999999999 79999999999999999877655332
Q ss_pred -------CCCceEEecCCCC
Q 008011 569 -------QSNGIVHHCNGRI 581 (581)
Q Consensus 569 -------~~~~~~~~~~G~~ 581 (581)
....+.|.|||++
T Consensus 759 g~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred CCCCccCcceeEEEEecCcE
Confidence 2667899999984
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.4e-25 Score=200.08 Aligned_cols=260 Identities=15% Similarity=0.216 Sum_probs=208.0
Q ss_pred EEEeecCCCCCeEEEEeCCCC-CeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008011 309 LKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 387 (581)
.+..+.+|.+.|.|++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999976 7899999999999999999999999999999999999975 7899999999999999
Q ss_pred CCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCC-EEEEEeeCCc
Q 008011 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-YLLVNLINQE 464 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~ 464 (581)
++......+... ..+..+.-+..+..+++++. .|.+||..... ..+.-....|.++.|+|... .|+++.+|+.
T Consensus 136 ~~~~p~~tilg~--s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGPPLHTILGK--SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCCcceeeecc--ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 987544443332 25666766666777777765 68899986654 45555667799999999655 5666669999
Q ss_pred EEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-ceEEEeccCcCCEEEEEEcCCCCc
Q 008011 465 IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~~p~~~~ 543 (581)
|.+||++.. .+++........ - .+.|+|.+-.+++|++|..++.||++.- .++....+|.+.|.+++|+|.| +
T Consensus 212 IvLyD~R~~-~Pl~KVi~~mRT---N-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~ 285 (433)
T KOG0268|consen 212 IVLYDLRQA-SPLKKVILTMRT---N-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-Q 285 (433)
T ss_pred eEEEecccC-Cccceeeeeccc---c-ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-c
Confidence 999999998 555544332221 1 2334778888999999999999998764 5678889999999999999999 7
Q ss_pred EEEEEECCCcEEEEcCCCcCcccc------cCCCceEEecCCC
Q 008011 544 MLASASDDRTIRIWGLDQINMKHR------DQSNGIVHHCNGR 580 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~~------~~~~~~~~~~~G~ 580 (581)
-++|||.|.+|+||.++.+..... ..+.++-|++|.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 999999999999999998876532 2377777888765
No 121
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.6e-23 Score=184.48 Aligned_cols=264 Identities=19% Similarity=0.321 Sum_probs=194.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEECCCeEEEEEc-ccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEEEEE
Q 008011 269 EAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEV-KEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~-~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd 345 (581)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||. ...+.+.+....+.|.+.|..+.|.+ -|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 479999999999999999999999999999994 44567888888999999999999976 689999999999999997
Q ss_pred CCC---------CcEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCC-CCeeEeeccCccccEEEEEEeeCC
Q 008011 346 VNS---------GECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 346 ~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
-.. -....++......|+++.|.| -|-.+++++.||.++||+.- -..+..+...+. +.-+.. |-+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E--i~~~~~-pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE--IQNVID-PPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh--hhhccC-Ccc
Confidence 421 123445667788999999998 46679999999999999873 334444433332 111110 111
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECC---CCCEEEEEeeC-----CcEEEEEecCCC---ceeEEEec
Q 008011 414 KRIISICREAAILLLDREANFERWIEEEEVITSFSLSK---DNKYLLVNLIN-----QEIHLWSIESDP---KLVSRYKG 482 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~d-----~~i~iwd~~~~~---~~~~~~~~ 482 (581)
.+..+..|+.|+| ...+|++|+.+ +.++||...... ..+..+.+
T Consensus 167 -------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 167 -------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1222344556655 34567776654 478888776543 23445668
Q ss_pred cccceeEEEeeeC-CCCCcEEEEEeCCCcEEEEeCCCC--------------------ceEEEeccCcCCEEEEEEcCCC
Q 008011 483 HKRARFVIRSCFG-GFEQAFIASGSEDSQVYIWHRYTG--------------------ELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 483 ~~~~~~~i~~~~~-~~~~~~l~sgs~dg~I~iwd~~~~--------------------~~~~~l~~h~~~v~~l~~~p~~ 541 (581)
|..++..+.+... ...-..||+++.|| |+||++... +.+..+..|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 8888666655432 11235799999999 999998631 3455677899999999999999
Q ss_pred CcEEEEEECCCcEEEEcCCCc
Q 008011 542 LHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.+|++.|+||+||+|..+-.
T Consensus 301 -tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 301 -TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred -eEEeecCCCceeeehhhhhh
Confidence 79999999999999987533
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=204.32 Aligned_cols=302 Identities=17% Similarity=0.242 Sum_probs=239.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-----------CCeEEEeeCCCcEEE
Q 008011 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-----------DHQLLTCGQEEAIRR 343 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----------~~~l~s~~~dg~i~v 343 (581)
..++.|++....|...-.|..++|||++.-.+......+.-|...|+.+.--|- ..-++||+.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346779998999999999999999999987776666777789998988876661 235899999999999
Q ss_pred EECCCCcEEEEE-------------------------------------ecCCCeEEEEEEecCCCeEEEEeCCCcEEEE
Q 008011 344 WDVNSGECLHVY-------------------------------------EKTGVGLISCGWFLDGGGIFAGMTDKSICLW 386 (581)
Q Consensus 344 wd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 386 (581)
||+..+..-.++ -.....+.+++.+|++++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998753211110 0124578999999999999999999999999
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeC---CCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCC--CEEEE
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDD---GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDN--KYLLV 458 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~--~~l~~ 458 (581)
++..-....+...|...|.|+.|+.. .+.|++++.|..|.+||..... .....|...|+++.|--.| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99988888888889999999999853 4689999999999999998766 5566789999999998877 67888
Q ss_pred EeeCCcEEEEEecCCCceeEEEeccc--cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc---CcCCEE
Q 008011 459 NLINQEIHLWSIESDPKLVSRYKGHK--RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG---HSGSVN 533 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~v~ 533 (581)
++.|..|.+=-.+.. .....+..|. .....+.-+...|..+++++++.|..|+|||+.+|+....|++ |.+...
T Consensus 567 cGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred ccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 888888765433321 2222232222 2222333444488899999999999999999999999999986 678899
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc-----cCCCceEEecC
Q 008011 534 CVSWNPANLHMLASASDDRTIRIWGLDQINMKHR-----DQSNGIVHHCN 578 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~-----~~~~~~~~~~~ 578 (581)
.+...|.| .++++...|.++.++|+-++++..+ ..+.|+.|.+|
T Consensus 646 Kv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 646 KVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred EEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 99999999 7999999999999999999998743 34677777665
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=195.98 Aligned_cols=297 Identities=14% Similarity=0.168 Sum_probs=224.1
Q ss_pred ceeeeccccCcEEEEEEcCCC--CEEEEEECCCeEEEEEcccC-CeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCC
Q 008011 264 TLQILEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEE 339 (581)
Q Consensus 264 ~~~~l~~h~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg 339 (581)
...+.+-|.++|++++|+|.. +++|+|+.-|.|-+||+.+. ....-...+..|..+|.++.|+| +...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345667799999999999965 48999999999999999522 22234566789999999999999 557899999999
Q ss_pred cEEEEECCCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-EeeccCccccEEEEEEeeCCC-E
Q 008011 340 AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWKGQKTLRISDMAITDDGK-R 415 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~-~ 415 (581)
+|+.-|++++..-..+.. ....+.++.|+.+...++.+..=|...+||+++... ......|...|..++++|... +
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999987754333333 455677788888888888888888999999976433 222333444999999999764 6
Q ss_pred EEEEEcCCeEEEEECCCCe------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec---CCCceeEEEe-ccc-
Q 008011 416 IISICREAAILLLDREANF------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE---SDPKLVSRYK-GHK- 484 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~-~~~- 484 (581)
+++++.|++.+|||++... .....|...|.++.|||.+-.|++.+.|..|+|||.. ....+...+. .+.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 8899999999999998754 3456789999999999988889999999999999984 2213333222 111
Q ss_pred -cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcC-CEEEE-EEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 485 -RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSG-SVNCV-SWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 485 -~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~v~~l-~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.....+... |.|+.++|++|..-..|-|+|-..++.+..+..... .|.++ .|||-+..+++-++..|.|+||.-+.
T Consensus 418 ~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 418 GRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 122233333 488999999999999999999988888887765433 56654 69998832555555678888886543
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=188.34 Aligned_cols=254 Identities=20% Similarity=0.331 Sum_probs=211.8
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcc------cC------------------------------
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK------ED------------------------------ 304 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~------~~------------------------------ 304 (581)
...|+..+.||.+.|+|++|++.+.++++++.|++..||... .+
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 467899999999999999999999999999999999999831 10
Q ss_pred -CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008011 305 -GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 305 -~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.--.+...+.+|...|.+..|...|+.+++++.|.+..+||+++|+.+..+.+|....+.|+-+|..+.+++.+.|.+.
T Consensus 259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF 338 (481)
T ss_pred ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCcee
Confidence 0012456788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEe
Q 008011 384 CLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 384 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
++||.+. -.....+.+|...|+++.|..+. .+++++.|.+|++||+++.. ...+....+++.++++..+..++.-.
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc
Confidence 9999974 23345566777799999998765 68899999999999999987 66778889999999999999999999
Q ss_pred eCCcEEEEEecCCCceeE----EEeccccceeEEEeeeCCCCC--cEEEEEeCCCcEEEEeCCCC
Q 008011 461 INQEIHLWSIESDPKLVS----RYKGHKRARFVIRSCFGGFEQ--AFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 461 ~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~l~sgs~dg~I~iwd~~~~ 519 (581)
.+..|++||+... .+.+ .-.+|.. .+.++.|..+. .-|++++.|..+.-|.+...
T Consensus 418 DNRqvRlfDlnG~-RlaRlPrtsRqgHrR---MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 418 DNRQVRLFDLNGN-RLARLPRTSRQGHRR---MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCceEEEEecCCC-ccccCCcccccccce---eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999999875 2221 2234444 45555554332 45788899999999997654
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.5e-24 Score=211.21 Aligned_cols=288 Identities=15% Similarity=0.244 Sum_probs=218.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe-eeEEEeecCCC---CCeEEEEeCC-CCCeEEEeeCCCcEEEEECC
Q 008011 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHR---KPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~---~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~ 347 (581)
.....|...++-..++.++. ...+|+.+..... ..+...+.... -.+..+.|.. +.++|||++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34456667788777877764 3578887764332 12222222111 2355678875 56899999999999999998
Q ss_pred C---CcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-CCCEEEEEEcC
Q 008011 348 S---GECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIISICRE 422 (581)
Q Consensus 348 ~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d 422 (581)
. .+.+..|..|...+.++.|++ ....|++|+.||+|++||++...-..........|.++.|+| .+..++++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 7 566778899999999999998 456788999999999999987776666655667899999998 46789999999
Q ss_pred CeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCC
Q 008011 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
|.+.+||++... .++..|.++|.++.|+|++.+|++|+.|+.|+|||+.+. ........++ +..+..+.|-|..
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~-~~~~~~tInT--iapv~rVkWRP~~ 275 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS-RAKPKHTINT--IAPVGRVKWRPAR 275 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC-CccceeEEee--cceeeeeeeccCc
Confidence 999999999877 677899999999999999999999999999999999864 2222222221 2223344445544
Q ss_pred -cEEEEEeC--CCcEEEEeCCCC-ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCc
Q 008011 500 -AFIASGSE--DSQVYIWHRYTG-ELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 500 -~~l~sgs~--dg~I~iwd~~~~-~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..|++++. |-.|+|||++.. -+..++..|...++.++|.......+.+++.||+|..-.+++...
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 45666654 779999998754 346788899999999999876567899999999998877765543
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=9.1e-23 Score=204.14 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=230.3
Q ss_pred cceeeeccccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
+.+..++.-.+.|+.++|..||. .+|+|+..|.+.+||++.... .......|.+.|....|.|....+++++.|+.+
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--INVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--eeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 34556664469999999999998 677888889999999985421 112223566666666666666666666666666
Q ss_pred EEEECCCCc-----------------EEE---------------------------------------------------
Q 008011 342 RRWDVNSGE-----------------CLH--------------------------------------------------- 353 (581)
Q Consensus 342 ~vwd~~~~~-----------------~~~--------------------------------------------------- 353 (581)
++|=.+++. +++
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 555322110 000
Q ss_pred ---------------------------------------------EE-----ecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008011 354 ---------------------------------------------VY-----EKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 354 ---------------------------------------------~~-----~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.+ +.....+++++.++.|++.+.|+..|.|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 00 0012457888889999999999999999
Q ss_pred EEEeCCCCeeEeec---cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEE
Q 008011 384 CLWDLDGRELESWK---GQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 384 ~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
-+|++.++-..... ..|..+|+.++...-++.+++++.+|.+.+||..+.. .........++++..+.....++++
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 99999988776665 4677899999999999999999999999999999887 5556677889999999999999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcC
Q 008011 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p 539 (581)
..|-.|.++|..+. +.++.+.+|.+.+. ...++|+|++|++++.|++|++||+.++.++-.+. -..+++++.|+|
T Consensus 553 ~ddf~I~vvD~~t~-kvvR~f~gh~nrit---d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTR-KVVREFWGHGNRIT---DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred cCceeEEEEEchhh-hhhHHhhcccccee---eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence 99999999999998 89999999998844 44449999999999999999999999999988776 467899999999
Q ss_pred CCCcEEEEEECC-CcEEEEcCC
Q 008011 540 ANLHMLASASDD-RTIRIWGLD 560 (581)
Q Consensus 540 ~~~~~l~s~s~D-g~I~iW~~~ 560 (581)
+| .+|||+..| .-|++|.-.
T Consensus 628 ng-D~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 628 NG-DFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CC-CEEEEEEecCceEEEEEch
Confidence 99 799999988 779999744
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=208.28 Aligned_cols=263 Identities=18% Similarity=0.313 Sum_probs=214.2
Q ss_pred cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC-cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008011 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG-ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 392 (581)
..|....+.++|.|+|++|++|+.||.|++|+.... +...++..+...|.+++. ++.+|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468888999999999999999999999999997765 444444446677777765 45699999999999999998877
Q ss_pred eEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 393 LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 393 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
..........++++++++.+|++++.|+.|-.|++.+..... ..+..|..+|.++.|+|++++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 776666666799999999999999999999999999998766 677899999999999999999999999999999999
Q ss_pred cCCCceeEEEeccccc-----eeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEecc--CcCCEEEEEEcCCCCc
Q 008011 471 ESDPKLVSRYKGHKRA-----RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAG--HSGSVNCVSWNPANLH 543 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~v~~l~~~p~~~~ 543 (581)
.++ .+...+.+-... ...+.-..|+|++..++..+.|+.|++|+..+++....+.. |...+.++.|+|+| .
T Consensus 168 ~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG-~ 245 (933)
T KOG1274|consen 168 QDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG-K 245 (933)
T ss_pred ccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC-c
Confidence 986 554444432211 11233345699988888899999999999999999888865 45559999999999 7
Q ss_pred EEEEEECCCcEEEEcCCCcCccc-ccCCCceEEecCCC
Q 008011 544 MLASASDDRTIRIWGLDQINMKH-RDQSNGIVHHCNGR 580 (581)
Q Consensus 544 ~l~s~s~Dg~I~iW~~~~~~~~~-~~~~~~~~~~~~G~ 580 (581)
+||+++.||.|.|||.++..... ....-+.+|.+++.
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EEeeeccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence 99999999999999999743311 22356666666653
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.8e-21 Score=184.32 Aligned_cols=289 Identities=16% Similarity=0.261 Sum_probs=223.4
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC-CCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
....+.-++.|..+.|+|.+.-|+.....+.+..|+...+.-.+....+..+. ..|.|++|.++|. +++|..+|.|.|
T Consensus 193 ~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~I 271 (626)
T KOG2106|consen 193 LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILI 271 (626)
T ss_pred cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEE
Confidence 33455567888999999966655444457889999998776555555555543 4699999999885 789999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe------------eEe----------------
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE------------LES---------------- 395 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~------------~~~---------------- 395 (581)
|+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-.-++ +..
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 99988888877779999999999998885 5559999999999842111 000
Q ss_pred ------------eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCC
Q 008011 396 ------------WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 396 ------------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
....|......++.+|+.+.+++++.|+.+++|+ ............+..++.|+|.| .+++|+..|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccc
Confidence 0113344677888999999999999999999999 33335556677889999999999 999999999
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEec-cCcCCEEEEEEcCCC
Q 008011 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLALA-GHSGSVNCVSWNPAN 541 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~-~h~~~v~~l~~~p~~ 541 (581)
...+.|..+. ..+..-.. ..+ +.++.++|+|.+||.|+.|+.|+||.+..+. ...... .|.++|+.+.|++|+
T Consensus 429 ~w~V~d~e~~-~lv~~~~d-~~~---ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIHTD-NEQ---LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred eEEEEecccc-eeEEEEec-CCc---eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 9999999884 44444333 333 5666669999999999999999999976543 333332 244899999999999
Q ss_pred CcEEEEEECCCcEEEEcCCCcC
Q 008011 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+++.+-+.|-.|..|.....+
T Consensus 504 -~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 504 -QFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred -ceEEeccCceEEEEEccccCc
Confidence 799999999999999544433
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-24 Score=213.30 Aligned_cols=243 Identities=12% Similarity=0.175 Sum_probs=201.8
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCCCcEE
Q 008011 275 VWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGECL 352 (581)
Q Consensus 275 V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~ 352 (581)
+..|.|+. +.++|||++..|.|.+||+.....-+....+..|...|+++.|++ ...+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566764 567999999999999999976333345567889999999999998 5578999999999999999999999
Q ss_pred EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008011 353 HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
.++.+....|..+.|+| .+..|+++...|.+.+||++. .........|.++|.|+.|+|++.+|++|++|+.|++||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 99989999999999999 677899999999999999975 4445556778889999999999999999999999999999
Q ss_pred CCCe---eeeEecCCceEEEEECCCCCE-EEEEee--CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEE
Q 008011 431 EANF---ERWIEEEEVITSFSLSKDNKY-LLVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 431 ~~~~---~~~~~~~~~i~~~~~sp~~~~-l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
.+.. ...+....++.++.|-|...+ |++++. |-.|+|||++....+...+..|...+..+.+ -+.+-..+.+
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W--~~~d~~~l~s 327 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW--DSGDRINLWS 327 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec--cCCCceeeEe
Confidence 8765 566778889999999997765 444443 7789999999988888999999887555433 3456678899
Q ss_pred EeCCCcEEEEeCCCC
Q 008011 505 GSEDSQVYIWHRYTG 519 (581)
Q Consensus 505 gs~dg~I~iwd~~~~ 519 (581)
++.||.|..-.++++
T Consensus 328 ~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNA 342 (839)
T ss_pred ecCccHHHHhhhhcc
Confidence 999998876555444
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=6.5e-23 Score=201.19 Aligned_cols=331 Identities=17% Similarity=0.262 Sum_probs=254.5
Q ss_pred HHHHcccc-ceeccCCCCCceeeccCCC-CcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe
Q 008011 229 ALDVQRDS-CLFHNTSDSDFSLYSDHQC-GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (581)
Q Consensus 229 ~~~~q~~~-~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~ 306 (581)
++.||+.. .+++.+.|..+-+|..... +.+. ..-.+..+.|.....+...|+|++..+++-+..|-.++|.......
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence 45566665 7778888888888865433 1111 1112334456677899999999999999999999999999665566
Q ss_pred eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC-C---cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-G---ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
+.......||.+.|+.++|+|.|.+|++.+.|.+-|++-.-. . ..+..-+.|....+|+++-+....+++|.....
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 677778899999999999999999999999999999986541 1 223334567888999999887778888888889
Q ss_pred EEEEeCCC----------C-e----------------------eE--------------e--------------------
Q 008011 383 ICLWDLDG----------R-E----------------------LE--------------S-------------------- 395 (581)
Q Consensus 383 i~iwd~~~----------~-~----------------------~~--------------~-------------------- 395 (581)
+++|+... + . .. .
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99987630 0 0 00 0
Q ss_pred ---------eccCccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEE
Q 008011 396 ---------WKGQKTLRISDMAITDDGKRIISICREA-----AILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 396 ---------~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~ 459 (581)
...+|...|.+++.+|+++.+++++... .|++|+..+-. .....|.-.|+.++||||+++|++.
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence 0015667899999999999999998754 68999988866 5577899999999999999999999
Q ss_pred eeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC--ceEEE--eccCcCCEEEE
Q 008011 460 LINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--ELVLA--LAGHSGSVNCV 535 (581)
Q Consensus 460 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--~~~~~--l~~h~~~v~~l 535 (581)
+.|.++.+|...........|..-+.....|..|.|+|++.+++|+|.|.+|++|..... +.+.. ...+..+|+++
T Consensus 591 sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 999999999986653444443333333445777888999999999999999999998777 44433 34578999999
Q ss_pred EEcCCCC----cEEEEEECCCcEEEEcCC
Q 008011 536 SWNPANL----HMLASASDDRTIRIWGLD 560 (581)
Q Consensus 536 ~~~p~~~----~~l~s~s~Dg~I~iW~~~ 560 (581)
+|.|-.. .+++.|-..|.|.+|...
T Consensus 671 ~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 671 AYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EeeccccccccceEEEEecccEEEEEecc
Confidence 9987431 377888899999999976
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=194.89 Aligned_cols=268 Identities=17% Similarity=0.271 Sum_probs=208.5
Q ss_pred EECC-CeEEEEEcccCCeeeEEEeecCC-CCCeEEEEeCCCCCeEEEeeC-CCcEEEEECCCCcEEEEEecCCCeEEEEE
Q 008011 290 SSKD-QSAIIWEVKEDGQVSLKHRLSGH-RKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (581)
Q Consensus 290 gs~d-g~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 366 (581)
++.| .++.+||+.++.. ..++++. ...-.++..- ++.+++++.. ...+.+|.+...........-.+++.+++
T Consensus 13 sS~d~~~~~~~dl~TGt~---~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTS---LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred cCCCCcceeEEecCCCce---eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeee
Confidence 3344 4599999998743 2334433 1111111111 3456666654 45799999876655553444567899999
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----------e
Q 008011 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-----------E 435 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~ 435 (581)
-+|+|.+++.|+..|.|++|.+.++.+......|-..|+|+.|+.||.+|++|+.||.|.+|++..-. .
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 99999999999999999999999999988888888899999999999999999999999999864321 4
Q ss_pred eeEecCCceEEEEECCC--CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEE
Q 008011 436 RWIEEEEVITSFSLSKD--NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI 513 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i 513 (581)
.+..|.-+|+.+...+. ..++++++.|.++++||+..+ .++..+.... .+.++..+|.+..+++|+++|.|.+
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~----si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPS----SIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCC----cceeEEEcccccEEEecCCcceEEe
Confidence 56678889999988764 468999999999999999998 6666554433 2556666999999999999999999
Q ss_pred EeCCCC----------------ceEEEeccCcC--CEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 514 WHRYTG----------------ELVLALAGHSG--SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 514 wd~~~~----------------~~~~~l~~h~~--~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.++... ..+..+.+|.+ .|+|++.+-|| .+|++|+.||.|+|||+...++...
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHH
Confidence 875432 34566788988 99999999999 7999999999999999988776543
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=196.55 Aligned_cols=272 Identities=20% Similarity=0.270 Sum_probs=218.9
Q ss_pred CEEEEEE-CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEE
Q 008011 285 KYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (581)
Q Consensus 285 ~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 363 (581)
.+++++. .-..+.+|.+....+.. ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 4666654 34568999987543322 2233567899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCC---------CCeeEeeccCccccEEEEEEeeCC--CEEEEEEcCCeEEEEECCC
Q 008011 364 SCGWFLDGGGIFAGMTDKSICLWDLD---------GRELESWKGQKTLRISDMAITDDG--KRIISICREAAILLLDREA 432 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~i~d~~~ 432 (581)
|+.|+.|+.+|++|+.||.|.+|.+. +.........|.-+|+++.+.+.| .++++++.|.++++||+..
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 99999999999999999999999872 223344556677799999988764 5899999999999999999
Q ss_pred Ce-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---------------ceeEEEeccccceeEEEeeeCC
Q 008011 433 NF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP---------------KLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 433 ~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
+. ......+..+.+++.+|-+..+++|+.+|.|.+.++.... ..+..+.+|.+. ..|++...+
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLais 286 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAIS 286 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEEe
Confidence 98 6677888999999999999999999999999998875532 234456677762 235566668
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-.+..+..-+....+-.|++.
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 8999999999999999999999999999887789999999977653333333344455556554
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-22 Score=194.71 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=231.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC-CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
-..+|.++||+.+.+.||.+-.||.|.||++..+ +-....+.++. ..|-+++|++ +..|++.+.+|.|.-||+.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 4578999999999999999999999999999853 44555666654 5699999994 667889999999999999999
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008011 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES--WKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
+....+....+.|++++.+|.+..++.|+.||.++.++...+.+.. ......+++.+++|+|++..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999999999999999999988888887766543 33444569999999999999999999999999
Q ss_pred EECCCCeeee-----E-e----cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC
Q 008011 428 LDREANFERW-----I-E----EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 428 ~d~~~~~~~~-----~-~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
||...+.... . . ...-|.++.|-.+ ..|++|...|.|.+||...+ .+++.+..|...+..+.. .+
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl~Lav---~~ 255 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVLALAV---AD 255 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-chhhhhhhhhcceeEEEE---cC
Confidence 9999887322 1 1 2234677777754 47889999999999999988 788888888887655544 67
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCce----EEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 498 EQAFIASGSEDSQVYIWHRYTGEL----VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+++.+++++.|+.|.-|...+++. ......|...|.+++..++ .+++||.|.++.+-.....
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~ 321 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREF 321 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEcccccc
Confidence 889999999999999988766533 2334568889999999874 7999999999998776653
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.7e-23 Score=177.00 Aligned_cols=231 Identities=22% Similarity=0.346 Sum_probs=190.5
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcC--CCCEEEEEECCCeEEEEEcccCCeeeEEEeecC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~ 315 (581)
+...+.|..+.+|.-... -+.+.+.+|.||.++|+.++|.. -|.+||+++.||.|.||.-.++ ++........
T Consensus 26 lATcsSD~tVkIf~v~~n----~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~ 100 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNN----GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAA 100 (299)
T ss_pred eeeecCCccEEEEEEcCC----CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhh
Confidence 445678888888865433 23678899999999999999987 8999999999999999998754 7777788889
Q ss_pred CCCCeEEEEeCCC--CCeEEEeeCCCcEEEEECCCC---cEEEEEecCCCeEEEEEEecC---C-----------CeEEE
Q 008011 316 HRKPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSG---ECLHVYEKTGVGLISCGWFLD---G-----------GGIFA 376 (581)
Q Consensus 316 h~~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~s 376 (581)
|...|++++|.|. |-.|++++.||.|.|.+.++. ...+....|...|++++|.|- | +.|++
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 9999999999994 568999999999999988764 233456688999999999985 4 56999
Q ss_pred EeCCCcEEEEeCCCCe--eEeeccCccccEEEEEEeeCC----CEEEEEEcCCeEEEEECCCCe-----eeeEecCCceE
Q 008011 377 GMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDG----KRIISICREAAILLLDREANF-----ERWIEEEEVIT 445 (581)
Q Consensus 377 g~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~ 445 (581)
|+.|..|+||+.+... .......|...|++++|.|.- .+|++++.||++.||..+... .........+.
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w 260 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVW 260 (299)
T ss_pred cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceE
Confidence 9999999999997643 344466777899999999964 479999999999999887432 22234567799
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.+.||+.|+.|++++.|+.+.+|.-...
T Consensus 261 ~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 261 RVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9999999999999999999999986543
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=199.25 Aligned_cols=262 Identities=15% Similarity=0.257 Sum_probs=214.6
Q ss_pred cccceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEE-EEEcC-CCCEEEEEECCCeEEEEEcccCCeeeEEE
Q 008011 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWF-LQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKH 311 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~ 311 (581)
...|+..++.++.+++|..+....- ..+.+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|..... .+..
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l-----~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~~ 95 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYL-----ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPLY 95 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccc-----cceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cchh
Confidence 3458888898999999976543321 24567788888888 88876 4456999999999999999765 5668
Q ss_pred eecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008011 312 RLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 312 ~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 391 (581)
++.+|...|.|++...++. +++|+.|.++++|.. +++...+.+|...|+++...|++ .+++|+.|.+|++|.- +
T Consensus 96 ~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~ 169 (745)
T KOG0301|consen 96 TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--G 169 (745)
T ss_pred hhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--C
Confidence 8999999999999887776 999999999999975 56677799999999999999988 8999999999999985 4
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
........|...|+.+++-+++ .+++++.||.|+.|++.... .....|...+.+++..+++..++++++|++++||+.
T Consensus 170 ~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 170 TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 4555555688899999999875 57899999999999997666 778899999999998889999999999999999998
Q ss_pred cCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
. .+.+.+.-....++...+.. +| -|++|+.||.||||...
T Consensus 249 ~---e~~q~I~lPttsiWsa~~L~---Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 249 D---ECVQVITLPTTSIWSAKVLL---NG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred C---ceEEEEecCccceEEEEEee---CC-CEEEeccCceEEEEEec
Confidence 6 55666655555555544432 33 37889999999999765
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.8e-23 Score=196.27 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=211.9
Q ss_pred CCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEE
Q 008011 245 SDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS 324 (581)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~ 324 (581)
+.+.+|+-... .++.|...+-.+ .....|.++...|||+.|++|+.-.++.|||+.... ......+....-...+++
T Consensus 440 gcVKVWdis~p-g~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa 516 (705)
T KOG0639|consen 440 GCVKVWDISQP-GNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALA 516 (705)
T ss_pred CeEEEeeccCC-CCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhh
Confidence 34566654433 233332222222 245789999999999999999999999999998542 233444555455678899
Q ss_pred eCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccE
Q 008011 325 WSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI 404 (581)
Q Consensus 325 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v 404 (581)
.+||.+..++|+.||.|.|||+.+...++.|.+|...+.|+..++||..|.+|+-|++|+.||++.+......... ..|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554433333 489
Q ss_pred EEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 405 SDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
.++.++|++.++++|-.++.+.+....... .....|+..|.++.|.+.|+++++.+.|+-+..|...-+..+... +..
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-kE~ 674 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KES 674 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-ccc
Confidence 999999999999999999999999988776 666788999999999999999999999999999998777333322 211
Q ss_pred ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
..+.+|-.+.+.++|++|+.|....||.+
T Consensus 675 ----SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 ----SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ----CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 13556666899999999999998888864
No 137
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=4.7e-22 Score=183.82 Aligned_cols=292 Identities=16% Similarity=0.243 Sum_probs=224.4
Q ss_pred cCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccC------CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKED------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..+|.++.|.+++. .||||+.|..|+||.+..+ ..+.....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999877 9999999999999988632 2456677889999999999999999999999999999999
Q ss_pred ECC--------C--------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEE
Q 008011 345 DVN--------S--------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMA 408 (581)
Q Consensus 345 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 408 (581)
... + ....+.+.+|...+..++|+|++..+++++.|..+++||+..+.+......|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123455668889999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCe----ee-----------------eEecC----CceEEEEECCCCCEEEEEee--
Q 008011 409 ITDDGKRIISICREAAILLLDREANF----ER-----------------WIEEE----EVITSFSLSKDNKYLLVNLI-- 461 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~----~~-----------------~~~~~----~~i~~~~~sp~~~~l~~~~~-- 461 (581)
|.|-++++++-+.|...+.+++.... .. ..-|+ .-...++|+|+|.++++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999888866666654432 00 01111 22456789999999987542
Q ss_pred --CC-----cEEEEEecCCCceeEEEeccccceeEEEeee---------------CCCCCcEEEEEeCCCcEEEEeCCCC
Q 008011 462 --NQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRSCF---------------GGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 462 --d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~---------------~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
.+ ..++|+-.....+...+.........++++. .-|.+..++.++ .+.|+|||.++.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc
Confidence 22 3456665554455555555555444444431 122333444444 567999999998
Q ss_pred ceEEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 520 ELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 520 ~~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.++..... |-..|++++|+++| ..++..|.||...+-.++..++-
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcchhcc
Confidence 88776654 88999999999999 69999999998888776655543
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=197.02 Aligned_cols=298 Identities=19% Similarity=0.270 Sum_probs=210.4
Q ss_pred ccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCC
Q 008011 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP 319 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 319 (581)
-...++.+.++...... .+...+.+.....|.+.|..+.|.|....|++++.|.++++||+....- .-...+.+|.+.
T Consensus 69 vadE~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~~S 146 (720)
T KOG0321|consen 69 VADEDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHTGS 146 (720)
T ss_pred EecCCCceeeecchhhh-cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccccc
Confidence 34455566666433211 1112223556678999999999999666899999999999999987532 222348899999
Q ss_pred eEEEEeCCC-CCeEEEeeCCCcEEEEECCCCc---------------------------EEEEEecCCCeEEE---EEEe
Q 008011 320 VFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE---------------------------CLHVYEKTGVGLIS---CGWF 368 (581)
Q Consensus 320 V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~~~~~v~~---~~~~ 368 (581)
|.+++|.|. ...|++|+.||.|.|||++-.. .+..-..+...|.+ +.++
T Consensus 147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f 226 (720)
T KOG0321|consen 147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF 226 (720)
T ss_pred cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence 999999994 5678999999999999986321 01111233344555 6667
Q ss_pred cCCCeEEEEeC-CCcEEEEeCCCCeeEe------ec-----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee
Q 008011 369 LDGGGIFAGMT-DKSICLWDLDGRELES------WK-----GQKTLRISDMAITDDGKRIISICREAAILLLDREANFER 436 (581)
Q Consensus 369 ~~~~~l~sg~~-dg~i~iwd~~~~~~~~------~~-----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 436 (581)
.|...|++++. |+.|+|||++...... .. ......+.++.....|.+|.+.|.|+.|++|++.+....
T Consensus 227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence 78899999887 9999999997432111 11 111235778888888999999999999999999876511
Q ss_pred ----eEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCc
Q 008011 437 ----WIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 437 ----~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
+..+ ...-..-..+||+.++++|+.|...++|.+.........+.+|...++.+.++. ++.... +++++|..
T Consensus 307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~v-~TcSdD~~ 384 (720)
T KOG0321|consen 307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTPV-ATCSDDFR 384 (720)
T ss_pred chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCCc-eeeccCcc
Confidence 1111 111223457899999999999999999999998888888999999888877766 555554 55599999
Q ss_pred EEEEeCCCCc--------------eEEEeccCcCCEEEEEEcCCC
Q 008011 511 VYIWHRYTGE--------------LVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 511 I~iwd~~~~~--------------~~~~l~~h~~~v~~l~~~p~~ 541 (581)
++||++..+- ....+++|...+..+.|+-.+
T Consensus 385 ~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~ 429 (720)
T KOG0321|consen 385 VKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRK 429 (720)
T ss_pred eEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccc
Confidence 9999986552 223445565555555554433
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.3e-20 Score=184.75 Aligned_cols=280 Identities=13% Similarity=0.082 Sum_probs=199.9
Q ss_pred ccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEE-EEEECCCeEEEEEcccCCeeeEEEeecCCCC
Q 008011 240 HNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
....+..+.+|+... .+.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..++. ....+..+..
T Consensus 6 s~~~d~~v~~~d~~t-------~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~ 74 (300)
T TIGR03866 6 SNEKDNTISVIDTAT-------LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGPD 74 (300)
T ss_pred EecCCCEEEEEECCC-------CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCCC
Confidence 344566677775332 234566665544 6789999999976 567788999999998653 3344444433
Q ss_pred CeEEEEeCCCCCeEEEe-eCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC-cEEEEeCCCCeeEee
Q 008011 319 PVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESW 396 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~ 396 (581)
+..++|+|+++.++++ +.++.+++||+.+++.+..+... ..+.+++|+|++..++++..++ .+.+||..+......
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 5678999999877654 56899999999998877776533 3467899999999999988775 467789987665443
Q ss_pred ccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCee-eeEe-c-------CCceEEEEECCCCCEEEEE-eeCCcE
Q 008011 397 KGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFE-RWIE-E-------EEVITSFSLSKDNKYLLVN-LINQEI 465 (581)
Q Consensus 397 ~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~-~-------~~~i~~~~~sp~~~~l~~~-~~d~~i 465 (581)
.... ..+..++|+++++.+++++ .++.|++||+.+... .... + ......++|+|++++++++ ..++.+
T Consensus 153 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 153 VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 2222 2567899999999886554 689999999998762 2211 1 1123568899999986654 456789
Q ss_pred EEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE-eCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcC
Q 008011 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p 539 (581)
.+||+.+. +....+.. ... +....++|++.+|+++ +.+|.|.+||+.+++++..+... ...++++++|
T Consensus 232 ~v~d~~~~-~~~~~~~~-~~~---~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTY-EVLDYLLV-GQR---VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCC-cEEEEEEe-CCC---cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999876 44444322 222 2233458999998876 46899999999999999988754 5558888875
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2e-22 Score=189.22 Aligned_cols=241 Identities=16% Similarity=0.274 Sum_probs=187.8
Q ss_pred Hcccccee-ccCCCCCceeeccCCCCcccc---cccceeeeccccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCe
Q 008011 232 VQRDSCLF-HNTSDSDFSLYSDHQCGRNRI---PSQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQ 306 (581)
Q Consensus 232 ~q~~~~~~-~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~ 306 (581)
..+..+++ ..+....+.+|.-........ ...+-.+|.||.++=+.++|++... .|++|+.|++|++||+.....
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 33333444 345556677775332221111 4456678999999989999999654 899999999999999975443
Q ss_pred ----eeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECC--CCcEEEEEecCCCeEEEEEEec-CCCeEEEEe
Q 008011 307 ----VSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVN--SGECLHVYEKTGVGLISCGWFL-DGGGIFAGM 378 (581)
Q Consensus 307 ----~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~ 378 (581)
......+.+|...|..++|++ +..+|++++.|+.+.|||++ +.++.+....|...+.|++|+| ++..||+|+
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 556678899999999999999 55788999999999999999 5667778889999999999999 566788999
Q ss_pred CCCcEEEEeCCC-CeeEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-------------e---eeEec
Q 008011 379 TDKSICLWDLDG-RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF-------------E---RWIEE 440 (581)
Q Consensus 379 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-------------~---~~~~~ 440 (581)
.|++|++||++. .........|...|.++.|+|.. ..|++++.|+.+.+||+..-. . ..-+|
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc
Confidence 999999999985 33344455666799999999975 467888999999999987532 1 12256
Q ss_pred CCceEEEEECCCCCE-EEEEeeCCcEEEEEecC
Q 008011 441 EEVITSFSLSKDNKY-LLVNLINQEIHLWSIES 472 (581)
Q Consensus 441 ~~~i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~ 472 (581)
...|..+.|+|+..+ +++.+.|+.++||.+..
T Consensus 373 ~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 373 TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 778999999997765 56677899999999864
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=186.20 Aligned_cols=261 Identities=17% Similarity=0.276 Sum_probs=213.9
Q ss_pred CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC--CcEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCe
Q 008011 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--GECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~ 392 (581)
..++|+++.|+|....|++|+.|++++||.+.. ...++.+.-...+|.+++|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 346799999999999999999999999998864 345666666688999999999999 89999999999999998877
Q ss_pred eEeeccC---ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 393 LESWKGQ---KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 393 ~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
+..+... ....+....+++++++|+..+..|.|.+....++. ...+..++.|..++|+.|++.|++++.+|.|++|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 6555432 23357788899999999999999999999999988 6777888999999999999999999999999999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC------CceEEEeccCcCCEEEEEEcCCCC
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT------GELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~------~~~~~~l~~h~~~v~~l~~~p~~~ 542 (581)
|++.. .++.++..... +.....|. ++++.++|+|+..|.|.|||.++ .+++..+..-...|+++.|+|+.
T Consensus 372 nl~~~-~~~~rf~D~G~-v~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~- 447 (514)
T KOG2055|consen 372 NLRQN-SCLHRFVDDGS-VHGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA- 447 (514)
T ss_pred ecCCc-ceEEEEeecCc-cceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-
Confidence 99998 77777764433 33344444 88999999999999999999654 46677777777899999999999
Q ss_pred cEEEEEE--CCCcEEEEcCCCcCccccc--------CCCceEEecCCC
Q 008011 543 HMLASAS--DDRTIRIWGLDQINMKHRD--------QSNGIVHHCNGR 580 (581)
Q Consensus 543 ~~l~s~s--~Dg~I~iW~~~~~~~~~~~--------~~~~~~~~~~G~ 580 (581)
++||.|| .+..+|+-.+......... ....+.|+|+|.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 6888777 4677888777665543322 277888888764
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.1e-23 Score=207.39 Aligned_cols=254 Identities=17% Similarity=0.306 Sum_probs=220.3
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI 363 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 363 (581)
+.++..+..+..+++|+... +..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 33455555666778888752 356888888888867788999999999999999988888888999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC-Ce-eeeEecC
Q 008011 364 SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA-NF-ERWIEEE 441 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~-~~~~~~~ 441 (581)
++.|+++...|++|+.+|+|++||+...........|...+..+.|+|-+.+.+.++.|+.+.+||.+. +. ..+..|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence 999999999999999999999999998887777778888999999999999999999999999999994 44 4455678
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008011 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
..+..+.|+|+|++++.++.|..+++||+..+ +....|..|...+..+. ++|..-++++|+.|++|++||+++.+.
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEE
Confidence 88999999999999999999999999999888 88999999988755544 588889999999999999999999999
Q ss_pred EEEeccCcCCEEEEEEcCCCCcEEEEEECC
Q 008011 522 VLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 522 ~~~l~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+.........|.+++|+|++ ..+.+|..+
T Consensus 231 I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCc-eeeecCchh
Confidence 99888888999999999999 566665443
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=174.96 Aligned_cols=274 Identities=21% Similarity=0.251 Sum_probs=210.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcccCC-------e--eeEEEeec-CCCCCeEEEEeC-------CCCCeEEEeeCC
Q 008011 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDG-------Q--VSLKHRLS-GHRKPVFTVSWS-------PNDHQLLTCGQE 338 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs~dg~i~iwd~~~~~-------~--~~~~~~~~-~h~~~V~~l~~s-------p~~~~l~s~~~d 338 (581)
..+.|||||..|++-+.|..+.+|++.... . ......+. .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 357899999999999999999999985321 0 00111111 123457777775 577899999999
Q ss_pred CcEEEEECCCCcEEEEEecCC-----CeEEEEEEecCCCeEEEEeCCCcEEEEeC-CCCee---Eee----ccCccccEE
Q 008011 339 EAIRRWDVNSGECLHVYEKTG-----VGLISCGWFLDGGGIFAGMTDKSICLWDL-DGREL---ESW----KGQKTLRIS 405 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~sg~~dg~i~iwd~-~~~~~---~~~----~~~~~~~v~ 405 (581)
.-|++||.-+|+....+..-+ ....+++|+|||.+|++|. ...|++||+ +.+.- ... .....+-+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 999999999999877765432 2456899999999999874 578999999 33221 111 112245789
Q ss_pred EEEEeeCCC-EEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEe
Q 008011 406 DMAITDDGK-RIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 406 ~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~ 481 (581)
+++|+|-.. .+++++....+-+|.-.... .....|.+.|+.+.|.++|+.|++|.. +..|..||++....++..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 999999655 88888888887777666555 566689999999999999999999887 77999999998878888887
Q ss_pred cccc-ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC-CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCC
Q 008011 482 GHKR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-GELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 482 ~~~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
.|.. ....|.+-. .|++++|++|+.||.|++||++. |..+..+..|+..|+.++++|-- .+++|++...
T Consensus 292 rhv~~TNQRI~FDl-d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGqr 362 (406)
T KOG2919|consen 292 RHVGDTNQRILFDL-DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQR 362 (406)
T ss_pred hhccCccceEEEec-CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCce
Confidence 7766 333333333 78999999999999999999988 78788889999999999999987 4888887543
No 144
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=177.61 Aligned_cols=293 Identities=16% Similarity=0.198 Sum_probs=221.4
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC---CeeeEEEee-cCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED---GQVSLKHRL-SGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~---~~~~~~~~~-~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
.+.+.+|.+.|+++.||.++++||+|+.|..+++|+++.- ...+++... ..|...|.|++|.....++++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3456789999999999999999999999999999998631 111222222 345678999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecC--CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe----eEeeccCccccEEEEEEeeCCC
Q 008011 341 IRRWDVNSGECLHVYEKT--GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE----LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~ 414 (581)
|...|+++.+.+..+... .+.|..+..+|..+.|++.+.++.|.+||.+..+ +... .........+.|+|...
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCc
Confidence 999999999988877543 4589999999999999999999999999997543 2221 22223577888998654
Q ss_pred -EEEEEEcCCeEEEEECCCCeee------eE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc
Q 008011 415 -RIISICREAAILLLDREANFER------WI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK 484 (581)
Q Consensus 415 -~l~~~~~dg~i~i~d~~~~~~~------~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 484 (581)
.|++.+..+-+-+||.+..... +. .....-.++.|+|+|+.|++--....-.+||+-....++..+....
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 5677788889999999876511 11 1223346789999999999877777778899887545555544222
Q ss_pred c---ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-----------------------ceEEEeccCcCCEEEEEEc
Q 008011 485 R---ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-----------------------ELVLALAGHSGSVNCVSWN 538 (581)
Q Consensus 485 ~---~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~v~~l~~~ 538 (581)
. ....+.+|.+- +..-+++|+.+-.|++|.+... +.+..+++|.+.++.|.|+
T Consensus 288 ~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 1 22234444433 3455999999999999986421 2356788999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEcCC
Q 008011 539 PANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 539 p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
|.. ++|++.+-.+.++||.-.
T Consensus 367 ~H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 367 QHN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCc-ceEeccchhhheeccccc
Confidence 998 799999999999999754
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-20 Score=184.39 Aligned_cols=245 Identities=19% Similarity=0.270 Sum_probs=201.8
Q ss_pred CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEE-EEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee
Q 008011 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL-HVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 393 (581)
-..+|.+++|+.+++.||.+-.+|.|.+|++..+-.. ..+.++ +..|.+++|. ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 4567999999999999999999999999999886433 344444 6789999999 567899999999999999998887
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee----eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008011 394 ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE----RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 394 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
........+.|.+++.+|.+..++.||.||.++.++...+.. .+....+.+.+++|+|++..++.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 777777778999999999999999999999888888887772 2234468899999999999999999999999999
Q ss_pred ecCCCceeE----EEeccc-cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcE
Q 008011 470 IESDPKLVS----RYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHM 544 (581)
Q Consensus 470 ~~~~~~~~~----~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~ 544 (581)
...+..... ...... ....+....+. ....|++|..-|+|.+||...+.++..+..|.+.|.+++..+++ ..
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~-d~ 259 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE-DR 259 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC-Ce
Confidence 998743331 111112 12222222332 45689999999999999999999999999999999999999998 69
Q ss_pred EEEEECCCcEEEEcCCCcCc
Q 008011 545 LASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 545 l~s~s~Dg~I~iW~~~~~~~ 564 (581)
++++|.|+.|.-+...+.+.
T Consensus 260 vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEccCCCceEEEEecCCcc
Confidence 99999999999998877644
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=183.39 Aligned_cols=241 Identities=18% Similarity=0.299 Sum_probs=184.4
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEe------------------ecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHR------------------LSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRR 343 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~v 343 (581)
.|+|+|.|+.|..|.|||+.-.....+... ..+|+..|.+++|+.+ .+.||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 367999999999999999863322221111 2379999999999874 467999999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
||+.++++..++..|...|.++.|+| ....|++|+.|++|.+.|.+... -....|.-
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-----------~s~~~wk~----------- 328 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-----------NSGKEWKF----------- 328 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-----------ccCceEEe-----------
Confidence 99999999999999999999999999 45678999999999999987411 11112221
Q ss_pred CeEEEEECCCCeeeeEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcE
Q 008011 423 AAILLLDREANFERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
.+.|-.++|.|. ...+++++.||+++-+|++...+++..+..|...+..+... .....+
T Consensus 329 ------------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n--~~~p~~ 388 (463)
T KOG0270|consen 329 ------------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN--IQTPGL 388 (463)
T ss_pred ------------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec--CCCCcc
Confidence 223666677664 34577778899999999999889999999999987665443 445578
Q ss_pred EEEEeCCCcEEEEeCCCCce--EEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 502 IASGSEDSQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++++.|+.|++|++..... +..-.-.-+...|.++.|+-+..++.||..+.++|||+.+....
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999999999999764433 22111113457788899988889999999999999999876543
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=5.3e-21 Score=172.19 Aligned_cols=290 Identities=20% Similarity=0.324 Sum_probs=223.5
Q ss_pred eeeccccCcEEEEEEcC-----CCCEEEEEECCCeEEEEEcccCCeeeEEEeec--CCCCCeEEEEeCCC----CCeEEE
Q 008011 266 QILEAHSDEVWFLQFSH-----DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSPN----DHQLLT 334 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~-----~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~sp~----~~~l~s 334 (581)
+..+.|+.+|..++|++ .-..+|+.+. ..+.+|...........+... .|......++|+-+ +.++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45568999999999985 2346666654 569999987655334443332 47777888899763 457999
Q ss_pred eeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeecc---CccccEEEEEEe
Q 008011 335 CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAIT 410 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~ 410 (581)
+|.-|.|+|.|+.++++...+.+|...|..+.+.|+. +++++++.|..|++|++++........ .|...|.++.|+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999999965 678899999999999999988776653 567799999999
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe-----ee-------------------------eEecCCceEEEEECCCCCEEEEEe
Q 008011 411 DDGKRIISICREAAILLLDREANF-----ER-------------------------WIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~-----~~-------------------------~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
++|.++++++.|.+|++|++.... .. ...|...|.|+.|- |+++++-+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks 268 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS 268 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence 999999999999999999998433 00 01123334444442 57888888
Q ss_pred eCCcEEEEEecC-C------------CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceE--EEe
Q 008011 461 INQEIHLWSIES-D------------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV--LAL 525 (581)
Q Consensus 461 ~d~~i~iwd~~~-~------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~l 525 (581)
-++.|..|..-. . ......+.......+.++..+ .+.++.||.|...|.|++||++..++. .++
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 899999998721 1 123344555556667777776 788999999999999999999887663 222
Q ss_pred cc--CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 526 AG--HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 526 ~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.. ....|...+|+.|+ .+|+...+|++|.-||.-
T Consensus 348 ~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 21 24679999999999 699999999999999853
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.3e-23 Score=203.35 Aligned_cols=237 Identities=17% Similarity=0.296 Sum_probs=204.7
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+... ..+..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 445679999999998778899999999999999998644 34456899999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008011 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 425 (581)
++.++.++++.+|...+.++.|+|-+.+++.|+.|+.+++||++..-+...+..|...+..+.|+|+|++++.++.|..+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 99999999999999999999999999999999999999999998544444455577789999999999999999999999
Q ss_pred EEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEE
Q 008011 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
++||...+. ..+..|...+.++.|+|..-.++.|+.|+++++||+++. ..+....... ..+++..+.+++..++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~---~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPET---DGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCcc---CCceeeeecCCceeee
Confidence 999999888 456679999999999999999999999999999999875 4444433332 3366666799999999
Q ss_pred EEeCCC
Q 008011 504 SGSEDS 509 (581)
Q Consensus 504 sgs~dg 509 (581)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 887654
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-22 Score=208.72 Aligned_cols=284 Identities=19% Similarity=0.267 Sum_probs=219.8
Q ss_pred EEEEcCCCC-EEEEE----------ECCCeEEEEEcccCCe---eeEEEeecCCCCCeEEEEeCCCCCe----EEEeeCC
Q 008011 277 FLQFSHDGK-YLASS----------SKDQSAIIWEVKEDGQ---VSLKHRLSGHRKPVFTVSWSPNDHQ----LLTCGQE 338 (581)
Q Consensus 277 ~l~~s~~g~-~lasg----------s~dg~i~iwd~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~----l~s~~~d 338 (581)
.++|+|++. ++|+| +.+.++.||.+..... ++....+ .-....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 578999887 66655 3355667776642211 1122222 23456789999997765 8889999
Q ss_pred CcEEEEECCC---C---cEEEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeeEee--ccCccccEEEEEE
Q 008011 339 EAIRRWDVNS---G---ECLHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELESW--KGQKTLRISDMAI 409 (581)
Q Consensus 339 g~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~ 409 (581)
|.|.+||... + ..+..+..|.+.|..+.|++... .|++|+.||.|.|||+..-+.... .......|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999865 2 24566778999999999999655 899999999999999975332221 1223457999999
Q ss_pred eeCC-CEEEEEEcCCeEEEEECCCCe--eeeEec--CCceEEEEECCCCC-EEEEEeeCC---cEEEEEecCCCceeEEE
Q 008011 410 TDDG-KRIISICREAAILLLDREANF--ERWIEE--EEVITSFSLSKDNK-YLLVNLINQ---EIHLWSIESDPKLVSRY 480 (581)
Q Consensus 410 ~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~--~~~i~~~~~sp~~~-~l~~~~~d~---~i~iwd~~~~~~~~~~~ 480 (581)
+..- ..|++++.+|.+.|||++..+ ..+..+ ...+..++|+|+.. .+++++.|. .|.+||++....+++.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 9754 467888889999999999886 233222 23478999999764 566776654 69999999888899999
Q ss_pred eccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 481 KGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 481 ~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.+|...+..+.+| ..|..++++++.|+.|.+|+.++++.+..+......+..+.|+|..+.+++.++-||.|-|+.+.
T Consensus 250 ~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 250 EGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 9999986665554 45669999999999999999999999999998889999999999999899999999999999997
Q ss_pred CcC
Q 008011 561 QIN 563 (581)
Q Consensus 561 ~~~ 563 (581)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 665
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3e-20 Score=166.60 Aligned_cols=265 Identities=18% Similarity=0.277 Sum_probs=191.6
Q ss_pred EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc-----EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEE
Q 008011 311 HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSIC 384 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~ 384 (581)
..+++|.+.|++++|+.||++|++++.|++|++|+++.-. +++. ...-+..+.+.|.||.+-+++.. ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3578999999999999999999999999999999987632 1111 11123567899999988766655 455899
Q ss_pred EEeCCCCe-----e-------EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee-EecCCceEEEEECC
Q 008011 385 LWDLDGRE-----L-------ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW-IEEEEVITSFSLSK 451 (581)
Q Consensus 385 iwd~~~~~-----~-------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~i~~~~~sp 451 (581)
+|.+..++ . ..+...|...+..+-...++.+|++++.|..|.+|+++...... ......-+..+.||
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 99874211 1 11233445567778888889999999999999999999655333 34445567789999
Q ss_pred CCCEEEEEeeCCcEEEEEecCCC-------ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC----C-
Q 008011 452 DNKYLLVNLINQEIHLWSIESDP-------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT----G- 519 (581)
Q Consensus 452 ~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~----~- 519 (581)
+|+++++++-...|++|.+--.. ..+..+++|... +.+..++++...+++.|.||+++|||+.- +
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999873211 234457788876 33444599999999999999999999642 1
Q ss_pred --ceEEEe----ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc------ccCCCceEEecCCCC
Q 008011 520 --ELVLAL----AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH------RDQSNGIVHHCNGRI 581 (581)
Q Consensus 520 --~~~~~l----~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~------~~~~~~~~~~~~G~~ 581 (581)
+.+... ..-.+....++.+|.| ..|+. +....++++..++++... ......+.|+++|++
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 222222 1122334489999999 45554 445689999988877543 334778889999874
No 151
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=6.3e-22 Score=197.75 Aligned_cols=296 Identities=15% Similarity=0.263 Sum_probs=229.9
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
+.+..|.||..+|+|+.|...|.++++|+.|..|+||..++. .+.....||.+.|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 445667899999999999999999999999999999998766 56788999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe----eccCccccEEEEEEeeCCCEEEE
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES----WKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~ 418 (581)
+|.+.++..+..+.+|.+.|++++|+|-. +.+.||++++||.+-..... ........+.++.+...+..+++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999999999999999854 77889999999987211111 11122235777788888889999
Q ss_pred EEcCCeEEEEECCCCeeeeEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC
Q 008011 419 ICREAAILLLDREANFERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
++.|+.-..|...... .+...+.-+..+.+ ..+.+++-.+..+.+|++.++ .......+|....+++....+
T Consensus 334 gs~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf-- 406 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF-- 406 (1113)
T ss_pred ccCCcccccchhhHhh----hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--
Confidence 9999887777654322 01111111111112 245556666788999999988 788889999999888877543
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccCCCce
Q 008011 498 EQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGI 573 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~ 573 (581)
+.....+++.||...|||+-.|.++..+....+.+..-+|+++| ..++...+-|.+.|.....++.....+.+.+
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~s~k~ak~dqf 481 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSKSQKKAKYDQF 481 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCccccccccceE
Confidence 44677899999999999999988876654334667777899999 5777777779999998887776655444333
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=3.6e-20 Score=180.95 Aligned_cols=242 Identities=19% Similarity=0.318 Sum_probs=188.8
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcE
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAI 341 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i 341 (581)
...++++++|++.|+|++|+.||+.+|+|+.|..|.||+-.-.+.+ -..|.+.|.|+.|+|-...|++|+-. ..
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kYSH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KYSHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----eeccCCeeeEeecCchHHHhhhcchh-hc
Confidence 4468899999999999999999999999999999999987644322 23699999999999999999999865 56
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeE--eeccCccccEEEEEEeeCC-----C
Q 008011 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQKTLRISDMAITDDG-----K 414 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~-----~ 414 (581)
-+|........+ . .....+.+++|..||.+++.|-.+|+|.+-+-.+.+.. ...++...+|.+++|+|.. .
T Consensus 117 glWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred cccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence 788765443221 1 22457889999999999999999999999876544332 3334566799999999864 4
Q ss_pred EEEEEEcCCeEEEEECCCCee-eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008011 415 RIISICREAAILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
.+++.....++.+|.+..... +....+-...|+.+-++|.++++|+.|+.+++|.-+. ..+.+....... |..+
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G--vrLGTvg~~D~W---IWtV 269 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG--VRLGTVGEQDSW---IWTV 269 (1081)
T ss_pred eEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC--eEEeecccccee---EEEE
Confidence 678888888899888887662 2344555678999999999999999999999998654 344444443333 3334
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeC
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
...|++++++.|+.||+|..|++
T Consensus 270 ~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 270 QAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEccCCceEEEEEccCeeehhhh
Confidence 44899999999999999999975
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=181.84 Aligned_cols=272 Identities=14% Similarity=0.220 Sum_probs=213.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.|..++|-|||..|+.+. +..+.|||...+ ....++++|.+.|+|++|+.||+.+++|+.|..|.+|+-.-.-.+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 889999999999887775 446999999987 456889999999999999999999999999999999985432222
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008011 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.+ .|...|.|+.|+|-...|++++-. ..-+|..+.+.+..... ..++.+++|..||++++.|-.+|+|.+-+....
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~ks--s~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKS--SSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhh--heeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 22 678899999999998888888753 46688876555443332 347999999999999999999999999876554
Q ss_pred ee-eeE---ecCCceEEEEECCCC-----CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEE
Q 008011 434 FE-RWI---EEEEVITSFSLSKDN-----KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 434 ~~-~~~---~~~~~i~~~~~sp~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
.. ... +.+++|.+++|+|.. ..+++...+.++.+|.+... .+..- ..-.+.-.+..+-++|.++..
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~Igk~---r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QIGKD---RALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--eeccc---ccCCCCchhheeccCCcEEEE
Confidence 42 222 357789999999953 46788888888888888763 22111 111111223334679999999
Q ss_pred EeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 505 GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 505 gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
|+.|+.+.+|- +.|-.+.++......|+.++..|++ +.++.|+.||+|--|++-.
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence 99999999997 5677888888788899999999999 7999999999999998754
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=170.38 Aligned_cols=205 Identities=15% Similarity=0.259 Sum_probs=167.1
Q ss_pred eccccCcEEEEEEcCCC--CEEEEEECCCeEEEEEcccC-------------CeeeEEEeecCCCCCeEEEEeCC-CCCe
Q 008011 268 LEAHSDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKED-------------GQVSLKHRLSGHRKPVFTVSWSP-NDHQ 331 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp-~~~~ 331 (581)
.-+|.+.|+.+.-++-+ .+.|+-+..|.|.||++... ....++.++.+|...=++++||| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888888888755 46667778899999998521 23456778899999999999999 2335
Q ss_pred EEEeeCCCcEEEEECCCCcEE---EEEecCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCe--eEeeccCccccEE
Q 008011 332 LLTCGQEEAIRRWDVNSGECL---HVYEKTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRIS 405 (581)
Q Consensus 332 l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~ 405 (581)
|++|..-+.|++|...+|.-. ..+.+|...|-.++|+|. ...|++|+.||+|+|||++.+. .......|...|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 888888899999999887532 345679999999999994 5578899999999999998762 2222356667999
Q ss_pred EEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecC
Q 008011 406 DMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~ 472 (581)
.|.|+..-.+|++|+.||++++||+++.+ ..+..|..+|+++.|+| +...|++++.|..|.+||+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999998899999999999999999866 46788999999999999 456788889999999999964
No 155
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-21 Score=182.99 Aligned_cols=296 Identities=22% Similarity=0.325 Sum_probs=236.6
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
...|..|.+.|..|.|+..|..|++||.|..|.+||+.... ....-..+|...|....|-| +...+++++.||.|+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 45678899999999999999999999999999999998653 23344568999999889988 457899999999999
Q ss_pred EEECCC-CcE--EEEEecCCCeEEEEEEecCCC-eEEEEeCCCcEEEEeCCCCeeE---eeccCcc---ccEEEEEEeeC
Q 008011 343 RWDVNS-GEC--LHVYEKTGVGLISCGWFLDGG-GIFAGMTDKSICLWDLDGRELE---SWKGQKT---LRISDMAITDD 412 (581)
Q Consensus 343 vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~---~~v~~i~~~~~ 412 (581)
+=.+.. +.+ ...+..|.++|..++.-|+.. .|++++.|+.+.-+|++..... .....+. .....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887643 333 345567888999999988654 5889999999999999753321 1222222 25678888887
Q ss_pred CC-EEEEEEcCCeEEEEECCCCeee--------eE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---
Q 008011 413 GK-RIISICREAAILLLDREANFER--------WI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--- 474 (581)
Q Consensus 413 ~~-~l~~~~~dg~i~i~d~~~~~~~--------~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--- 474 (581)
.. .+++++.|..+++||.+.-... +. .....|++++|+.++.-|++...|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 65 8899999999999998764311 11 234569999999999889999999999999543211
Q ss_pred --------ceeEE-EeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEE
Q 008011 475 --------KLVSR-YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 475 --------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l 545 (581)
..++. |++|.....+-..-||.|...|+++||.-|.|.||+-.+++.+..+.+....|+||.-+|.-| +|
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P-vL 451 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP-VL 451 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-hh
Confidence 22334 899998887777788999999999999999999999999999999998777999999999996 99
Q ss_pred EEEECCCcEEEEcCCCcC
Q 008011 546 ASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~ 563 (581)
||+|-|.-|+||...+.+
T Consensus 452 AsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hccCCccceeeecCCccc
Confidence 999999999999984433
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=7.1e-21 Score=166.35 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=198.5
Q ss_pred cccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeec-CCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 261 PSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 261 ~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
|..+...|++|.+.|+|+.|-.++. |.+|..-|.|++|++.+... ...+. .|...|+.+.--|+ ..+.+-+.|+
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---LPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCcc---chhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 5567788889999999999988775 88999999999999987633 23344 57778999998887 5788899999
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEec-----CCC----eEEEEeCCC-cEEEEeCCCCeeEeec----cCccccEE
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFL-----DGG----GIFAGMTDK-SICLWDLDGRELESWK----GQKTLRIS 405 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~sg~~dg-~i~iwd~~~~~~~~~~----~~~~~~v~ 405 (581)
.+.+|++.-+..+..-. -.+.++.|.+ +++ .++.-+... .+.+-|.......... ....+.+.
T Consensus 78 ~L~lw~ia~s~~i~i~S---i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHS---IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEEee---eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 99999998765443222 2233333322 111 111111100 1122222111111111 12223455
Q ss_pred EEEEee-CCC--EEEEEEcCCeEEEEECCCCe------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 406 DMAITD-DGK--RIISICREAAILLLDREANF------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 406 ~i~~~~-~~~--~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
+..+.- ++. .+++|..+|.+.+||+.++. .....|..++.++.+.+....=++++.+..+..|++
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeee
Confidence 555432 232 56778899999999999863 233467889999999987666677888888999988
Q ss_pred cCCCc--eeE-EEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEE
Q 008011 471 ESDPK--LVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 471 ~~~~~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s 547 (581)
..... .+. ........+..++. -||++.+|+++.|+.|+||+.++..++..++-|.+.|++++|+|+. .++|+
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrI---RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lmAa 310 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRI---RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELMAA 310 (323)
T ss_pred ccccCcccccceEEecCCCccceEE---ccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chhhh
Confidence 65311 111 11111222222332 7899999999999999999999999999999999999999999997 59999
Q ss_pred EECCCcEEEEcC
Q 008011 548 ASDDRTIRIWGL 559 (581)
Q Consensus 548 ~s~Dg~I~iW~~ 559 (581)
+|.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.3e-20 Score=176.49 Aligned_cols=261 Identities=12% Similarity=0.143 Sum_probs=203.2
Q ss_pred cEEEEEEcCCCC-EEEEEECCCeEEEEEcccC-CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 274 EVWFLQFSHDGK-YLASSSKDQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
.|.++.|+.... .+|+.+.|..+++|.-... .++.......+. .-.|++......++++|+..++|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 388999988764 3344467888999976522 123333333333 334555555568999999999999999998888
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc-cccEEEEEEeeCCCE-EEEEEcCCeEEEEE
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKR-IISICREAAILLLD 429 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~-l~~~~~dg~i~i~d 429 (581)
.+.++.|...|+++.|.....+|++++..|.|.+..+.++......... ...|.-+.|++..+. |.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 8899999999999999999999999999999999999876655544444 445678999998765 56788999999999
Q ss_pred CCCCe---eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE
Q 008011 430 REANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
+.... .....|..+...++|+| +..+|++.+.|..|.+||.... .....+..... +..+.++++|.+|++|
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~P----lstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHP----LSTVAFSECGTYLCAG 268 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCC----cceeeecCCceEEEee
Confidence 98876 33346888999999999 5567788899999999999876 44444433221 3445559999999999
Q ss_pred eCCCcEEEEeCCC-CceEEEeccCcCCEEEEEEcCCC
Q 008011 506 SEDSQVYIWHRYT-GELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 506 s~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~~p~~ 541 (581)
+..|.|+.||++. ..++..+..|...|++++|-|..
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999875 46788999999999999998853
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=165.91 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=181.1
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 399 (581)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|++++.|..|.+||+..+.+......
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 68999999999999999999999999999998889999999999999999999999999999999999987665444433
Q ss_pred ccccEEEEEEeeCCCEEE-EEEcCCeEEEEECCCCeeeeEecC------CceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 400 KTLRISDMAITDDGKRII-SICREAAILLLDREANFERWIEEE------EVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 400 ~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
. .+|....|+|.....+ +.-.+..-.+.++........... ....+..|.+.|+++++|...|.+.+||..+
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 3 4899999999654333 333333344555554443333221 1223346899999999999999999999998
Q ss_pred CCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC-------Cce--EEEecc--CcCCEEEEEEcCCC
Q 008011 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-------GEL--VLALAG--HSGSVNCVSWNPAN 541 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-------~~~--~~~l~~--h~~~v~~l~~~p~~ 541 (581)
. +++..++... ...+....++..|++++.-+.|..|+.|++.. +++ .+.+.. ..-.-++++|+.+|
T Consensus 185 ~-e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 185 L-ECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred h-eeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 7 7777776554 23455555588999999999999999999752 111 122211 12234578899999
Q ss_pred CcEEEEEECCCcEEEEcCCCcCccc
Q 008011 542 LHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
..++++...-..++||.-..|.+..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred cEEEeccccceeEEEEecCCcceee
Confidence 5444444456789999998888753
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-20 Score=176.30 Aligned_cols=258 Identities=12% Similarity=0.186 Sum_probs=203.2
Q ss_pred HHHHccccceecc--CCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe
Q 008011 229 ALDVQRDSCLFHN--TSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ 306 (581)
Q Consensus 229 ~~~~q~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~ 306 (581)
.+.||+...+... ..+..+.+|... +. ....+.+..+.+. .-.|++......|+++|+..+.|+|||+...
T Consensus 39 s~~w~~~n~lvvas~~gdk~~~~~~K~--g~-~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-- 111 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASMAGDKVMRIKEKD--GK-TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-- 111 (673)
T ss_pred eeeccccceEEEeecCCceeEEEeccc--CC-CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH--
Confidence 4567776644433 345556666432 21 1111223333333 3345554445589999999999999999843
Q ss_pred eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEecCCCe-EEEEeCCCcEE
Q 008011 307 VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGG-IFAGMTDKSIC 384 (581)
Q Consensus 307 ~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~sg~~dg~i~ 384 (581)
.+.+.+++|...|+++.++..+.+||+++..|.|.|..+.++.....|... ...|.-+.|++..+. |.+++.+|.|.
T Consensus 112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 466778999999999999999999999999999999999999888888766 445668899997665 55788999999
Q ss_pred EEeCCCC-eeEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEee
Q 008011 385 LWDLDGR-ELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 385 iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+||+.+. ....+...|..+...|+|+|.. ..|++.+.|..|.+||.+... ...+....+...++|+++|.+|++|..
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence 9999764 4567778888899999999965 467888999999999999877 666777889999999999999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008011 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
.|.|..||++..+.++..+..|...+..+.+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999899999999998866665554
No 160
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=160.27 Aligned_cols=273 Identities=15% Similarity=0.234 Sum_probs=202.4
Q ss_pred ccceeccCCCCCceeeccCCCC---cccccccce-----eeeccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCC
Q 008011 235 DSCLFHNTSDSDFSLYSDHQCG---RNRIPSQTL-----QILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDG 305 (581)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-----~~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~ 305 (581)
.+.++....++.+.+|+-.... ...+..+.. +--.+|.-.|..+.|-| |..++.+++.|.+++|||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 3456788888888888644332 111111111 12347888999999999 66689999999999999997653
Q ss_pred eeeEEEeecCCCCCeEEEEeCC---CCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCC
Q 008011 306 QVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDK 381 (581)
Q Consensus 306 ~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg 381 (581)
....++ ..+.|..-+|+| ...++|+|..+-.|++-|+.+|.+.+++.+|...|.++.|+|...+ |++|+.||
T Consensus 136 ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 136 ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred ---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 223333 456688888888 3457888888899999999999999999999999999999997766 67899999
Q ss_pred cEEEEeCCC--CeeE-------------eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEec-----C
Q 008011 382 SICLWDLDG--RELE-------------SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE-----E 441 (581)
Q Consensus 382 ~i~iwd~~~--~~~~-------------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~ 441 (581)
.|++||++. +... .....|.+.+..++|+.++.++++++.|..+++|+..++....... +
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccc
Confidence 999999963 2221 1234556789999999999999999999999999998876222111 1
Q ss_pred ---CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 442 ---EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 442 ---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+.-..+. +-+...++.--.++.+.++++-.+ ..++.+..|-. .+.++++.++=....+|..|+.|+.|-.
T Consensus 292 ~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k---~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 292 QTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLK---RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEEEeeecccc---eeeEEeecCchhhhhccccCCccccccc
Confidence 1111122 333444444445688999998887 78888888843 3667777888888999999999999975
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.2e-20 Score=178.02 Aligned_cols=243 Identities=15% Similarity=0.226 Sum_probs=190.2
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCe-EEEEeCCCcEEEEe
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWD 387 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~iwd 387 (581)
+...+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.|++++... ..|.|++|+|.+.. +++...+..+.+.+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 44567899999999999999999999999999999999999999988554 48999999996654 33333333344433
Q ss_pred CCCC-----------------------ee--------------EeeccCccccEEEEEEeeCCCEEEEEEcC---CeEEE
Q 008011 388 LDGR-----------------------EL--------------ESWKGQKTLRISDMAITDDGKRIISICRE---AAILL 427 (581)
Q Consensus 388 ~~~~-----------------------~~--------------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~i 427 (581)
..-+ .+ ......+...|+.+.|+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2100 00 11222344578999999999999998764 46888
Q ss_pred EECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE
Q 008011 428 LDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG 505 (581)
Q Consensus 428 ~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg 505 (581)
.++.... .-+....+.+.++.|+|...+|++++ ...|+|||+... .+++.+...... +.....+|.|.-|+.|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq-elvKkL~tg~kw---iS~msihp~GDnli~g 625 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ-ELVKKLLTGSKW---ISSMSIHPNGDNLILG 625 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH-HHHHHHhcCCee---eeeeeecCCCCeEEEe
Confidence 8887766 44456778899999999999999987 678999999875 666655443333 4555558999999999
Q ss_pred eCCCcEEEEeCCC-CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 506 SEDSQVYIWHRYT-GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 506 s~dg~I~iwd~~~-~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+.|+.+..||+.- .++..++.-|...+++|+||+.-+ ++++|++||++.|+-
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 9999999999874 467788999999999999999984 999999999999984
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.2e-19 Score=158.96 Aligned_cols=265 Identities=17% Similarity=0.252 Sum_probs=201.9
Q ss_pred CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCC-------CcEEEEECCCC---------cEEEE
Q 008011 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQE-------EAIRRWDVNSG---------ECLHV 354 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~d-------g~i~vwd~~~~---------~~~~~ 354 (581)
.|+.|.+.+++..+..-..+.+..|.+.|+.++-+|- ...|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4677888888766554455677889999999999994 4566666442 24789988643 22333
Q ss_pred Ee-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-Ee-----eccCccccEEEEEEee--CCCEEEEEEcCCeE
Q 008011 355 YE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ES-----WKGQKTLRISDMAITD--DGKRIISICREAAI 425 (581)
Q Consensus 355 ~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~-----~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i 425 (581)
+. .+-+.+.|+.|.|++..+++-. |..|.+|++..... .. ....+....++-+|+| +|+.+++ ..|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcE
Confidence 33 3445899999999999988876 88999999965332 11 1112334678888998 5655554 578999
Q ss_pred EEEECCCCee---eeEecCCceEEEEECCCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcE
Q 008011 426 LLLDREANFE---RWIEEEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~~---~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
..||+++... ....|...+..+.|+|+.. +|++|+.||.|+|||.+....++..+.+|...++.+++- +....+
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--CccceE
Confidence 9999998772 3346778899999999766 577788899999999999889999999999987777654 456789
Q ss_pred EEEEeCCCcEEEEeCCCC-----------------------------ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCC
Q 008011 502 IASGSEDSQVYIWHRYTG-----------------------------ELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
|.+|+.|..|.+|...+- ..+.++..|+..|++++|+.-.|.++|+-+.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 999999999999964321 124467789999999999999999999999999
Q ss_pred cEEEEcCC
Q 008011 553 TIRIWGLD 560 (581)
Q Consensus 553 ~I~iW~~~ 560 (581)
.+.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 99987664
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.7e-19 Score=166.25 Aligned_cols=212 Identities=20% Similarity=0.293 Sum_probs=174.6
Q ss_pred eeccccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCe----eeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCc
Q 008011 267 ILEAHSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ----VSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEA 340 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~ 340 (581)
.+.||+++|..++|+| +...+|+||.|.+|.||++..+.. ......+.+|...|..++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 667899999999999999975532 2456778999999999999994 468999999999
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc-cccEEEEEEeeCCCEEEEE
Q 008011 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISI 419 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~ 419 (581)
|.+||+.+|+.+.++. |..-|+++.|+.||.+|++++.|..|+|||.+++++......| ......+.|-.+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998887 9999999999999999999999999999999998887766433 3456677788888855555
Q ss_pred E---cCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEE
Q 008011 420 C---REAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 420 ~---~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 479 (581)
. .+..+.+||..+.. .......+.|.---|.+|.+.++.++. |+.|+.|.+......+.-
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 3 46789999988765 344555666777778999888777665 899999999886433433
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=170.13 Aligned_cols=251 Identities=12% Similarity=0.214 Sum_probs=195.3
Q ss_pred EeecCCCCCeEEEEeCCCC--CeEEEeeCCCcEEEEECCCC----cEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcE
Q 008011 311 HRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRWDVNSG----ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSI 383 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i 383 (581)
.....+.++|++++|+|.. +++|+|+.-|+|-+||+.+. .-+..+..|..+|.++.|+| +...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4456688999999999954 57889999999999999532 34567788999999999999 56789999999999
Q ss_pred EEEeCCCCeeEeeccC--ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCC-CCEEE
Q 008011 384 CLWDLDGRELESWKGQ--KTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLL 457 (581)
Q Consensus 384 ~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~ 457 (581)
++-|+++.....+... ....+..+.|+.+...++.++.-|...+||.++.. ..+..|...|++++++|- ..+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999987665554443 34467888899888889999988899999999876 445567779999999995 45788
Q ss_pred EEeeCCcEEEEEecCCCc---eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC----CCceEEEeccCcC
Q 008011 458 VNLINQEIHLWSIESDPK---LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY----TGELVLALAGHSG 530 (581)
Q Consensus 458 ~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~----~~~~~~~l~~h~~ 530 (581)
+++.|++.+|||++.... +.-....|.. .+.+++++|.+-.|+|.+.|..|+|||.. ...+...+. |..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRR---SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccc---eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 999999999999986421 1122223433 46677779988889999999999999973 333444443 321
Q ss_pred ------CEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 531 ------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 531 ------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
......|.|+. .++++|-.-..|-|+|-+.+++..
T Consensus 416 ~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred cccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCEEee
Confidence 23456799998 799999999999999998888443
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=164.12 Aligned_cols=270 Identities=15% Similarity=0.236 Sum_probs=199.3
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEEEEECCCCcEEEEEe--cCC-
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYE--KTG- 359 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~- 359 (581)
..+|++-..|.|++||..++ .....++++...++.+.|.. ....+.+|+.||+|++||+++......+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888889999999999886 45577888888888999977 45789999999999999999865544433 333
Q ss_pred CeEEEEEEecCCCeEEEEe----CCCcEEEEeCCCCe--eEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEECCC
Q 008011 360 VGLISCGWFLDGGGIFAGM----TDKSICLWDLDGRE--LESWKGQKTLRISDMAITDD-GKRIISICREAAILLLDREA 432 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~----~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+..+++-.-.++.+++|+ .+-.|.+||++..+ +..+...|...|+++.|+|. .+.|++|+.||-|.+||++.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 4556666555666777765 36689999997643 56677788889999999995 56899999999999999987
Q ss_pred Ce-----eeeEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEecc----------ccceeEEEeeeCC
Q 008011 433 NF-----ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGH----------KRARFVIRSCFGG 496 (581)
Q Consensus 433 ~~-----~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~i~~~~~~ 496 (581)
.. ...+.+...|.++.|..++ +.+.+-+...+..+|++..+. ....+... ....+.|.... +
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~ 275 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHS-P 275 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeeccc-C
Confidence 65 4566788889999999877 457888889999999998873 33332221 12234444433 3
Q ss_pred CCCcEEEEEeC-CCcEEEEeCC---C---CceEEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 497 FEQAFIASGSE-DSQVYIWHRY---T---GELVLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 497 ~~~~~l~sgs~-dg~I~iwd~~---~---~~~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.++.+.+.++. -|...++-+. + .+.+..+.+ |...|.++.|...+ .++.|||.||.+.+|...
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEecC
Confidence 34444444443 5555555432 2 344566666 77788999998877 799999999999999953
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4e-20 Score=178.06 Aligned_cols=265 Identities=16% Similarity=0.225 Sum_probs=187.6
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcc-----cCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK-----EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
..++..|.+.|..++|.|....|++|+.||++.+|++. ....+..+.++.+|.++|.|++..+++.++++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34788899999999999999999999999999999993 2334678889999999999999999999999999999
Q ss_pred cEEEEECCCC----------cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc-ccEEEEE
Q 008011 340 AIRRWDVNSG----------ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~ 408 (581)
+|+.|++... .....+.+|...++.+++++....|++++.||+++.|+........+..... ....++.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence 9999965421 2345677999999999999999999999999999999986655422222111 1222333
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008011 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
+.... ++....+.....+++.... . ...+.++.-... .+.. ...
T Consensus 447 ~~ss~--~a~~~~s~~~~~~~~~~~e--------v------------------~s~~~~~~s~~~-------~~~~-~~~ 490 (577)
T KOG0642|consen 447 RTSSR--PAHSLASFRFGYTSIDDME--------V------------------VSDLLIFESSAS-------PGPR-RYP 490 (577)
T ss_pred eccch--hHhhhhhcccccccchhhh--------h------------------hhheeeccccCC-------Cccc-ccC
Confidence 22111 1100111111111111100 0 000111111000 0000 001
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
.+..+.+.|.+.+.+++.+|+.|+++|..+++++.....|...++++++.|+|+ +|++++.||.|++|.+....+..
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheee
Confidence 122223377888999999999999999999999999999999999999999995 99999999999999997666543
No 167
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=172.37 Aligned_cols=206 Identities=19% Similarity=0.301 Sum_probs=156.3
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
-+.|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+ .....-.+|...|.++.|-| ++..+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 45788999999999999999999999999999999987432 23334579999999999999 667899999999999
Q ss_pred EEECCC----------CcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEe--------ec--cCcc
Q 008011 343 RWDVNS----------GECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELES--------WK--GQKT 401 (581)
Q Consensus 343 vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~--------~~--~~~~ 401 (581)
++|+.. .+....+..|...|..++-.|++ ..+.+++.||+|+-+|++...... .. ...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999974 23445566777888888888888 678899999999999997522110 00 1111
Q ss_pred ccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe-------------------eeeE--ec--------C---CceEEEE
Q 008011 402 LRISDMAITDDG-KRIISICREAAILLLDREANF-------------------ERWI--EE--------E---EVITSFS 448 (581)
Q Consensus 402 ~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~-------------------~~~~--~~--------~---~~i~~~~ 448 (581)
....|+.++|.. .+|++|+.|...++||.+... ...+ .| . ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356788999864 578899999999999943211 0000 00 0 1256688
Q ss_pred ECCCCCEEEEEeeCCcEEEEEecC
Q 008011 449 LSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 449 ~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|+|+|.-|++.-....|+++|+..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecC
Confidence 999999999888788899998853
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=4.5e-19 Score=162.61 Aligned_cols=244 Identities=17% Similarity=0.194 Sum_probs=188.3
Q ss_pred EeecCCCCCeEEEEeCCCC--CeEEEeeCCCcEEEEECCC----------------CcEEEEEecCCCeEEEEEEec-CC
Q 008011 311 HRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRWDVNS----------------GECLHVYEKTGVGLISCGWFL-DG 371 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~ 371 (581)
....+|.+.++.+.-++-+ .+.++-+..|.|.|||+.. .+++.++.+|...=+.++|+| ..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445677778877777644 4566667789999999752 246778889988889999999 33
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeEe---eccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe----eeeEecCCc
Q 008011 372 GGIFAGMTDKSICLWDLDGRELES---WKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF----ERWIEEEEV 443 (581)
Q Consensus 372 ~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~ 443 (581)
..|++|..-+.|++|...++.... -...|...|.+++|+|.. ..|++++.||+|+|||++.+. .....|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 458889888999999987654322 123367789999999965 578899999999999999874 455788999
Q ss_pred eEEEEECCCCCEEEEEeeCCcEEEEEecCC--CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCce
Q 008011 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESD--PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~ 521 (581)
|+.+.|+.+..+|++|+.||+++|||++.- .+++..|+-|..+++.+.+. +.+...|++++.|.+|.+||+....-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~--p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH--PHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec--cccCceEEeccCCCcEEEEEeeccCC
Confidence 999999999889999999999999999863 36788999999986665543 23467889999999999999753211
Q ss_pred -----------E-----EEeccC--cCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 522 -----------V-----LALAGH--SGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 522 -----------~-----~~l~~h--~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+ +-+--| ...|..+.|++.-+.++++.+.||. .||
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 0 111224 3468899999998889999999984 444
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.3e-17 Score=168.43 Aligned_cols=290 Identities=29% Similarity=0.470 Sum_probs=227.2
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC-CCeEEEEe-CCCCC-eEEEeeC-CCcEE
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-KPVFTVSW-SPNDH-QLLTCGQ-EEAIR 342 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~-sp~~~-~l~s~~~-dg~i~ 342 (581)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998653 2344455533 36777777 88887 5555455 99999
Q ss_pred EEECCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCC-EEEEE
Q 008011 343 RWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-RIISI 419 (581)
Q Consensus 343 vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~ 419 (581)
+|+... ......+..|...|..+.|+|++..+++++. |+.+++|++...........+...+.+++|+|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999998 7888889999999999999999998888885 99999999987666655555777999999999998 55555
Q ss_pred EcCCeEEEEECCCCee---eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 420 CREAAILLLDREANFE---RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
+.|+.|++||...+.. ....+.... ...|+|++.++++++.++.+++|++.........+.+|... +..+.+.
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---VLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---EEEEEEC
Confidence 8999999998885552 233444443 33899999999999999999999998774434444455444 3333447
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEec--cCcCCEEEEEEcCCCCcEEEEE-ECCCcEEEEcCCCcC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTGELVLALA--GHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQIN 563 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~ 563 (581)
|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++ ..++.+ ..|+.+.+|++....
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCc
Confidence 778888889999999999998888777666 788889999994332 344444 688999999998876
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=4.7e-20 Score=166.15 Aligned_cols=243 Identities=17% Similarity=0.293 Sum_probs=185.3
Q ss_pred cccCcEEEEEEcCCC----CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEEE
Q 008011 270 AHSDEVWFLQFSHDG----KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRW 344 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g----~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vw 344 (581)
.|......++|+-|. .++|.|+.-|.|+|.|+.++ ++...+.+|...|+.+.++|+ .+++++++.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 477888889997643 38999999999999999876 667888999999999999995 4789999999999999
Q ss_pred ECCCCcEEEEEe---cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe--------------------------
Q 008011 345 DVNSGECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES-------------------------- 395 (581)
Q Consensus 345 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-------------------------- 395 (581)
++++..|+..+. +|...|.++.|++++.+|++++.|.++++|++...+...
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999998875 689999999999999999999999999999997322111
Q ss_pred --eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------------eeeEe----cCC--ceEEEEECCCCCE
Q 008011 396 --WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------------ERWIE----EEE--VITSFSLSKDNKY 455 (581)
Q Consensus 396 --~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~----~~~--~i~~~~~sp~~~~ 455 (581)
....|...|-|+.|- |+++++-+.++.|..|...... ..... ... .....+|+|-++.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 011122233344443 5688888999999999873211 01111 111 2344677888999
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
|+.|...|.|++||++........-..|......++-..++.++.+|+..++|+.|.-||..
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999998744333323333344455555669999999999999999999954
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.5e-18 Score=170.47 Aligned_cols=289 Identities=17% Similarity=0.242 Sum_probs=214.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEccc-CCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
.|.-.++|.++||+++++|+|..||.|.+|.--. ...-.....+.-|...|.+++|+++|.+|++||..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999997543 122234466778999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee-----------ccCccccEEEEEEeeCCCEEE
Q 008011 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-----------KGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-----------~~~~~~~v~~i~~~~~~~~l~ 417 (581)
++ .+-+..-..+|..+.++||+...+....|+.|.+........... ......-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 98 555667788999999999999999999999999988743222111 111233567788999888889
Q ss_pred EEEcCCeEEEEECCCCee--ee--E---------ecCCceEEEEECCCCCEEEEEee--------CC--cEEEEEecCCC
Q 008011 418 SICREAAILLLDREANFE--RW--I---------EEEEVITSFSLSKDNKYLLVNLI--------NQ--EIHLWSIESDP 474 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~~--~~--~---------~~~~~i~~~~~sp~~~~l~~~~~--------d~--~i~iwd~~~~~ 474 (581)
..+..|.|.+||+-+... .+ . .+...++.++.+-.|.++++.-. || .+++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 999999999999987651 11 1 11234677888888999988643 33 57889876542
Q ss_pred c---eeEEEeccccceeEEEeeeCCCCCc-EEEEEeCCCcEEEEeCCCC----------ceEEEeccCcCCEEEEEEcCC
Q 008011 475 K---LVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTG----------ELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 475 ~---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~----------~~~~~l~~h~~~v~~l~~~p~ 540 (581)
+ +........+..... .++.++... ..++++.||.++||-+... .+...-.-|..++++++|+.|
T Consensus 442 kt~~L~T~I~~PH~~~~va-t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVA-TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCceeEE-EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 233333333333333 344344444 8999999999999987322 222222237889999999999
Q ss_pred CCcEEEEEECCCcEEEEcCCCc
Q 008011 541 NLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
| -+++++.|++|.+||..+.
T Consensus 521 G--slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 G--SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred C--cEEEEecCCEEEEecCCCh
Confidence 9 4667788999999999983
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=164.30 Aligned_cols=288 Identities=30% Similarity=0.521 Sum_probs=225.0
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEEC-CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC-eEEEeeCCC
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSK-DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEE 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg 339 (581)
......+..|...|.+++|+|++.++++++. |+.+++|+.... .....+.+|...|.+++|+|++. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 4567788999999999999999999998885 999999999864 45566777999999999999998 555659999
Q ss_pred cEEEEECCCCcEEE-EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe--eEeeccCccccEEEEEEeeCCCEE
Q 008011 340 AIRRWDVNSGECLH-VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 340 ~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
.|++||...+.... .+..|.... ...|++++..+++++.|+.+++|++.... .... ..+...+.++.+.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEE
Confidence 99999999888887 677777665 44899999888999999999999997544 2333 4556789999999999999
Q ss_pred EEEEcCCeEEEEECCCCe--eee--EecCCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 417 ISICREAAILLLDREANF--ERW--IEEEEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~--~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
++++.|+.+.+||..+.. ... ..+...+..+.+.+++..++.+ ..|+.+.+|++.... .......... ...
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~---~~~ 375 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN---VLS 375 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce---EEE
Confidence 889999899999888776 222 2556678999994343566665 578899999998874 2222222221 222
Q ss_pred eeeCCCCCcEEEE-EeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 492 SCFGGFEQAFIAS-GSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 492 ~~~~~~~~~~l~s-gs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+ .++ ..+.. +..++.+.+|+............+...+....+.+++ ..+++++.++.+++|+...
T Consensus 376 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 376 VSF-SPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEE-CCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence 233 333 44444 7889999999999888877776554788999999998 6888899999999999987
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=6e-17 Score=160.74 Aligned_cols=268 Identities=13% Similarity=0.151 Sum_probs=180.4
Q ss_pred EEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee-CCCcEEEEECC-CCcE--EEEEecCCCeEE
Q 008011 288 ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEAIRRWDVN-SGEC--LHVYEKTGVGLI 363 (581)
Q Consensus 288 asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~i~vwd~~-~~~~--~~~~~~~~~~v~ 363 (581)
++...++.|.+|++.+.+.+.....+. +.+....++++|++++|++++ .++.|.+|++. +++. ..... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 344678999999997555555666654 345577899999999987764 47889999997 3433 22222 233467
Q ss_pred EEEEecCCCeEEEEeC-CCcEEEEeCCC-Cee---EeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCe-ee
Q 008011 364 SCGWFLDGGGIFAGMT-DKSICLWDLDG-REL---ESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREANF-ER 436 (581)
Q Consensus 364 ~~~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~ 436 (581)
.++++|+++.+++++. ++.|.+|+++. +.. ..... .......++++|+++++++++ .++.|.+||+.+.. ..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999999888764 88999999963 211 11111 223567788999999886655 56999999997632 11
Q ss_pred -------eEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC---ceeEEEeccc----cceeEEEeeeCCCCCcE
Q 008011 437 -------WIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP---KLVSRYKGHK----RARFVIRSCFGGFEQAF 501 (581)
Q Consensus 437 -------~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~---~~~~~~~~~~----~~~~~i~~~~~~~~~~~ 501 (581)
..........+.|+|++++++++.. ++.|.+|+++... ..+..+.... ...+...+ .++|++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i-~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI-HITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE-EECCCCCE
Confidence 1123445678999999999988876 8999999997421 2233332211 11122223 33899999
Q ss_pred EEEEeC-CCcEEEEeCCCCceEEEeccC---cCCEEEEEEcCCCCcEEEEEE-CCCcEEEEcCC
Q 008011 502 IASGSE-DSQVYIWHRYTGELVLALAGH---SGSVNCVSWNPANLHMLASAS-DDRTIRIWGLD 560 (581)
Q Consensus 502 l~sgs~-dg~I~iwd~~~~~~~~~l~~h---~~~v~~l~~~p~~~~~l~s~s-~Dg~I~iW~~~ 560 (581)
++++.. ++.|.+|++........+.++ ......+.++|+|. +|++++ .+++|.+|+++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~-~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK-YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC-EEEEEEccCCcEEEEEEc
Confidence 998865 789999998654322222222 12456899999995 555544 58999999885
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=3.2e-18 Score=158.66 Aligned_cols=280 Identities=16% Similarity=0.249 Sum_probs=198.9
Q ss_pred eeccCCCCCceeeccCCCCccc--ccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcc--------c----
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNR--IPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVK--------E---- 303 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~--------~---- 303 (581)
+.....|..+.+|.-....... ..-..+..|..|..+|+++.|+|+|.+||+|+.+|.|.+|... +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 3456777888888644332222 3445677899999999999999999999999999999999876 2
Q ss_pred -CCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 304 -DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 304 -~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
...+...+.+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|..
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence 2346677888999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred EEEEeCCCCeeEeecc-------------------Cc----cccEEEEEEeeCCCEEEEEEc----C-----CeEEEEEC
Q 008011 383 ICLWDLDGRELESWKG-------------------QK----TLRISDMAITDDGKRIISICR----E-----AAILLLDR 430 (581)
Q Consensus 383 i~iwd~~~~~~~~~~~-------------------~~----~~~v~~i~~~~~~~~l~~~~~----d-----g~i~i~d~ 430 (581)
.+.+.+.......... .| ..-...++|+|+|..+++... . +..++|+-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr 268 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR 268 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc
Confidence 7776664322111100 01 012456789999998887542 2 23345544
Q ss_pred CCCe---eeeEecCCceEEEEECC------------------CCCEEEEEeeCCcEEEEEecCCCceeEE-Eecccccee
Q 008011 431 EANF---ERWIEEEEVITSFSLSK------------------DNKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKRARF 488 (581)
Q Consensus 431 ~~~~---~~~~~~~~~i~~~~~sp------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 488 (581)
.... ........+...+.++| -+-.+++++ .+.+++||.++. .++.. -.-|-..
T Consensus 269 k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~-~P~~~v~nihy~~-- 344 (434)
T KOG1009|consen 269 KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTL-EPLAVVDNIHYSA-- 344 (434)
T ss_pred ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccc-cceEEEeeeeeee--
Confidence 3222 12222222333333332 233344544 678999999886 33333 3334333
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
++-..|+++|.+++..|.||...+-.++..++-
T Consensus 345 -iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 345 -ITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -ecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 444556999999999999998887776665543
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3e-18 Score=175.88 Aligned_cols=289 Identities=18% Similarity=0.238 Sum_probs=204.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEeeCCCcEEEEECC-C-
Q 008011 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCGQEEAIRRWDVN-S- 348 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~vwd~~-~- 348 (581)
..-..+.|+|=...++++...-.|+|||.+.+..+.-...-......|+.+.+-. |..++++|+.||.|+||+-- +
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3455677888888899988778899999987744322222223345688888876 56789999999999999742 2
Q ss_pred ---CcEEEEEe-------cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee-ccCccccEEEEEEe-eCCCEE
Q 008011 349 ---GECLHVYE-------KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISDMAIT-DDGKRI 416 (581)
Q Consensus 349 ---~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~-~~~~~l 416 (581)
.+.+..+. +..+.-.-+.|.....+|++++.-..|+|||.....+..- .......++++.-+ ..|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 22222221 1111224467888788888888889999999976554433 33333456666544 347999
Q ss_pred EEEEcCCeEEEEECCCCe-----eeeEecCCc--eEEEEECCCCCE-EEEEeeCCcEEEEEecCC-CceeEEEeccccce
Q 008011 417 ISICREAAILLLDREANF-----ERWIEEEEV--ITSFSLSKDNKY-LLVNLINQEIHLWSIESD-PKLVSRYKGHKRAR 487 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~-----~~~~~~~~~--i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~ 487 (581)
++|..||.|++||.+... ..+..|... |..+.+.+.|-- |++|+.+|.|++||++.. .........|....
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999988654 445566666 999999986654 999999999999999984 12222223333212
Q ss_pred eEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-------cCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-------SGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-------~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
..+++.+.+++...+|+|+. +.|+||++. |+.+..++.+ .+.+.|++|||.. -++|.|+.|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecC
Confidence 23556666888899999998 999999974 5555444432 3578999999998 589999999999999987
Q ss_pred CcCc
Q 008011 561 QINM 564 (581)
Q Consensus 561 ~~~~ 564 (581)
+..+
T Consensus 1382 k~~~ 1385 (1387)
T KOG1517|consen 1382 KPRL 1385 (1387)
T ss_pred CcCC
Confidence 6654
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=6.4e-18 Score=152.09 Aligned_cols=252 Identities=19% Similarity=0.335 Sum_probs=188.2
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCc------------EEEEEe-cCCCeEEEEEEe-------cCCCeEEEEeC
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE------------CLHVYE-KTGVGLISCGWF-------LDGGGIFAGMT 379 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~l~sg~~ 379 (581)
...+.|+|||..|++-+.|..+.+|++...- ....+. .....|...+|. |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4578999999999999999999999975210 111111 234578888887 57788999999
Q ss_pred CCcEEEEeCCCCeeEeeccCc--c---ccEEEEEEeeCCCEEEEEEcCCeEEEEEC-CCCe----ee-----eEecCCce
Q 008011 380 DKSICLWDLDGRELESWKGQK--T---LRISDMAITDDGKRIISICREAAILLLDR-EANF----ER-----WIEEEEVI 444 (581)
Q Consensus 380 dg~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~----~~-----~~~~~~~i 444 (581)
+.-|.+||.-++++......- . ....+++|+|||..|++| ....|+++|+ +.+. .. .....+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 999999999887776544321 1 245689999999999876 4678999999 4443 11 22336778
Q ss_pred EEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC-CCcEEEEeCCC-Cce
Q 008011 445 TSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRYT-GEL 521 (581)
Q Consensus 445 ~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~~-~~~ 521 (581)
.+++|+| +.+.+++++....+-||.-... .+...+.+|.+.+..+. +.++|+.+++|+. |-.|.+||++. +.+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~---~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQ---WCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEE---eccCcCeecccccCCCeEEEEeehhccch
Confidence 9999999 5558999999999999987776 78888889999855543 3789999999887 56899999875 567
Q ss_pred EEEeccCcC-CEEE--EEEcCCCCcEEEEEECCCcEEEEcCCC-cCcc-----cccCCCceEEec
Q 008011 522 VLALAGHSG-SVNC--VSWNPANLHMLASASDDRTIRIWGLDQ-INMK-----HRDQSNGIVHHC 577 (581)
Q Consensus 522 ~~~l~~h~~-~v~~--l~~~p~~~~~l~s~s~Dg~I~iW~~~~-~~~~-----~~~~~~~~~~~~ 577 (581)
+..+..|.+ .=.. ....|++ .+|++|+.||.|++||+++ ++.. +.+-.|++..+|
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred hhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCcccccccccccccceecCc
Confidence 778888865 2223 3456888 7999999999999999988 4422 334466666655
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.3e-17 Score=150.13 Aligned_cols=208 Identities=12% Similarity=0.157 Sum_probs=173.9
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+.--..+|+|.+|++|+..+|.+.....|.||.....+.++..+++..|...|++++|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445679999999999999999999999999999877668899999999999999999999999999999999999998
Q ss_pred CC-C--cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee----EeeccCccccEEEEEEeeCCCEEEEE
Q 008011 347 NS-G--ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 347 ~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
.. + +....+..+...++++.|+|.++.|++|+....|.+|-.+...- +.+.......|.++.|+|++-.+++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 3 34556667888999999999999999999999999998864331 23344445679999999999999999
Q ss_pred EcCCeEEEEECC-----CCe---------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC
Q 008011 420 CREAAILLLDRE-----ANF---------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 420 ~~dg~i~i~d~~-----~~~---------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
+.|+..+++..- ... .......+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999988642 110 1112456789999999999999999999999999987764
No 178
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-19 Score=187.38 Aligned_cols=246 Identities=16% Similarity=0.244 Sum_probs=191.6
Q ss_pred cCcEEEEEEcCCCCE----EEEEECCCeEEEEEccc---CCeeeEEEeecCCCCCeEEEEeCCCC-CeEEEeeCCCcEEE
Q 008011 272 SDEVWFLQFSHDGKY----LASSSKDQSAIIWEVKE---DGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRR 343 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~----lasgs~dg~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~v 343 (581)
....+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999987765 88899999999999875 45556677788999999999999955 59999999999999
Q ss_pred EECCCCcEEEEEe--cCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeE-eeccCc-cccEEEEEEeeCCC-EEE
Q 008011 344 WDVNSGECLHVYE--KTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELE-SWKGQK-TLRISDMAITDDGK-RII 417 (581)
Q Consensus 344 wd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~-~l~ 417 (581)
||+..-+.-..+. .....|.+++|+..- ..|++++.+|.+.|||++..+.. .+.... ...+..++|+|+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755433331 245689999998744 45778888999999999876433 222222 23588999999875 455
Q ss_pred EEEcC---CeEEEEECCCCe---eeeEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEE
Q 008011 418 SICRE---AAILLLDREANF---ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 418 ~~~~d---g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
+++.| -.|.+||++... ..+..|...|.++.|++.+ .++++++.|+.|.+|+..++ +.+..+.......+.+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv 302 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDV 302 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeee
Confidence 55544 369999998765 4456899999999999955 89999999999999999997 7788777755555555
Q ss_pred EeeeCCCCCcEEEEEeCCCcEEEEeCCCCc
Q 008011 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGE 520 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~ 520 (581)
.+| ..+-..+++++-||.|-||.+..+.
T Consensus 303 ~w~--pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWC--PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eec--CCCcchhhhheeccceeeeeeecCC
Confidence 444 4455689999999999999987654
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=7.7e-18 Score=155.44 Aligned_cols=208 Identities=13% Similarity=0.242 Sum_probs=163.6
Q ss_pred EeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCCC-------cEEEEEecCCCeEEEEEEecC-CCeEEEEeCCC
Q 008011 311 HRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG-------ECLHVYEKTGVGLISCGWFLD-GGGIFAGMTDK 381 (581)
Q Consensus 311 ~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg 381 (581)
..+.+|+++|..++|+| ++..||+|+.|.+|.||.+..+ +.+..+.+|...|--++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35679999999999999 6788999999999999998654 456788899999999999995 45788999999
Q ss_pred cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee--Eec-CCceEEEEECCCCCEEEE
Q 008011 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERW--IEE-EEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~~i~~~~~sp~~~~l~~ 458 (581)
+|.+||+.+++...... |...|.++.|+.||.++++++.|..|++||.+++.... ..| ......+.|-.++..+-+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999887655555 66799999999999999999999999999999988322 233 344667778888885555
Q ss_pred Eee---CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEE-EEeCCCcEEEEeCCCCce
Q 008011 459 NLI---NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA-SGSEDSQVYIWHRYTGEL 521 (581)
Q Consensus 459 ~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-sgs~dg~I~iwd~~~~~~ 521 (581)
|.. +..+.+||..+..+++....-.... .+-.-|+.++.+.++ +|-.|+.|+.|.+.+..+
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 543 6789999988765654443333322 244556688877765 555699999999877653
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=7.1e-18 Score=149.70 Aligned_cols=250 Identities=21% Similarity=0.312 Sum_probs=170.5
Q ss_pred cEEEEEEcC--C-CCEEEEEEC----CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC-----CeEEEeeCCCcE
Q 008011 274 EVWFLQFSH--D-GKYLASSSK----DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-----HQLLTCGQEEAI 341 (581)
Q Consensus 274 ~V~~l~~s~--~-g~~lasgs~----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----~~l~s~~~dg~i 341 (581)
.+.++.||. + +.+||.|+. .+.|.|-.+.....-.....-..|.-+++.+.|.|+. .+|||++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 567788873 3 347888873 4677777765322111122225799999999999976 3566654 379
Q ss_pred EEEECCCCc--E--EEE-----EecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCe---eEeeccCccccEEEEE
Q 008011 342 RRWDVNSGE--C--LHV-----YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE---LESWKGQKTLRISDMA 408 (581)
Q Consensus 342 ~vwd~~~~~--~--~~~-----~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~ 408 (581)
++|.+...+ . ... -..+..++++..|+. +.+++.+.+-|-+..|||++++. +++....|...|.+++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999987422 1 111 123467889999987 67788999999999999997652 3444444445555555
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008011 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
|...+. +.+++.+.||.+++||++......-.+........
T Consensus 204 f~~~s~---------------------------------------~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 204 FLKGSR---------------------------------------DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred eccCcc---------------------------------------ceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 554332 24455555566666665554333333333332334
Q ss_pred EEEeeeCCCCCcEEEEEeCCC-cEEEEeCCC-CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCc
Q 008011 489 VIRSCFGGFEQAFIASGSEDS-QVYIWHRYT-GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~-~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
.++..+...+-+++|+-..|. .|.|.|++. ..++..+.+|.+.|++++|.|..+..|+|||+|..+.|||+.+.-.
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 466666666778888877765 799999875 5678999999999999999999989999999999999999986544
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-17 Score=171.78 Aligned_cols=298 Identities=15% Similarity=0.165 Sum_probs=208.0
Q ss_pred cccccceeeeccccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccC----CeeeEEEeecCCCCCeEEEEeCCCCCeEE
Q 008011 259 RIPSQTLQILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLL 333 (581)
Q Consensus 259 ~~~~~~~~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~l~ 333 (581)
......+..+..|...|..++.++.. .+++|||.||+|++|+...- +......++......+.++...+.+..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 44556677888999999999988765 89999999999999998631 23344445555677899999999999999
Q ss_pred EeeCCCcEEEEECCCC--c-----EEEEEecC-CCeEEEE-EEec-CCC-eEEEEeCCCcEEEEeCCCCeeEe--eccCc
Q 008011 334 TCGQEEAIRRWDVNSG--E-----CLHVYEKT-GVGLISC-GWFL-DGG-GIFAGMTDKSICLWDLDGRELES--WKGQK 400 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~-~~~-~l~sg~~dg~i~iwd~~~~~~~~--~~~~~ 400 (581)
+++.||.|++.+++.. + +......+ .+.+.++ +|.. .+. .++.+...+.|..||++...... .....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998762 1 12222222 2334333 3332 233 68888889999999997643221 11222
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCC---CCEEEEEe--eCCcEEEEEecC
Q 008011 401 TLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD---NKYLLVNL--INQEIHLWSIES 472 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~---~~~l~~~~--~d~~i~iwd~~~ 472 (581)
.+.|++++.+|.++++++|+..|.+.+||++-+. ....++..++..+..+|- ....++++ ..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 3489999999999999999999999999999877 233345567777777663 34555444 477899999988
Q ss_pred CCceeEEEecc-----------------ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceE-------------
Q 008011 473 DPKLVSRYKGH-----------------KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV------------- 522 (581)
Q Consensus 473 ~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~------------- 522 (581)
+. ....+-.. +.....+.+++ ...+.++.+|+.|..|+.||....+..
T Consensus 1275 g~-~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1275 GL-RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred Cc-ceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCccccccc
Confidence 73 22222211 12222333333 445678999999999999996432110
Q ss_pred -----------------------------------EEe--------ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 523 -----------------------------------LAL--------AGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 523 -----------------------------------~~l--------~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1353 ~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1353 NSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 146778999987765556999999999999994
No 182
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.8e-18 Score=162.14 Aligned_cols=204 Identities=18% Similarity=0.255 Sum_probs=161.1
Q ss_pred eccccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEE
Q 008011 268 LEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd 345 (581)
-++|++.|.+++|+.+- +.||+||.|.+|++||+.++ ++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 34799999999998754 48999999999999999987 56677888999999999999 567899999999999999
Q ss_pred CCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCC-eeEeeccCccccEEEEEEeeCC-CEEEEEEcC
Q 008011 346 VNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGR-ELESWKGQKTLRISDMAITDDG-KRIISICRE 422 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d 422 (581)
.+........-...+.|-.++|.|.. ..++++..||+|+-+|++.. +..-....|..+|.++++++.- ..+++++.+
T Consensus 316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 98543333333445678899999854 45778889999999999864 5555566777899999999764 478889999
Q ss_pred CeEEEEECCCCeeeeE-e---cCCceEEEEECCCCC-EEEEEeeCCcEEEEEecCCC
Q 008011 423 AAILLLDREANFERWI-E---EEEVITSFSLSKDNK-YLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~-~---~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~ 474 (581)
+.|++|++........ . .-+...|+++.|+-. ++++|+..+.+++||+.+..
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9999999876552111 1 123367778888655 56667777889999998763
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.4e-16 Score=161.66 Aligned_cols=262 Identities=17% Similarity=0.233 Sum_probs=192.8
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCCCcE--EE----EEecCCCeEEEEE
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSGEC--LH----VYEKTGVGLISCG 366 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~ 366 (581)
+.+.||++..... +...+ .....|+|+.|+| +..+++.|+.+|.|.+||++.+.. .. ....|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~--Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT--PELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCC--ceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4799999986532 22222 3567899999999 567888889999999999987654 22 2236788999999
Q ss_pred EecCCCe--EEEEeCCCcEEEEeCCCCee------Eee------ccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECC
Q 008011 367 WFLDGGG--IFAGMTDKSICLWDLDGREL------ESW------KGQKTLRISDMAITD-DGKRIISICREAAILLLDRE 431 (581)
Q Consensus 367 ~~~~~~~--l~sg~~dg~i~iwd~~~~~~------~~~------~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~ 431 (581)
|..+... |++++.||.|..|+++.-.. ... .......+++++|.+ +...+++|+.+|.|..-+..
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 9875544 99999999999999863211 011 112234688899987 45678999999999885443
Q ss_pred CCe----------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCC-Cc
Q 008011 432 ANF----------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QA 500 (581)
Q Consensus 432 ~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 500 (581)
... .....|.++|.++.++|-+..++..+.|.+++||.......++..+..+...++.+ .|+|. ..
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v---aWSptrpa 455 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV---AWSPTRPA 455 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee---EEcCcCce
Confidence 322 24457889999999999776655555599999999884446666666666553333 33554 36
Q ss_pred EEEEEeCCCcEEEEeCCC--CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 501 FIASGSEDSQVYIWHRYT--GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~--~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.++++..||.|.+||+.. ..++.+...+....+.+.|++.| .+|+.|...|++++|++...
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence 788888999999999754 45566666667777888999989 79999999999999999643
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.6e-16 Score=136.37 Aligned_cols=270 Identities=16% Similarity=0.222 Sum_probs=195.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCeEEEEEcccC--------CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--------GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..|..-+++|.+++|+.|..+|.|.+..+.+- ++ ..+....+|.++|+.++|. +.+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 34666789999999999999999999988531 12 2334558999999999998 45777766 4999999
Q ss_pred ECCCCcE------EEEE--ec-----CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee
Q 008011 345 DVNSGEC------LHVY--EK-----TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD 411 (581)
Q Consensus 345 d~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 411 (581)
..+.... +... .. .--.|+++...|..+.++.++.|+.++.||++++.+......|...+.++....
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 8754321 1011 11 123578888888888888888999999999999999999999999999999877
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe-eeeEe-----------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008011 412 DGKRIISICREAAILLLDREANF-ERWIE-----------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-----------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
....+++|+.||++++||.++.+ ...+. ....|.+++. +..++++|+ ...+.+|.++.. ++...
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss-e~t~v 242 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS-ESTCV 242 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC-CceEE
Confidence 77789999999999999999987 22221 1234555555 456777655 778999999986 55555
Q ss_pred EeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+.-... +.. + ......++++++.+.|.-|.+ +|.+.......+...++..|+..--++|..++..+.+.|+
T Consensus 243 fpipa~-v~~--v---~F~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPIPAR-VHL--V---DFVDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eecccc-eeE--e---eeecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 543222 111 2 224567888888889999986 4666666666566677777765433466667777777775
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.3e-15 Score=151.07 Aligned_cols=272 Identities=11% Similarity=0.157 Sum_probs=177.0
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEE-CCCeEEEEEcccCCeeeEEEeecCC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGH 316 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h 316 (581)
++.+..+..+.+|+-.... ....++.+. +.+....++++|++++|++++ .++.|.+|++...+.+....... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g----~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEG----ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-L 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCC----ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-C
Confidence 3445567778888653211 112344444 345677899999999887664 57889999997444444333332 2
Q ss_pred CCCeEEEEeCCCCCeEEEeeC-CCcEEEEECCC-Cc---EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCC
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNS-GE---CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDG 390 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~ 390 (581)
.+....++|+|++++|++++. ++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+||+++
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 334678999999999888765 78999999964 32 222222 223466788999999987655 568999999975
Q ss_pred -CeeEe-----eccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCC--eeee---E-e------cCCceEEEEECC
Q 008011 391 -RELES-----WKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREAN--FERW---I-E------EEEVITSFSLSK 451 (581)
Q Consensus 391 -~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~---~-~------~~~~i~~~~~sp 451 (581)
+.+.. ...........++|+|++++++++.. ++.|.+|++... .... . . .......+.++|
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 32211 11112235678999999999988876 899999999742 2111 1 1 111234688999
Q ss_pred CCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC-CCcEEEEeCC
Q 008011 452 DNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRY 517 (581)
Q Consensus 452 ~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~ 517 (581)
++++++++.. ++.|.+|++........ +.++.......+...++++|++|++++. +++|.+|++.
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999865 68999999965432221 1111110001112234889999998776 8899999874
No 186
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.5e-16 Score=141.14 Aligned_cols=217 Identities=18% Similarity=0.342 Sum_probs=145.6
Q ss_pred ecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC----cEEEEEecCCCeEEEEEEec--CCCeEEEEeCCCcEEEE
Q 008011 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG----ECLHVYEKTGVGLISCGWFL--DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iw 386 (581)
..+|.+-|+++.|.+.|+.+|+|+.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4578899999999999999999999999999997543 46667789999999999976 57889999999999999
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECC--CCCEEEEEeeCCc
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSK--DNKYLLVNLINQE 464 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp--~~~~l~~~~~d~~ 464 (581)
.-..... ..+....+.+. ........|+.+.|.| -|-.|++++.||.
T Consensus 89 EE~~~~~---~~~~~~Wv~~t----------------------------tl~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 89 EEQEKSE---EAHGRRWVRRT----------------------------TLVDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred eeccccc---ccccceeEEEE----------------------------EeecCCcceeEEEecchhcceEEEEeccCcE
Confidence 7531110 00000011110 1112233455555555 3445555666666
Q ss_pred EEEEEecCCCce-----eEE-------EeccccceeEEEeeeCCCCCcEEEEEeCC-----CcEEEEeCCCC----ceEE
Q 008011 465 IHLWSIESDPKL-----VSR-------YKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTG----ELVL 523 (581)
Q Consensus 465 i~iwd~~~~~~~-----~~~-------~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~----~~~~ 523 (581)
++||+......+ ... ...+....+.+.++..-....+||.|+.+ +.++||....+ ..+.
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 666655432111 111 11233344445554333345678888876 57889975443 3466
Q ss_pred EeccCcCCEEEEEEcCCCC---cEEEEEECCCcEEEEcCCC
Q 008011 524 ALAGHSGSVNCVSWNPANL---HMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 524 ~l~~h~~~v~~l~~~p~~~---~~l~s~s~Dg~I~iW~~~~ 561 (581)
++.+|..+|++++|.|+-+ ++||+++.|| |+||.+..
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 7889999999999999743 6899999999 99999984
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=1.6e-18 Score=173.74 Aligned_cols=246 Identities=19% Similarity=0.267 Sum_probs=204.6
Q ss_pred eEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008011 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 387 (581)
+.++.+.+|.++|+|+.|...|.++++|+.|..++||..+++.++....+|.+.++.++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee------eeEecCCceEEEEECCCCCEEEEEee
Q 008011 388 LDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE------RWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
+..+.......+|.+.|++++|+|-. +.+.||++++||.+-... ........+.++.|...+..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999965 778999999999983221 12234466788888888999999999
Q ss_pred CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCC
Q 008011 462 NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 462 d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~ 541 (581)
|+.-..|.+... ..+... .+.....+....+.+++-.+..+.+|++.+|.+.+.+.+|...+..+.+||-+
T Consensus 337 d~ea~n~e~~~l-------~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 337 DGEARNHEFEQL-------AWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred CcccccchhhHh-------hhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 998888876432 011111 11111112223567778888899999999999999999999999999999999
Q ss_pred CcEEEEEECCCcEEEEcCCCcCccc
Q 008011 542 LHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+.+..+++.||...|||+-.+....
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcce
Confidence 8888899999999999998776543
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=8.1e-17 Score=148.37 Aligned_cols=251 Identities=13% Similarity=0.151 Sum_probs=191.8
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECC------CCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCC
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN------SGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~------~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++ +.+++.....| ...|.|++|...+..+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 345577899999999999999999999999999999985 34566655544 58999999999999999999999
Q ss_pred cEEEEeCCCCeeEeeccCc--cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCCceEEEEECC-CC
Q 008011 382 SICLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSK-DN 453 (581)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp-~~ 453 (581)
+|...|+++.+......+. .+.|..+..+|-.+.+++.+.++.|.+||.+... ...........++.|+| ..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999987765554433 3579999999999999999999999999998765 22223456678899999 45
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccc---eeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc-
Q 008011 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA---RFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS- 529 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~- 529 (581)
.+|++++..+.+-+||.+....++..+.+..+- ........|+|+|+.+.+--....-.+||+.+..+..--..|.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 678888889999999999876665554433221 1111233448888888887776667788887754432222232
Q ss_pred ------CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 530 ------GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 530 ------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..+.+++|..+- .++||+++-.|++|.+..
T Consensus 288 ~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPR 323 (609)
T ss_pred Ccceeeeeeeeeeeecce--eeeccCcccceEEEecCC
Confidence 356788888765 699999999999999864
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.8e-15 Score=152.44 Aligned_cols=295 Identities=14% Similarity=0.165 Sum_probs=213.1
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEE-EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLK-HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...+.+|.. -.++.+++.|.+.+..- +..+.+|+..+..+.... ..-..|...++|.++||+++++|++..||.|.+
T Consensus 154 ~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v 231 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV 231 (792)
T ss_pred hhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence 334444544 45788888888766665 456899998764321111 122357777999999999999999999999999
Q ss_pred EECCC----CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEE
Q 008011 344 WDVNS----GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 344 wd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
|.--. ......+.-|...|.+++|+++|.+|++|+..|.+.+|.+.++. .++.+.-..+|..+.++||+...+..
T Consensus 232 w~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 232 WRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred EeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE
Confidence 96322 12346677889999999999999999999999999999999888 66666667799999999999999999
Q ss_pred EcCCeEEEEECCCCe-eeeE------------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-----
Q 008011 420 CREAAILLLDREANF-ERWI------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK----- 481 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----- 481 (581)
..|+.|.+....+.. ...+ ...+-.+.++++|..+.++..+..+.|.+||+-+.... ..+.
T Consensus 311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n 389 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDEN 389 (792)
T ss_pred ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEeec
Confidence 999999999886554 1111 12344678899998888888999999999999887333 3332
Q ss_pred cccc---ceeEEEeeeCCCCCcEEEEEe--------CCC--cEEEEeCCCCce----EE-EeccCcCCEEEEEEcCCCCc
Q 008011 482 GHKR---ARFVIRSCFGGFEQAFIASGS--------EDS--QVYIWHRYTGEL----VL-ALAGHSGSVNCVSWNPANLH 543 (581)
Q Consensus 482 ~~~~---~~~~i~~~~~~~~~~~l~sgs--------~dg--~I~iwd~~~~~~----~~-~l~~h~~~v~~l~~~p~~~~ 543 (581)
.+.+ ....+...+.+..|++++|+- .|| .+++|....... .. ....|...+...++.+.-..
T Consensus 390 ~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs 469 (792)
T KOG1963|consen 390 YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS 469 (792)
T ss_pred ccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc
Confidence 1111 122334444466689998864 243 678897554332 22 22468777666666544333
Q ss_pred -EEEEEECCCcEEEEcCCCcC
Q 008011 544 -MLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 544 -~l~s~s~Dg~I~iW~~~~~~ 563 (581)
..+|+|.||.++||-+...+
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred ceeEEeccCCeEEEEEEeccc
Confidence 89999999999999995433
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.1e-16 Score=140.34 Aligned_cols=248 Identities=18% Similarity=0.285 Sum_probs=183.2
Q ss_pred eeeccccCcEEEEEEcCC-CCEEEEEECC-------CeEEEEEcccCCe------eeEEEeec-CCCCCeEEEEeCCCCC
Q 008011 266 QILEAHSDEVWFLQFSHD-GKYLASSSKD-------QSAIIWEVKEDGQ------VSLKHRLS-GHRKPVFTVSWSPNDH 330 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~-g~~lasgs~d-------g~i~iwd~~~~~~------~~~~~~~~-~h~~~V~~l~~sp~~~ 330 (581)
.+|..|.++|+.++-+|- .+.|+|+-.+ ..+.||.+..... +.++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 456779999999999994 5567776442 2478999874321 22333333 4556899999999999
Q ss_pred eEEEeeCCCcEEEEECCCCcE-EEEEe-----cCCCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCCC-eeEeeccCcc
Q 008011 331 QLLTCGQEEAIRRWDVNSGEC-LHVYE-----KTGVGLISCGWFL--DGGGIFAGMTDKSICLWDLDGR-ELESWKGQKT 401 (581)
Q Consensus 331 ~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~ 401 (581)
.+++-. |..|.+|++..+.. ...+. .+....++-+|+| |++.+++ ..|+++..||+++. +...+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhc
Confidence 998876 78999999987765 33332 2355678889998 6666655 46899999999864 3455666777
Q ss_pred ccEEEEEEeeCCC-EEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCC--
Q 008011 402 LRISDMAITDDGK-RIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDP-- 474 (581)
Q Consensus 402 ~~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~-- 474 (581)
..|.++.|+|+.+ +|++++.||.|++||.+..+ .....|...|.++.|+|. ..++++++.|..|.+|....-.
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 7899999999876 57788899999999999877 556688999999999994 5678889999999999764311
Q ss_pred --------------------------ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 475 --------------------------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 475 --------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
..+.++..|...++.+.+ .+.+.=.+|+-+.||.+.|=.+.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW--SsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW--SSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEee--ccCCCeeEEEeccCceEEeecCC
Confidence 123456677777665433 34555678889999998886654
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3e-16 Score=160.62 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=165.5
Q ss_pred CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEec
Q 008011 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 369 (581)
+..|.+||.+... ...+..|...+.+..|+|||+.|+.++.+ ..|++||+.+++.... .........++|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999987432 24466788889999999999999988654 3699999988764322 22222344689999
Q ss_pred CCCeEEEEe-CCCcEE--EEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCC--CeeeeEecCCc
Q 008011 370 DGGGIFAGM-TDKSIC--LWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILLLDREA--NFERWIEEEEV 443 (581)
Q Consensus 370 ~~~~l~sg~-~dg~i~--iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~ 443 (581)
||+.|+.++ .+|.+. +||+.++....... +...+....|+|||+.|+.++ .++...+|++.. .......+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999988765 577654 55777766655544 334678899999999877665 567777776543 3333333332
Q ss_pred eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC--CCCce
Q 008011 444 ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR--YTGEL 521 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~--~~~~~ 521 (581)
.+..|+|||+++++.+.+ .+.+||+.++ .......... .....++|+|++|+.++.++.+.+|++ .+|+.
T Consensus 336 -~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g-~~~~lt~~~~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 336 -YSAQISADGKTLVMINGD-NVVKQDLTSG-STEVLSSTFL-----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -CCccCCCCCCEEEEEcCC-CEEEEECCCC-CeEEecCCCC-----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 467899999999888765 4666999876 3222111211 112335999999999999998888875 46888
Q ss_pred EEEeccCcCCEEEEEEcCC
Q 008011 522 VLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 522 ~~~l~~h~~~v~~l~~~p~ 540 (581)
...+..|.+.+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 8999999999999999985
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=7.4e-16 Score=139.22 Aligned_cols=280 Identities=17% Similarity=0.279 Sum_probs=196.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEe-eCCCcEEEEECCCCcEEEEE
Q 008011 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 355 (581)
-+.|||+|+++|+++.- .+.|-|..+- +..+.+ ..-..|..+.|..|..+++++ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---q~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---QLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---hHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46799999999999865 6777776543 222211 123457889999888776655 56889999999999888889
Q ss_pred ecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC------------
Q 008011 356 EKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE------------ 422 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------ 422 (581)
.....++..++|+|||+.++ +...+-.|.+|.+.+........... .+..++|+|||++.+..++-
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 88899999999999997665 55568899999998877655544433 56889999999988777642
Q ss_pred ------------------------CeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC---
Q 008011 423 ------------------------AAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP--- 474 (581)
Q Consensus 423 ------------------------g~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--- 474 (581)
+.+.+||.--.- .......-.+..++|+|.+++|++|+.|+.+++.+--+..
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 234455533222 2223344668899999999999999999988875542200
Q ss_pred -----------c---------------------------------------------eeEEEe---ccccceeEEEeeeC
Q 008011 475 -----------K---------------------------------------------LVSRYK---GHKRARFVIRSCFG 495 (581)
Q Consensus 475 -----------~---------------------------------------------~~~~~~---~~~~~~~~i~~~~~ 495 (581)
. .+..++ ...++...+....+
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf 326 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF 326 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence 0 000011 11122233444556
Q ss_pred CCCCcEEEEEeCC--CcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCc
Q 008011 496 GFEQAFIASGSED--SQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 496 ~~~~~~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
++|..++++-.+. +.+.+||++..++...+. ...+|....|+|..+ .|+.+.....+++|.......
T Consensus 327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred cCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCceE
Confidence 8888888887653 589999998877665554 467899999999986 555566667799999876443
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.3e-17 Score=151.31 Aligned_cols=192 Identities=21% Similarity=0.269 Sum_probs=151.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEE
Q 008011 276 WFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
.+++|+++|..|++|+.||+++||++.+. ........|...|.++.|+|||++|++.+.| ..+||++++|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998654 3445567799999999999999999999999 9999999999776655
Q ss_pred e--cCCCeEEEEEEecCC---CeE--EEEeCCCcEEEEeCCCC------eeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 356 E--KTGVGLISCGWFLDG---GGI--FAGMTDKSICLWDLDGR------ELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 356 ~--~~~~~v~~~~~~~~~---~~l--~sg~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
. ..+.....|.|+.|+ .+. +.....+.|..||+... ...+.... ...|++++.+++|++++.|+.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEeccC
Confidence 4 223455677888766 222 23334556777776321 11111122 2379999999999999999999
Q ss_pred CeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 423 AAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
|.|.+++..+.+ .....|...|+.+.|+||.++++..+.+.++.+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999998877 23346788999999999999999999999998887754
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=1.4e-16 Score=155.23 Aligned_cols=259 Identities=16% Similarity=0.249 Sum_probs=185.7
Q ss_pred EcCCCCEEEE--EECCCeEEEEEcccCCeeeEEEeec--CCCCCeEEEEeCC-CCCeEEEeeCCCcEEEEECCCC-----
Q 008011 280 FSHDGKYLAS--SSKDQSAIIWEVKEDGQVSLKHRLS--GHRKPVFTVSWSP-NDHQLLTCGQEEAIRRWDVNSG----- 349 (581)
Q Consensus 280 ~s~~g~~las--gs~dg~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~sp-~~~~l~s~~~dg~i~vwd~~~~----- 349 (581)
|..+..++|. .+..|.|-||++...+++.- ..+. .....|+.+.|.| |...|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3344555553 45678999999986654311 1111 1345699999999 7789999999999999998754
Q ss_pred --cEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 350 --ECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 350 --~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.....+..|...|+++.|+| -.+.|++++.|-+|++||+.+.........|...|.+++|+|+|+.+++.|.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34567889999999999999 456789999999999999999888888888889999999999999999999999999
Q ss_pred EEECCCCeeeeEecCCc----eEEEEECCCCCEEEEEeeCC----cEEEEEecCCC-ceeEEEeccccceeEEEeeeCCC
Q 008011 427 LLDREANFERWIEEEEV----ITSFSLSKDNKYLLVNLINQ----EIHLWSIESDP-KLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 427 i~d~~~~~~~~~~~~~~----i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
+|..+..........++ --.+.|--||+++++.+.|. .|.+||..+.. .++.+..-..... +-.-++.+
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps--~LvP~YD~ 823 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS--PLVPHYDY 823 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc--cccccccC
Confidence 99999887555544433 35677888999999887664 68888876542 2222222111111 11122244
Q ss_pred C-CcEEEEEeCCCcEEEEeCCCCce-EEEeccCcCCE--EEEEEcCCC
Q 008011 498 E-QAFIASGSEDSQVYIWHRYTGEL-VLALAGHSGSV--NCVSWNPAN 541 (581)
Q Consensus 498 ~-~~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v--~~l~~~p~~ 541 (581)
| +-++++|-.|..|++|.+-...+ +..+..|..++ ..++|.+..
T Consensus 824 Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeeccc
Confidence 4 44677888899999999765443 33444443332 356666654
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=6.5e-16 Score=156.88 Aligned_cols=245 Identities=15% Similarity=0.172 Sum_probs=179.8
Q ss_pred ccCcEEEEEEcC-CCCEEEEEECCCeEEEEEcccCCe--e-eEEEeecCCCCCeEEEEeCCCCC--eEEEeeCCCcEEEE
Q 008011 271 HSDEVWFLQFSH-DGKYLASSSKDQSAIIWEVKEDGQ--V-SLKHRLSGHRKPVFTVSWSPNDH--QLLTCGQEEAIRRW 344 (581)
Q Consensus 271 h~~~V~~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~V~~l~~sp~~~--~l~s~~~dg~i~vw 344 (581)
-...|+|+.|+| +..++|.|..+|.|.+||+..+.. . ........|..+|+.+.|..+-. -+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 566888999999999999986543 1 12233457999999999987544 49999999999999
Q ss_pred ECCCCcE------EEEEe------cCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC---Ce-----eEeeccCcccc
Q 008011 345 DVNSGEC------LHVYE------KTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG---RE-----LESWKGQKTLR 403 (581)
Q Consensus 345 d~~~~~~------~~~~~------~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~---~~-----~~~~~~~~~~~ 403 (581)
+++.-.. ..... .....++++.|.+ +...+++|+.+|.|..-+-.+ .. .......|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322 11111 2245688899988 566799999999988744322 21 12234456679
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECC-CCe--eeeEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCC-CceeE
Q 008011 404 ISDMAITDDGKRIISICREAAILLLDRE-ANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD-PKLVS 478 (581)
Q Consensus 404 v~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~-~~~~~ 478 (581)
|.++.++|-+..++..+.|-++++|... ... ..+..+...+++++|||.. ..|+++..+|.+.+||+... ..++.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999988877777779999999987 333 3444556669999999965 56777777999999999653 23343
Q ss_pred EEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC
Q 008011 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
....+ ...+...++++.|++|++|...|.+++|++..
T Consensus 481 s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 33333 33466677799999999999999999999853
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.8e-16 Score=142.81 Aligned_cols=268 Identities=14% Similarity=0.238 Sum_probs=185.1
Q ss_pred eeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcC--CCCEEEEEECCCeEEEEEcccCCeeeEEEeecC
Q 008011 238 LFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG 315 (581)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~ 315 (581)
+......+.+.+|+.. ..+.+..+++|...++.++|.. .+..+.+|+.||+|++||++...+.. ......
T Consensus 43 vav~lSngsv~lyd~~-------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~ 114 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKG-------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWTQ 114 (376)
T ss_pred EEEEecCCeEEEEecc-------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heeccC
Confidence 3344556677787643 2456788999999999999987 46789999999999999998766543 333455
Q ss_pred CC-CCeEEEEeCCCCCeEEEeeC----CCcEEEEECCCCcE-EEE-EecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEe
Q 008011 316 HR-KPVFTVSWSPNDHQLLTCGQ----EEAIRRWDVNSGEC-LHV-YEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 316 h~-~~V~~l~~sp~~~~l~s~~~----dg~i~vwd~~~~~~-~~~-~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd 387 (581)
+. .+..|++..-+++.+++|.. +-.|.+||++..+. +.. ...|...|+++.|+| +.+.|++|+.||-|.+||
T Consensus 115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 55 56778877767778887753 56799999998765 444 457899999999999 567899999999999999
Q ss_pred CCCCe----eEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCeee-eEecC-------------CceEEEE
Q 008011 388 LDGRE----LESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFER-WIEEE-------------EVITSFS 448 (581)
Q Consensus 388 ~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-------------~~i~~~~ 448 (581)
+.... +.... .+...|.++.|..++ +.+.+.+...+..+|+++.+... ..... ..+...-
T Consensus 195 ~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 195 TKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred cCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 96432 22222 233479999999876 56889999999999999887621 11111 1111111
Q ss_pred ECCCCCEEEEEee-CCcEEEEEecC---C--CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 449 LSKDNKYLLVNLI-NQEIHLWSIES---D--PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 449 ~sp~~~~l~~~~~-d~~i~iwd~~~---~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
...+....++++. -+...++-+.. + .+.+..+.++.. ..++..++...+.++++|++||.+.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~--eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHE--EIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcH--HHHHHHhhhcccceeeccCCCceEEEEec
Confidence 1224445555444 55555554432 1 133344444322 24556666778899999999999999985
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=2.7e-14 Score=141.40 Aligned_cols=274 Identities=13% Similarity=0.162 Sum_probs=183.3
Q ss_pred EEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEE
Q 008011 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCG 366 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 366 (581)
+++-..++.|.|.|..+. +....+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...+++
T Consensus 9 ~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 345567899999999876 4445555444433457899999999999999999999999999999987655 567899
Q ss_pred EecCCCeEEEEe-CCCcEEEEeCCCCeeEeeccC-------ccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe---
Q 008011 367 WFLDGGGIFAGM-TDKSICLWDLDGRELESWKGQ-------KTLRISDMAITDDGKRIISICR-EAAILLLDREANF--- 434 (581)
Q Consensus 367 ~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--- 434 (581)
+++||++++++. ..+.+.++|.++.+....... ...++..+..++....++..-. .+.|.+.|.....
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 588999999988766544321 2346788888888886665555 5889999977654
Q ss_pred eeeEecCCceEEEEECCCCCEEEEEe-eCCcEEEEEecCCCceeEEE---------------------------------
Q 008011 435 ERWIEEEEVITSFSLSKDNKYLLVNL-INQEIHLWSIESDPKLVSRY--------------------------------- 480 (581)
Q Consensus 435 ~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~--------------------------------- 480 (581)
..............|+|++++++++. .++.|.++|..+. +.+..+
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 44556677788999999999987754 4567777777664 222211
Q ss_pred ----------------------eccccceeEEEeeeCCCCCcEEEEE----eCCCcEEEEeCCCCceEEEeccCc-CCEE
Q 008011 481 ----------------------KGHKRARFVIRSCFGGFEQAFIASG----SEDSQVYIWHRYTGELVLALAGHS-GSVN 533 (581)
Q Consensus 481 ----------------------~~~~~~~~~i~~~~~~~~~~~l~sg----s~dg~I~iwd~~~~~~~~~l~~h~-~~v~ 533 (581)
...... . .+..+|+++++++. ...++|.++|.++.+.+.++.... ..+.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l---Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-L---FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-c---eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 110011 0 11237788999887 445799999999998888876432 3599
Q ss_pred EEEEcCCCCcEEEEEECCC-cEEEEcCCCcCcccccC
Q 008011 534 CVSWNPANLHMLASASDDR-TIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg-~I~iW~~~~~~~~~~~~ 569 (581)
.+.|+++|..+.+|.-.++ .|.|||..+.++..+..
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999999976666665555 89999999999887765
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=150.10 Aligned_cols=261 Identities=16% Similarity=0.183 Sum_probs=183.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeE-EEEeCC-------CCCeEEEeeCCCcE
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSP-------NDHQLLTCGQEEAI 341 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~sp-------~~~~l~s~~~dg~i 341 (581)
.|...|.|+.|+.+...+.+++.+..+.-|++.+. ........ ...|. .+..-+ ....|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCC---cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 47777889999998887776665544444454432 21111111 11111 111111 23578889999999
Q ss_pred EEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 342 RRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 342 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
.+.+ ..++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- ++.+.........+|.|++|.|+.+.++.+.
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence 9987 567777888899999999999999999999999999999985 4444444455556899999999987666543
Q ss_pred CCeEEEEECC--CCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCC
Q 008011 422 EAAILLLDRE--ANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQ 499 (581)
Q Consensus 422 dg~i~i~d~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 499 (581)
.+.+.+=.+. ....++..|++-|.++.|++..+.+++|+.|-..++||-... .+..-..|. +.|++..|.|+
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~e---y~ITSva~npd- 238 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--NLFTSAAEE---YAITSVAFNPE- 238 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--ccccCChhc---cceeeeeeccc-
Confidence 3444444444 344889999999999999999999999999999999998663 333333343 34666667888
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008011 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
..++.+|.+ +++ --....+.|..++|++|| ..++.|...|.+.+
T Consensus 239 ~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADG-TQATCGTSTGQLIV 282 (737)
T ss_pred cceeeeeee-eee-----------ecCCCccceEEEEEcCCC-ceeeccccCceEEE
Confidence 555555532 222 122346889999999999 68888888887765
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-14 Score=125.45 Aligned_cols=228 Identities=14% Similarity=0.198 Sum_probs=165.2
Q ss_pred ceeccCCCCCceeeccCCC---CcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCee---eEE
Q 008011 237 CLFHNTSDSDFSLYSDHQC---GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV---SLK 310 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~---~~~ 310 (581)
.++.....+.+.+++-... .........+...++|.++|+.++|. ..+|++|+ ||.|+=|.+....+- +..
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhh
Confidence 3667777777766653322 11222223355568999999999998 34677765 699999988643220 000
Q ss_pred --EeecCCC-----CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcE
Q 008011 311 --HRLSGHR-----KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSI 383 (581)
Q Consensus 311 --~~~~~h~-----~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i 383 (581)
.....|. -.|+++...|..+-+++++.|+.++-||+++|+..+++++|.+.+.++.--.....+++|+.||++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 0111122 348999999988888888899999999999999999999999999999986677789999999999
Q ss_pred EEEeCCCCeeEeeccC----------ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCC
Q 008011 384 CLWDLDGRELESWKGQ----------KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKD 452 (581)
Q Consensus 384 ~iwd~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~ 452 (581)
++||.++++....... -...|-+++. +..++++|+ ...+.+|.++... ...+....++..+.|..
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~- 256 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD- 256 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec-
Confidence 9999988765443321 1123444444 455777654 5678999999888 67778888899999954
Q ss_pred CCEEEEEeeCCcEEEEEecC
Q 008011 453 NKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 453 ~~~l~~~~~d~~i~iwd~~~ 472 (581)
+.+++++..+.+.-|.+..
T Consensus 257 -d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 257 -DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -ceEEEeccccceeeeeecc
Confidence 4688888888999998865
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.5e-15 Score=135.07 Aligned_cols=244 Identities=19% Similarity=0.292 Sum_probs=176.5
Q ss_pred cccCcEEEEEEcCCCC-----EEEEEECCCeEEEEEcccC-CeeeEEEe-----ecCCCCCeEEEEeCC-CCCeEEEeeC
Q 008011 270 AHSDEVWFLQFSHDGK-----YLASSSKDQSAIIWEVKED-GQVSLKHR-----LSGHRKPVFTVSWSP-NDHQLLTCGQ 337 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~-----~lasgs~dg~i~iwd~~~~-~~~~~~~~-----~~~h~~~V~~l~~sp-~~~~l~s~~~ 337 (581)
.|.-+++.+.|.|+.. +|||++ ..+++|.+... .+..+... -..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999763 566654 36999998742 22222222 234667899999987 7789999999
Q ss_pred CCcEEEEECCCCc---EEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCC
Q 008011 338 EEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 338 dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
|-+..|||++++. ....+-.|+..|..++|...+ +.|++.+.||.|++||++..+-.++..... .
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p----------~- 240 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP----------S- 240 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC----------C-
Confidence 9999999999873 355667899999999999854 468889999999999997643222211110 0
Q ss_pred CEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECC-CCCEEEEEee-CCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 414 KRIISICREAAILLLDREANFERWIEEEEVITSFSLSK-DNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
...+...++|++ |.+++++-.. ...|.+.|++....++..+.+|...+..+.
T Consensus 241 --------------------------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIa 294 (364)
T KOG0290|consen 241 --------------------------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIA 294 (364)
T ss_pred --------------------------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceE
Confidence 022344555655 4556666544 457999999998899999999999988777
Q ss_pred eeeCCCCCcEEEEEeCCCcEEEEeCCCCc------eEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008011 492 SCFGGFEQAFIASGSEDSQVYIWHRYTGE------LVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~dg~I~iwd~~~~~------~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
+.. .....|++++.|.++.+||+...- ++..+. -.+.|+.+.|++..+..++.+.. +++.|
T Consensus 295 WaP--hS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 295 WAP--HSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecC--CCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 654 356799999999999999986532 222222 46789999999888778887764 34433
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=7.2e-15 Score=153.86 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=183.7
Q ss_pred eEEEeecCCCCCeEEEEeCCCC-CeEEEeeCCCcEEEEECCC-------CcEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008011 308 SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
..+..+..|...|..++.++.. .++++|+.||+|++||... .+...++......+.++...+.+..+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4566788899999999988755 9999999999999999853 1233445545678888888999999999999
Q ss_pred CCcEEEEeCCCCee-------Eeec-cCccccE-EEEEEee-CCC-EEEEEEcCCeEEEEECCCCe----eeeEecCCce
Q 008011 380 DKSICLWDLDGREL-------ESWK-GQKTLRI-SDMAITD-DGK-RIISICREAAILLLDREANF----ERWIEEEEVI 444 (581)
Q Consensus 380 dg~i~iwd~~~~~~-------~~~~-~~~~~~v-~~i~~~~-~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i 444 (581)
||.|.+.+++.... .... ....+.+ ..-++.. .+. .++.+...+.|..||++... .+.....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999864211 1111 1112223 3333333 233 68888899999999999876 3444567789
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEE-eccccceeEEEeeeCCCCCcEEEEEeC--CCcEEEEeCCCCce
Q 008011 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRY-KGHKRARFVIRSCFGGFEQAFIASGSE--DSQVYIWHRYTGEL 521 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~sgs~--dg~I~iwd~~~~~~ 521 (581)
++++.+|.+.++++|+..|.+.+||++-+ .++..+ ..+......+.+++..+.....++++. .+.|.+|++.+|.+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999999999999999999987 444443 344455556667776666666665554 67999999999876
Q ss_pred EEEeccCc--------C-----------CEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 522 VLALAGHS--------G-----------SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 522 ~~~l~~h~--------~-----------~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
...+.... . ......+...+ .++.+|+.|..|+.||....+.-
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcccc
Confidence 66554320 0 11122222223 48999999999999999877654
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.4e-16 Score=151.22 Aligned_cols=241 Identities=14% Similarity=0.248 Sum_probs=170.9
Q ss_pred ceeccCCCCCceeeccCCC-CcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCC-------eee
Q 008011 237 CLFHNTSDSDFSLYSDHQC-GRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG-------QVS 308 (581)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~-------~~~ 308 (581)
.++..+.+..+.+|.-... .......+++.++.+|.++|.|++++++++.+.+|+.||+|+.|++..+. ...
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 4455566667777754211 11223456789999999999999999999999999999999999765221 123
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC--CCeEEEEEEecCC-CeEEEEeCCCcEEE
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT--GVGLISCGWFLDG-GGIFAGMTDKSICL 385 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~sg~~dg~i~i 385 (581)
....+.||.+.|+.+++|+....|++|+.||+++.|+...... .+|... .+..+++.+-... .+.++...-+.-.+
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence 4567889999999999999999999999999999999876655 333322 2223344443222 12222222222222
Q ss_pred EeCCCCeeEeecc-------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEE
Q 008011 386 WDLDGRELESWKG-------QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYL 456 (581)
Q Consensus 386 wd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l 456 (581)
+++.......+.. .....+..+.++|.+...+++..|+.|+++|..++. .....|...++++++.|+|-+|
T Consensus 467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l 546 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYL 546 (577)
T ss_pred hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceE
Confidence 2332221111111 112357788899999999999999999999999988 5667889999999999999999
Q ss_pred EEEeeCCcEEEEEecCCCceeEE
Q 008011 457 LVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
++++.|+.+++|.+... .++..
T Consensus 547 ~s~s~d~sv~l~kld~k-~~~~e 568 (577)
T KOG0642|consen 547 MSGSHDGSVRLWKLDVK-TCVLE 568 (577)
T ss_pred EeecCCceeehhhccch-heeec
Confidence 99999999999998765 34333
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-14 Score=145.98 Aligned_cols=233 Identities=13% Similarity=0.148 Sum_probs=164.6
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC---CCcEEEEECCCCcEEEEEecCCCeEEEEEEecC
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++..... .....+....|+||
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 3688888874322 234456778999999999999887643 357999999888654322 22333456899999
Q ss_pred CCeEEEE-eCCC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCe-eeeEecCCc
Q 008011 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 371 ~~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~ 443 (581)
|+.|+.. +.+| .|++||++++......... ..+....|+|||+.|+.++.+ + .|+.+|+.++. .........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988865 4444 5999999888776665443 367889999999999877754 3 56666777765 333334445
Q ss_pred eEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCc---EEEEeCC
Q 008011 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ---VYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~---I~iwd~~ 517 (581)
.....|+|||++++..+.+ ..|.+||+.++ . ...+.... . .....++|+|+.|+.++.++. ++++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~~-~---~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDTF-L---DETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCCC-C---CCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 6678999999999887654 35888998776 2 23333221 1 112334899999999888764 677777
Q ss_pred CCceEEEeccCcCCEEEEEEcC
Q 008011 518 TGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~~p 539 (581)
+|.....+.+|.+.+...+|+|
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEECccCCCCcCCcccCC
Confidence 5677778888989999999998
No 204
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=3.1e-15 Score=143.67 Aligned_cols=275 Identities=16% Similarity=0.230 Sum_probs=181.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCee--eEEEeecCCCCCeEEEEe-----CCCCCeEEEeeCCCcEEEEEC
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV--SLKHRLSGHRKPVFTVSW-----SPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~~~~~h~~~V~~l~~-----sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.+....++-.|++|+..- ...+++|+....... .+.+.+..-.+ ..|-+| .|.+--++.|-..|.|.+.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~-P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTS-PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCC-CceecccccccCCCCcceEEeeccCceEEecc
Confidence 344555555667776543 235888887632211 11111111122 223333 346667888888899999987
Q ss_pred CCCcEEEEEe----cCCCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 347 NSGECLHVYE----KTGVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 347 ~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
...+..+.+. .....++|+.|-|. ...++++-.+|.+++||..-. ... .-.+-...+++..+.....
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~--t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA--TAPSYQALKDGDQFAILTS 274 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC--CCCcccccCCCCeeEEeee
Confidence 6533222221 12468999999994 456777788999999987210 000 0111122234444433221
Q ss_pred CCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcE
Q 008011 422 EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 422 dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
-+.. .++....+....+.|..++|+|||++|++.+.||.++|||..+. .++..++..-+. +.|+.|+|||+|
T Consensus 275 ksk~----~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGG---LLCvcWSPDGKy 346 (636)
T KOG2394|consen 275 KSKK----TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGG---LLCVCWSPDGKY 346 (636)
T ss_pred eccc----cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccc---eEEEEEcCCccE
Confidence 1100 01222444555668999999999999999999999999999886 554444443333 556667999999
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCC-----------------------------------------
Q 008011 502 IASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA----------------------------------------- 540 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~----------------------------------------- 540 (581)
|++|++|--|.||.+...+.+..-.+|.+.|+.|+|.|-
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 999999999999999999999999999999999999830
Q ss_pred ------CCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 541 ------NLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 541 ------~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
-.+.|.+.+.|-.+.+||+....+..
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhccc
Confidence 01468889999999999998776665
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=6.4e-13 Score=122.52 Aligned_cols=235 Identities=11% Similarity=0.129 Sum_probs=170.2
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC--cEEEEECCCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--AIRRWDVNSG 349 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--~i~vwd~~~~ 349 (581)
...+..+.|+.+...|..|+.|| -++|+.....+. .........|.-+-|+ ..++|..+.+. .++++++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999998 688887654321 1111122335555665 44666666543 4899998888
Q ss_pred cEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC---ccccEEEEEEeeCCCEEEEEE--cCCe
Q 008011 350 ECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---KTLRISDMAITDDGKRIISIC--REAA 424 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~--~dg~ 424 (581)
..+..+.-. ..|.++.++ .++|+++-.+. |+|||++..++...... +...+.++++++.+.+++.-+ ..|.
T Consensus 79 ~~ICe~~fp-t~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIFFP-TSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEecC-CceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 777766443 478888875 45677766654 99999988776544322 333466666666667777543 4689
Q ss_pred EEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCc-EEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcE
Q 008011 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAF 501 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 501 (581)
|.+||..+-. .....|.+.+.+++|+++|.+|++++..|+ |+++.+.++ +.+..|.-...... |....+++++.+
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~~~-IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYPVS-IYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-cEeeeeeCCceeeE-EEEEEECCCCCe
Confidence 9999999877 566689999999999999999999999886 689999988 56666654444433 444455999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 008011 502 IASGSEDSQVYIWHRYT 518 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~ 518 (581)
|++.|+.++|+||.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998653
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.7e-15 Score=137.12 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=148.2
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---e-eeE
Q 008011 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---E-RWI 438 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~-~~~ 438 (581)
.+++|+.+|..+++|+.||++++|+............+...|.++.|+|||+.|++.+.| ..++|+.+++. . .-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999976555554455555699999999999999999999 99999999985 1 113
Q ss_pred ecCCceEEEEECCCC---CEEEE--EeeCCcEEEEEecCCCceeEEEe--ccccceeEEEeeeCCCCCcEEEEEeCCCcE
Q 008011 439 EEEEVITSFSLSKDN---KYLLV--NLINQEIHLWSIESDPKLVSRYK--GHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~---~~l~~--~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
..+.....+.|+.|+ .+++. ....+.|..||+.....- ..+. ........+.+...+++|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 344556778888776 33333 333567777777543221 1111 111111235666669999999999999999
Q ss_pred EEEeCCCCceEEEe-ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 512 YIWHRYTGELVLAL-AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 512 ~iwd~~~~~~~~~l-~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
-|++..+-+.++.. +.|...|+.+.|+|+. +.+++.+.|..+.+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 99999988877655 4699999999999998 7999999999999988765
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.3e-14 Score=129.03 Aligned_cols=272 Identities=18% Similarity=0.223 Sum_probs=177.1
Q ss_pred cccceeccCCCCCceeeccCCCCcccccccceeeec-cccCcEEEEEEcCCC-CEEEEEECCCeEEEEEcccCCeeeE--
Q 008011 234 RDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKEDGQVSL-- 309 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~-- 309 (581)
+..|+.....|..+.+|++... +...++ .....|+|++|-|.+ +-|+.|+..| |.||..........
T Consensus 109 H~~~fava~nddvVriy~ksst--------~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSST--------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCC--------CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 3445556667778888876541 122222 245689999999955 4677777666 99998763221111
Q ss_pred ---------EEeecCCCCCeEEEEeCCCCCeEEEeeC-CCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008011 310 ---------KHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 310 ---------~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
+..-.+| .+|++|.|.+||..+++++. |..|.|||+.++..+.......+.+.-+.|+||+.+|+++.-
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 1122345 68999999999999999986 567999999999887766566678889999999999999999
Q ss_pred CCcEEEEeC-CCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe-----------eeeE--------
Q 008011 380 DKSICLWDL-DGRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREANF-----------ERWI-------- 438 (581)
Q Consensus 380 dg~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~-----------~~~~-------- 438 (581)
|+..++|+. ++.....+..... .|...+|+|+|++|+.++. ...++-....... ....
T Consensus 259 davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred cceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 999999965 4444455554444 8999999999998765543 3333332222111 0000
Q ss_pred -----ecCCceEEEEECCCCCEEEEEeeCCc--------EEEEEecCCCceeEEEeccccc--eeEEEeeeCCCCCcEEE
Q 008011 439 -----EEEEVITSFSLSKDNKYLLVNLINQE--------IHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 439 -----~~~~~i~~~~~sp~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 503 (581)
...+.+.+++|+|.|.+|++....+. |.+||.+........+-+.... ...+.+.+...++.+|.
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLs 417 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLS 417 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEE
Confidence 11467899999999999999876543 6677776642222222222111 11233333334556666
Q ss_pred EEeCCCcEEEEeC
Q 008011 504 SGSEDSQVYIWHR 516 (581)
Q Consensus 504 sgs~dg~I~iwd~ 516 (581)
.+=..|.|.-|++
T Consensus 418 iaWsTGriq~ypl 430 (445)
T KOG2139|consen 418 IAWSTGRIQRYPL 430 (445)
T ss_pred EEeccCceEeeee
Confidence 6656666655553
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=8.1e-15 Score=150.05 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=149.0
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee-CCCc
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg~ 340 (581)
.+.+..|...|.+.+|||||+.|+.++.+ ..|++||+.++.. ..+..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 45667788899999999999999987654 3699999976532 233334444 34689999999888765 6776
Q ss_pred EEEE--ECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCC--CCeeEeeccCccccEEEEEEeeCCCE
Q 008011 341 IRRW--DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 341 i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
+.|| |+.++.. ..+..+...+....|+||++.|+.++ .+|...+|+++ ++..... . +. . ....|+|+|+.
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~-~-~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GR-G-YSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CC-C-CCccCCCCCCE
Confidence 6555 6666654 44556666788899999999877655 57777888763 3333222 2 22 1 45789999999
Q ss_pred EEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC-CCceeEEEeccccc
Q 008011 416 IISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES-DPKLVSRYKGHKRA 486 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 486 (581)
++.++.++ +..||+.++............++.|+|||++|+.++.++.+.+|++.. .......+..+.+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~ 417 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ 417 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence 98887765 556999887633332223446788999999999999999888887632 22566666666543
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.7e-14 Score=138.30 Aligned_cols=279 Identities=10% Similarity=0.140 Sum_probs=194.8
Q ss_pred ccCcEEEEEEcCCCCEE-EEEECCCeEEEEEcccCCeeeEEEeecCC--CCCeEEEEeCCCCCeEEEeeCCCcEEEEECC
Q 008011 271 HSDEVWFLQFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
|...-+.|..+|||+|+ |||..--.|++||+..- .+ .+.-| ...|.-.-.+.|-..++.-..|.+|-+..--
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-SL----KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-SL----KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc-ee----eeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 66777889999999975 56777888999999732 22 22223 3345555566565666666777777665422
Q ss_pred CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE
Q 008011 348 SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL 427 (581)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 427 (581)
|.. ..+..+ ..-..++++.-.--|++++....|+-++++.+....-.......++++.+++....|++|+.+|.|.+
T Consensus 125 -G~h-y~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 125 -GRH-YRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred -Cee-eeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 221 111111 12244555544445666667778999999888776666666678999999999999999999999999
Q ss_pred EECCCCe-eeeEe-------cC-----CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeee
Q 008011 428 LDREANF-ERWIE-------EE-----EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCF 494 (581)
Q Consensus 428 ~d~~~~~-~~~~~-------~~-----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (581)
||.+... ...+. +. ..|+++.|+.+|-.+++|+.+|.+.|||+++...+...-.+..-+ .....|
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p--i~~l~~ 279 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP--IKKLDW 279 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc--eeeecc
Confidence 9999876 22221 22 239999999999999999999999999999974444433333333 333333
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 495 GGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 495 ~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
...++.-.+.......++|||-.+|+....+.. ...++.+|+-|++ .+++++-+++.+..|=+..
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence 222333333344556899999999999988875 4459999999998 5999999998887776654
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=2.4e-15 Score=144.23 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=175.8
Q ss_pred CCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEE-EEEEec-------CCCeEEEEeCCCcEEEE
Q 008011 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFL-------DGGGIFAGMTDKSICLW 386 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~-------~~~~l~sg~~dg~i~iw 386 (581)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. ..........+. .+...+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 466667899999877766666655445555554332 222222211111 111111 23568899999999988
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcE
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
+-. +.+......|.+.+.+-.|+|||.-|++++.||.|++|...... ........+|.|++|.|+.+.++.+. .+.+
T Consensus 91 ~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~ 168 (737)
T KOG1524|consen 91 NKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHI 168 (737)
T ss_pred ccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeE
Confidence 743 44555556677799999999999999999999999999977665 44456678899999999988776654 5677
Q ss_pred EEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEE
Q 008011 466 HLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHML 545 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l 545 (581)
.|=.+... ..+-..+.|.+- +-++.|++..++|++|++|-..+|||. .|..+..-..|+.+|++++|+|+. .+
T Consensus 169 ~IKpL~~n-~k~i~WkAHDGi---iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~--~~ 241 (737)
T KOG1524|consen 169 SIKPLAAN-SKIIRWRAHDGL---VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEK--DY 241 (737)
T ss_pred EEeecccc-cceeEEeccCcE---EEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecccc--ce
Confidence 77777666 445567788775 455666999999999999999999995 688888888999999999999984 55
Q ss_pred EEEECCCcEEEEcCCCcCcccccCCCceEEecCCC
Q 008011 546 ASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNGR 580 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G~ 580 (581)
+.+|. +++|+=.. .....-++.|++||.
T Consensus 242 ~v~S~-nt~R~~~p------~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 242 LLWSY-NTARFSSP------RVGSIFNLSWSADGT 269 (737)
T ss_pred eeeee-eeeeecCC------CccceEEEEEcCCCc
Confidence 55554 35552222 223356677777773
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=7.6e-14 Score=128.55 Aligned_cols=235 Identities=14% Similarity=0.168 Sum_probs=172.4
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeeEe
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELES 395 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~ 395 (581)
..+..+.|+.+...|..|+.|| .++|..+..............|.-+-|+ ...++..+.+. .+++++++.+....
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 4567777998888888888887 5777766544322222334455556665 34665555443 48889887665554
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eee----EecCCceEEEEECCCCCEEEEEee--CCcEEEE
Q 008011 396 WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERW----IEEEEVITSFSLSKDNKYLLVNLI--NQEIHLW 468 (581)
Q Consensus 396 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~----~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iw 468 (581)
...... .|.++.++. ++|+++-.+. |+|||+++.+ ... ..+...+..+++++.+.+++.-+. .|.|.+|
T Consensus 83 e~~fpt-~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPT-SILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCC-ceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 443333 687777764 4566655544 9999999988 211 134445666666767778887543 7899999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccC--cCCEEEEEEcCCCCcEE
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGH--SGSVNCVSWNPANLHML 545 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h--~~~v~~l~~~p~~~~~l 545 (581)
|+.+- +++..+..|.+. +.+..++++|.+||++|+.| .|+||.+.+|+.+..|+-- -..|.+++|+|++ .+|
T Consensus 159 d~~nl-~~v~~I~aH~~~---lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-~~L 233 (391)
T KOG2110|consen 159 DTINL-QPVNTINAHKGP---LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-QFL 233 (391)
T ss_pred Ecccc-eeeeEEEecCCc---eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-CeE
Confidence 99988 888999999988 55666699999999999999 5799999999999998743 3468899999999 699
Q ss_pred EEEECCCcEEEEcCCCcCc
Q 008011 546 ASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 546 ~s~s~Dg~I~iW~~~~~~~ 564 (581)
++.|..++|+||.+++...
T Consensus 234 ~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVSN 252 (391)
T ss_pred EEecCCCeEEEEEeccccc
Confidence 9999999999999987663
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-14 Score=131.27 Aligned_cols=191 Identities=18% Similarity=0.261 Sum_probs=142.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEee-cCCCCCeEEEEeCCCC-CeEEEeeCCCcEEEEECCCC--
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL-SGHRKPVFTVSWSPND-HQLLTCGQEEAIRRWDVNSG-- 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~vwd~~~~-- 349 (581)
.+..++|++.-..+|++..|-.|+||+-... . ...+ ......|+|++|-|.+ ..|+.|+. +-|++|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~---pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C---PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC-C---CceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 4567888886667888999999999997652 1 1122 2234569999999965 45666665 56999976421
Q ss_pred --cE--------EE--EEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEE
Q 008011 350 --EC--------LH--VYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 350 --~~--------~~--~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
.. .. ...+| .+|+++.|.+||..+++++. |..|.+||.+++..........+.++-+.|+||+.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 11 12233 68999999999999999885 5689999999888777765666689999999999999
Q ss_pred EEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008011 417 ISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
.++.-|+..++|...... .++.-..+.|+..+|+|+|++|+.++ .+.-.+|.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~ 309 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLT 309 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEe
Confidence 999999999999655443 66666777999999999999988766 3444555543
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2e-14 Score=133.30 Aligned_cols=253 Identities=15% Similarity=0.186 Sum_probs=190.2
Q ss_pred CCCCeEEEEeCCCCC--eEEEeeCCCcEEEEECCCCcEEEEE------ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008011 316 HRKPVFTVSWSPNDH--QLLTCGQEEAIRRWDVNSGECLHVY------EKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 316 h~~~V~~l~~sp~~~--~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 387 (581)
....|..++|..+++ .+..++.+..+..+.+....+.... ......|..+... +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345577788876553 4555556667777777665544432 2334556665543 45788889999999999
Q ss_pred CC-----CCeeEeeccCccccEEEEEEeeCCCEE-EEEEcC--CeEEEEECCCCeeeeEe-----------cCCceEEEE
Q 008011 388 LD-----GRELESWKGQKTLRISDMAITDDGKRI-ISICRE--AAILLLDREANFERWIE-----------EEEVITSFS 448 (581)
Q Consensus 388 ~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d--g~i~i~d~~~~~~~~~~-----------~~~~i~~~~ 448 (581)
.. ...+..+..+. .+..+.-++....+ ++|+.. ..+.+||+.+....+.. .+-.++.+.
T Consensus 132 ~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 87 33344443332 56667666655555 458888 88999999988644432 234578889
Q ss_pred ECCC--CCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEE-e
Q 008011 449 LSKD--NKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-L 525 (581)
Q Consensus 449 ~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-l 525 (581)
|-+. ...|++++.-+.+++||.+.+..++..+...... +.+....|++++|++|..-|.+..||.+.++.... +
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---ceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 9887 8899999999999999999998999998877666 44445578999999999999999999999998876 8
Q ss_pred ccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCccccc----CCCceEEe
Q 008011 526 AGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRD----QSNGIVHH 576 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~----~~~~~~~~ 576 (581)
.+-.+.|.++..+|.+ .++++||-|..|||+|+.+.++.+.. ..+.+++.
T Consensus 287 kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~ 340 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR 340 (412)
T ss_pred CCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence 8999999999999998 59999999999999999997776542 24555443
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=144.02 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=202.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.-..+.++.+|..|+.|+..|.+-.+|+.+. .+...+. -...|.++.|..+.+++|++ ....+.||| ..|..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEe
Confidence 3457889999999999999999999999875 2333332 24568899999888887776 456899999 5688888
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008011 354 VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
.++.+. .|..+.|.|.--.|++++..|.+..-|+..+++........+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus 205 Clk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 205 CLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred ehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 887765 6889999999888999999999999999999888777777778999999999999999999999999999888
Q ss_pred e--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcE
Q 008011 434 F--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 434 ~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
. .....|.++|.++++.++|.|+++++.|..++|||+++..++......+... ...+| .+-+++.+....|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~-----~ls~S--qkglLA~~~G~~v 356 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPAS-----NLSLS--QKGLLALSYGDHV 356 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcc-----ccccc--cccceeeecCCee
Confidence 7 7788999999999999999999999999999999999874433333323222 11113 2334455566679
Q ss_pred EEEe-CCC--CceEEEeccC--cCCEEEEEEcCCCCcEEEEEECCC
Q 008011 512 YIWH-RYT--GELVLALAGH--SGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 512 ~iwd-~~~--~~~~~~l~~h--~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
.||. .-. +.....+..| .++|.++.|.|-. .+|-.|-.-|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCC
Confidence 9995 222 1222222233 4689999999976 4555544444
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.3e-15 Score=143.66 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=163.2
Q ss_pred EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe-cCCCeEEEEEEec--CCCeEEEEeCCCcEEE
Q 008011 309 LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSICL 385 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~dg~i~i 385 (581)
....+.||.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345689999999999999999999999999999999998888877764 7899999999998 5678899999999999
Q ss_pred EeCCC----------CeeEeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCeee------------eEecCC
Q 008011 386 WDLDG----------RELESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANFER------------WIEEEE 442 (581)
Q Consensus 386 wd~~~----------~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~ 442 (581)
+|+.. .+.......|..+|..++..|++ +.+.+++.||+|+-+|++..... .....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99963 12233334566689999999998 78999999999999999874411 111223
Q ss_pred ceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCc-----------------eeEEEe-ccc--------cceeEEEeeeC
Q 008011 443 VITSFSLSK-DNKYLLVNLINQEIHLWSIESDPK-----------------LVSRYK-GHK--------RARFVIRSCFG 495 (581)
Q Consensus 443 ~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~-~~~--------~~~~~i~~~~~ 495 (581)
...++.++| +..+|++|+.|...++||.+...+ .+..|. +|- .....+....+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 467899999 456899999999999999532100 122221 111 11223455566
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
+|+|.-|...-..-.|+++|+..++....+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 899887776666668999999887765443
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=141.75 Aligned_cols=233 Identities=16% Similarity=0.134 Sum_probs=161.7
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEecC
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||..... ...+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ........+..|+||
T Consensus 184 ~~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 468889886432 23455677789999999999999987743 4699999988875433 333444557899999
Q ss_pred CCeEEE-EeCCC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-CC--eEEEEECCCCee-eeEecCCc
Q 008011 371 GGGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EA--AILLLDREANFE-RWIEEEEV 443 (581)
Q Consensus 371 ~~~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~-~~~~~~~~ 443 (581)
|+.++. .+.+| .|++||+.++......... ......+|+|||+.++.++. ++ .|+++|+.++.. ........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 998764 45555 5999999888766554432 24567899999999887764 44 477788777653 33333444
Q ss_pred eEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC---CcEEEEeCC
Q 008011 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~ 517 (581)
....+|+|||++++..+.++ .|.+||+.++ ... .+.... .. . ...++|+|++|+..+.+ +.|++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt~~~-~~--~-~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLTPGS-LD--E-SPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECCCCC-CC--C-CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998876543 5899999776 332 332211 11 1 22448999988776653 368888874
Q ss_pred CCceEEEeccCcCCEEEEEEcC
Q 008011 518 TGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~~p 539 (581)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 555666766677788888987
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.6e-14 Score=145.71 Aligned_cols=245 Identities=16% Similarity=0.279 Sum_probs=175.4
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC---CCeEEEEEEec--CCCeEEEEeCCCcEEEEeCCC--
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWFL--DGGGIFAGMTDKSICLWDLDG-- 390 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~~~-- 390 (581)
.+-..+.|+|-...+++++..-.|+|||.+.++.+..|..+ ...|+.+.+.. |...+++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34567888998889999988889999999999998888755 45688888765 566899999999999997521
Q ss_pred ---CeeE-eecc------CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee-e--eEecCCceEEEEECC-CCCEE
Q 008011 391 ---RELE-SWKG------QKTLRISDMAITDDGKRIISICREAAILLLDREANFE-R--WIEEEEVITSFSLSK-DNKYL 456 (581)
Q Consensus 391 ---~~~~-~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~--~~~~~~~i~~~~~sp-~~~~l 456 (581)
.++. .+.. ...+.-.-+.|.....+|++++.-..|++||...... . .......++++.-+. .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 1221 1111 1111113356666666777777788999999988762 2 223455567665543 57999
Q ss_pred EEEeeCCcEEEEEecCCCc--eeEEEeccccceeEEEeeeCCCCCc-EEEEEeCCCcEEEEeCCCCceE--EEeccCc--
Q 008011 457 LVNLINQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDSQVYIWHRYTGELV--LALAGHS-- 529 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg~I~iwd~~~~~~~--~~l~~h~-- 529 (581)
++|..||.|++||.+.... .+..+..|......+...+ .+.|- .|++|+.||.|++||++..... ..+..|.
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999987543 6777888877633343333 33332 6999999999999999874222 2333343
Q ss_pred C-CEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 530 G-SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 530 ~-~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+ .++++..|++. .++|+|+. +.|+||++...++.
T Consensus 1304 Gs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1304 GSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred CccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc
Confidence 3 59999999998 48999988 99999999765543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.1e-13 Score=138.21 Aligned_cols=234 Identities=16% Similarity=0.163 Sum_probs=155.9
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEecC
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.+.. ....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+||
T Consensus 176 ~~L~~~D~dG~----~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQ----NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCC----CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 35666666422 123345677889999999999999887643 359999999887644 3333445678999999
Q ss_pred CCeEEE-EeCCCcEEEE--eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-CCe--EEEEECCCCee-eeEecCCc
Q 008011 371 GGGIFA-GMTDKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKRIISICR-EAA--ILLLDREANFE-RWIEEEEV 443 (581)
Q Consensus 371 ~~~l~s-g~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~-~~~~~~~~ 443 (581)
++.|+. .+.+|...+| |+.++........ ........|+|||+.++..+. ++. |+.++..++.. ........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998874 5667765555 5555555544332 234567889999999887654 344 44445555442 22223334
Q ss_pred eEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC---cEEEEeCC
Q 008011 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~ 517 (581)
.....|+|||++++..+.++ .|.+||+.++ .. ..+..... .....|+|+|+.|+.++.++ .+++.+.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~~~----~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG-QV-TALTDTTR----DESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCCCC----ccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 55688999999999877654 5999999876 32 23322211 12334589999888777654 4666666
Q ss_pred CCceEEEeccCcCCEEEEEEcCC
Q 008011 518 TGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~~p~ 540 (581)
++.....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 56667777777788888999884
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.9e-13 Score=138.27 Aligned_cols=213 Identities=13% Similarity=0.169 Sum_probs=147.2
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEE---CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEe-eCCC--
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQEE-- 339 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~dg-- 339 (581)
+.+..+...+.+.+|||||+.|+..+ .+..+.+|++.++. ...+..+. +.+..+.|+|||+.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~---~~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFP---RHNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCC---CCcCCeEECCCCCEEEEEEcCCCCc
Confidence 34455677899999999999988764 24579999987643 22223333 334568999999988865 4444
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEE
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
.|.+||+.+++.... ..+...+....|+||++.|+..+.+ + .|+++|+.++........ ........|+|||+.+
T Consensus 268 ~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 268 NLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFM 345 (429)
T ss_pred EEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEE
Confidence 588999998876544 3444567889999999998877654 3 456667777655544322 2245678999999999
Q ss_pred EEEEcC---CeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCc---EEEEEecCCCceeEEEeccccc
Q 008011 417 ISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQE---IHLWSIESDPKLVSRYKGHKRA 486 (581)
Q Consensus 417 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~~~~~~~ 486 (581)
+..+.+ ..|.+||+.++....+..........|+|||++|+.++.++. +.++++.. .....+.++...
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~ 419 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQ 419 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCC
Confidence 887654 358899998877444433334457889999999999988764 66667654 344555555443
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.2e-13 Score=124.84 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=176.1
Q ss_pred CCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc---EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC-CC
Q 008011 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL-DG 390 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~-~~ 390 (581)
--..+|+|.+|++|...+|++.....|.||.....+ ..++++.|...|+++.|.|..+.|++++.|..-++|.. .+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999987654 67889999999999999999999999999999999998 44
Q ss_pred CeeEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee------eeEecCCceEEEEECCCCCEEEEEeeC
Q 008011 391 RELES--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE------RWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 391 ~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
++... .....+...+++.|+|.++.+++|+....|.+|-.+.... ........|++++|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 43221 2223344799999999999999999999999998877652 234567889999999999999999999
Q ss_pred CcEEEEEec-----CCC------------ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCc-eEEE
Q 008011 463 QEIHLWSIE-----SDP------------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLA 524 (581)
Q Consensus 463 ~~i~iwd~~-----~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~ 524 (581)
+..+++..- ..+ .+...+. ....+.- ...++|.|+.|+-.+.|+.+.+-|..... .+..
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh-~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVH-GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCcee-eeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999998752 110 1111222 1222233 33449999999999999999999976654 3333
Q ss_pred eccCcCCEEEEEEcCCCCcEEEEEECC
Q 008011 525 LAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 525 l~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+..-.-+..++.|-.+. .++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCC--ceeecCCC
Confidence 33334677777776554 45555555
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.4e-13 Score=136.11 Aligned_cols=233 Identities=11% Similarity=0.066 Sum_probs=161.2
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC---CCcEEEEECCCCcEEEEEecCCCeEEEEEEecC
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.+||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+....|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 46888887543 22345678889999999999999888764 468999999988754 34455566778899999
Q ss_pred CCeEE-EEeCCC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCe-eeeEecCCc
Q 008011 371 GGGIF-AGMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 371 ~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~-~~~~~~~~~ 443 (581)
|+.|+ +.+.++ .|++||+.++......... .......|+|||+.++..+. + ..|+++|..++. .........
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 99876 445555 4888899887776654433 35667899999999887764 3 368899988776 333334556
Q ss_pred eEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC------CcEEEE
Q 008011 444 ITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED------SQVYIW 514 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d------g~I~iw 514 (581)
+....|+|||++|+....+ ..|.+||+.+. . ...+... .. .....|+|+|+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~lt~~-~~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERILTSG-FL---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c-eEeccCC-CC---CCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 7778999999999887653 35788887654 2 2333221 11 2233458999988765543 358888
Q ss_pred eCCCCceEEEeccCcCCEEEEEEcCC
Q 008011 515 HRYTGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 515 d~~~~~~~~~l~~h~~~v~~l~~~p~ 540 (581)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8866544 4444 3455677788873
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.6e-13 Score=138.42 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=149.6
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEEC---CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEE-EeeCC
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQE 338 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~---dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~d 338 (581)
...+.+..|...+.+.+|||||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.|+ +.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEEecC
Confidence 344567778889999999999999988763 46899999976532 23445666778899999998875 45555
Q ss_pred Cc--EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCC
Q 008011 339 EA--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 339 g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
+. |.+||+.++... .+..+........|+||++.++..+. +| .|++||+.++........ ...+....|+|+|
T Consensus 268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG 345 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRG 345 (435)
T ss_pred CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCC
Confidence 54 777898887654 45555556677899999999887764 33 688889887766555433 2356678899999
Q ss_pred CEEEEEEcC---CeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeC------CcEEEEEecCC
Q 008011 414 KRIISICRE---AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------QEIHLWSIESD 473 (581)
Q Consensus 414 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~ 473 (581)
+.|+....+ ..|.+||+.++..........+....|+|||+.|+..+.+ ..++++|+.+.
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 999887654 3688899876664444444457789999999998876653 25777777654
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=3.8e-15 Score=140.65 Aligned_cols=228 Identities=14% Similarity=0.167 Sum_probs=190.8
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG 398 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 398 (581)
.-..+.++.+|.+++.|+..|.|..+|+.+++....+... ..|.++.|..+..+++++ ....++|||-.+.++.....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhh
Confidence 3467889999999999999999999999999988877544 468889998877776665 56789999998888887776
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCce
Q 008011 399 QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 399 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.. .|..+.|.|..-.|++++..|.+..-|+.++. ..+....+.+..++-+|-+..+-+|..+|+|.+|..... .+
T Consensus 209 ~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-eP 285 (545)
T KOG1272|consen 209 HI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EP 285 (545)
T ss_pred cC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-ch
Confidence 55 79999999999999999999999999999988 455566788899999999999999999999999999887 67
Q ss_pred eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008011 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
+..+..|.+++..+ ...++|.|++|.+.|..++|||++....+.++.. .-+...+++|..| +| .+|....|.|
T Consensus 286 LvKiLcH~g~V~si---Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~i 358 (545)
T KOG1272|consen 286 LVKILCHRGPVSSI---AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQI 358 (545)
T ss_pred HHHHHhcCCCcceE---EECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ce-eeecCCeeee
Confidence 77777888885544 4489999999999999999999998876666654 4567788999877 44 4455568999
Q ss_pred Ec
Q 008011 557 WG 558 (581)
Q Consensus 557 W~ 558 (581)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 95
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=5.1e-13 Score=121.85 Aligned_cols=247 Identities=19% Similarity=0.329 Sum_probs=176.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC--CeeeEEEeecCCC------------CCeEEEEeCCCC--CeEEE
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED--GQVSLKHRLSGHR------------KPVFTVSWSPND--HQLLT 334 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~~~~h~------------~~V~~l~~sp~~--~~l~s 334 (581)
..+-|.++.|...|.+||||..+|.|.++.-... ..+.....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4567899999999999999999999999975432 1334455565554 358889999865 46777
Q ss_pred eeCCCcEEEEECCCCcE-----------------------------------EEEE-ecCCCeEEEEEEecCCCeEEEEe
Q 008011 335 CGQEEAIRRWDVNSGEC-----------------------------------LHVY-EKTGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~sg~ 378 (581)
.+.|.+|++|.+..... .+.+ ..|...|.++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 88999999998753211 1111 2466778899999998888776
Q ss_pred CCCcEEEEeCCC----CeeEeeccCc----cccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-----eeeEe-----
Q 008011 379 TDKSICLWDLDG----RELESWKGQK----TLRISDMAITDD-GKRIISICREAAILLLDREANF-----ERWIE----- 439 (581)
Q Consensus 379 ~dg~i~iwd~~~----~~~~~~~~~~----~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~~~----- 439 (581)
.|=.|.+|+++- ..+....+.. ..-|++..|+|. .+.++-.+..|+|++.|++... .+++.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 567899999852 2233333222 124778889885 5678888999999999998543 11111
Q ss_pred --------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc------------ceeEEEeeeCCCCC
Q 008011 440 --------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARFVIRSCFGGFEQ 499 (581)
Q Consensus 440 --------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~ 499 (581)
--..|..+.|+++|+|+++-. --+|++||+....+++.++..|.. .++.---|.++-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 124578899999999999743 468999999877788888877653 22222223347788
Q ss_pred cEEEEEeCCCcEEEEeCCCC
Q 008011 500 AFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~ 519 (581)
.+++||+..+..++|+...|
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 89999999999999996554
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.6e-13 Score=136.29 Aligned_cols=202 Identities=18% Similarity=0.146 Sum_probs=143.4
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEE-EeeCCC-
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg- 339 (581)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|++|++.++.. . .+..+.+...+..|+|||+.|+ +.+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 44566678889999999999999987743 4699999976532 2 2333444456789999999775 445555
Q ss_pred -cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
.|.+||+.+++.. .+..+.......+|+||++.++.++. +| .|+++|+.++........ .......+|+|+|+.
T Consensus 272 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 272 PEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKK 349 (433)
T ss_pred ceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCE
Confidence 5999999888754 34445445567899999998887764 44 477778777665444322 224557899999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecC
Q 008011 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIES 472 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~ 472 (581)
++..+.++ .|.+||+.++......+........|+|||++++..+.+ +.|.++++..
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 98876543 699999988775444444455678999999998887763 3567777754
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=3.4e-13 Score=123.10 Aligned_cols=248 Identities=13% Similarity=0.162 Sum_probs=178.6
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIR 342 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~ 342 (581)
..++.++||.+.|+....-|...-+++.+.|.+++||--.+.+++-+ ........+++++.+.++...|++|-.+|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-hhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 35678899999999999999888899999999999997655443311 12233567799999999999999999999998
Q ss_pred EEECC----CCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeE-eeccCccccEEEEEEeeCCCEEE
Q 008011 343 RWDVN----SGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELE-SWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 343 vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~ 417 (581)
-+.+. .....+.+..|...+..+.|+.....+++.+.|..+.-.-.+.+... ...... ..+++.+.-. +..
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--YAF 169 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--EEE
Confidence 88653 34556667788899999999988899999999887754433332211 100000 1111111111 344
Q ss_pred EEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008011 418 SICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
.|...|.|....+.... ..+.+|...+++++|.|....|.+|..|..+.+||+-........+.+|...+..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~-- 247 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS-- 247 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh--
Confidence 55555665555444332 556678899999999999999999999999999999887677777888877644332
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCC
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.-+.-+.+++++.||.|.+|+.+.
T Consensus 248 -~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 248 -YAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -hhhhheeeeeccCCCeEEEEeccc
Confidence 234457789999999999999753
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1e-12 Score=134.43 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=137.3
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEE-EeeCCCc
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLL-TCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~-s~~~dg~ 340 (581)
...+..+...+.+.+|||||+.|+..+.+ ..|.+||+.++.. . .+....+.+.+.+|+|||+.|+ +.+.+|.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-R---VVANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-E---EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence 34455678889999999999999887643 3599999986532 2 2233344567899999999886 4577787
Q ss_pred EEEEE--CCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEE--eCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 341 IRRWD--VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLW--DLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 341 i~vwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
..||. +.++. ...+..+........|+|||+.++..+. +|...+| ++.++........ .......+|+|||++
T Consensus 264 ~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 264 SQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKL 341 (427)
T ss_pred ceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCE
Confidence 66665 44444 4455555555667889999998886654 4555555 4455544333222 123446789999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEec
Q 008011 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIE 471 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~ 471 (581)
++..+.++ .|++||+.++...............|+|||+.|+.++.++ .+.+.++.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 98877654 6999999887744444444457889999999998887654 24455553
No 228
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.3e-12 Score=123.34 Aligned_cols=274 Identities=15% Similarity=0.245 Sum_probs=175.5
Q ss_pred CcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEe-----eC-----CCcEE
Q 008011 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-----GQ-----EEAIR 342 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-----~~-----dg~i~ 342 (581)
..++..++|++|+++|.+. +..++|++..... ...+... ..+.++.|+|-+.+|.+- .. .-.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 3477888999999888765 6679999988654 2222221 268999999999988763 11 23578
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-----------
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD----------- 411 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~----------- 411 (581)
+|+++++.....+......-++..|+.|..+ ++--..+.+.+|++.+....... .+...|+.+.++|
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceEEEEc
Confidence 9999996555555443322267788877643 22223456777776542211111 1112344444443
Q ss_pred -----------------------------------------CCCE-EEEEEc-----------CCeEEEEECCCCe-eee
Q 008011 412 -----------------------------------------DGKR-IISICR-----------EAAILLLDREANF-ERW 437 (581)
Q Consensus 412 -----------------------------------------~~~~-l~~~~~-----------dg~i~i~d~~~~~-~~~ 437 (581)
-|.- |+.++. +.+++++++.+.. ..-
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~ 266 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP 266 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence 3331 111111 1245555555333 222
Q ss_pred EecCCceEEEEECCCCCEEEE--EeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC---CcEE
Q 008011 438 IEEEEVITSFSLSKDNKYLLV--NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVY 512 (581)
Q Consensus 438 ~~~~~~i~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~ 512 (581)
....++|.++.|+|+++-+++ |..-..+.|||++. .++..+...... .++++|.|++|+.++-+ |.|-
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df~egpRN-----~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDFPEGPRN-----TAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeCCCCCcc-----ceEECCCCCEEEEeecCCCCCceE
Confidence 344789999999999987766 44577899999987 455444333222 45669999999888764 6999
Q ss_pred EEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEEC------CCcEEEEcCCCcCc
Q 008011 513 IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD------DRTIRIWGLDQINM 564 (581)
Q Consensus 513 iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~iW~~~~~~~ 564 (581)
|||+.+.+++..+..-. -+-+.|+||| .+++|++. |+.++||++....+
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCcee
Confidence 99999999988887543 4567899999 67777764 78899999875443
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=6.9e-13 Score=123.15 Aligned_cols=262 Identities=18% Similarity=0.205 Sum_probs=188.0
Q ss_pred ccCcEEEEEEcCCCC--EEEEEECCCeEEEEEcccCCeee---EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 271 HSDEVWFLQFSHDGK--YLASSSKDQSAIIWEVKEDGQVS---LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 271 h~~~V~~l~~s~~g~--~lasgs~dg~i~iwd~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
-...|..++|..+++ .+..++.|..+..+.+....-.. ..........+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 446777888876665 55555567777777776442111 112344556677777654 34788889999999999
Q ss_pred CCCCc----EEEEEecCCCeEEEEEEecCCCe-EEEEeCC--CcEEEEeCCCCeeEeecc--Cc--------cccEEEEE
Q 008011 346 VNSGE----CLHVYEKTGVGLISCGWFLDGGG-IFAGMTD--KSICLWDLDGRELESWKG--QK--------TLRISDMA 408 (581)
Q Consensus 346 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d--g~i~iwd~~~~~~~~~~~--~~--------~~~v~~i~ 408 (581)
...+. ....+..+ .++..+.-.+.... +++|+.. ..+.+||+.+.+ ..|.. .. ...++++.
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccceeeeeeccce
Confidence 88443 22333333 35556665664444 5558888 889999997662 22221 11 12467888
Q ss_pred EeeC--CCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc
Q 008011 409 ITDD--GKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH 483 (581)
Q Consensus 409 ~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 483 (581)
|.+. ...|++++.-+.+++||.+.+. ..+.....+++++...|+++++++|..-+.+..||++.+.-....+.+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 9888 8899999999999999999766 4555668889999999999999999999999999999984445558888
Q ss_pred ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCC
Q 008011 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~ 540 (581)
.+.+..+.+ +|...++++++-|..|+|+|+.+.+++..... .+.++++-+.++
T Consensus 290 tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 887655555 78889999999999999999999777765442 345677776554
No 230
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=2.1e-13 Score=119.93 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=180.2
Q ss_pred HHHccccceeccCCCCCceeeccCCCCcccccccceeeec-cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeee
Q 008011 230 LDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILE-AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS 308 (581)
Q Consensus 230 ~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~ 308 (581)
+-+|....++.....+.+.+|.-. ..+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++....-
T Consensus 20 ~~fqa~~rL~sg~~~G~V~~w~lq-------t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~-- 89 (323)
T KOG0322|consen 20 VLFQANERLMSGLSVGIVKMWVLQ-------TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF-- 89 (323)
T ss_pred hhhccchhhhcccccceEEEEEee-------cCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce--
Confidence 345555567777777777777432 223344566 57789999999898 4578888999999999975322
Q ss_pred EEEeecCCCCCeEEEEeCCC-----CC---eEEEeeCCCc--EEEEECCCCcEEEEEe----cCCCeEEEEEEec-CCC-
Q 008011 309 LKHRLSGHRKPVFTVSWSPN-----DH---QLLTCGQEEA--IRRWDVNSGECLHVYE----KTGVGLISCGWFL-DGG- 372 (581)
Q Consensus 309 ~~~~~~~h~~~V~~l~~sp~-----~~---~l~s~~~dg~--i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~- 372 (581)
...|.-.++++-|.+. ++ .++..-..|. +.+-|......+.... ...+.+.+..|.. ++.
T Consensus 90 ----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 90 ----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred ----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 1223344555555542 11 1111111111 1222221111222111 1234555655433 233
Q ss_pred -eEEEEeCCCcEEEEeCCCCe----------eEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------e
Q 008011 373 -GIFAGMTDKSICLWDLDGRE----------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------E 435 (581)
Q Consensus 373 -~l~sg~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~ 435 (581)
.+++|..+|.|.+||+.++. ...-...+..+|.++.+.+....=++++.+..+..|++.... .
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 36678899999999998752 222233556689999999877777888888899999887543 2
Q ss_pred eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 436 RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
........+..+.+-||++.+++++.|+.|++|..++. .++..++.|... +.+..++|+..++|+++.|++|.+|+
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsag---vn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAG---VNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-Cchhhhhhhhcc---eeEEEeCCCCchhhhccCCceEEeee
Confidence 22334456889999999999999999999999999998 889999999876 44555599999999999999999998
Q ss_pred C
Q 008011 516 R 516 (581)
Q Consensus 516 ~ 516 (581)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=8.3e-14 Score=132.51 Aligned_cols=261 Identities=17% Similarity=0.249 Sum_probs=192.2
Q ss_pred eEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe-cCCCeEEEEEEec--CCCeEEEEeCCCcEE
Q 008011 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFL--DGGGIFAGMTDKSIC 384 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~sg~~dg~i~ 384 (581)
.....+..|.+.|..+.|+..|..|++++.|..|.+||+..++....+. +|...|....|.| +...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4446688999999999999999999999999999999999988776664 6777888888887 456799999999999
Q ss_pred EEeCC-CCee--EeeccCccccEEEEEEeeCC-CEEEEEEcCCeEEEEECCCCe--ee--eEe-cCC---ceEEEEECCC
Q 008011 385 LWDLD-GREL--ESWKGQKTLRISDMAITDDG-KRIISICREAAILLLDREANF--ER--WIE-EEE---VITSFSLSKD 452 (581)
Q Consensus 385 iwd~~-~~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~--~~~-~~~---~i~~~~~sp~ 452 (581)
+=.+. ++.+ ......|.++|..++.-|+. ..|.+++.|+.+.-+|++... .. ... ... ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 88773 2222 33445666789999999875 468899999999999998866 11 111 222 4678889995
Q ss_pred CC-EEEEEeeCCcEEEEEecCCCce-----eEEEeccc---cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC--C--
Q 008011 453 NK-YLLVNLINQEIHLWSIESDPKL-----VSRYKGHK---RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT--G-- 519 (581)
Q Consensus 453 ~~-~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~---~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~--~-- 519 (581)
.. .+++++.|..+++||.+.-.+. +..+..+. .....|.++.++.++.-+.+.-.|-.|++|.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 8999999999999998753221 22222221 2223355566676776677777788899996332 2
Q ss_pred --------ceEEE-eccCc--CCEEEEEE-cCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 520 --------ELVLA-LAGHS--GSVNCVSW-NPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 520 --------~~~~~-l~~h~--~~v~~l~~-~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+.. +++|. ..|.++-| -|.. .++++||+=|.|.||+-.++++++...
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhHHHHHhh
Confidence 22233 77884 45777775 5666 799999999999999999998876433
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.7e-12 Score=115.63 Aligned_cols=304 Identities=14% Similarity=0.205 Sum_probs=194.3
Q ss_pred cceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEE-EECCCeEEEEEcccCCeeeEEEeec
Q 008011 236 SCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLAS-SSKDQSAIIWEVKEDGQVSLKHRLS 314 (581)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~las-gs~dg~i~iwd~~~~~~~~~~~~~~ 314 (581)
.|.|+.......++..-+-..++..+.+.++.+.. -+.|..+.|+.|..+++. ...|+.|.+|++... .-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEec
Confidence 35555444433333222222233333344333332 467888999988876554 467889999999754 3445567
Q ss_pred CCCCCeEEEEeCCCCCe-EEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-------------
Q 008011 315 GHRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------------- 380 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------------- 380 (581)
....++.+++|||||+. |.+...+-.|.||.+.+.+.... ...+..+..++|+|||++.+..+.-
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 77888999999999955 56667789999999988775443 3334456778888888776655431
Q ss_pred -----------------------CcEEEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--
Q 008011 381 -----------------------KSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-- 434 (581)
Q Consensus 381 -----------------------g~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 434 (581)
..+.+||.-- .++. .....-.+..++|+|.++++++|+.|+.+++.+--+-+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 1234444311 1111 11222368899999999999999999988875421100
Q ss_pred -------------------------------eeeE-----------------------------------ecCCceEEEE
Q 008011 435 -------------------------------ERWI-----------------------------------EEEEVITSFS 448 (581)
Q Consensus 435 -------------------------------~~~~-----------------------------------~~~~~i~~~~ 448 (581)
..+. ...-.+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0000 0012255689
Q ss_pred ECCCCCEEEEEee--CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec
Q 008011 449 LSKDNKYLLVNLI--NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 449 ~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 526 (581)
|++|..++++-.. -+.+.+||++.. +....+. ...+ ++...|.|....++.+.....+++|...-...+ ...
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLi-Qk~p---iraf~WdP~~prL~vctg~srLY~W~psg~~~V-~vP 399 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNL-KLHAVLI-QKHP---IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVP 399 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhh-hhhhhhh-hccc---eeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ecC
Confidence 9999999888654 357899999875 3322222 2222 556666888888887777788999986543333 333
Q ss_pred cCcCCEEEEEEcCCCCcEEEEEECCCc
Q 008011 527 GHSGSVNCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 527 ~h~~~v~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
+..-.|..+.|+-+| ..++-++.|..
T Consensus 400 ~~GF~i~~l~W~~~g-~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPG-EFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCC-cEEEEEcCCce
Confidence 344679999999999 68888888864
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=1.6e-10 Score=114.86 Aligned_cols=263 Identities=16% Similarity=0.228 Sum_probs=174.2
Q ss_pred cCcEEEEEEcCCCCEEEEEEC----CCeEEEEEcccC-CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC-CCcEEEEE
Q 008011 272 SDEVWFLQFSHDGKYLASSSK----DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWD 345 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd 345 (581)
......++++|++++|.+... ++.|..|++... +.+..+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345567889999999998876 578999999876 667666666544455678999999999998875 88999999
Q ss_pred CCC-CcEEEE---Ee----------cCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCCCe--e---EeeccCccccEE
Q 008011 346 VNS-GECLHV---YE----------KTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDGRE--L---ESWKGQKTLRIS 405 (581)
Q Consensus 346 ~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~--~---~~~~~~~~~~v~ 405 (581)
+.. |..... +. .......++.++|+++++++... ...|.+|+++... + ...........+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 443322 21 12345788999999999888654 4479999986543 3 222334445789
Q ss_pred EEEEeeCCCEEEEEE-cCCeEEEEECC--CCeee---eEe-------cCCceEEEEECCCCCEEEEEee-CCcEEEEEec
Q 008011 406 DMAITDDGKRIISIC-REAAILLLDRE--ANFER---WIE-------EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIE 471 (581)
Q Consensus 406 ~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~---~~~-------~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~ 471 (581)
.++|+|+++++++.. .++.|.++++. ++... ... .......+.++|||++|+++.. .+.|.+|+++
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999887776 46789999888 33311 111 1125788999999999988765 5689999994
Q ss_pred CC-Cce--eEEEeccccceeEEEeeeCCCCCcEEEEEeC-CCcEEEEeC--CCCceEEEec-cCcCCEEEEEE
Q 008011 472 SD-PKL--VSRYKGHKRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHR--YTGELVLALA-GHSGSVNCVSW 537 (581)
Q Consensus 472 ~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~--~~~~~~~~l~-~h~~~v~~l~~ 537 (581)
.. ..+ +..+... ....- .+.++|+|++|+++.. ++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~--G~~Pr-~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTG--GKFPR-HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEES--SSSEE-EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCC--CCCcc-EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 32 122 2222221 11122 2333899999988875 568999875 5666544332 22345667665
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=132.19 Aligned_cols=140 Identities=18% Similarity=0.271 Sum_probs=116.1
Q ss_pred cCcEEEEEEcCCCC-EEEEEECCCeEEEEEccc--------------CCeee-----------EEEeecCCCCCeEEEEe
Q 008011 272 SDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKE--------------DGQVS-----------LKHRLSGHRKPVFTVSW 325 (581)
Q Consensus 272 ~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~--------------~~~~~-----------~~~~~~~h~~~V~~l~~ 325 (581)
+..|+|+.|-|.+. .++.+-.+|.++++|... +..+. +...+.--.+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999554 556667889999997531 11111 11112223457889999
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEE
Q 008011 326 SPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRIS 405 (581)
Q Consensus 326 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 405 (581)
+|||++||+.+.||.++|+|..+.+.+..++..-+...|++|+|||++|++|+.|.-|.||.+..+.+...-..|...|+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999988888887788999999999999999999999999999999999999999999999
Q ss_pred EEEEee
Q 008011 406 DMAITD 411 (581)
Q Consensus 406 ~i~~~~ 411 (581)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999985
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=3.2e-10 Score=112.68 Aligned_cols=277 Identities=13% Similarity=0.171 Sum_probs=179.7
Q ss_pred EEEEECC----CeEEEEEcc-cCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC----CCcEEEEECCCC--c--EEE
Q 008011 287 LASSSKD----QSAIIWEVK-EDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----EEAIRRWDVNSG--E--CLH 353 (581)
Q Consensus 287 lasgs~d----g~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----dg~i~vwd~~~~--~--~~~ 353 (581)
++.|+.. +.|.+|+++ ..+.+....... .......++++|++++|.++.. ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 689999983 345555555433 3344677899999999999877 468999988764 3 233
Q ss_pred EEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCC-CeeEee---c----------cCccccEEEEEEeeCCCEEEE
Q 008011 354 VYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG-RELESW---K----------GQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~~~---~----------~~~~~~v~~i~~~~~~~~l~~ 418 (581)
...........++.+|++++++++.. +|.|.++++.. +.+... . ........++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334455667899999999998875 88999999975 333222 1 122346789999999998888
Q ss_pred EEc-CCeEEEEECCCCe--e-----eeEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCC-c--eeEEEecc---
Q 008011 419 ICR-EAAILLLDREANF--E-----RWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDP-K--LVSRYKGH--- 483 (581)
Q Consensus 419 ~~~-dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~-~--~~~~~~~~--- 483 (581)
... ...|.+|++.... . ...........+.|+|+++++++... ++.|.+|++.... . .+......
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 754 4579999987654 1 12345566889999999999877665 7789999998321 2 12222211
Q ss_pred -ccceeEEEeeeCCCCCcEEEEEeC-CCcEEEEeCC--CCce--EEEeccCcCCEEEEEEcCCCCcEEEEE-ECCCcEEE
Q 008011 484 -KRARFVIRSCFGGFEQAFIASGSE-DSQVYIWHRY--TGEL--VLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRI 556 (581)
Q Consensus 484 -~~~~~~i~~~~~~~~~~~l~sgs~-dg~I~iwd~~--~~~~--~~~l~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~i 556 (581)
..... ...+..+|+|++|+++.. .+.|.+|++. ++++ +..+.........++++|+|. +|+++ -.++.|.+
T Consensus 241 ~~~~~~-~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 241 FTGENA-PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTVSV 318 (345)
T ss_dssp SCSSSS-EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEEEE
T ss_pred ccccCC-ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeEEE
Confidence 11111 222333899999887765 5689999983 3433 333433344589999999995 55555 47789999
Q ss_pred EcCC--CcCccc
Q 008011 557 WGLD--QINMKH 566 (581)
Q Consensus 557 W~~~--~~~~~~ 566 (581)
|+++ ++.+..
T Consensus 319 f~~d~~tG~l~~ 330 (345)
T PF10282_consen 319 FDIDPDTGKLTP 330 (345)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeCCCCcEEE
Confidence 9874 555543
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=1.4e-11 Score=111.66 Aligned_cols=235 Identities=15% Similarity=0.230 Sum_probs=156.4
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCC--CeEEEEEEecCCCeEEEEeCC------CcEEEEeCCC-
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTG--VGLISCGWFLDGGGIFAGMTD------KSICLWDLDG- 390 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~d------g~i~iwd~~~- 390 (581)
...++|+.|..-++++..+| .+||+.+--+.......+. ..+.-+-|- .+-..++|+.+ ..|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccC
Confidence 44599999988888877665 8999987533222111121 222223232 12233344443 4799999433
Q ss_pred CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeE---ecCCceEEEEECCCCCEEEE-EeeCCc
Q 008011 391 RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWI---EEEEVITSFSLSKDNKYLLV-NLINQE 464 (581)
Q Consensus 391 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~---~~~~~i~~~~~sp~~~~l~~-~~~d~~ 464 (581)
..+.... ...+|.++.+.++ .+++ -..+.|++|...+.. ...+ ..+....+++-+.+..+|+. |..-|.
T Consensus 86 ~~i~el~--f~~~I~~V~l~r~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS--FNSEIKAVKLRRD--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE--eccceeeEEEcCC--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 3333322 2348999999876 3443 357889999988543 2222 22333444443334444554 344689
Q ss_pred EEEEEecCCCc-eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCc-EEEEeCCCCceEEEecc--CcCCEEEEEEcCC
Q 008011 465 IHLWSIESDPK-LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQ-VYIWHRYTGELVLALAG--HSGSVNCVSWNPA 540 (581)
Q Consensus 465 i~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~-I~iwd~~~~~~~~~l~~--h~~~v~~l~~~p~ 540 (581)
|+|-|+..... ....+..|... |.+.....+|..+||+|..|+ |+|||..+|+.+..++- ....|.+++|+|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~---Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSD---IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCc---eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 99999987532 34677888887 555555889999999999995 79999999999998874 2467999999999
Q ss_pred CCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 541 NLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 541 ~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
. .+|+.+|+-|+|+|+.+......
T Consensus 238 ~-s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 238 S-SWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred c-cEEEEEcCCCeEEEEEeecCCCC
Confidence 9 79999999999999999875533
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=3.7e-12 Score=114.65 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=109.9
Q ss_pred EEEEeCCCCCeEEEeeC----------CCcEEEEECCC-CcEEEEEec-CCCeEEEEEEecCCCeEEEE--eCCCcEEEE
Q 008011 321 FTVSWSPNDHQLLTCGQ----------EEAIRRWDVNS-GECLHVYEK-TGVGLISCGWFLDGGGIFAG--MTDKSICLW 386 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg--~~dg~i~iw 386 (581)
..+.|+|+|.+|+.-.. -|...+|.++. +.....+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 36789999988765433 13355555522 233444433 34579999999999997654 457799999
Q ss_pred eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEee--
Q 008011 387 DLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI-- 461 (581)
Q Consensus 387 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-- 461 (581)
|++...+..+. ...++.+.|+|+|+++++++. .|.|.+||.++...........++.++|+|||+++++++.
T Consensus 89 d~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCcccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 99865555443 346789999999999999874 4679999999877444444556899999999999999875
Q ss_pred ----CCcEEEEEecC
Q 008011 462 ----NQEIHLWSIES 472 (581)
Q Consensus 462 ----d~~i~iwd~~~ 472 (581)
|+.++||+...
T Consensus 166 r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQG 180 (194)
T ss_pred ceeccccEEEEEecC
Confidence 67889999865
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=4.3e-12 Score=114.18 Aligned_cols=152 Identities=15% Similarity=0.286 Sum_probs=110.8
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEEcccCCeeeEEEeec-CCCCCeEEEEeCCCCCeEEEe--eCCCcEE
Q 008011 276 WFLQFSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLS-GHRKPVFTVSWSPNDHQLLTC--GQEEAIR 342 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs~----------dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l~s~--~~dg~i~ 342 (581)
..+.|+|+|++|+.-.. -+...||.++..+.. ...+. ...++|.+++|+|+|+.|+++ ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 35779999997765332 234666666433321 22222 234579999999999987655 3567999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC---CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEE
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
+||++ ++.+..+. ...+..+.|+|+|+++++++.+ |.|.+||.+..+......+. .++.++|+|+|++++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATA 161 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEE
Confidence 99996 66666654 4567889999999999998754 67999999977766555443 58999999999999998
Q ss_pred Ec------CCeEEEEECCCCe
Q 008011 420 CR------EAAILLLDREANF 434 (581)
Q Consensus 420 ~~------dg~i~i~d~~~~~ 434 (581)
.. |+.++||+.....
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EeccceeccccEEEEEecCeE
Confidence 75 6788889876544
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=2e-11 Score=125.60 Aligned_cols=231 Identities=17% Similarity=0.175 Sum_probs=155.7
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEecC
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLD 370 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (581)
..|.++|..... ...+..+...+...+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.+++|+||
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 457777775322 23445566778999999999999887654 4799999998865433 344455667899999
Q ss_pred CCeEEEE-eCCC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCe-eeeEecCCc
Q 008011 371 GGGIFAG-MTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANF-ERWIEEEEV 443 (581)
Q Consensus 371 ~~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~ 443 (581)
++.|+.. +.++ .|++||+.++......... .......|+|+|+.|+..+.. + .|+++|+.++. .........
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 9987654 4444 5999999877665554432 234567899999988876643 2 68888988766 333445566
Q ss_pred eEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC---cEEEEeCC
Q 008011 444 ITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRY 517 (581)
Q Consensus 444 i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~ 517 (581)
.....|+|++++++.++.++ .|.+||+.++ . ...+...... ....++|++++|+..+.++ .+++.+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~----~~p~~spdg~~l~~~~~~~~~~~l~~~~~- 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDTGLD----ESPSFAPNGRMILYATTRGGRGVLGLVST- 396 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCC-C-eEEccCCCCC----CCceECCCCCEEEEEEeCCCcEEEEEEEC-
Confidence 77889999999999988776 7888998774 2 2233222111 1223488998887777654 4555553
Q ss_pred CCceEEEeccCcCCEEEEEE
Q 008011 518 TGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~ 537 (581)
+++....+..+.+.+..++|
T Consensus 397 ~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CCceeeECCCCCCCcCCCCC
Confidence 45555656555555655555
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2e-11 Score=125.37 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=153.4
Q ss_pred eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC-C--cEEEEECCCCcEEEEEecCCCeEEEEEEecCC
Q 008011 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (581)
.+.++|.+..+. ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ...........|+||+
T Consensus 199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 566667653321 2345567788999999999998876543 2 588999988875332 2223334578999999
Q ss_pred CeEEE-EeCCCc--EEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCeeeeE-ecCCce
Q 008011 372 GGIFA-GMTDKS--ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANFERWI-EEEEVI 444 (581)
Q Consensus 372 ~~l~s-g~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~-~~~~~i 444 (581)
+.|+. .+.+|. |+++|+.+++........ ......+|+|||+.++..+. + ..|+++|+.++..... ......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98875 455664 888899887766554432 35677899999998877654 3 3577788877663322 233334
Q ss_pred EEEEECCCCCEEEEEeeC-C--cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC-C--cEEEEeCCC
Q 008011 445 TSFSLSKDNKYLLVNLIN-Q--EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-S--QVYIWHRYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-g--~I~iwd~~~ 518 (581)
...+|+|||++++..+.+ + .|.++|+.++ .. ..+...... . ...++|+|+.|+..+.+ | .+++++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~~d---~-~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTRLD---E-SPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 567999999998887653 3 4555677665 22 233222111 1 11348899887765543 3 4778886 5
Q ss_pred CceEEEeccCcCCEEEEEEcC
Q 008011 519 GELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 519 ~~~~~~l~~h~~~v~~l~~~p 539 (581)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777777777788889987
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=6.4e-12 Score=122.15 Aligned_cols=259 Identities=14% Similarity=0.127 Sum_probs=176.1
Q ss_pred CCCCCeEEEEeCCCCCeE-EEeeCCCcEEEEECCCCcEEEEEecC-CC-eEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008011 315 GHRKPVFTVSWSPNDHQL-LTCGQEEAIRRWDVNSGECLHVYEKT-GV-GLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 391 (581)
.|...-+.|..+|||+|+ ++|...-.|++||+..-.. .|..| .. .|.-.-.+.|-..++.-..|.+|-+...-+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 467778899999999985 5666788999999976543 34444 23 3333333444455666667777776554332
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEE
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWS 469 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd 469 (581)
... ..... .-.+++++.-..-|++++....|+-+++..+. ..+....+.++++..++-..+|++|+.+|.|.+||
T Consensus 127 hy~-~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYR-TRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee-eecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 221 11111 34567777655567777778889999999988 33444558899999999999999999999999999
Q ss_pred ecCCCceeEEEecccc--------ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cCcCCEEEEEEcCC
Q 008011 470 IESDPKLVSRYKGHKR--------ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GHSGSVNCVSWNPA 540 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~~p~ 540 (581)
.++. ..+..+..... ....++...++.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.
T Consensus 204 pR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 204 PRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred chhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9986 44444432221 11124444557779999999999999999999988765433 33568999999876
Q ss_pred CC-cEEEEEECCCcEEEEcCCCcCcccc----cCCCceEEecCCC
Q 008011 541 NL-HMLASASDDRTIRIWGLDQINMKHR----DQSNGIVHHCNGR 580 (581)
Q Consensus 541 ~~-~~l~s~s~Dg~I~iW~~~~~~~~~~----~~~~~~~~~~~G~ 580 (581)
+. ..++|. +...++|||-.+++.... ...+.+.+.|++.
T Consensus 283 ~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 283 DQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred CCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 32 355554 457899999998886532 2244455555543
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-11 Score=120.29 Aligned_cols=277 Identities=16% Similarity=0.241 Sum_probs=180.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC-----------CcEEE
Q 008011 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----------EAIRR 343 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----------g~i~v 343 (581)
=+-+.|||-|.||+|-..-| |.+|--.+ +..++.+ .|. .|..+.|||+.+||+|-+.. ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 46789999999999998777 89996432 2333333 254 48999999999999997531 46999
Q ss_pred EECCCCcEEEEEecC--CCeEE-EEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 344 WDVNSGECLHVYEKT--GVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 344 wd~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
||+.+|...+.|... ...++ -..|+.|+++++.-.. ..|.||+...-.+.......-..|....|+|.++.|+.=.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999988888763 22333 3579999999887665 5688888766554444444444666777777666555322
Q ss_pred cC----------------Ce-----------------------------------------EEEEECCCCe--eeeEecC
Q 008011 421 RE----------------AA-----------------------------------------ILLLDREANF--ERWIEEE 441 (581)
Q Consensus 421 ~d----------------g~-----------------------------------------i~i~d~~~~~--~~~~~~~ 441 (581)
.. .. +-|+.++... .......
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11 00 1111111111 1112334
Q ss_pred CceEEEEECCCCCEEEEEee---CCcEEEEEecCCC---ceeEEEeccccceeEEEeeeCCCCCcEEEEEe---CCCcEE
Q 008011 442 EVITSFSLSKDNKYLLVNLI---NQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFEQAFIASGS---EDSQVY 512 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs---~dg~I~ 512 (581)
..|..++|.|.|+.+++-+. ..++.+|.+.+.. .++..+... ....++++|.|++++.+. ..|.+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceE
Confidence 56788999999998877654 3578899887421 233333321 234567799999987764 578999
Q ss_pred EEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEEC------CCcEEEEcCCCcCc
Q 008011 513 IWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASD------DRTIRIWGLDQINM 564 (581)
Q Consensus 513 iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~------Dg~I~iW~~~~~~~ 564 (581)
++|.....+..+-..-....+.+.|.|.| ++++|++. |.--+||++....+
T Consensus 521 F~D~~~a~~k~~~~~eh~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEHFAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EEecchhhhhhccCccccccccceECCCC-CEEEEeeehhhhccccceEEEEeecHHH
Confidence 99987533322222222346789999999 78888875 55677888765443
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4e-11 Score=123.50 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=154.9
Q ss_pred eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEecCC
Q 008011 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG 371 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (581)
.|.++|.+... ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 46677776432 23345567789999999999999877644 368999999887544 33333445578999999
Q ss_pred CeEEE-EeCCC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc-C--CeEEEEECCCCeee-eEecCCce
Q 008011 372 GGIFA-GMTDK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR-E--AAILLLDREANFER-WIEEEEVI 444 (581)
Q Consensus 372 ~~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~-~~~~~~~i 444 (581)
+.|+. ...+| .|++||+.++......... .......|+|||+.++..+. + ..|+++|+.++... ........
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98874 44454 6888899887766554332 34566789999998877664 3 36888888776632 22223334
Q ss_pred EEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC---CcEEEEeCCC
Q 008011 445 TSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~ 518 (581)
....|+|||++++....++ .|.+||+.++ .. ..+...... . ...++|+|+.++..+.+ ..|++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~~~~~---~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTDTSLD---E-SPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCC-CE-EEccCCCCC---C-CceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 5678999999998876533 5788898875 22 333221111 1 12348899988776654 357777874
Q ss_pred CceEEEeccCcCCEEEEEEcCC
Q 008011 519 GELVLALAGHSGSVNCVSWNPA 540 (581)
Q Consensus 519 ~~~~~~l~~h~~~v~~l~~~p~ 540 (581)
+.....+..+.+.+...+|+|-
T Consensus 407 g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEECcCCCCCcCCCccCCC
Confidence 4555566666677788888873
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=3.8e-10 Score=102.53 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=155.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEE-eeCC------CcEEEEEC
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQE------EAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~d------g~i~vwd~ 346 (581)
...+++|+.|..-++.|..+| .+||+.+.- +.......+.+.+.-+..---.++|+- ||.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 344599999999999998777 899998642 221222222222211111112345443 3332 36999997
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC--eeEeeccCc-cccEEEEEEeeCCCEEEE-EEcC
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR--ELESWKGQK-TLRISDMAITDDGKRIIS-ICRE 422 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~-~~~v~~i~~~~~~~~l~~-~~~d 422 (581)
...+++.++.. ..+|.++.+.++ ++++. ..+.|++|..... .+..+.... .....+++-+.+...|+. |-.-
T Consensus 83 ~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 66777777744 458899988754 55554 4578999988632 222222211 112333333333334443 2356
Q ss_pred CeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCc-EEEEEecCCCceeEEEeccccceeEEEeeeCCC
Q 008011 423 AAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQE-IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 423 g~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
|.|.+.|+.... .....|...|.|++.+.+|..+|+++..|+ |+|||..++ ..+..+.-.... ..+.+..++|
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~-A~iy~iaFSp 236 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVDR-ADIYCIAFSP 236 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCch-heEEEEEeCC
Confidence 899999987765 456689999999999999999999999997 799999998 555555533332 2355666699
Q ss_pred CCcEEEEEeCCCcEEEEeCCC
Q 008011 498 EQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~ 518 (581)
+..+|+++|+.|+++||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998764
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=7.8e-12 Score=124.31 Aligned_cols=278 Identities=21% Similarity=0.293 Sum_probs=205.6
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCC------------eeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG------------QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
.....|++|+....|+|+|+.||.++|..+.+.. .+....++.||...|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456799999999999999999999999876431 2334567889999999999999999999999999
Q ss_pred cEEEEECCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEE
Q 008011 340 AIRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 417 (581)
.|.||-+-.|.-...+. .....|.+++|..||..+.....||.|.+=.+++..+-...... .....+.|++|.+.++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg-~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG-QLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch-heccceeecccHHHHH
Confidence 99999987775433222 34567899999999999999999999999888776553322111 1456789999999999
Q ss_pred EEEcCCeEEEEECCCCeee-------------eEecCCceEEEEE--------CCCCCEEEEEeeCCcEEEEEecCCCce
Q 008011 418 SICREAAILLLDREANFER-------------WIEEEEVITSFSL--------SKDNKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~~~-------------~~~~~~~i~~~~~--------sp~~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.+-.+|.+.+||....... +...+..|..+.| -||...|+++..+|.+.|..-.+.+.+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9989999999998765410 1122333555655 358889999999999999877766555
Q ss_pred eEEEeccccceeEEEeeeCCCCCcEEEEEeCCC---------cEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEE
Q 008011 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---------QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLAS 547 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---------~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s 547 (581)
+-.-.+. .+.-.-|+++|.+++.++.+. .|.+|. .-|+.+.+++.....|++++|-..| -.++.
T Consensus 253 vv~dtgm-----~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g-LriA~ 325 (1189)
T KOG2041|consen 253 VVVDTGM-----KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG-LRIAI 325 (1189)
T ss_pred eEEeccc-----EeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc-eEEEE
Confidence 5443331 233445589999999988642 455555 4688888998888999999998776 33433
Q ss_pred EECCCcEEEEc
Q 008011 548 ASDDRTIRIWG 558 (581)
Q Consensus 548 ~s~Dg~I~iW~ 558 (581)
+ -|+.|.+=+
T Consensus 326 A-vdsfiyfan 335 (1189)
T KOG2041|consen 326 A-VDSFIYFAN 335 (1189)
T ss_pred E-ecceEEEEe
Confidence 3 345555433
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=2.5e-11 Score=124.89 Aligned_cols=193 Identities=17% Similarity=0.177 Sum_probs=139.0
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEE-eeCCC-
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg- 339 (581)
.+.+..+...+.+.+|+|||++||.++.+ ..|++|++.++... .+..+...+.+++|+||++.|+. .+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 34555677789999999999999987644 47999999865321 23345556778999999987764 44444
Q ss_pred -cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
.|.+||+.++.... +..+........|+||++.|+..+.. + .|+++|+.++........ ...+....|+|+|++
T Consensus 258 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCE
Confidence 58899998876543 33444445567899999988776543 3 688888887665544433 235678899999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCC
Q 008011 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 463 (581)
++.++.++ .|.+||+.++...............|+|++++|+..+.++
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 99988876 8999999886644444334455678999999998887754
No 247
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=8.5e-14 Score=141.03 Aligned_cols=285 Identities=13% Similarity=0.167 Sum_probs=187.5
Q ss_pred chHHHHHHHHHHHccccceeccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEE
Q 008011 220 KRLEHLVEKALDVQRDSCLFHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIW 299 (581)
Q Consensus 220 ~rl~~l~~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iw 299 (581)
..|..++.+.+..|+..|..+...-..++||..|.|.....-.+....+.+..+. .-.+++-+. +-.+..|... ||
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~--rel~~~y~g-V~g~~~dr~~-IF 1088 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGT--RELQSFYSG-VHGNRRDRQF-IF 1088 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccc--hhhcCcccc-cccCcccchh-hH
Confidence 3789999999999999999999999999999999997633222221111111110 001111110 1111222221 11
Q ss_pred EcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC
Q 008011 300 EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 300 d~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
..+.....+..|+...+|++|+-+.++|+.|+..|.|+++++.+|........|...++-+.-+.||..+++.+.
T Consensus 1089 -----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1089 -----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred -----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc
Confidence 123445667889999999999999999999999999999999999999999999999999998889988877654
Q ss_pred CC--cEEEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEE
Q 008011 380 DK--SICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYL 456 (581)
Q Consensus 380 dg--~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l 456 (581)
-. -..+|++.. +...... ..-.++ .|+..-..-
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf----~ed~~v----------------------------------------kFsn~~q~r 1199 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSF----DEDKAV----------------------------------------KFSNSLQFR 1199 (1516)
T ss_pred ccCchHHHhccccccCccccc----ccccee----------------------------------------ehhhhHHHH
Confidence 33 466888753 1111100 012223 333333334
Q ss_pred EEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEE
Q 008011 457 LVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVS 536 (581)
Q Consensus 457 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~ 536 (581)
++|+......+||+.+...+..-+.+.....+.-.+..++|+..+|+ +|| .+||++..+.++.|...+..+ .-.
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~ 1273 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGG 1273 (1516)
T ss_pred HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-ccc
Confidence 44555566778888887444444554444444445666688888876 345 689998888777776554222 235
Q ss_pred EcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 537 WNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
|||.| ..++.-+. |||+++.++.+..+
T Consensus 1274 FHP~g-~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1274 FHPSG-NEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred ccCCC-ceEEeech-----hhhhHHHHHHhcCc
Confidence 99999 56666655 99999998887644
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=1.9e-10 Score=114.08 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=152.8
Q ss_pred EEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeC
Q 008011 333 LTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDD 412 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 412 (581)
++-..++.|.|.|..+.+.+..+.........+.++||++++++++.||.|.++|+.+.+......... ....+++++|
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~D 88 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPD 88 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--T
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCC
Confidence 455668999999999999999998766555667899999999999999999999998877665554443 6788999999
Q ss_pred CCEEEEEE-cCCeEEEEECCCCe-eeeEe--------cCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEe
Q 008011 413 GKRIISIC-REAAILLLDREANF-ERWIE--------EEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 413 ~~~l~~~~-~dg~i~i~d~~~~~-~~~~~--------~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~ 481 (581)
|+++++++ ..+.+.++|.++.+ ...+. ....+..+..+|....++++-. .+.|.+.|......+.....
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99998775 68999999999877 32222 2345778888898886666655 47888888776533332222
Q ss_pred ccccceeEEEeeeCCCCCcEEEEE-eCCCcEEEEeCCCCceEEEe-----------------------------------
Q 008011 482 GHKRARFVIRSCFGGFEQAFIASG-SEDSQVYIWHRYTGELVLAL----------------------------------- 525 (581)
Q Consensus 482 ~~~~~~~~i~~~~~~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~l----------------------------------- 525 (581)
..... ..-..++|++++++.+ ..++.|-++|..+++.+..+
T Consensus 169 ~~g~~---~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 169 KVGRF---PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp E--TT---EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred ccccc---ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 22221 1123448888876654 45667888887766443322
Q ss_pred --------------------ccCcCCEEEEEEcCCCCcEEEEE----ECCCcEEEEcCCCcCcccccC------CCceEE
Q 008011 526 --------------------AGHSGSVNCVSWNPANLHMLASA----SDDRTIRIWGLDQINMKHRDQ------SNGIVH 575 (581)
Q Consensus 526 --------------------~~h~~~v~~l~~~p~~~~~l~s~----s~Dg~I~iW~~~~~~~~~~~~------~~~~~~ 575 (581)
....+. .-+..||+++ ++... ...++|.++|.++.+...... .-++-|
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCc-cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 111112 4566788884 55555 556899999999987654322 446777
Q ss_pred ecCCC
Q 008011 576 HCNGR 580 (581)
Q Consensus 576 ~~~G~ 580 (581)
++||+
T Consensus 324 ~~dG~ 328 (369)
T PF02239_consen 324 NPDGK 328 (369)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 77775
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7.3e-11 Score=121.60 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=139.1
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEE-eeCCC-
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEE- 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg- 339 (581)
.+.+..+...+...+|||||+.|+..+.+ ..|.+|++.++.. . .+....+.+....|+|||+.|+. ...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 34555677889999999999999877644 3688999976532 2 22333344567899999998874 44455
Q ss_pred -cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 340 -AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
.|.+||+.+++... +..+........|+||++.++..+. +| .|+++|+.+++........ .......|+|+|+.
T Consensus 267 ~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 58888998877543 4445555667889999998876654 33 6888888776655443222 23445789999999
Q ss_pred EEEEEcCC---eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeC-C--cEEEEEecC
Q 008011 416 IISICREA---AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN-Q--EIHLWSIES 472 (581)
Q Consensus 416 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~ 472 (581)
++....++ .|.++|+.++...............|+|||+.++..+.+ + .+.++++..
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 98876543 588999988774444433334467899999999887754 2 466666644
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=2.2e-10 Score=110.26 Aligned_cols=279 Identities=14% Similarity=0.261 Sum_probs=189.8
Q ss_pred cCcEEEEEEcCCCCEEEEEECC---------------CeEEEEEcccCCeeeEEEeecCCCCC--eE-EEEeCCCCCeEE
Q 008011 272 SDEVWFLQFSHDGKYLASSSKD---------------QSAIIWEVKEDGQVSLKHRLSGHRKP--VF-TVSWSPNDHQLL 333 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~d---------------g~i~iwd~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~l~ 333 (581)
...|..+.|||+++||.|=+.. +.+.+||+.++ .....+..-..+ .+ -+.|+-+++++|
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhh
Confidence 3468899999999999986543 34999999876 455555555555 55 688898888876
Q ss_pred EeeCCCcEEEEECCCCcEE-EEEecC-CCeEEEEEEecCCC--eEEE-----EeCCCcEEEEeCCCCeeEeeccCccccE
Q 008011 334 TCGQEEAIRRWDVNSGECL-HVYEKT-GVGLISCGWFLDGG--GIFA-----GMTDKSICLWDLDGRELESWKGQKTLRI 404 (581)
Q Consensus 334 s~~~dg~i~vwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~--~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~v 404 (581)
-.. ...+.|+++ ++... ..+..- ...+....|+|.++ .|+. ++..+.+++|.+..+............-
T Consensus 148 Rvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~ 225 (561)
T COG5354 148 RVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSG 225 (561)
T ss_pred hhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecc
Confidence 553 347999997 43321 111111 35677888888533 3443 4567889999997655555444444345
Q ss_pred EEEEEeeCCCEEEEEE-----------cCCeEEEEECCCCeeeeE-ecCCceEEEEECCCCCEEEEEe--eCCcEEEEEe
Q 008011 405 SDMAITDDGKRIISIC-----------REAAILLLDREANFERWI-EEEEVITSFSLSKDNKYLLVNL--INQEIHLWSI 470 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~ 470 (581)
..+.|.+.|+++++-. ....++++++........ ...++|..++|.|+++.+++.+ .+..+.++|+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence 5688889998776532 135688888886654433 6689999999999998877765 5788999999
Q ss_pred cCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC---CcEEEEeCCCCceEE-EeccCcCCEEEEEEcCCCCcEEE
Q 008011 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED---SQVYIWHRYTGELVL-ALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d---g~I~iwd~~~~~~~~-~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
+.. +...+...... ..+++|.+++++.++-| |.|-+||........ .+.+. ...-+.|+|++ .++.
T Consensus 306 r~N--l~~~~Pe~~rN-----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~ 375 (561)
T COG5354 306 RGN--LRFYFPEQKRN-----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYD 375 (561)
T ss_pred ccc--eEEecCCcccc-----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEE
Confidence 885 33333222221 23448999999997765 589999976554433 55543 23456799999 5666
Q ss_pred EEE------CCCcEEEEcCCCcCcc
Q 008011 547 SAS------DDRTIRIWGLDQINMK 565 (581)
Q Consensus 547 s~s------~Dg~I~iW~~~~~~~~ 565 (581)
+.. .|..|+||++...+.-
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhh
Confidence 654 4788999999876544
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1e-10 Score=121.71 Aligned_cols=151 Identities=21% Similarity=0.341 Sum_probs=133.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE-EEe
Q 008011 278 LQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH-VYE 356 (581)
Q Consensus 278 l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~ 356 (581)
+-++++.-++++|+.-+.|.+|+....+ ....+.+|.+.|.++.|+.||.++++++.|.++++|++++.+... ..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccC---CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 3456777799999999999999997432 223689999999999999999999999999999999999988766 666
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC
Q 008011 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREAN 433 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 433 (581)
+|...++.++++|+ .+++++.|-+.++|+.+..++..+..+....+..++..++...+++++.|+.+++||+.+.
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 89999999999988 9999999999999999888888777777778999999999999999999999999997653
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.1e-10 Score=119.76 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=135.8
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECC-C--eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEE-eeCCCc-
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKD-Q--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLT-CGQEEA- 340 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s-~~~dg~- 340 (581)
+.+..+...+.+.+|||||+.|+..+.+ + .|++||+.++.. ..+..+ .+......|+|||+.|+. .+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 3445566788899999999998876543 3 588888876532 222222 233457899999998765 455664
Q ss_pred -EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-CC--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEE
Q 008011 341 -IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DK--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRI 416 (581)
Q Consensus 341 -i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 416 (581)
|.+||+.+++.. .+..+........|+||++.++..+. ++ .|+++|+.+++........ ......+|+|||+.+
T Consensus 287 ~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l 364 (448)
T PRK04792 287 EIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEE
Confidence 778888887654 34444455677899999998876654 33 5777788776655443221 123456899999998
Q ss_pred EEEEcC-C--eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEecCCCceeEEEec
Q 008011 417 ISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 417 ~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~ 482 (581)
+..+.+ + .|.++|+.++...............|+|||+.++..+.++ .+++++... .....+..
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--~~~~~l~~ 434 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--RFKARLPA 434 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--CceEECcC
Confidence 877653 3 5677888877643333222233558999999988766543 366666643 33444433
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=4.7e-09 Score=101.72 Aligned_cols=265 Identities=9% Similarity=0.045 Sum_probs=163.5
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC----------CCcEEEEECCCCcEEEEEecCCC---
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTGV--- 360 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~--- 360 (581)
++|.+.|..+. +....+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 78999999875 3444444333332 34 8999999887765 67899999999999988875322
Q ss_pred ----eEEEEEEecCCCeEEEEe-C-CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe
Q 008011 361 ----GLISCGWFLDGGGIFAGM-T-DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF 434 (581)
Q Consensus 361 ----~v~~~~~~~~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.....+++|||+++++.. . +..|.+.|+.+++......... ...-...+++. .+ +-|.||......+...-
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCC
Confidence 234678899999999876 3 6899999999887765443321 11111111111 11 22344444433222211
Q ss_pred ------eeeEec-CCce-EEEEECC-CCCEEEEEeeCCcEEEEEecCCC----ceeEEEecccc----ceeEEEeeeCCC
Q 008011 435 ------ERWIEE-EEVI-TSFSLSK-DNKYLLVNLINQEIHLWSIESDP----KLVSRYKGHKR----ARFVIRSCFGGF 497 (581)
Q Consensus 435 ------~~~~~~-~~~i-~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~ 497 (581)
...+.. ..++ ..-.|.+ +|+++.+... |.|++.|+.... .....+..... ....+.....++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111111 0000 0003455 8888888776 999999975431 22222211100 000111133478
Q ss_pred CCcEEEEEe----------CCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEE-EEECCCcEEEEcCCCcCccc
Q 008011 498 EQAFIASGS----------EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA-SASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 498 ~~~~l~sgs----------~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~-s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+++.++... ..+.|.++|..+++.+..+.. ...+..++++||+..+|+ +...++.|.+.|..+++...
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 888877743 225799999999999998874 457899999999941555 44478999999999998776
Q ss_pred cc
Q 008011 567 RD 568 (581)
Q Consensus 567 ~~ 568 (581)
..
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 65
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.7e-09 Score=98.35 Aligned_cols=266 Identities=13% Similarity=0.175 Sum_probs=176.5
Q ss_pred CCeEEEEEcccC-CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---CcEEEEECCC--CcEEEE--EecCCCeEEE
Q 008011 293 DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE---EAIRRWDVNS--GECLHV--YEKTGVGLIS 364 (581)
Q Consensus 293 dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d---g~i~vwd~~~--~~~~~~--~~~~~~~v~~ 364 (581)
+.-|++|++.+. +++.. ..+-.+.+.++-|+|+|+.+.|.++..+ |.|..|.++. |+.... ......+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~-~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL-LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccch-hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 456999999843 23322 2334566778999999999999988654 6787777764 554322 2223344478
Q ss_pred EEEecCCCeEEEEeC-CCcEEEEeCCC-CeeEee--ccCc----------cccEEEEEEeeCCCEEEEEEc-CCeEEEEE
Q 008011 365 CGWFLDGGGIFAGMT-DKSICLWDLDG-RELESW--KGQK----------TLRISDMAITDDGKRIISICR-EAAILLLD 429 (581)
Q Consensus 365 ~~~~~~~~~l~sg~~-dg~i~iwd~~~-~~~~~~--~~~~----------~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d 429 (581)
++.++++++++++.. .|.|.++-++. +.+... ...| ...+....+.|+++++++.+- .-.|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 899999999998875 56899998853 322111 0111 112788899999999988764 45799999
Q ss_pred CCCCe-----eeeEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCceeEEEecc-------ccceeEEEeeeCC
Q 008011 430 REANF-----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPKLVSRYKGH-------KRARFVIRSCFGG 496 (581)
Q Consensus 430 ~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~~ 496 (581)
+..+. ............+.|+|++++..+.++ +++|.+|........+..+..+ .+.. ....+..+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEEC
Confidence 98765 223355667889999999999888776 8999999998743333333211 1111 12233338
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCC--Cce--EEEeccCcCCEEEEEEcCCCCcEEEEEEC-CCcEEEEcCCC
Q 008011 497 FEQAFIASGSE-DSQVYIWHRYT--GEL--VLALAGHSGSVNCVSWNPANLHMLASASD-DRTIRIWGLDQ 561 (581)
Q Consensus 497 ~~~~~l~sgs~-dg~I~iwd~~~--~~~--~~~l~~h~~~v~~l~~~p~~~~~l~s~s~-Dg~I~iW~~~~ 561 (581)
++|++|+++.. ...|.+|.+.. +++ +.....+......+.++|.+ ++|+.++. +..|.+|..+.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 99999988765 33788887653 332 22233344457899999999 56666664 45788988764
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.4e-09 Score=96.82 Aligned_cols=270 Identities=15% Similarity=0.186 Sum_probs=181.3
Q ss_pred ccccCcEEEEEEcCCCCEEEEEEC---CCeEEEEEcccC-CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC-CCcEEE
Q 008011 269 EAHSDEVWFLQFSHDGKYLASSSK---DQSAIIWEVKED-GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRR 343 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~v 343 (581)
-.+.+.++-++|+|+++.|.++-. +|.|.-|.++.. +.+..+........+-..+++++++++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 356778899999999998888754 477888888754 566655554444455588999999999998876 478999
Q ss_pred EECCC-CcEEEE--EecCCCe----------EEEEEEecCCCeEEEEeC-CCcEEEEeCCCCeeEeec---cCccccEEE
Q 008011 344 WDVNS-GECLHV--YEKTGVG----------LISCGWFLDGGGIFAGMT-DKSICLWDLDGRELESWK---GQKTLRISD 406 (581)
Q Consensus 344 wd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 406 (581)
+-+.. |..... ...|... +....+.|+++++++..- -..|.+|++..+.+.... .......+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 98865 433221 1233333 778889999999888764 347999999866553322 233457889
Q ss_pred EEEeeCCCEEEEEEc-CCeEEEEECCCC--ee-ee---------EecCCceEEEEECCCCCEEEEEee-CCcEEEEEecC
Q 008011 407 MAITDDGKRIISICR-EAAILLLDREAN--FE-RW---------IEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIES 472 (581)
Q Consensus 407 i~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~-~~---------~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~ 472 (581)
|.|+|++++..+.+. +++|.+|..... .. .. +........+.+++||++|.++.. ...|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 999999999888775 789999988774 21 11 123456778999999999998765 34788888876
Q ss_pred CCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-cEEEEeC--CCCceEEEec-cCcCCEEEEEEc
Q 008011 473 DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHR--YTGELVLALA-GHSGSVNCVSWN 538 (581)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~--~~~~~~~~l~-~h~~~v~~l~~~ 538 (581)
....+............-+..-+.+++++|+++.+++ .|.+|.+ .+|++..... .......||.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5343333322211111112222378899999888865 7888865 4555543332 234455666664
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=6.1e-11 Score=123.40 Aligned_cols=277 Identities=17% Similarity=0.202 Sum_probs=185.5
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeee---EEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVS---LKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
-+++++.++-. +||..|. .-.|.+||...+.-+. ..+.+..|...=.-- -.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence 34445555544 5666654 3458999987653221 112223341000000 0234555555444443322211
Q ss_pred CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccc----cEEEEEEeeCCCEEEEEEcCCe
Q 008011 349 GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTL----RISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
. . +......+....+.-+...++.++.++.+.+||.....+......... ...-+.++++.-++++|+.-+.
T Consensus 81 ~-~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 Q-I---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred h-h---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1 1 112223344455566788899999999999999976555443332221 1122334556668899999999
Q ss_pred EEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEE
Q 008011 425 ILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 425 i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 502 (581)
|.+|+..... .....|.+.|.++.++-||+++++.+.|.++++|++++........-+|...++. +++ .++ .+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~~-~~n--~i 231 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA--CCF-LPN--RI 231 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE--EEe-ccc--ee
Confidence 9999987433 5578999999999999999999999999999999999985555566778776444 444 444 99
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeccCc-CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 503 ASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
+++++|.+.++|+. +++.+..+.+|. ..|..++..++. ..++|++.||.+++|++......
T Consensus 232 ~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhccccc
Confidence 99999999999975 566666888885 578999999988 69999999999999999765543
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=4.1e-10 Score=110.64 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=149.9
Q ss_pred cCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeC------C--------------CCCeEEEeeCCCc
Q 008011 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS------P--------------NDHQLLTCGQEEA 340 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s------p--------------~~~~l~s~~~dg~ 340 (581)
.|...|+|....||.++||+...+...........-.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999998764322222222223344455542 2 3356788888999
Q ss_pred EEEEECCCCcEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEE
Q 008011 341 IRRWDVNSGECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS 418 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 418 (581)
|.+|++..|+....+. .|.+.|.++.|+.+-..|.+++.|+.+..|+................+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999888876 67889999999999999999999999999999988877777666678999999999999988
Q ss_pred EEcCCeEEEEECCCCe--eeeEecCCceEEEEECCC-----CCEEEEEe-eCCcEEEEEecC
Q 008011 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKD-----NKYLLVNL-INQEIHLWSIES 472 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~-----~~~l~~~~-~d~~i~iwd~~~ 472 (581)
++ +.|.+||+++.+ ..+.+|.++|.+++|--+ |.+++++. .+..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 589999999998 778899999999999776 67766644 355677887755
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.1e-10 Score=106.88 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=169.7
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc-----EEEEEecCC------------CeEEEEEEecCCC--eEEEE
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTG------------VGLISCGWFLDGG--GIFAG 377 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~sg 377 (581)
..-|.++.|...|.+|++|+.+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4558899999999999999999999999643322 223333332 3578889988654 57888
Q ss_pred eCCCcEEEEeCCCCeeE------------------------------------eeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 378 MTDKSICLWDLDGRELE------------------------------------SWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 378 ~~dg~i~iwd~~~~~~~------------------------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
+.|.+|++|.+..+... .+...|...|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 89999999988432111 1223556678999999999988876 5
Q ss_pred CCeEEEEECCCCee--eeE--------ecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCc---eeEEEeccc---
Q 008011 422 EAAILLLDREANFE--RWI--------EEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPK---LVSRYKGHK--- 484 (581)
Q Consensus 422 dg~i~i~d~~~~~~--~~~--------~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~--- 484 (581)
|-.|.+|++.-... ... ....-|++..|+| ..+.++..+..|+|++.|++...- ..+.+....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67889998865431 111 1234588999999 567888888899999999984311 111111111
Q ss_pred ------cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC-CCCceEEEeccCcC------------CE---EEEEEcCCCC
Q 008011 485 ------RARFVIRSCFGGFEQAFIASGSEDSQVYIWHR-YTGELVLALAGHSG------------SV---NCVSWNPANL 542 (581)
Q Consensus 485 ------~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~-~~~~~~~~l~~h~~------------~v---~~l~~~p~~~ 542 (581)
..+..|.-.-++.+|+|+++-.. -+|++||+ ...+++.+++-|.. .| ..++|+.++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~- 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND- 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-
Confidence 12223444455889999986543 58999998 45677777766642 33 357899988
Q ss_pred cEEEEEECCCcEEEEcCCCcCc
Q 008011 543 HMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 543 ~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..++|||....++++++..+..
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ceEecccccceEEEecCCCCcc
Confidence 6999999999999999765543
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=1.8e-09 Score=118.72 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=188.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEE----EcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIW----EVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iw----d~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
...+.|.++.|-++...++.+..+|.|.+. +..+ ..+ .....-...|.+++||||+..|+..+.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~---E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEI---EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-cee---EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 4432 222 33334567899999999999999999999887764
Q ss_pred CC---------------C--------CcEEEEEec------------------------CCCeEEEEEEecCCCeEEEEe
Q 008011 346 VN---------------S--------GECLHVYEK------------------------TGVGLISCGWFLDGGGIFAGM 378 (581)
Q Consensus 346 ~~---------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~sg~ 378 (581)
-. . |+.-..|.+ .+..-..++|-.||.++++.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 21 0 010001100 222456788999999999877
Q ss_pred C---C---CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc---CCeEEEEECCCCeeeeE-----ecCCce
Q 008011 379 T---D---KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR---EAAILLLDREANFERWI-----EEEEVI 444 (581)
Q Consensus 379 ~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~-----~~~~~i 444 (581)
. . ..++||+-+ +.+......-.+--.+++|.|.|++|++... ...|.+|..+.....-+ .....|
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence 4 2 479999976 5555555544445668999999999998875 45688888776552211 345679
Q ss_pred EEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE-EeccccceeEEEeeeCCC-CCcEEEEEeCCCcEEEEe----CCC
Q 008011 445 TSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGF-EQAFIASGSEDSQVYIWH----RYT 518 (581)
Q Consensus 445 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~sgs~dg~I~iwd----~~~ 518 (581)
..+.|++|+..|++...|. |.+|-..+..-..+. +...... . +....|+| +...|...+.+|.+..++ +..
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~-~-~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE-S-VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC-C-CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 9999999999999977554 999998775222221 2211111 0 11122244 445566666656665443 211
Q ss_pred Cc--------eEEEec-----------------------cCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 519 GE--------LVLALA-----------------------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 519 ~~--------~~~~l~-----------------------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
+. .+..+. .-..+|++++|++++ ..+++-..||.|.+|.....
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecCC
Confidence 10 111110 124689999999998 56999999999999986544
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=8.7e-10 Score=99.08 Aligned_cols=267 Identities=14% Similarity=0.096 Sum_probs=173.9
Q ss_pred CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC---CCC-eEEEeeCCCcEEEEECCCCcEEEEEecC------CCeE
Q 008011 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDH-QLLTCGQEEAIRRWDVNSGECLHVYEKT------GVGL 362 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v 362 (581)
.|.+.+|++..................+..+.|.- ++. .++-+..+|.|.++..........+.+- ....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46788998875433221111222345577777864 444 5667778899999987654444444322 1124
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe--eccCccccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCe----e
Q 008011 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELES--WKGQKTLRISDMAITD-DGKRIISICREAAILLLDREANF----E 435 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~ 435 (581)
.++.|++.+..++++..+|.+.+-+.....+.. ....|..+.....|+. +.+.+.+|+.|+.+..||++... .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 578899999999999999999866655444443 4445566788888875 34688999999999999999443 2
Q ss_pred eeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEE
Q 008011 436 RWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIW 514 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iw 514 (581)
....|...|.++.-+| .+.++++|+.|..|++||.++-.+++..-... +.++.+...... .+.+++++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVWRIKHHPEI-FHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceEEEEecchh-hhHHHHHHHhcC-ceEE
Confidence 2345777888888877 68899999999999999999765665543322 344444332211 123344443343 4555
Q ss_pred eCCCC--c---eEEEeccCcCCEEEEEEcCCCCcEEEEEE-CCCcEE-EEcCCCcC
Q 008011 515 HRYTG--E---LVLALAGHSGSVNCVSWNPANLHMLASAS-DDRTIR-IWGLDQIN 563 (581)
Q Consensus 515 d~~~~--~---~~~~l~~h~~~v~~l~~~p~~~~~l~s~s-~Dg~I~-iW~~~~~~ 563 (581)
+...+ + .....+.|.+-+..-.|.... .+|+||+ .|+.++ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccCC
Confidence 54432 3 345566788888888896655 5899876 577755 77655543
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2e-09 Score=109.70 Aligned_cols=236 Identities=9% Similarity=0.047 Sum_probs=145.2
Q ss_pred eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeE---EEeeCCC--cEEEEECCCCcEEEEEecCCCeEEEEEEec
Q 008011 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL---LTCGQEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFL 369 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l---~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 369 (581)
.|.+.|.+.... ..+......+..-.|+|||+.+ ++...+| .|.+.++.+++.... ...........|+|
T Consensus 166 ~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC
Confidence 566666653321 2344455667788999999752 2444443 577788887765433 33344456789999
Q ss_pred CCCeEEEEeC-CC----cEEEEeCCC---CeeEeeccCccccEEEEEEeeCCCEEEEEE-cCCe--EEEEECCC--Ce-e
Q 008011 370 DGGGIFAGMT-DK----SICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISIC-REAA--ILLLDREA--NF-E 435 (581)
Q Consensus 370 ~~~~l~sg~~-dg----~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~--~~-~ 435 (581)
||+.|+..+. +| .+..|++.. +................+|+|||+.|+..+ .+|. |+++++.. +. .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9999887653 22 344467654 233333322222346789999999888766 4554 55555542 22 2
Q ss_pred eeEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC---CC
Q 008011 436 RWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE---DS 509 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~---dg 509 (581)
........+....|+|||+.|+..+.+ ..|.+||+.++ +. ..+...... .....|+|+|+.|+..+. ..
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~---~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPEN---KESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCC---ccceEECCCCCEEEEEECCCCCc
Confidence 333344567789999999999877653 36899999876 33 233322211 223345899988775443 34
Q ss_pred cEEEEeCCCCceEEEeccCcCCEEEEEEcCCC
Q 008011 510 QVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 510 ~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~ 541 (581)
.|++||+..++..... ...+.+...+|+|..
T Consensus 396 ~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 7899999877654433 345667788898854
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=5.1e-09 Score=100.06 Aligned_cols=172 Identities=16% Similarity=0.126 Sum_probs=137.8
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC-cEEEEECCCCcEEEEEecCCCe
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-AIRRWDVNSGECLHVYEKTGVG 361 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~ 361 (581)
+|.+++..|. |.+.|.+...+-. .--+|.+.|....+..+++-++.|..|| .+-|+|..+++. +.+...-+.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~-----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS-----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGN 403 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee-----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccc
Confidence 6788888874 5677776654321 2246788899999999999999999999 899999988764 445566678
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCC----eEEEEECCCCe-ee
Q 008011 362 LISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA----AILLLDREANF-ER 436 (581)
Q Consensus 362 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~-~~ 436 (581)
|.++..+++|+.++++.....+.+.|++++...........-|+.+.|+|++++++-+-.+| .|+++|..+++ ..
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 99999999999999999999999999999998888777777899999999999999887665 68999999977 34
Q ss_pred eEecCCceEEEEECCCCCEEEEEee
Q 008011 437 WIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 437 ~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
.......=.+-+|.||+++|..-+.
T Consensus 484 vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 484 VTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ecCCcccccCcccCCCCcEEEEEec
Confidence 4444444556788999998876543
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.9e-11 Score=130.62 Aligned_cols=243 Identities=14% Similarity=0.205 Sum_probs=177.8
Q ss_pred EEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC-CCeEEEE
Q 008011 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISC 365 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~ 365 (581)
+.....++...-|..+... ..+..+-..|.++.-+|...+-+||+.||.|++|....++.+..+... ...|+.+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~-----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS-----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred CCcccCCccccceecccce-----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 3333444555555544221 123345566888888999999999999999999999999888777633 4788999
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE---cCCeEEEEECCCCe---eeeEe
Q 008011 366 GWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANF---ERWIE 439 (581)
Q Consensus 366 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~ 439 (581)
.|+.+|+.+..+..||.+.+|.+.......+..+ .....++.|-. ..+++++ .++.+.+||..-.. .....
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qch-nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCH-NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred hhcccCCceeeeccCCceeecccCCcceeccccC-Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence 9999999999999999999999985555555444 34677777765 4556554 46789999976544 34478
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC
Q 008011 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG 519 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~ 519 (581)
|.+.++++++-|....|++|+.+|.|++||++.. ++...+.. .. ...++++|+..|.|+||++...
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh------------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999999999999999999999999876 55555443 12 4568999999999999999888
Q ss_pred ceEEEecc-C--cCC--E--EEEEEcCCCCcEEEEEECCCc
Q 008011 520 ELVLALAG-H--SGS--V--NCVSWNPANLHMLASASDDRT 553 (581)
Q Consensus 520 ~~~~~l~~-h--~~~--v--~~l~~~p~~~~~l~s~s~Dg~ 553 (581)
..+.++.. | .+- . ..+...+. +.|.+|+.||+
T Consensus 2401 ~ll~~~p~e~ak~gfFr~~g~Q~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2401 GLLHTFPSEHAKQGFFRNIGMQINVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred chhhcCchhhcccchhhhcCceeeeccC--ceEEEecCCCC
Confidence 77776653 1 111 1 22222332 36778888774
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=111.00 Aligned_cols=202 Identities=16% Similarity=0.065 Sum_probs=127.9
Q ss_pred eeccccCcEEEEEEcCCCCE--E-EEEECCC--eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC-CC-
Q 008011 267 ILEAHSDEVWFLQFSHDGKY--L-ASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EE- 339 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~--l-asgs~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg- 339 (581)
.+......+.+-+|||||+. + ++...+| .|.+.++.++.. ..+ ....+.....+|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~l---t~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKI---LALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEe---ecCCCCccceEECCCCCEEEEEECCCCC
Confidence 34445556778899999974 2 2443444 466667765432 222 223444557899999998887653 22
Q ss_pred ---cEEEEECCCC---cEEEEEecCCCeEEEEEEecCCCeEEEEe-CCCc--EEEEeCCC--CeeEeeccCccccEEEEE
Q 008011 340 ---AIRRWDVNSG---ECLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKS--ICLWDLDG--RELESWKGQKTLRISDMA 408 (581)
Q Consensus 340 ---~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~--i~iwd~~~--~~~~~~~~~~~~~v~~i~ 408 (581)
.+.+|++.++ +...............+|+|||+.|+..+ .+|. |+++++.. +....... ....+....
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~ 333 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPA 333 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCcccee
Confidence 3445777653 33333323323446789999999887765 4564 44445532 32332322 223567889
Q ss_pred EeeCCCEEEEEEcC---CeEEEEECCCCeeeeEe-cCCceEEEEECCCCCEEEEEee---CCcEEEEEecCC
Q 008011 409 ITDDGKRIISICRE---AAILLLDREANFERWIE-EEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESD 473 (581)
Q Consensus 409 ~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~ 473 (581)
|+|||+.|+....+ ..|.+||+.++...... ....+....|+|||+.|+.... ...|+++|+.++
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99999999877653 47999999888744333 3346778999999998886544 346888888765
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.27 E-value=3.1e-09 Score=102.50 Aligned_cols=272 Identities=17% Similarity=0.290 Sum_probs=187.1
Q ss_pred ccceeeeccccCc--EE-EEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC--CeEEE--
Q 008011 262 SQTLQILEAHSDE--VW-FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND--HQLLT-- 334 (581)
Q Consensus 262 ~~~~~~l~~h~~~--V~-~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l~s-- 334 (581)
...+..+.+-..+ .+ -+.|+-+.+|+|--. ...++|+++..+-.....+.+. ...|....|+|.+ ..|+.
T Consensus 118 g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~t 194 (561)
T COG5354 118 GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWT 194 (561)
T ss_pred ceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEc
Confidence 3344555555554 66 788999988877552 3469999973221111222222 3568888999953 33444
Q ss_pred ---eeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-----------CCCcEEEEeCCCCeeEeeccCc
Q 008011 335 ---CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-----------TDKSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 335 ---~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-----------~dg~i~iwd~~~~~~~~~~~~~ 400 (581)
.+..+.+++|.+..+..+.+-.-....-..+.|.+.|+++++-. ....++++++....+.... ..
T Consensus 195 PEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~ 273 (561)
T COG5354 195 PEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL 273 (561)
T ss_pred cccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc
Confidence 35678899999987776655444444445788999888876421 1346889998866555444 33
Q ss_pred cccEEEEEEeeCCCEEEEEE--cCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecCCCc
Q 008011 401 TLRISDMAITDDGKRIISIC--REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPK 475 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~ 475 (581)
.++|.+.+|.|.++.+++.+ .+..+.++|++.. ..+......-+.+.|+|.++++++++-+ |.+-+||..+...
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 45899999999998776554 6788999999988 5555666667888999999999997765 6899999988766
Q ss_pred eeEEEeccccceeEEEeeeCCCCCcEEEEEeC------CCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEE
Q 008011 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSE------DSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASAS 549 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s 549 (581)
.+..+.+.. .+.|-|+|++.++.+... |..|.|||+...... ..+.+.|.|.+ ++..+.+
T Consensus 353 ~~~~~~~~n-----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~-~~~ttsS 418 (561)
T COG5354 353 VAGAFNGLN-----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSG-QYVTTSS 418 (561)
T ss_pred EEEEeecCC-----ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCc-ccceeec
Confidence 665666554 446777999999887653 788999998543322 45677888877 3555555
Q ss_pred CCC
Q 008011 550 DDR 552 (581)
Q Consensus 550 ~Dg 552 (581)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 443
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=2.3e-10 Score=104.82 Aligned_cols=249 Identities=15% Similarity=0.265 Sum_probs=182.3
Q ss_pred eEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECC-CCcEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEE
Q 008011 308 SLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN-SGECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICL 385 (581)
Q Consensus 308 ~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 385 (581)
.....+.||.+.|+....-|...-+++.+.|.+++||--. .++.-..+. ....+++++.+.++...|++|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 4556788999999999999988899999999999999543 344332222 33568899999999999999999999999
Q ss_pred EeCC----CCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEE
Q 008011 386 WDLD----GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 386 wd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~ 458 (581)
+.+. ..........|..++..+-|+-...++++.+.|..+..--.+.+. ....... .+.+.+.-. +..+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--ASALQFDAL--YAFV 170 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--CCCCceeeE--EEEe
Confidence 8774 233344455667789999999999999999988876654444433 1111111 111111111 5556
Q ss_pred EeeCCcEEEEEecC-CCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCc-eEEEeccCcCCEEEEE
Q 008011 459 NLINQEIHLWSIES-DPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGE-LVLALAGHSGSVNCVS 536 (581)
Q Consensus 459 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~v~~l~ 536 (581)
|...|.|....+.. .-.++.++.+|... +.+..|.+....+++|..|..+.+||+--.+ ....+.+|...|..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~---~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGE---VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccc---eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 66667776665532 23677788888876 5566668899999999999999999986543 4567889999999998
Q ss_pred EcCCCCcEEEEEECCCcEEEEcCCCcCc
Q 008011 537 WNPANLHMLASASDDRTIRIWGLDQINM 564 (581)
Q Consensus 537 ~~p~~~~~l~s~s~Dg~I~iW~~~~~~~ 564 (581)
..+.- ..+++++.||.|.+|+++....
T Consensus 248 ~~~~t-~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 248 YAQHT-RQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhh-eeeeeccCCCeEEEEeccceee
Confidence 88877 6899999999999999986543
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=8.9e-09 Score=104.23 Aligned_cols=258 Identities=14% Similarity=0.179 Sum_probs=160.9
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
++..++.++.++.+..+|..++... ..... ...+.+.-.. .+..++.++.+|.+..||..+|+.+..+.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe---eeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 4667888888999999999876432 22211 1222211011 34567778889999999999999887765433211
Q ss_pred E-----EEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc-c---cc---EEEEEEe--eCCCEEEEEEcCCeEEEE
Q 008011 363 I-----SCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK-T---LR---ISDMAIT--DDGKRIISICREAAILLL 428 (581)
Q Consensus 363 ~-----~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~---~~---v~~i~~~--~~~~~l~~~~~dg~i~i~ 428 (581)
. +... .+..++.+..++.+..+|..+++..-..... . .. ...+.-+ -.+..+++++.+|.++.+
T Consensus 179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 1 1111 2347788888999999999876643221100 0 00 0001001 135578888899999999
Q ss_pred ECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC
Q 008011 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED 508 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d 508 (581)
|..++...+........... .++..+++++.+|.++.+|..++ +.+............. . ...+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ss-p---~i~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTA-P---AVVGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCcccc-C---EEECCEEEEEeCC
Confidence 99988754433322222222 25677888888999999999887 4443332111111000 0 1135688999999
Q ss_pred CcEEEEeCCCCceEEEeccCcCCEEE-EEEcCCCCcEEEEEECCCcEEEE
Q 008011 509 SQVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~l~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
|.|+++|..+|+.+.++..+...+.. ..+. ++ .|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 99999999999999988876654333 2333 33 47788999999876
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=6.4e-11 Score=129.00 Aligned_cols=200 Identities=14% Similarity=0.212 Sum_probs=157.0
Q ss_pred eeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 267 ILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 267 ~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
.++.|-..|.++.-+|...+.+||+.||.|++|.+..+.++.+.++. +. ..|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCCceeeeccCCceeeccc
Confidence 34456678889998999999999999999999999877666554443 33 88999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEe---CCCcEEEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGM---TDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
. .+.....+.|........|.. ..+++++ .++.+.+||.-- .........|...++++++.|..+.+++|+++
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7 666777788888888888875 5666654 467999999732 11111226677799999999999999999999
Q ss_pred CeEEEEECCCCeeee-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe
Q 008011 423 AAILLLDREANFERW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 423 g~i~i~d~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 481 (581)
|.|++||++..+.+. ... ++ ...++++++..|.++||++... ..+..+.
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEcccc-chhhcCc
Confidence 999999999877211 111 44 5678999999999999999876 4444443
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=1.5e-08 Score=102.59 Aligned_cols=267 Identities=9% Similarity=0.077 Sum_probs=166.7
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
.+..+++++.+|.+.-+|..++... .............. .++..+++++.+|.+..+|..+|+.+....... .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---WRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---eeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-ee
Confidence 3567888888999999998876432 22221211111222 246788888899999999999999887665433 22
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccE-----EEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee
Q 008011 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDREANFERW 437 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 437 (581)
.+.... .+..++.++.+|.|+.||.++++..-......... .+..+. +..++.+..++.+..+|..++...+
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 211111 35578888889999999998766543222211111 111111 2467788888999999998887433
Q ss_pred Eec---CC---c---eEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEe
Q 008011 438 IEE---EE---V---ITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 438 ~~~---~~---~---i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
... .. . ...+.-+| .+..+++++.++.++.||..++ +.+....... . ... ...+..++.++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~~-~-----~~p-~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDASS-Y-----QGP-AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccCC-c-----cCc-eEeCCEEEEEC
Confidence 211 00 0 00111112 3567888888999999999887 4444333111 0 001 22456788888
Q ss_pred CCCcEEEEeCCCCceEEEeccCc-CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 507 EDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
.||.++.+|..+|+.+....... ....+... .+ ..+++++.||.|++||..++++..+..
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 99999999999998876553221 12222222 24 478889999999999999999876544
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=6.6e-11 Score=114.55 Aligned_cols=281 Identities=15% Similarity=0.269 Sum_probs=185.7
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCC----eeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCc
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG----QVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEA 340 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~ 340 (581)
+..+.||+..|..++--.+.+-+++++.|++|++|.++..+ .-.+..++..|..+|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999887888889999999999999987432 224677889999999999999988888765 788
Q ss_pred EEEEECCCCcEEEEEecC--CCeEEEEEEec--CCCeEEEE-eCCCcEEEEeCCCCeeEeec-----cCccccEEEEEEe
Q 008011 341 IRRWDVNSGECLHVYEKT--GVGLISCGWFL--DGGGIFAG-MTDKSICLWDLDGRELESWK-----GQKTLRISDMAIT 410 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~sg-~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~ 410 (581)
|.+||.--|+.+..+... .+.+..+...+ +...+.+| +...+|+++|.+..+..... .....-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998777765533211 12222222233 44455555 67889999999865432211 2333568999999
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEE-EEecCCCceeEEEeccccce
Q 008011 411 DDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL-WSIESDPKLVSRYKGHKRAR 487 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~ 487 (581)
+.|++++++-.+|.|.+.|.+++. ..+....-....++ .|..+.++....|.++.+ |..-.+ ......+....+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCcch
Confidence 999999999999999999999987 22222222222222 244456666666777777 765554 2222222222221
Q ss_pred eEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-----ceEEEecc--CcCCEEEEEEcCCCCcEEEEEECCCcEEE
Q 008011 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-----ELVLALAG--HSGSVNCVSWNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-----~~~~~l~~--h~~~v~~l~~~p~~~~~l~s~s~Dg~I~i 556 (581)
.|...-|.-+++....+.+.+|.- .+ ..+..++. ..+..++++--|-+ .-+..|+..|.|.+
T Consensus 964 -----hflqsvgpSLV~a~~Gn~lgVYad-~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 -----HFLQSVGPSLVTAQNGNILGVYAD-SAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred -----hhhhccCceeEEeccCcEEEEEec-chhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence 111223455777777777888852 22 11222322 35678888888877 56777888888875
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=7e-10 Score=109.00 Aligned_cols=207 Identities=14% Similarity=0.203 Sum_probs=152.0
Q ss_pred CCCCeEEEeeCCCcEEEEECCCCcEEEEEecC---CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcccc
Q 008011 327 PNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT---GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLR 403 (581)
Q Consensus 327 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 403 (581)
|...++|....||.+++||..+++....|... .+..++..|. |.+... . ..+.... .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s------------~-~k~~~~~--~ 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS------------P-MKWLSLE--K 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc------------h-HHHHhHH--H
Confidence 45678999999999999999999887776532 2333444443 111110 0 0000000 0
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee----EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008011 404 ISDMAITDDGKRIISICREAAILLLDREANFERW----IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 404 v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
. ..-+.+...++-|...|.|.+|+...+.... -.|.+.|+++.++.+-..|.+++.|+.+..|+.... ..+..
T Consensus 63 ~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~ 139 (541)
T KOG4547|consen 63 A--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRI 139 (541)
T ss_pred H--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeee
Confidence 0 0112344577888889999999999888222 257888999999999999999999999999999887 77777
Q ss_pred EeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCC-----CCcEEEEEECCCcE
Q 008011 480 YKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPA-----NLHMLASASDDRTI 554 (581)
Q Consensus 480 ~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~-----~~~~l~s~s~Dg~I 554 (581)
+...+.....+ |. +||+..+++++ ++|++||+++++.+..|.+|.++|++++|..+ |.++|.++..+.-+
T Consensus 140 ~~~~~~~~~sl--~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 140 WKEQKPLVSSL--CI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eccCCCccceE--EE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 77766653333 33 88999999887 57999999999999999999999999999877 54677777788889
Q ss_pred EEEcCCC
Q 008011 555 RIWGLDQ 561 (581)
Q Consensus 555 ~iW~~~~ 561 (581)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 9998865
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=5.5e-09 Score=105.52 Aligned_cols=303 Identities=16% Similarity=0.150 Sum_probs=202.7
Q ss_pred ccccccceeeeccccCcEEEEEEcCC------------CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEe
Q 008011 258 NRIPSQTLQILEAHSDEVWFLQFSHD------------GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW 325 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~------------g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~ 325 (581)
+....+.++.++-|...|+.+.|.|- .-+||++...|.|.+||.... ..+..+..|..++..++|
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheee
Confidence 44567789999999999999999873 125778888899999999865 445667889999999999
Q ss_pred CC---CC-CeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCC-------Cee
Q 008011 326 SP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDG-------REL 393 (581)
Q Consensus 326 sp---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~-------~~~ 393 (581)
-+ +. ..|++-....++.+|+..+|+....+........|+.+.| |.+++..-+..|.+.+-+.-+ ++.
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 87 33 4566667778999999999999998887777888888888 677777777778777776521 122
Q ss_pred EeeccCccc------------c-------------EEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEE
Q 008011 394 ESWKGQKTL------------R-------------ISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITS 446 (581)
Q Consensus 394 ~~~~~~~~~------------~-------------v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~ 446 (581)
..+...+.. . ...++|+|.-+.++...-...+.++|++-.. ....-..+.+.-
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akf 277 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKF 277 (1062)
T ss_pred EEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcce
Confidence 222211110 0 1124567776666666777788888888766 222233344445
Q ss_pred EEECCC--CCEEEEEeeCCcEEEEEecCCCce------------------eEEEe-------------------------
Q 008011 447 FSLSKD--NKYLLVNLINQEIHLWSIESDPKL------------------VSRYK------------------------- 481 (581)
Q Consensus 447 ~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~------------------~~~~~------------------------- 481 (581)
+.+-|+ ...|++...||.+.+|-.+..... +..++
T Consensus 278 v~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 278 VDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 555554 456888888888888865431000 00000
Q ss_pred -----------------------------------------------ccccceeEEE--------eeeCCCCC-------
Q 008011 482 -----------------------------------------------GHKRARFVIR--------SCFGGFEQ------- 499 (581)
Q Consensus 482 -----------------------------------------------~~~~~~~~i~--------~~~~~~~~------- 499 (581)
+|.......+ .....|.+
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~ 437 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTV 437 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceee
Confidence 0000000000 00001122
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECC----------CcEEEEcCCCcCcc
Q 008011 500 AFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD----------RTIRIWGLDQINMK 565 (581)
Q Consensus 500 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~D----------g~I~iW~~~~~~~~ 565 (581)
.++|.|.+.|+|.++|+.++.....+..|.+.|.++.|-... .+++.+.. +.+.+-|+.+|-.+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s--slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS--SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce--eEEEeeeccccccccceeeeEEEEEccccccc
Confidence 357899999999999999999999999999999999998765 45555432 34667777776543
No 273
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.21 E-value=1.1e-10 Score=102.65 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=97.7
Q ss_pred ccHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCC------HHHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHH
Q 008011 61 IKKSEFIKIITRALYSLGYDKSGALLEEESGIPMHS------SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASF 134 (581)
Q Consensus 61 ~~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~~------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 134 (581)
++++|+++||+.||...||.++|..|.+|+|+..+. ..-.+++.+|..|+-++|+..+..+...--...+.+.|
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F 103 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFF 103 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHH
Confidence 688999999999999999999999999999998732 24456889999999999999999885222123345889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcccccccC-hhhHHHhhhcc
Q 008011 135 LILEQKFLELLRRDKVSAALNSLRSEIVPLQIN-MSRVHELASCI 178 (581)
Q Consensus 135 ~i~~q~~lell~~~~~~~a~~~l~~~l~pl~~~-~~~~~~l~~~l 178 (581)
.+++|+++||++.+...+|+.++|.+++|.... .+...+|...+
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999998764 35555555543
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=1.8e-08 Score=113.03 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=159.6
Q ss_pred EEEEeCCC-CCeEEEeeCCCcEEEEECCCCcEEEEEecC--------------CCeEEEEEEecCCCeEEEEeC-CCcEE
Q 008011 321 FTVSWSPN-DHQLLTCGQEEAIRRWDVNSGECLHVYEKT--------------GVGLISCGWFLDGGGIFAGMT-DKSIC 384 (581)
Q Consensus 321 ~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~sg~~-dg~i~ 384 (581)
..++++++ +.++++-..++.|++||.. +..+..+... -.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778764 5566666678889999975 4444444321 013477889988887766654 56799
Q ss_pred EEeCCCCeeEeeccCc----------------cccEEEEEEee-CCCEEEEEEcCCeEEEEECCCCeeeeEec-------
Q 008011 385 LWDLDGRELESWKGQK----------------TLRISDMAITD-DGKRIISICREAAILLLDREANFERWIEE------- 440 (581)
Q Consensus 385 iwd~~~~~~~~~~~~~----------------~~~v~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 440 (581)
++|+.++.+..+.... -.....++++| ++..+++.+.++.|++||..++.......
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 9999877665442210 12356899999 55566676778999999998776332211
Q ss_pred ---------CCceEEEEECCCCCEEEEE-eeCCcEEEEEecCCCceeEE------------Eeccccc-----eeEEEee
Q 008011 441 ---------EEVITSFSLSKDNKYLLVN-LINQEIHLWSIESDPKLVSR------------YKGHKRA-----RFVIRSC 493 (581)
Q Consensus 441 ---------~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~------------~~~~~~~-----~~~i~~~ 493 (581)
-.....++++|+++.|+++ +.++.|++||+.++...... +....+. ...-..+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 1235679999999855554 55789999999875321110 0000000 0001122
Q ss_pred eCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-------------cCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 494 FGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-------------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 494 ~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-------------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
.++++|+++++-+.++.|++||..++....... +.-....+++++++| +++++-+.+++|++||++
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECC
Confidence 336788888888999999999988776543221 112357789999999 789999999999999998
Q ss_pred CcCc
Q 008011 561 QINM 564 (581)
Q Consensus 561 ~~~~ 564 (581)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8765
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.4e-10 Score=112.91 Aligned_cols=233 Identities=13% Similarity=0.170 Sum_probs=167.1
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc---------------EEEEEecCCCeEEEEEEecCCCeEEEEeCCC
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE---------------CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK 381 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 381 (581)
.....|+.|+....++++||.||.++|..+.+.. .-+++.+|...|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4457899999999999999999999999886532 2246778999999999999999999999999
Q ss_pred cEEEEeCCCCeeEe--eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEe-cCCceEEEEECCCCCEEEE
Q 008011 382 SICLWDLDGRELES--WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE-EEEVITSFSLSKDNKYLLV 458 (581)
Q Consensus 382 ~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~ 458 (581)
.|.+|-+-.+.... ......+-|.+++|+.||..++.+..||.|.+=.++.....-.. .......+.|++|.+.++.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 99999986544322 12333457899999999999999999999999888776522111 2223457899999999999
Q ss_pred EeeCCcEEEEEecCCCce-------eEE---EeccccceeEEE-----eeeCCCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 008011 459 NLINQEIHLWSIESDPKL-------VSR---YKGHKRARFVIR-----SCFGGFEQAFIASGSEDSQVYIWHRYTGELVL 523 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~-------~~~---~~~~~~~~~~i~-----~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 523 (581)
+-.+|.+++||....... +.. +.........+. .....|+...++.+-.+|.+.|-.-.+.....
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 999999999998763211 110 110000111111 11235677889999999988887644432222
Q ss_pred EeccCcCCEEEEEEcCCCCcEEEEEECC
Q 008011 524 ALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 524 ~l~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
.+. -.-.|.+..|+++| .+|+.||.|
T Consensus 254 v~d-tgm~~vgakWnh~G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 VVD-TGMKIVGAKWNHNG-AVLAVCGND 279 (1189)
T ss_pred EEe-cccEeecceecCCC-cEEEEccCc
Confidence 222 12568899999999 699998865
No 276
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.17 E-value=1.5e-07 Score=88.99 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=146.7
Q ss_pred EEEeCC-CCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC-
Q 008011 322 TVSWSP-NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ- 399 (581)
Q Consensus 322 ~l~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~- 399 (581)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++...+..++++...+ +.++|..+++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567887 66666666678899999998876543 33332 66777773335666666544 55559988766544432
Q ss_pred ----ccccEEEEEEeeCCCEEEEEEcC--------CeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEE-EeeCCcEE
Q 008011 400 ----KTLRISDMAITDDGKRIISICRE--------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLV-NLINQEIH 466 (581)
Q Consensus 400 ----~~~~v~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~ 466 (581)
.....+++++.++|+..++.... |.|+.++...........-...+.++|+|+++.|++ -+..+.|.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeE
Confidence 34578999999999976666543 668888888333455555677899999999998765 45678899
Q ss_pred EEEecCCCc-e--eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEc-CCCC
Q 008011 467 LWSIESDPK-L--VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN-PANL 542 (581)
Q Consensus 467 iwd~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~-p~~~ 542 (581)
.|++..... . ...+...........-+....+|++.++....+.|.+++.. |+.+..+......+++++|. ++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 999975433 1 12221111111112222336789988888889999999976 99888887766689999994 5554
Q ss_pred cEEEEE
Q 008011 543 HMLASA 548 (581)
Q Consensus 543 ~~l~s~ 548 (581)
.+++|.
T Consensus 239 ~L~vTt 244 (246)
T PF08450_consen 239 TLYVTT 244 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555554
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=5e-09 Score=94.28 Aligned_cols=202 Identities=10% Similarity=0.082 Sum_probs=140.7
Q ss_pred cCcEEEEEEcC---CCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCC---CeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 272 SDEVWFLQFSH---DGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK---PVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~---~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
+..+..+.|.. +|. .++-+..+|.|.++.............+..-.- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566666653 455 566677889999998764322222222222111 24578899999999999999999966
Q ss_pred ECCCCcEE--EEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCe--eEeeccCccccEEEEEEee-CCCEEEE
Q 008011 345 DVNSGECL--HVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITD-DGKRIIS 418 (581)
Q Consensus 345 d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~-~~~~l~~ 418 (581)
+....... +..+.|..+++.+.|+. +.+.+++|+.|+.+..||++... +..-...|...|.+|.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 65555443 37889999999999976 45678999999999999998322 2222345666888888876 5779999
Q ss_pred EEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCC-CEEEEEeeCCcEEEEEecCC
Q 008011 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~ 473 (581)
|+.|-.|++||.++.. .......+.|..+.++|.- ..+++++.-+..+|.+....
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999999999999755 2333455889999999943 33444555556677777654
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=4.9e-08 Score=109.66 Aligned_cols=240 Identities=12% Similarity=0.105 Sum_probs=155.4
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEEcccCCeeeEEEeecC------------CCCCeEEEEeCCCCCeEEEeeC-CCcEE
Q 008011 277 FLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSG------------HRKPVFTVSWSPNDHQLLTCGQ-EEAIR 342 (581)
Q Consensus 277 ~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~------------h~~~V~~l~~sp~~~~l~s~~~-dg~i~ 342 (581)
.++++++ +.++++-+.++.|.+||.... ....... .+ +-.....+++.++++.|+++.. ++.|+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 5788774 567777777888999998632 1111111 01 1123578999998887666654 56799
Q ss_pred EEECCCCcEEEEEecC-----------------CCeEEEEEEecC-CCeEEEEeCCCcEEEEeCCCCeeEeeccC-----
Q 008011 343 RWDVNSGECLHVYEKT-----------------GVGLISCGWFLD-GGGIFAGMTDKSICLWDLDGRELESWKGQ----- 399 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----- 399 (581)
++|..++. +.++.+. -.....++++|+ +..+++.+.++.|++||..++....+...
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987765 3333211 012357899994 55556666788999999977655433211
Q ss_pred ---------ccccEEEEEEeeCCCEEEEE-EcCCeEEEEECCCCeeeeEec-----------------------CCceEE
Q 008011 400 ---------KTLRISDMAITDDGKRIISI-CREAAILLLDREANFERWIEE-----------------------EEVITS 446 (581)
Q Consensus 400 ---------~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----------------------~~~i~~ 446 (581)
.......++++|+++.|+++ +.++.|++||+.++....... -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 11245679999999855544 567899999998755222110 112468
Q ss_pred EEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc-----------eeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 447 FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA-----------RFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 447 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
++++++|+.+++.+.++.|++||..++ ... .+.+.... ......+..+++|+++++-+.++.|++||
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg-~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATK-RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCC-eEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 899999998888888999999999875 332 22221100 00112223377899999989999999999
Q ss_pred CCCCce
Q 008011 516 RYTGEL 521 (581)
Q Consensus 516 ~~~~~~ 521 (581)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988765
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4e-09 Score=106.52 Aligned_cols=284 Identities=12% Similarity=0.108 Sum_probs=195.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC------------CeEEEeeCCCcEE
Q 008011 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------------HQLLTCGQEEAIR 342 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------------~~l~s~~~dg~i~ 342 (581)
-.++.|+|.| ++|.|+. ..|.+-|..+- +.+..+..|...|+.+.|.|-. -.||++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~---q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSL---QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhh---hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 5678899887 5777764 46888887543 5667788899999999998721 2577888899999
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEec---CC-CeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-CCCEEE
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFL---DG-GGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRII 417 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~ 417 (581)
+||...+..+..+..+..++..++|-+ +. ..|++-.....|.+|+..+++..-..........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999999999999999999999987 33 4567777778999999988876655554444677888888 556777
Q ss_pred EEEcCCeEEEEECCCCe--------eee-EecCC------------c-------------eEEEEECCCCCEEEEEeeCC
Q 008011 418 SICREAAILLLDREANF--------ERW-IEEEE------------V-------------ITSFSLSKDNKYLLVNLINQ 463 (581)
Q Consensus 418 ~~~~dg~i~i~d~~~~~--------~~~-~~~~~------------~-------------i~~~~~sp~~~~l~~~~~d~ 463 (581)
..+..|.+.+.+.-... .+. ..|.. . ...++|+|.-+.++...-..
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 77777877776643211 111 11111 0 12357788766666667789
Q ss_pred cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCce----------------EEEecc
Q 008011 464 EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL----------------VLALAG 527 (581)
Q Consensus 464 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~----------------~~~l~~ 527 (581)
.+.++|++-. ..+....-..+....+.+.. .|....++++..||.+.+|-.+.... ...+..
T Consensus 253 ellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 253 ELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 9999999876 55555555555444455554 56677899999999999997654211 111111
Q ss_pred -CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 528 -HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 528 -h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+-.+......|..+..++.--.+|.+.+|.+.++++.
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 11223333445654455555567888999999976654
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=1.6e-07 Score=91.25 Aligned_cols=235 Identities=11% Similarity=0.091 Sum_probs=145.5
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEEcccCCeeeEEEeecCC-------CCCeEEEEeCCCCCeEEEeeC--CCc
Q 008011 280 FSHDGKYLASSSK----------DQSAIIWEVKEDGQVSLKHRLSGH-------RKPVFTVSWSPNDHQLLTCGQ--EEA 340 (581)
Q Consensus 280 ~s~~g~~lasgs~----------dg~i~iwd~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~l~s~~~--dg~ 340 (581)
+||||+.|+.+.. +..|.+||..+... ...+..- ......++++|||++|++... +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 9999998877655 78899999987643 3333321 122347889999999997763 688
Q ss_pred EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeeE-ee-ccCcc--ccE-EEEEEee-CC
Q 008011 341 IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELE-SW-KGQKT--LRI-SDMAITD-DG 413 (581)
Q Consensus 341 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~-~~-~~~~~--~~v-~~i~~~~-~~ 413 (581)
|.+.|+.+++.+..+.... ...-...+.+. +.+-+.||......++. ++.. .. ...+. .++ ..-.+.+ +|
T Consensus 130 V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg 206 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD-CYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG 206 (352)
T ss_pred EEEEECCCCcEEEEEeCCC-CcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC
Confidence 9999999999998887543 22222222221 22333455444433321 1111 00 00000 000 0003455 77
Q ss_pred CEEEEEEcCCeEEEEECCCCe------eeeEe--------cCCceEEEEECCCCCEEEEEee----------CCcEEEEE
Q 008011 414 KRIISICREAAILLLDREANF------ERWIE--------EEEVITSFSLSKDNKYLLVNLI----------NQEIHLWS 469 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~------~~~~~--------~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd 469 (581)
+++.+... |.|++.|+.... ..... ..+.+.-++++|+++.+++... .+.|.++|
T Consensus 207 ~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 207 RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 77777666 999999965543 11111 1233445999999999988532 25799999
Q ss_pred ecCCCceeEEEeccccceeEEEeeeCCCCCc-EEEEEe-CCCcEEEEeCCCCceEEEec
Q 008011 470 IESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGS-EDSQVYIWHRYTGELVLALA 526 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~l~ 526 (581)
..+. +.+..+..... ...+.++++++ +|++.+ .++.|.++|..+++.+.++.
T Consensus 286 ~~t~-kvi~~i~vG~~----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 286 AKTG-KRLRKIELGHE----IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCC-eEEEEEeCCCc----eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9888 66665553222 22223389999 887766 57889999999999998873
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=5.2e-10 Score=112.09 Aligned_cols=284 Identities=14% Similarity=0.215 Sum_probs=184.1
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCe-eeEEEeecCCCCCeEEEEeCCCC--CeEEEeeCCCcEEEEECCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPND--HQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~--~~l~s~~~dg~i~vwd~~~ 348 (581)
.+.+..+.++|.|+-+|.++.-| +.+-|+..... ...++.+ ..-.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc--CcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 45677889999999999998877 56667664322 1111111 12236778888743 2334444445566898753
Q ss_pred ---CcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe--eEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 349 ---GECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE--LESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 349 ---~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
...-..+.+|...|+.+.|.|.. ..+++++.|-.+..||+++.. +..+...+. .-..++|+-....+.+.+..
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccCcchhhhccC
Confidence 33445667899999999999854 467889999999999998633 344444443 56778898776677777888
Q ss_pred CeEEEEECCCCe---eeeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC-
Q 008011 423 AAILLLDREANF---ERWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF- 497 (581)
Q Consensus 423 g~i~i~d~~~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 497 (581)
..|.+||.+.+. .....+-..+.+++|.. ....+.+++.|++|++||.....+.-........++ +..++.+.
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi--w~~r~~Pfg 257 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI--WRGRYLPFG 257 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc--eeccccccC
Confidence 899999999877 34445666677777765 344678888999999999876433222222222222 22222111
Q ss_pred CCcEEEEEeCCCcEEE---------EeCCC-CceEEEeccCcCCEEEEEEcCCC---------CcEEEEEECCCcEEEEc
Q 008011 498 EQAFIASGSEDSQVYI---------WHRYT-GELVLALAGHSGSVNCVSWNPAN---------LHMLASASDDRTIRIWG 558 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~i---------wd~~~-~~~~~~l~~h~~~v~~l~~~p~~---------~~~l~s~s~Dg~I~iW~ 558 (581)
+|.++.-.-.+..+.+ |+..+ .+++.++.||...|....|-..+ ...|+|-+.|.++++|-
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 1222221111223333 33333 36789999999999888775432 15899999999999999
Q ss_pred CCC
Q 008011 559 LDQ 561 (581)
Q Consensus 559 ~~~ 561 (581)
+..
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 875
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=7.4e-08 Score=97.57 Aligned_cols=191 Identities=11% Similarity=0.100 Sum_probs=127.3
Q ss_pred cEEEEEEcCCCCE-EEEEECC---CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEe-eCC--CcEEEEEC
Q 008011 274 EVWFLQFSHDGKY-LASSSKD---QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTC-GQE--EAIRRWDV 346 (581)
Q Consensus 274 ~V~~l~~s~~g~~-lasgs~d---g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~-~~d--g~i~vwd~ 346 (581)
.+....|||||+. ++..+.+ ..|.++|+.++.. .. +....+......|+|||+.++.. +.+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~---lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EK---IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EE---EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 7788999999984 6654433 4588888876532 22 22345556678899999877654 333 46888898
Q ss_pred CCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC-
Q 008011 347 NSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE- 422 (581)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d- 422 (581)
.+++... +..+........|+|||+.|+..+.. + .|+++|+.++.......... ....|+|||+.++.....
T Consensus 265 ~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCC
Confidence 8876443 44443334456899999988776642 3 68888998877655443221 124899999998877654
Q ss_pred --------CeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCC---cEEEEEecC
Q 008011 423 --------AAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQ---EIHLWSIES 472 (581)
Q Consensus 423 --------g~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~ 472 (581)
..|.+.|+.++....+..........|+|||+.++..+..+ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 37888998887744443333445689999999888776532 355555544
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=2.3e-07 Score=102.41 Aligned_cols=303 Identities=13% Similarity=0.148 Sum_probs=186.4
Q ss_pred cEEEEEEcCCCCE--EEEEECCC--eEEEEEcccCCeeeEEEeec-----CCCCCeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 274 EVWFLQFSHDGKY--LASSSKDQ--SAIIWEVKEDGQVSLKHRLS-----GHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 274 ~V~~l~~s~~g~~--lasgs~dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
.+...+|.+.... ++++.... .|.+..............+. ...+.|.++.+.++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 4566666665543 33333222 34444443333222333332 334679999999999999999999999999
Q ss_pred ----ECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-------------C-----------eeEee
Q 008011 345 ----DVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-------------R-----------ELESW 396 (581)
Q Consensus 345 ----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------------~-----------~~~~~ 396 (581)
+..+.. +.....-+.+|.+++|+||+..|+..+.++++.+.+-+- + +..++
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF 181 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF 181 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc
Confidence 544433 223334467899999999999999999999887764320 0 00000
Q ss_pred cc------------C-----------ccccEEEEEEeeCCCEEEEEEc---C---CeEEEEECCCCee-eeEecCCceEE
Q 008011 397 KG------------Q-----------KTLRISDMAITDDGKRIISICR---E---AAILLLDREANFE-RWIEEEEVITS 446 (581)
Q Consensus 397 ~~------------~-----------~~~~v~~i~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~-~~~~~~~~i~~ 446 (581)
.+ . ....-..|+|-.||.++++.+- . ..+++|+.+..-. ......+--.+
T Consensus 182 ~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~ 261 (928)
T PF04762_consen 182 HGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGA 261 (928)
T ss_pred CcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCC
Confidence 00 0 1123457889999999998875 2 4789999874331 22233344567
Q ss_pred EEECCCCCEEEEEee---CCcEEEEEecCCCceeEEEeccc-cceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCce-
Q 008011 447 FSLSKDNKYLLVNLI---NQEIHLWSIESDPKLVSRYKGHK-RARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL- 521 (581)
Q Consensus 447 ~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~- 521 (581)
++|.|.|+++++... ...|.+|.-... .-..|.-.. .....+....|++++..||..-.|. |.+|-..+..-
T Consensus 262 l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY 338 (928)
T PF04762_consen 262 LSWRPSGNLIASSQRLPDRHDVVFFERNGL--RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY 338 (928)
T ss_pred ccCCCCCCEEEEEEEcCCCcEEEEEecCCc--EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE
Confidence 899999999998775 345677765443 222232221 1122345566699999999987666 99999877542
Q ss_pred -EEEecc-CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc---cccCCCceEEecCCC
Q 008011 522 -VLALAG-HSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK---HRDQSNGIVHHCNGR 580 (581)
Q Consensus 522 -~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~---~~~~~~~~~~~~~G~ 580 (581)
...+.. ....+..+.|+|..+..|...+.+|.+..+++.-.... ......+.+..-||+
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~ 402 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN 402 (928)
T ss_pred EEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC
Confidence 223332 23345669999998888888888788766554321111 112245556666664
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.7e-07 Score=94.90 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=131.1
Q ss_pred CeEEEEeCCCCCe-EEEeeCC---CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe-C--CCcEEEEeCCCC
Q 008011 319 PVFTVSWSPNDHQ-LLTCGQE---EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM-T--DKSICLWDLDGR 391 (581)
Q Consensus 319 ~V~~l~~sp~~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~--dg~i~iwd~~~~ 391 (581)
.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++... . +..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999985 6544443 469999998887655443 444566788999998876543 2 347888898887
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEcC-C--eEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeC------
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICRE-A--AILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLIN------ 462 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------ 462 (581)
....+..... ......|+|||+.|+..+.. + .|+++|+.++........+.. ...|+|||++++.....
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC
Confidence 7666544332 23456899999988877643 2 688889988774222222212 35899999998887654
Q ss_pred ---CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC---cEEEEeCCCCceEEEeccCcCCEEE
Q 008011 463 ---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS---QVYIWHRYTGELVLALAGHSGSVNC 534 (581)
Q Consensus 463 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~v~~ 534 (581)
..|.+.|+.++ . .+.+...... . ...|+|+|+.|+..+.++ .+.+.++. |.....+....+.+..
T Consensus 346 ~~~~~I~v~d~~~g-~-~~~LT~~~~~---~-~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 346 KNTFNLYLISTNSD-Y-IRRLTANGVN---Q-FPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQS 416 (419)
T ss_pred CCCcEEEEEECCCC-C-eEECCCCCCc---C-CeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence 26788888775 2 2333332111 1 233489999876665433 46666764 4444444433444443
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=3.6e-08 Score=87.69 Aligned_cols=257 Identities=10% Similarity=0.012 Sum_probs=164.8
Q ss_pred CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-----CCCeEEEeeCCCcEEEEECCCCcE-EEEEecCCCeEEEE
Q 008011 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNSGEC-LHVYEKTGVGLISC 365 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~ 365 (581)
....+-+|+..++.+ ...... ..+.|-| ...+||.||..|...+|...+.+. .+....+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 344577888775531 111211 3344544 456899999999999999986543 33333443333222
Q ss_pred EE-ecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee-----eeEe
Q 008011 366 GW-FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE-----RWIE 439 (581)
Q Consensus 366 ~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~ 439 (581)
.- ......+..++.|.++++.+++.+..........-.+.++++++|++++++.+....|..|.+..... ....
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 11 11233577788999999999876554433333323488999999999999999999999999877652 2223
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe----ccccceeEEEeeeCCCCCc--EEEEEeCCCcEEE
Q 008011 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK----GHKRARFVIRSCFGGFEQA--FIASGSEDSQVYI 513 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~l~sgs~dg~I~i 513 (581)
....-.+..|+.....+++++.||++.|||++....+..... .|.+ .++.|-+++.|. +|+..-.=+.+.+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG---a~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG---AFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC---ceEEEEecCCCcceEEEEecCcceEEE
Confidence 445567889999999999999999999999988655443322 2333 356666565543 3444444568999
Q ss_pred EeCCCCceEEEec-------cCc-CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 514 WHRYTGELVLALA-------GHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 514 wd~~~~~~~~~l~-------~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
.|+++++....+. .|. ..|..-.|+.++. -+.+.+.+ .+.-|++..
T Consensus 279 ~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~-s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE-SNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEcccCceeeEEecCccccccccccccccccccCCCc-ccccccch-hhheeeccc
Confidence 9999886554432 232 3477888888774 44444433 344455543
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=1.5e-07 Score=85.23 Aligned_cols=239 Identities=17% Similarity=0.153 Sum_probs=125.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEee---cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE
Q 008011 277 FLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRL---SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 277 ~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.++.+.||+.||.- .|..|.|=...++-. ..+... +...-.=+.++||||+.+||.+...|+|+++|+.. ..+.
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence 46778899988876 567777776553211 111111 22222356799999999999999999999999875 4444
Q ss_pred EEecCC-------CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 354 VYEKTG-------VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 354 ~~~~~~-------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.+.... ..|..+.|.+.. . +..|+ ..|++....|.++
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~------------------~---------------s~~ws---~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYK------------------K---------------SAQWS---YELLVINYRGQLR 122 (282)
T ss_pred EcCcccccCCccccceeeeEeeccc------------------c---------------ccccc---eeEEEEeccceee
Confidence 443221 223333332210 0 00110 0122222223222
Q ss_pred EEECCC--Ce-----e--ee-EecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCC
Q 008011 427 LLDREA--NF-----E--RW-IEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 427 i~d~~~--~~-----~--~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 496 (581)
-|-+.. .+ . .+ ......|.++.++|..+.|++|+.... +.+ . -..........+..-..
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~--s~a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---M--SKASSCGLTAWRILSDS 191 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---c--ccccccCceEEEEcCCC
Confidence 222211 00 0 01 112456778888887777777664322 000 0 00111112222222223
Q ss_pred CCCcEEEEEeCCC------cEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 497 FEQAFIASGSEDS------QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 497 ~~~~~l~sgs~dg------~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
|..+.+. ..+|+ +-.+|.+-+.+...........|..|..+||| .+||+...+|.|.+|++....++..
T Consensus 192 Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 192 PYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhhcc
Confidence 3222222 22221 12344443333333223346789999999999 7999999999999999998877654
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.1e-08 Score=96.14 Aligned_cols=199 Identities=14% Similarity=0.181 Sum_probs=137.2
Q ss_pred ccCcEEEEEEcCCCC--EEEE-----EECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeE-EE--eeCC--
Q 008011 271 HSDEVWFLQFSHDGK--YLAS-----SSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQL-LT--CGQE-- 338 (581)
Q Consensus 271 h~~~V~~l~~s~~g~--~las-----gs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-~s--~~~d-- 338 (581)
|...|+.+.+||.+. .+|+ +|.-+.|+||.............-.-....=..+.|++-|.-| +. ..-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 678899999999743 4554 3455679999886322211111111111222367888866532 22 2223
Q ss_pred -------CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEE--EeCCCcEEEEeCCCCeeEeeccCccccEEEEEE
Q 008011 339 -------EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFA--GMTDKSICLWDLDGRELESWKGQKTLRISDMAI 409 (581)
Q Consensus 339 -------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 409 (581)
.++++.++....+...+ ...++|.++.|+++++.+++ |-.-..+.+||++...+..+..+ +-+++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---CccceEE
Confidence 35788887733333333 44679999999999987665 44567899999998877665544 5678999
Q ss_pred eeCCCEEEEEEc---CCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEee------CCcEEEEEecCC
Q 008011 410 TDDGKRIISICR---EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI------NQEIHLWSIESD 473 (581)
Q Consensus 410 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~ 473 (581)
+|.|++++.++- .|.+-+||+.+.+......-..-+-+.|+|||.+|++++. |+.++||+....
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999988875 4789999999966444444455677899999999999876 688999998774
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.1e-07 Score=91.13 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=149.7
Q ss_pred cCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCC--------CCCeEEEE-eCC-CCCeEEEeeCCCcEEEEECCCCc
Q 008011 281 SHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGH--------RKPVFTVS-WSP-NDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 281 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h--------~~~V~~l~-~sp-~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
+.||+.++.. ..|.|.+||.++..--++...+.-. ..+...+. |++ +|.+++..+. |...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4577766653 4678999998764321111111111 11112222 444 6888888775 677777766555
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCC-cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDK-SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
.++. ++...|.-..+..++..++.|..|| .+-++|.++++.......-. .|.++..+++|+.++++.....+.++|
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4443 4556687778888888999999999 89999999999877766554 899999999999999999999999999
Q ss_pred CCCCeeeeE--ecCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEE
Q 008011 430 REANFERWI--EEEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 430 ~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
+.++..+.+ ...+-|+.+.|+|++++++.+.-+| .|++||+.++ +....-. ... +...-+| .|++++|.
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT-~ta--~DfsPaF-D~d~ryLY 504 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTT-PTA--YDFSPAF-DPDGRYLY 504 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecC-Ccc--cccCccc-CCCCcEEE
Confidence 999985554 4566799999999999999987765 6899999886 3332211 111 1122233 67777665
Q ss_pred EEe
Q 008011 504 SGS 506 (581)
Q Consensus 504 sgs 506 (581)
--+
T Consensus 505 fLs 507 (668)
T COG4946 505 FLS 507 (668)
T ss_pred EEe
Confidence 443
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=8.7e-09 Score=93.32 Aligned_cols=244 Identities=17% Similarity=0.293 Sum_probs=165.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCC--eeeEEEeecCCC------------CCeEEEEeCCCC--CeEEE
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDG--QVSLKHRLSGHR------------KPVFTVSWSPND--HQLLT 334 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~V~~l~~sp~~--~~l~s 334 (581)
..+.|+++.|...|.||++|...|.|.+|.-.... +.+....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999999999999999999999765321 223334456664 347888887754 45777
Q ss_pred eeCCCcEEEEECCCCc------------------------------------------EEEEE-ecCCCeEEEEEEecCC
Q 008011 335 CGQEEAIRRWDVNSGE------------------------------------------CLHVY-EKTGVGLISCGWFLDG 371 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~~ 371 (581)
.+.|.+|++|.+.... +.+.+ ..|...+.++.+..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999875321 00011 2456667888888887
Q ss_pred CeEEEEeCCCcEEEEeCCC----CeeEeeccCc----cccEEEEEEeeC-CCEEEEEEcCCeEEEEECCCCe-----eee
Q 008011 372 GGIFAGMTDKSICLWDLDG----RELESWKGQK----TLRISDMAITDD-GKRIISICREAAILLLDREANF-----ERW 437 (581)
Q Consensus 372 ~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~----~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~ 437 (581)
..++++ .|=.|.+|+++- ..+....++. ..-|++..|+|. ...+...+..|.|++-|+++.. ...
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 566899998852 2223333222 124778888885 4566777889999999998543 111
Q ss_pred E-------------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc------------ceeEEEe
Q 008011 438 I-------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR------------ARFVIRS 492 (581)
Q Consensus 438 ~-------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~i~~ 492 (581)
. ..-..|..+.|+++|+++++-. --++++||++....++++...|.. .++.---
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1 1234578899999999998754 568999999988888888765532 1222112
Q ss_pred eeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 493 CFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+.++-+.+.+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 223667788888888877777753
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.2e-09 Score=98.89 Aligned_cols=250 Identities=15% Similarity=0.179 Sum_probs=179.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC-CCcEEEEECCCC
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-EEAIRRWDVNSG 349 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-dg~i~vwd~~~~ 349 (581)
|.+.|+.+..+ -.+++.+++.||.++.|.-..-.-...+..+..|...|.+++.+-++.++.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 78888887654 3569999999999999987643344566777889999999999999999999777 999999999876
Q ss_pred cEEEEEecCCCeEEEEEEec-CC--C-eEEE-EeCCCcEEEEeCCC--CeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 350 ECLHVYEKTGVGLISCGWFL-DG--G-GIFA-GMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~-~~--~-~l~s-g~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
..+..++...-+= .+.|.. .| . .+++ .-.++.+.++|-.. .+...+...|..+|.++.+++-+..+++....
T Consensus 87 DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 5543332221111 122222 22 1 2333 33578999999754 35566677788899999999999999999999
Q ss_pred CeEEEEECCCCe-----------------eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc--
Q 008011 423 AAILLLDREANF-----------------ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-- 483 (581)
Q Consensus 423 g~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 483 (581)
|.|..|...... ..+.......+++.|+|++..+.+-..|..|+++++.++ +.++.+...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccch
Confidence 999999987411 112234566889999999999999999999999999886 333222100
Q ss_pred -----------------------------ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 484 -----------------------------KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 484 -----------------------------~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
.+.......+| ...+++|+-|+-=| |++.++.++.+.+.+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f-des~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF-DESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE-cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 01112233444 67889998887766 889998888776655
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.2e-09 Score=106.05 Aligned_cols=238 Identities=14% Similarity=0.262 Sum_probs=161.6
Q ss_pred EEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC-------CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 310 KHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS-------GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 310 ~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
...+.+|...|..++--.+.+.+++++.|.+|++|.++. ..|..++..|+.+|.++.|..+.+.+++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 345789999999888777888999999999999999853 3477888999999999999988777665 5889
Q ss_pred EEEEeCCCCeeEe-ec-cCccccEEEEEEee--CCCEEEEE-EcCCeEEEEECCCCe--eeeE-----ecCCceEEEEEC
Q 008011 383 ICLWDLDGRELES-WK-GQKTLRISDMAITD--DGKRIISI-CREAAILLLDREANF--ERWI-----EEEEVITSFSLS 450 (581)
Q Consensus 383 i~iwd~~~~~~~~-~~-~~~~~~v~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~--~~~~-----~~~~~i~~~~~s 450 (581)
|.+||.--+.+.. .. ....+.+..+..-+ +...++++ +...+|+++|.+... ..+. ..+..+.+++.-
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999974332221 11 11112333333333 33444444 678899999998866 2221 234568899999
Q ss_pred CCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEE-EeCCCCceEEEeccCc
Q 008011 451 KDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI-WHRYTGELVLALAGHS 529 (581)
Q Consensus 451 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i-wd~~~~~~~~~l~~h~ 529 (581)
+.|++++++-.+|.|.+.|.+++ +.+..+......... .. .|....++....|.++.+ |..-.|....+.+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllq---la-apsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQ---LA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhh---hc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 99999999999999999999998 655555433322111 11 566778888888999999 9887776665555332
Q ss_pred CCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 530 GSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 530 ~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.+..-+. .-|+ -++++.....+.+|
T Consensus 961 epahflq--svgp-SLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 961 EPAHFLQ--SVGP-SLVTAQNGNILGVY 985 (1034)
T ss_pred cchhhhh--ccCc-eeEEeccCcEEEEE
Confidence 2221111 1132 34555555555555
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=5.5e-08 Score=86.54 Aligned_cols=219 Identities=8% Similarity=0.032 Sum_probs=140.5
Q ss_pred CCCcEEEEECCCCc--EEEEEecCCCeEEEEEEec-----CCCeEEEEeCCCcEEEEeCCCCeeEeec-cCccccEEEEE
Q 008011 337 QEEAIRRWDVNSGE--CLHVYEKTGVGLISCGWFL-----DGGGIFAGMTDKSICLWDLDGRELESWK-GQKTLRISDMA 408 (581)
Q Consensus 337 ~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~ 408 (581)
....+-+|++-+.. .+..+ ..+.|.| ...+|+.|+..|...+|...+.+..... ..+...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34456777765543 22222 2333443 4568999999999999999765432222 11111111110
Q ss_pred -EeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCc--eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE-Eecc-
Q 008011 409 -ITDDGKRIISICREAAILLLDREANFERWIEEEEV--ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGH- 483 (581)
Q Consensus 409 -~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~- 483 (581)
+......+..++.|.++++.++.........|... +.++++++|++++++.+....|..|.++.....+.. +...
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 01112346667788888888887776444444443 889999999999999999999999999876544443 2222
Q ss_pred ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceE-----EEeccCcCCEEEEEEcCCCCc-EEEEEECCCcEEEE
Q 008011 484 KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV-----LALAGHSGSVNCVSWNPANLH-MLASASDDRTIRIW 557 (581)
Q Consensus 484 ~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~-----~~l~~h~~~v~~l~~~p~~~~-~l~s~s~Dg~I~iW 557 (581)
....+.. .++.....+|++..||++.|||++..... .+-..|.+.+..+.|++.|+- +|...-.=+.+.+-
T Consensus 203 ~D~gF~~---S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 SDHGFYN---SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred CCCceee---eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 2232322 23677789999999999999998875432 223458999999999987652 33333344788888
Q ss_pred cCCCcCcc
Q 008011 558 GLDQINMK 565 (581)
Q Consensus 558 ~~~~~~~~ 565 (581)
|++++.-.
T Consensus 280 D~R~~~~~ 287 (344)
T KOG4532|consen 280 DTRNYVNH 287 (344)
T ss_pred EcccCcee
Confidence 88876643
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.6e-09 Score=98.15 Aligned_cols=170 Identities=18% Similarity=0.354 Sum_probs=133.9
Q ss_pred EEEEecC--CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------e
Q 008011 364 SCGWFLD--GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------E 435 (581)
Q Consensus 364 ~~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~ 435 (581)
.|+|+-+ +.+ ++.+.+..|-+-|+.++....+. ....|.++.|...++.+..|+++|.|..+|++... .
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466542 333 55566777888899887766655 33478889999989999999999999999998762 6
Q ss_pred eeEecCCceEEEEECC-CCCEEEEEeeCCcEEEEEecCCCce---eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcE
Q 008011 436 RWIEEEEVITSFSLSK-DNKYLLVNLINQEIHLWSIESDPKL---VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQV 511 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I 511 (581)
..+.|+..|+++..-. ++.+|++.+.+|.|.+||++.. +. +..+.||......+.... .+....|++++.|...
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-hcccceeeeeccccccccccccc-ccccceEEEccCeeEE
Confidence 6778999999998877 8889999999999999999875 44 889999988655554444 6677788899999999
Q ss_pred EEEeCCCCceEEEeccCcC----CEEEEEEc
Q 008011 512 YIWHRYTGELVLALAGHSG----SVNCVSWN 538 (581)
Q Consensus 512 ~iwd~~~~~~~~~l~~h~~----~v~~l~~~ 538 (581)
+||.+++|.++.+++-... .+.+++|.
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehh
Confidence 9999999999998875432 44555554
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=4.3e-07 Score=85.56 Aligned_cols=220 Identities=17% Similarity=0.136 Sum_probs=139.3
Q ss_pred CCcEEEEECCCCcEEEEEecCC--CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 338 EEAIRRWDVNSGECLHVYEKTG--VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
+|+|..||..+|+.+....... ....+. ..+++..+++++.++.|+.||..+++..-...... .+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccc
Confidence 6889999999999988886421 122211 23367788888999999999998777643333221 211112 334567
Q ss_pred EEEEEcCCeEEEEECCCCeeeeE-ecCC-----ceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccce-e
Q 008011 416 IISICREAAILLLDREANFERWI-EEEE-----VITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR-F 488 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~-~~~~-----~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~ 488 (581)
+++++.++.++.+|..++...+. .... .........++..++++..++.|..+|+.++ +.+..+....... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCc
Confidence 77777889999999999885444 1111 1222233334788888888999999999998 6666665533221 1
Q ss_pred E------EEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 489 V------IRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 489 ~------i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
. ........++ .++.++.++.+..+|..+++.+.... ...+..+ ..+++ ..|+.++.++.|..||+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCC
Confidence 0 0111112234 77777777764444999998764333 2333332 23455 46777779999999999998
Q ss_pred Cccc
Q 008011 563 NMKH 566 (581)
Q Consensus 563 ~~~~ 566 (581)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=7.1e-07 Score=90.76 Aligned_cols=256 Identities=11% Similarity=0.084 Sum_probs=155.5
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEE-EEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFT-VSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
+..++.++.+|.+.-+|.+++... ...... ..+.+ ... .+..++.+..++.+..+|..+|+.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVA---WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCc---ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 456777888999999999876432 222211 11211 111 24567777889999999999999887775431110
Q ss_pred -----EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc----c---cEEEEEEee--CCCEEEEEEcCCeEEEE
Q 008011 363 -----ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT----L---RISDMAITD--DGKRIISICREAAILLL 428 (581)
Q Consensus 363 -----~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~---~v~~i~~~~--~~~~l~~~~~dg~i~i~ 428 (581)
.+... .+..++.++.+|.+..+|..+++..-...... . ....+..+| .+..+++++.+|.+..+
T Consensus 194 ~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 194 TLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 01111 23467778889999999987765432111000 0 011111122 34577778889999999
Q ss_pred ECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCC--CCcEEEEEe
Q 008011 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF--EQAFIASGS 506 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~sgs 506 (581)
|..++...+.........+.. .+..+++++.++.+..+|..++ +.+-.......... .+| .+..|+.++
T Consensus 272 d~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~------~sp~v~~g~l~v~~ 342 (394)
T PRK11138 272 DLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLL------TAPVLYNGYLVVGD 342 (394)
T ss_pred ECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcc------cCCEEECCEEEEEe
Confidence 999988554433222222222 4667888888999999999887 33332221111100 011 256778899
Q ss_pred CCCcEEEEeCCCCceEEEeccCcCCEEE-EEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 507 EDSQVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~-l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.||.|++.|..+|+.+.........+.+ ..+. ++ .|+.++.||.|+.++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence 9999999999999998877644333332 2222 33 6888899999988764
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.4e-08 Score=102.00 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=168.4
Q ss_pred EEEEEEcCCC--CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCC-CCeEEEeeCCCcEEEEECCCCc-
Q 008011 275 VWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPN-DHQLLTCGQEEAIRRWDVNSGE- 350 (581)
Q Consensus 275 V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~l~s~~~dg~i~vwd~~~~~- 350 (581)
|-.+.|+|.. .+-++........||++.....-.....+.+|..+|+.+-|+|. ...+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4456677643 24444445556789998755444556678899999999999994 4679999999999999998764
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeeEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEE
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDD-GKRIISICREAAILLL 428 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~ 428 (581)
.+..+..-......+.|+-....+++.+....|.+||++. .....+...+...|+.+.|..- ...+.+.+.|++|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 4455555556677899998777778888888999999964 4444555556667888887653 3467888999999999
Q ss_pred ECCCCe---eeeEecCCceEEEEECCCCCEEEEEe-----------eCCcEEEEEecCCCceeEEEeccccceeEEEe--
Q 008011 429 DREANF---ERWIEEEEVITSFSLSKDNKYLLVNL-----------INQEIHLWSIESDPKLVSRYKGHKRARFVIRS-- 492 (581)
Q Consensus 429 d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~-- 492 (581)
|..... ........+|..-.+.|-|.-.++-- .++.-..|+..+...++..|.||...+....+
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 987655 45556666777666766443222211 12333445666666889999999875432111
Q ss_pred ---eeCC--CCCcEEEEEeCCCcEEEEeCCC
Q 008011 493 ---CFGG--FEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 493 ---~~~~--~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
|.+. ...-.|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1111 1223689999999999997654
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.7e-07 Score=90.28 Aligned_cols=254 Identities=14% Similarity=0.188 Sum_probs=160.4
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeC-----------CCcEEEEeC
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMT-----------DKSICLWDL 388 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----------dg~i~iwd~ 388 (581)
=+.+.|||.|.||+|-...| |.+|--.+-..++.|. | ..|.-+.|+|+.++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987765 8899765555555553 3 25778999999999998543 257999999
Q ss_pred CCCeeEeeccC---ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeC-
Q 008011 389 DGRELESWKGQ---KTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLIN- 462 (581)
Q Consensus 389 ~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d- 462 (581)
.++.+...... ....-.-..||.|+++++.... ..|.+|+..... ....-....|..+.|+|.++.|+.=+..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 98876554433 1112345689999999987766 678888877643 1222234568899999998888764431
Q ss_pred ----CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeC-------C---CcEEEEeCCCCceEEEeccC
Q 008011 463 ----QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE-------D---SQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 463 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~-------d---g~I~iwd~~~~~~~~~l~~h 528 (581)
..+.+..+.+. +.++.-.-+.-.. . -.+|-.+|.+|+.--. . ..+-|+.++....-...-.-
T Consensus 369 ~~~parvtL~evPs~-~~iRt~nlfnVsD--c-kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSK-REIRTKNLFNVSD--C-KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cCCcceEEEEecCcc-ceeeeccceeeec--c-EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 24556665554 3333332222211 1 1234567777764321 1 13445555443322222224
Q ss_pred cCCEEEEEEcCCCCcEEEEEEC--CCcEEEEcCCCcCcc-------cccCCCceEEecCCCC
Q 008011 529 SGSVNCVSWNPANLHMLASASD--DRTIRIWGLDQINMK-------HRDQSNGIVHHCNGRI 581 (581)
Q Consensus 529 ~~~v~~l~~~p~~~~~l~s~s~--Dg~I~iW~~~~~~~~-------~~~~~~~~~~~~~G~~ 581 (581)
...|...+|-|.|.++.+..+. ..++.+|.+++.... .....+.+.|+|.|++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRF 506 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcE
Confidence 5788999999999543333333 357899998842211 1234889999999985
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=8.9e-06 Score=76.93 Aligned_cols=215 Identities=14% Similarity=0.091 Sum_probs=140.7
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeC-CCCCeEEEeeCCCcEEEEECCCCcEEEE
Q 008011 277 FLQFSH-DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS-PNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 277 ~l~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
++.|.+ ++.++++--..+.|..|+..++. . ....+.+ ...+++. +++ .|+.+... .+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-~-~~~~~~~----~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-V-EVIDLPG----PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE-E-EEEESSS----EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe-E-EEEecCC----CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEE
Confidence 567888 67777777678999999987642 1 1122222 6677777 564 55555554 456669999866554
Q ss_pred Eec-----CCCeEEEEEEecCCCeEEEEeCC--------CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEE-EE
Q 008011 355 YEK-----TGVGLISCGWFLDGGGIFAGMTD--------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIIS-IC 420 (581)
Q Consensus 355 ~~~-----~~~~v~~~~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~ 420 (581)
... .......+++.++|+..++.... |.|..++.. ++....... -...+.++|+|+++.|+. -+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeeccc
Confidence 443 35678899999999876665543 568888887 454443332 236889999999997764 56
Q ss_pred cCCeEEEEECCCCe------eeeEecC---CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEE
Q 008011 421 REAAILLLDREANF------ERWIEEE---EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 421 ~dg~i~i~d~~~~~------~~~~~~~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
..+.|..+++.... ..+.... +....++++.+|++.++....+.|.++|.+ + +.+..+..... ....
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~--~~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVP--RPTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSS--SEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCC--CEEE
Confidence 67889999986322 1222222 247889999999988887889999999987 3 66666665523 3455
Q ss_pred eeeCCCCCcEEEEE
Q 008011 492 SCFGGFEQAFIASG 505 (581)
Q Consensus 492 ~~~~~~~~~~l~sg 505 (581)
++|..++.+.|+..
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 66666776655543
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.4e-07 Score=86.19 Aligned_cols=257 Identities=15% Similarity=0.148 Sum_probs=153.2
Q ss_pred EEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCC-eEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-Ce
Q 008011 296 AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDH-QLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GG 373 (581)
Q Consensus 296 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 373 (581)
|+..+..+- +....+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++|+|.-|. .+
T Consensus 175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence 455544332 23345677888999999999766 7888999999999999999999888887 689999998865 45
Q ss_pred EEEEeCCCcEEEEeCCCCe--eEeecc-CccccEEEEEE------eeCCCEEEEEEcCCeEEEEECCCCe-----eeeEe
Q 008011 374 IFAGMTDKSICLWDLDGRE--LESWKG-QKTLRISDMAI------TDDGKRIISICREAAILLLDREANF-----ERWIE 439 (581)
Q Consensus 374 l~sg~~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~i~~------~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~ 439 (581)
+++|..+|.|.+||++..+ +..... ....+|..++. .+.|..++....+ +..|...... ....+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC
Confidence 7778889999999997432 111111 11223444333 2334444444432 3344443322 12233
Q ss_pred cCCceEEEEECCCCCEEEEEeeCC----cEE---E-EEecCCCceeEEEecc---c-cceeEEEeeeCCCCCcEEEE-Ee
Q 008011 440 EEEVITSFSLSKDNKYLLVNLINQ----EIH---L-WSIESDPKLVSRYKGH---K-RARFVIRSCFGGFEQAFIAS-GS 506 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~----~i~---i-wd~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~s-gs 506 (581)
..+...++.+.+-.+.+++..... .++ . -|..++......-.++ . .........+..++.++|+. |.
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd 408 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD 408 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC
Confidence 455666777777666666554431 011 0 1111111111111111 1 11111112233455565554 45
Q ss_pred CCCcEEEEeCCCCceEEEeccCcCCEEEEEEcC-CCCcEEEEEECCCcEEEEcCC
Q 008011 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP-ANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p-~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
..+.+.+||..+++.+.++.-. .+|.+++... +++.+|++-. |..++||..+
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred CcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 5679999999999999988754 7888888554 4445666655 4578888754
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=2.3e-06 Score=87.00 Aligned_cols=270 Identities=8% Similarity=0.004 Sum_probs=159.2
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeE-----EEEeCC--CCCeEEEeeCCCcEEEEECCCCcEEEEEe
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-----TVSWSP--NDHQLLTCGQEEAIRRWDVNSGECLHVYE 356 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-----~l~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 356 (581)
+..+++++.+|.+.-+|..++... -...+........ .+.-.| ++..++.++.+|.+..+|.++|+.+....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 456667777788888888766432 1112221100000 000011 35577788889999999999999887776
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccE-----EEEEEeeCCCEEEEEEcCCeEEEEECC
Q 008011 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRI-----SDMAITDDGKRIISICREAAILLLDRE 431 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~~~~~dg~i~i~d~~ 431 (581)
........... .+..++++..++.+..+|..+++..-......... ..-.. .+..++.++.++.+..+|..
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 44321111111 24577788889999999998776543322211000 01111 13457778889999999998
Q ss_pred CCeeeeEec-CC--------ceEEEEECC--CCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc
Q 008011 432 ANFERWIEE-EE--------VITSFSLSK--DNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA 500 (581)
Q Consensus 432 ~~~~~~~~~-~~--------~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 500 (581)
++...+... .. ....+..+| .+..+++++.++.+..+|..++ +.+-........ .. ...+.
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~----~~---~~~~~ 295 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-QIVWKREYGSVN----DF---AVDGG 295 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-CEEEeecCCCcc----Cc---EEECC
Confidence 887333211 00 011112233 3556777788999999999887 433332211100 01 12456
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCc-CCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
.|+.++.+|.++.+|..+|+.+-....-. ....+.... + ..|+.++.||.|.+.|..+++...+..
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-N--GYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-C--CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 77888899999999999998765443211 112222222 3 367888999999999999998876543
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=2.6e-06 Score=80.18 Aligned_cols=219 Identities=15% Similarity=0.161 Sum_probs=133.2
Q ss_pred CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCC
Q 008011 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG 372 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 372 (581)
+|+|..||..++..+-. ..+..-.....+. ..+++..+++++.++.+..||..+|+.+..+..... +.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~-~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-YDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEE-EECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEE-EECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eeccc
Confidence 67888888876643211 1221111222211 223567788888999999999999999888775322 11111 23466
Q ss_pred eEEEEeCCCcEEEEeCCCCeeEee-ccCc---cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEec-CC-c---
Q 008011 373 GIFAGMTDKSICLWDLDGRELESW-KGQK---TLRISDMAITDDGKRIISICREAAILLLDREANFERWIEE-EE-V--- 443 (581)
Q Consensus 373 ~l~sg~~dg~i~iwd~~~~~~~~~-~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~--- 443 (581)
.+++++.++.|+.+|..+++..-. .... ...........++..++++..++.|..+|.+++...+... .. .
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 788888889999999877766443 2211 1112233344448889999999999999999988433221 11 1
Q ss_pred -------eEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 444 -------ITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 444 -------i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
+..-....++ .++++..++.+..+|+.++ +...... ... ..... ...+..+++++.++.|.+||+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg-~~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG-EKLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT-EEEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEEEET
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC-CEEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEEEC
Confidence 1222222344 7777777776444499887 3332222 222 11112 456677887779999999999
Q ss_pred CCCceEE
Q 008011 517 YTGELVL 523 (581)
Q Consensus 517 ~~~~~~~ 523 (581)
.+|+.+-
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998764
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=6.8e-08 Score=85.64 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=136.5
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEE------------EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL------------HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD 387 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 387 (581)
|+.+.++. ...|+++..++.+......++.+. +.+..+..+-.+-+.+-.++.+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55566553 345666666666665554443332 22332322222222223467899999999999999
Q ss_pred CCCCe-eEeeccCccccEEEEEEeeCCCEEEEEE-----cCCeEEEEECCCCe--eeeEecCCceEEEEECCCC-CEEEE
Q 008011 388 LDGRE-LESWKGQKTLRISDMAITDDGKRIISIC-----REAAILLLDREANF--ERWIEEEEVITSFSLSKDN-KYLLV 458 (581)
Q Consensus 388 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~-----~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~-~~l~~ 458 (581)
.+.-. +..........--+.++...++.+.++. .-+..+.|+++... .........|++++-+|.. ..+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 86411 1111111111222333344444444332 23445666666544 1222233449999999955 45667
Q ss_pred EeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEE--------------
Q 008011 459 NLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLA-------------- 524 (581)
Q Consensus 459 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-------------- 524 (581)
|+.||.+-+||.+....++..+..|+...+.+. |...++..|+++++||.+..||..+ +.+..
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~--FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH--FHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGD 274 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhhee--ccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCC
Confidence 788999999999998788888899998866654 4355778999999999999999753 22210
Q ss_pred -----------eccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 525 -----------LAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 525 -----------l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+..-...|+++.. -| ..|++|++-+.|++++
T Consensus 275 ~v~s~i~i~~ll~~~~~SinsfDV--~g-~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEITSLLPSRSLSINSFDV--LG-PCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeeeccccccceeeeeeec--cC-ceEEeccccceEEEec
Confidence 0011123344333 34 3788888888888765
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-07 Score=86.04 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=157.8
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc-----EEEEEecCC------------CeEEEEEEecCC--CeEEEE
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE-----CLHVYEKTG------------VGLISCGWFLDG--GGIFAG 377 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~sg 377 (581)
...|+++.|...|.+|++|...|.|.+|.-+... ....|+.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754432 122344442 357788888754 458888
Q ss_pred eCCCcEEEEeCCCCeeE-------------------------------------------eeccCccccEEEEEEeeCCC
Q 008011 378 MTDKSICLWDLDGRELE-------------------------------------------SWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 378 ~~dg~i~iwd~~~~~~~-------------------------------------------~~~~~~~~~v~~i~~~~~~~ 414 (581)
+.|.+|++|.+..+.+. .....|...++++.++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987432110 01124445678889998888
Q ss_pred EEEEEEcCCeEEEEECCCCe--ee---eEec-----CCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCce---eEEE
Q 008011 415 RIISICREAAILLLDREANF--ER---WIEE-----EEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKL---VSRY 480 (581)
Q Consensus 415 ~l~~~~~dg~i~i~d~~~~~--~~---~~~~-----~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~---~~~~ 480 (581)
.++++ .|-.|.+|++.-.. .. ..++ ...|++..|+|. ...+...+..|.|++-|++...-+ .+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77765 56788899876543 11 1122 245889999994 566777788999999999842111 1111
Q ss_pred e---------ccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC-ceEEEeccCc------------CCEE---EE
Q 008011 481 K---------GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG-ELVLALAGHS------------GSVN---CV 535 (581)
Q Consensus 481 ~---------~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~------------~~v~---~l 535 (581)
. .....+..|.-.-++++|++|++-+. -+|+|||++.. .++.++.-|. ..|. .+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 1 11122233444555889999986554 47999998754 4666665442 2333 46
Q ss_pred EEcCCCCcEEEEEECCCcEEEEcC
Q 008011 536 SWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.|+.+. ..+.+|+..+..-|+-.
T Consensus 344 sfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCc-ccccccccccceeeecc
Confidence 788877 57788887777777663
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=9.1e-08 Score=90.14 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=111.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcccCCe-eeEEEeecCCCCCeEEEEeCCCCCeEEEe---eCCCcEEEEECCCCc
Q 008011 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ-VSLKHRLSGHRKPVFTVSWSPNDHQLLTC---GQEEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~l~s~---~~dg~i~vwd~~~~~ 350 (581)
++.+..++.+++||.+..+....++++....+ .++...... ...-+++.|..+......+ +....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556778888888888888777777765443 223222221 2223444444444444444 444556666666554
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-CCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEE
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-GRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLD 429 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d 429 (581)
+.. +-+|-.-++.++|+||+++++++..|..|++-... ...+..+..+|..-|..++..++. .|++++.|++|++||
T Consensus 144 ~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred cch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 433 44888889999999999999999999999998775 455566667788889999988765 489999999999999
Q ss_pred CCCCe
Q 008011 430 REANF 434 (581)
Q Consensus 430 ~~~~~ 434 (581)
+.++.
T Consensus 222 ~~sgk 226 (390)
T KOG3914|consen 222 ITSGK 226 (390)
T ss_pred cccCC
Confidence 99886
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=2.8e-06 Score=77.19 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=116.6
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEE---ee-cCCCCCeEEEEeCCC------CCeEEEeeCCCcEEE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKH---RL-SGHRKPVFTVSWSPN------DHQLLTCGQEEAIRR 343 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~---~~-~~h~~~V~~l~~sp~------~~~l~s~~~dg~i~v 343 (581)
.=.-++||||+.+||.+...|+|+++|+....-+ .+. .+ ..-..+|..|.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3457899999999999999999999999743211 111 01 112356777777652 225777788888888
Q ss_pred EECCCC-----cEEEEEec---CCCeEEEEEEecCCCeEEEEeCCCc-----------EEEEeCCCCeeEeeccCccccE
Q 008011 344 WDVNSG-----ECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKS-----------ICLWDLDGRELESWKGQKTLRI 404 (581)
Q Consensus 344 wd~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~-----------i~iwd~~~~~~~~~~~~~~~~v 404 (581)
|-+..+ +..+.+.. ....|.++.|+|..+.|++|+.... +..|.+-... +-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----------Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----------PY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----------Cc
Confidence 776432 33444432 3678999999999888888775322 2233321111 00
Q ss_pred EEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec
Q 008011 405 SDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
.-.....+...-...... .++.+-+.. .........|..|..||||..|++...+|.|.+|++.+- .....+..
T Consensus 194 yk~v~~~~~~~~~~~~~~---~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~ 269 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRR---GLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQ 269 (282)
T ss_pred EEEccccCcccccccccc---ceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccch
Confidence 000001001110111111 122222211 111234677999999999999999999999999999876 45555444
Q ss_pred ccc
Q 008011 483 HKR 485 (581)
Q Consensus 483 ~~~ 485 (581)
...
T Consensus 270 ~eq 272 (282)
T PF15492_consen 270 DEQ 272 (282)
T ss_pred hhC
Confidence 433
No 306
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.74 E-value=1.2e-05 Score=80.24 Aligned_cols=264 Identities=15% Similarity=0.157 Sum_probs=147.9
Q ss_pred cCCCCEEEEE---------ECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 281 SHDGKYLASS---------SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 281 s~~g~~lasg---------s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
|||+++++.. +..+.+.|||+.++.. ..+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6888877764 2346789999987521 22222256788999999999998875 57899999887754
Q ss_pred EEEEecC-----------------CCeEEEEEEecCCCeEEEEeCCC---------------------------------
Q 008011 352 LHVYEKT-----------------GVGLISCGWFLDGGGIFAGMTDK--------------------------------- 381 (581)
Q Consensus 352 ~~~~~~~-----------------~~~v~~~~~~~~~~~l~sg~~dg--------------------------------- 381 (581)
.+.-... -..-..+.|+||+++|+....|.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 4322111 01224678999999988753321
Q ss_pred ---cEEEEeCCCCeeEeec-----cCccccEEEEEEeeCCCEEEEEE--cC---CeEEEEECCCCeee---eEecCCce-
Q 008011 382 ---SICLWDLDGRELESWK-----GQKTLRISDMAITDDGKRIISIC--RE---AAILLLDREANFER---WIEEEEVI- 444 (581)
Q Consensus 382 ---~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~~~~--~d---g~i~i~d~~~~~~~---~~~~~~~i- 444 (581)
.+.++|+.+++..... ......+..+.|.+++..++..- ++ ..+.++|..++... .......|
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 1344555544432211 12234678899999998444443 32 24667788766522 12222222
Q ss_pred --EEEEEC-CCCC-EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCc-EEEEEeCCC----cEEEEe
Q 008011 445 --TSFSLS-KDNK-YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQA-FIASGSEDS----QVYIWH 515 (581)
Q Consensus 445 --~~~~~s-p~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~sgs~dg----~I~iwd 515 (581)
....+. +++. ++.....+|.-+||-++......+.+....-.+. ....++++++ +.+++..++ .|+.-+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~--~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVT--SILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EE--EEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeec--ccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 245554 5555 4555556776666655544344444443333322 2333355544 445665533 566667
Q ss_pred CCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECC
Q 008011 516 RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDD 551 (581)
Q Consensus 516 ~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~D 551 (581)
+..+..+..+....+....+.|+|++..++.+++.-
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 763445556665444447999999996666666653
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=3.2e-05 Score=69.12 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=147.4
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
-|++++.|...|.+++.+..++.+.........- .+ .....+++..+..++.|++....|..+..++...+......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV--KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 3678899999999999999987543222222111 11 22345689999999999999999999999998877666655
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee-ccCccccEEE--EEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEe
Q 008011 363 ISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW-KGQKTLRISD--MAITDDGKRIISICREAAILLLDREANFERWIE 439 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~--i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 439 (581)
.+-+..|-...|+++...|.|.--.........+ ......++.. ++. +..+..++-||.+.-+|-...+.....
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~sG~qvwr~~ 215 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFDESGRQVWRPA 215 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEcCCCcEEEeec
Confidence 5666667455667677777666555544322111 1111112211 111 334556667777777774333333333
Q ss_pred cCCceEE-EEEC-CCCCEEEEEeeCCc--------EEEEEecCCCceeEEEeccccceeEEEeeeCCC---CCcEEEEEe
Q 008011 440 EEEVITS-FSLS-KDNKYLLVNLINQE--------IHLWSIESDPKLVSRYKGHKRARFVIRSCFGGF---EQAFIASGS 506 (581)
Q Consensus 440 ~~~~i~~-~~~s-p~~~~l~~~~~d~~--------i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~sgs 506 (581)
..++|.. -+-+ |..+.+..+..+.. -.+|..+.+ .....+...+ +++.+.++ ..+++..++
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s 289 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSPK-----LRFDLHSPGISYPKLLRRSS 289 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCcc-----cceeccCCCCcchhhhhhhc
Confidence 3333321 1112 33344444433322 234554443 2222221111 11222122 246788899
Q ss_pred CCCcEEEEeCCCCceEEEeccCcCCEEEEE--------E-cC---CCCcEEEEEECCCcEEEEcCCCc
Q 008011 507 EDSQVYIWHRYTGELVLALAGHSGSVNCVS--------W-NP---ANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~--------~-~p---~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
.||.+.|.-.. +.+.....|.+.+..+. | +| +| .|+.|+.|..|+-||+++.
T Consensus 290 ~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 290 GDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred CCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence 99998887533 22444444444333322 2 12 34 6778889999999999864
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=2e-07 Score=87.85 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=114.5
Q ss_pred cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ce
Q 008011 403 RISDMAITDDGKRIISICREAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KL 476 (581)
Q Consensus 403 ~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~ 476 (581)
....+..++.++.++++..+....+++..... ..........+.+.+..+.....++..-|.++-+|+-... ..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34556677888888888888887777665543 1222334445556666666666666666666655554321 22
Q ss_pred eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-cCcCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008011 477 VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA-GHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
....-||-.. +.-+.++||+++|+++..|..|+|-.......+..+. ||..-|..++.-++. .|+|+|.|++|+
T Consensus 144 ~~~~lGhvSm---l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr 218 (390)
T KOG3914|consen 144 CEPILGHVSM---LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLR 218 (390)
T ss_pred cchhhhhhhh---hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEE
Confidence 3344466554 3344459999999999999999998877666665554 699999999998865 699999999999
Q ss_pred EEcCCCcCcccccC
Q 008011 556 IWGLDQINMKHRDQ 569 (581)
Q Consensus 556 iW~~~~~~~~~~~~ 569 (581)
+||+.+++..+...
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886544
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=3.8e-08 Score=63.05 Aligned_cols=38 Identities=29% Similarity=0.615 Sum_probs=36.1
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd 300 (581)
+++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46789999999999999999999999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=2e-05 Score=73.94 Aligned_cols=200 Identities=16% Similarity=0.240 Sum_probs=135.9
Q ss_pred EEEEcC-CCCEEEEEECCCe-EEEEEcccCCeeeEEEeecCCCCC--eEEEEeCCCCCeEEEeeC-----CCcEEEEECC
Q 008011 277 FLQFSH-DGKYLASSSKDQS-AIIWEVKEDGQVSLKHRLSGHRKP--VFTVSWSPNDHQLLTCGQ-----EEAIRRWDVN 347 (581)
Q Consensus 277 ~l~~s~-~g~~lasgs~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~l~s~~~-----dg~i~vwd~~ 347 (581)
.++.+| .+..++.+-.-|+ ..+||..++.... .+....+. --.-.||+||++|++.-. .|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 567778 5566777766665 6788888764332 22221111 123579999999998744 4789999998
Q ss_pred -CCcEEEEEecCCCeEEEEEEecCCCeEEEEeC------------------CCcEEEEeCCCCeeEeec----cCccccE
Q 008011 348 -SGECLHVYEKTGVGLISCGWFLDGGGIFAGMT------------------DKSICLWDLDGRELESWK----GQKTLRI 404 (581)
Q Consensus 348 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~------------------dg~i~iwd~~~~~~~~~~----~~~~~~v 404 (581)
+-+.+..+..+.-....+.+.||++.|+++.. +-++...|..++++.... ..+...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 66778888888877888999999988887632 234566666666655442 3355689
Q ss_pred EEEEEeeCCCEEEEEEcCC-------eEEEEECCCCe-------eeeEecCCceEEEEECCCCCEEEEEee-CCcEEEEE
Q 008011 405 SDMAITDDGKRIISICREA-------AILLLDREANF-------ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWS 469 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~~dg-------~i~i~d~~~~~-------~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd 469 (581)
..+++.++|..++..-..| -|.+++..... .........+-+|++++++.++++.+- .+.+.+||
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 9999999998777665443 24444444322 112234577999999999998866654 67899999
Q ss_pred ecCCCceeEEE
Q 008011 470 IESDPKLVSRY 480 (581)
Q Consensus 470 ~~~~~~~~~~~ 480 (581)
..++ ..+...
T Consensus 246 ~~tg-~~~~~~ 255 (305)
T PF07433_consen 246 AATG-RLLGSV 255 (305)
T ss_pred CCCC-CEeecc
Confidence 9887 554443
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=5.9e-06 Score=88.59 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=140.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC----
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV---- 346 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~---- 346 (581)
..+.|.++.|.-++.-++.+..+|.|.+-|..+. .......-...|.+++|+||...++..+..+++.+-+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 3478999999999999999999999999987753 22233445678999999999999999888887766432
Q ss_pred CC-------------------CcEEEEEecC---------------------CCeEEEEEEecCCCeEEEEe----CC-C
Q 008011 347 NS-------------------GECLHVYEKT---------------------GVGLISCGWFLDGGGIFAGM----TD-K 381 (581)
Q Consensus 347 ~~-------------------~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~sg~----~d-g 381 (581)
-. |+....|.+. ...=+++.|--||.++++.. .+ .
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 11 1111112111 11224589999999988832 23 7
Q ss_pred cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE---cCCeEEEEECCCCeee-----eEecCCceEEEEECCCC
Q 008011 382 SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC---REAAILLLDREANFER-----WIEEEEVITSFSLSKDN 453 (581)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-----~~~~~~~i~~~~~sp~~ 453 (581)
.|++||-+ +.+..........-.+++|-|.|..+++.. .++.|.++..+..... +......+..++|+.++
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 99999987 555544444444567899999999988874 4567999987765522 22333449999999999
Q ss_pred CEEEE---EeeCCcEEEEEecCC
Q 008011 454 KYLLV---NLINQEIHLWSIESD 473 (581)
Q Consensus 454 ~~l~~---~~~d~~i~iwd~~~~ 473 (581)
..|++ ......|++|-+.+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CceeeeecccccceEEEEEecCe
Confidence 99998 444556999998764
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=6.7e-08 Score=61.88 Aligned_cols=39 Identities=46% Similarity=0.921 Sum_probs=36.7
Q ss_pred CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 519 ~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
|+++.++.+|.+.|++++|+|++ .+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46789999999999999999998 7999999999999997
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=87.69 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=113.3
Q ss_pred EEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC----CceeEEEeccccceeEEEe
Q 008011 417 ISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD----PKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 417 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~i~~ 492 (581)
++.+.+..+-+.|+.++....+...+.|.++.|...++.+..|+.+|.|..+|++.. ..+...+ -|...+..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 455677788899999998777778889999999999999999999999999999875 2233333 23444333333
Q ss_pred eeCCCCCcEEEEEeCCCcEEEEeCCCCce---EEEeccCcCCEEEE--EEcCCCCcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 493 CFGGFEQAFIASGSEDSQVYIWHRYTGEL---VLALAGHSGSVNCV--SWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~~~~~---~~~l~~h~~~v~~l--~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
. ..++.+|++.+.+|+|.+||.+--++ +.++.||...-.-+ -.++.. ..++++|+|...|||.++.+.+...
T Consensus 307 L--q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 307 L--QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred h--ccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeec
Confidence 3 23678999999999999999887666 88888885433322 344555 5888999999999999999988766
Q ss_pred cC
Q 008011 568 DQ 569 (581)
Q Consensus 568 ~~ 569 (581)
.+
T Consensus 384 ip 385 (425)
T KOG2695|consen 384 IP 385 (425)
T ss_pred cC
Confidence 55
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=2.7e-05 Score=83.70 Aligned_cols=240 Identities=12% Similarity=0.118 Sum_probs=151.4
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC-----CC
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD-----GR 391 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~-----~~ 391 (581)
...|.++.|..+...++.+...|.|.+-|.++.... ....-..+|.+++|+||+..++..+..+++.+-+-. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 357999999999999999999999999988776532 333446789999999999999999888887764421 00
Q ss_pred ee-------------------EeeccC--------------------ccccEEEEEEeeCCCEEEEEE----cC-CeEEE
Q 008011 392 EL-------------------ESWKGQ--------------------KTLRISDMAITDDGKRIISIC----RE-AAILL 427 (581)
Q Consensus 392 ~~-------------------~~~~~~--------------------~~~~v~~i~~~~~~~~l~~~~----~d-g~i~i 427 (581)
.+ ..+.+. ....-+.|.|--||.++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00 011100 001223589999999998843 23 78999
Q ss_pred EECCCCe-eeeEecCCceEEEEECCCCCEEEEEee---CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEE
Q 008011 428 LDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLI---NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 428 ~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
||.+..- .......+.-.+++|-|.|..+++-.. ++.|.+|.-.....--..+.-...... +.-..|..++..|+
T Consensus 227 ~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~-ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE-VEELAWNSNSDILA 305 (1265)
T ss_pred ecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc-hheeeecCCCCcee
Confidence 9988322 222334455678999999999888643 567888876543111111111111111 22334477788887
Q ss_pred E---EeCCCcEEEEeCCCCce--EEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 504 S---GSEDSQVYIWHRYTGEL--VLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 504 s---gs~dg~I~iwd~~~~~~--~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
+ ......|++|-+.+-.- ...+.-..... +.|+|..++.+..-..+|.+.++++.
T Consensus 306 v~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 7 44455699998776432 22222222222 78888766666655577776665553
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=4e-07 Score=80.83 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=102.4
Q ss_pred eccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC-----CCcEE
Q 008011 268 LEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ-----EEAIR 342 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~-----dg~i~ 342 (581)
+..|+++-.+-+.+-.++.++++..||.+.+++.+.. +...+....-...-.+.+....++.+.+++. -+..+
T Consensus 85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 3345444444444455678999999999999998742 1111111111111112223334555554432 23466
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCCcEEEEeCCCCe-eEeeccCccccEEEEEEee-CCCEEEEE
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDKSICLWDLDGRE-LESWKGQKTLRISDMAITD-DGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~~~ 419 (581)
.|+++..+....-......|.+++-+|.. ..+++|+.||.+.+||.+... .......|..+++.+-|+| ++..|+++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 67665443332222333458888888854 456778899999999998653 3445566777899999998 56789999
Q ss_pred EcCCeEEEEECCC
Q 008011 420 CREAAILLLDREA 432 (581)
Q Consensus 420 ~~dg~i~i~d~~~ 432 (581)
+.||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999875
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.1e-05 Score=83.53 Aligned_cols=208 Identities=14% Similarity=0.182 Sum_probs=135.1
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-CeEEEEeCCC-----cEEEEeCCCC-
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-GGIFAGMTDK-----SICLWDLDGR- 391 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg-----~i~iwd~~~~- 391 (581)
.|+| |++.+..++.|+.+|.|.+.+ +.-+.++.+..+...+...-|.-++ ..|++.+.|+ .|++|+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 567888999999999998887 3344457777776663333344444 5777766654 4899999521
Q ss_pred --e---eE---eec----cCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCC------eeeeEecCCceEEEEECCCC
Q 008011 392 --E---LE---SWK----GQKTLRISDMAITDDGKRIISICREAAILLLDREAN------FERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 392 --~---~~---~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~sp~~ 453 (581)
. +. ... +....++.+++++.+-+.+|+|-.+|.|..+.-+-. .........+|+.+++..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1 11 111 123457899999999999999999999999854321 13344567899999999999
Q ss_pred CEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCC-CcEEEEEeCCCcEEEEeCCCCceEEEec-cCcCC
Q 008011 454 KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE-QAFIASGSEDSQVYIWHRYTGELVLALA-GHSGS 531 (581)
Q Consensus 454 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~ 531 (581)
+.++.......|.+|.+.+.......+..+... +.|..+++. +.++++++ .-+++|+....++...+. +|...
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~---lnCss~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS---LNCSSFSDGTYQFICAGS--EFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCcc---ceeeecCCCCccEEEecC--ceEEEEcCCCcceeeeecCCCeEE
Confidence 885555557789999998664223334444433 333332333 33444443 359999988777777777 66654
Q ss_pred EEE
Q 008011 532 VNC 534 (581)
Q Consensus 532 v~~ 534 (581)
...
T Consensus 259 ~~~ 261 (933)
T KOG2114|consen 259 MLV 261 (933)
T ss_pred EEE
Confidence 433
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4.1e-08 Score=100.74 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=96.6
Q ss_pred ccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC--
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE-- 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg-- 339 (581)
++...++..|+...+|++|+-+.+.|+.|+..|.|+++++.++ .......+|..+|+.+.-+.+|..+++.+.-.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCc
Confidence 3456778899999999999999999999999999999999987 34466789999999999999998877765433
Q ss_pred cEEEEECCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee
Q 008011 340 AIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL 393 (581)
Q Consensus 340 ~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 393 (581)
-..+|++.+ +...+.|.. -.++.|+.....-+.|+......+||+.++..
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 467899854 445555543 34677776555555666667788999987554
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.2e-06 Score=84.42 Aligned_cols=204 Identities=14% Similarity=0.217 Sum_probs=141.2
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCC-eEEEEeCCCCCeEEEeeCCCc-----EEEEECC
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKP-VFTVSWSPNDHQLLTCGQEEA-----IRRWDVN 347 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~l~s~~~dg~-----i~vwd~~ 347 (581)
.|+| |++.+..+|.|+.+|.|.+.+-. +.....+..+... |..+....+..+|++.+.|+. ++||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4554 56888899999999988887642 3455677777777 555544444478888887754 8999986
Q ss_pred CC------cEE---EEEe--c--CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC----CCeeEeeccCccccEEEEEEe
Q 008011 348 SG------ECL---HVYE--K--TGVGLISCGWFLDGGGIFAGMTDKSICLWDLD----GRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 348 ~~------~~~---~~~~--~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~ 410 (581)
.- .++ +.+. . ...++.+++.+.+-+.+++|-.+|.|..+.-+ .+...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 32 334 2221 1 25678889999999999999999999998532 122223333444589999999
Q ss_pred eCCCEEEEEEcCCeEEEEECCCCe--e-eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-cccc
Q 008011 411 DDGKRIISICREAAILLLDREANF--E-RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKR 485 (581)
Q Consensus 411 ~~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~ 485 (581)
.+++.++.+.....|.+|.+.+.. . ....++....|..+++....+++++ +..+.+||.... .+...+. ++..
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCeE
Confidence 999885555666778888887555 2 3456777888989887665466555 678999998865 4444554 5543
No 319
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.57 E-value=0.00025 Score=68.82 Aligned_cols=270 Identities=16% Similarity=0.156 Sum_probs=138.0
Q ss_pred EEcCCCCEEEEEE-CCCe--EEEEEcccCCeeeEEEeecCCCC-CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEE
Q 008011 279 QFSHDGKYLASSS-KDQS--AIIWEVKEDGQVSLKHRLSGHRK-PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 279 ~~s~~g~~lasgs-~dg~--i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
+|.+||+.|+.++ .||. +.+-|+.++ .+..+....+ ......++|+++.++-......++-.|+.+.+....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 5788997665554 4555 555566654 2233443332 222466778888887666667899999999988777
Q ss_pred EecCCCeEEEEEEec--CCCeEEEEeC----------------------CCcEEEEeCCCCeeEeeccCccccEEEEEEe
Q 008011 355 YEKTGVGLISCGWFL--DGGGIFAGMT----------------------DKSICLWDLDGRELESWKGQKTLRISDMAIT 410 (581)
Q Consensus 355 ~~~~~~~v~~~~~~~--~~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 410 (581)
+......+-...|.. |+..++-.-. ...|...|+.+++........ ..+..+.++
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fs 196 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFS 196 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccC
Confidence 777777666566643 4444332211 234666688888776665544 378889999
Q ss_pred eCCCEEEEEEcCC-------eEEEEECCCCeeee---EecCCceEEEEECCCCCEEEEEee-----CCcEEEEEecCCCc
Q 008011 411 DDGKRIISICREA-------AILLLDREANFERW---IEEEEVITSFSLSKDNKYLLVNLI-----NQEIHLWSIESDPK 475 (581)
Q Consensus 411 ~~~~~l~~~~~dg-------~i~i~d~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~ 475 (581)
|....+++-|..| .|-+.+........ ......+..=-|.|||..+..-+. +..|.-+|+.+...
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 9877777776544 34444444333211 122334555678999987766433 23466667776522
Q ss_pred eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC----------------cEEEEeCCCCceEEEeccCc----------
Q 008011 476 LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS----------------QVYIWHRYTGELVLALAGHS---------- 529 (581)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg----------------~I~iwd~~~~~~~~~l~~h~---------- 529 (581)
....... . .... ..+++|++++.=+.|. -|++++...++.. .+..|.
T Consensus 277 -~~~~~~p--~--~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 277 -RRLMEMP--W--CSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDR 349 (386)
T ss_dssp -EEEEEE---S--EEEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBS
T ss_pred -eEEEeCC--c--eeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCC
Confidence 2212111 1 1222 2278888887655442 5677888766543 122221
Q ss_pred C-CEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 530 G-SVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 530 ~-~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
. .=-...|+||+..+|.++...|...||-++
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1 124678999998888888889988887654
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=3e-05 Score=72.79 Aligned_cols=192 Identities=16% Similarity=0.123 Sum_probs=133.0
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEE-----CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee-
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSS-----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG- 336 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~- 336 (581)
..-.-|.|| -.||+||++|++.- ..|.|-|||.. ..+..+..+..|.-.-..+.+.||++.|+++-
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 334445566 56999999999863 35889999997 34577778888877788899999998877762
Q ss_pred -----------------CCCcEEEEECCCCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeCCC-------cEEEEeC
Q 008011 337 -----------------QEEAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDK-------SICLWDL 388 (581)
Q Consensus 337 -----------------~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg-------~i~iwd~ 388 (581)
.+..+...|..+|+.+.... .|...+..+++.++|..++..-..| -|.+++.
T Consensus 119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~ 198 (305)
T PF07433_consen 119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR 198 (305)
T ss_pred CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC
Confidence 12346677788888776633 3677899999999987666654443 2444443
Q ss_pred CCCeeEeec------cCccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEee
Q 008011 389 DGRELESWK------GQKTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 389 ~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
... +.... ..-...+-+|++++++..+++.+ ..+.+.+||..++.......-..+..++..+++ ++++ +.
T Consensus 199 g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s-sG 275 (305)
T PF07433_consen 199 GGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS-SG 275 (305)
T ss_pred CCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe-CC
Confidence 321 11111 11234799999999998876555 677899999999986666666667788877777 4444 33
Q ss_pred CCcE
Q 008011 462 NQEI 465 (581)
Q Consensus 462 d~~i 465 (581)
.|.+
T Consensus 276 ~G~~ 279 (305)
T PF07433_consen 276 QGQL 279 (305)
T ss_pred CccE
Confidence 4443
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.55 E-value=9.4e-06 Score=81.08 Aligned_cols=253 Identities=18% Similarity=0.183 Sum_probs=146.5
Q ss_pred CCCCCeEEEee---------CCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee
Q 008011 326 SPNDHQLLTCG---------QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW 396 (581)
Q Consensus 326 sp~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 396 (581)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|++++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777766642 246799999999876544433 45677899999999988875 57899999876655444
Q ss_pred ccCc-----------------cccEEEEEEeeCCCEEEEEEcCC------------------------------------
Q 008011 397 KGQK-----------------TLRISDMAITDDGKRIISICREA------------------------------------ 423 (581)
Q Consensus 397 ~~~~-----------------~~~v~~i~~~~~~~~l~~~~~dg------------------------------------ 423 (581)
.... -..-..+-|+||+++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 3322 11335688999999988765431
Q ss_pred eEEEEECCCCeeeeE-------ecCCceEEEEECCCCCEEEEEeeCC-----cEEEEEecCCCceeEEEecccccee-EE
Q 008011 424 AILLLDREANFERWI-------EEEEVITSFSLSKDNKYLLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARF-VI 490 (581)
Q Consensus 424 ~i~i~d~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~-~i 490 (581)
.+.++|+.++..... .....+..+.|.+++..+++.-.+. .+.++|..++.............+. .-
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 244455555542111 1234578899999998454443322 4677788765332222221111110 01
Q ss_pred EeeeC-CCCCcEEEEEeCCC--cEEEEeCCCCceEEEeccCcCCEEE-EEEcCCCCcEEEEEECCC----cEEEEcCC-C
Q 008011 491 RSCFG-GFEQAFIASGSEDS--QVYIWHRYTGELVLALAGHSGSVNC-VSWNPANLHMLASASDDR----TIRIWGLD-Q 561 (581)
Q Consensus 491 ~~~~~-~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~~~v~~-l~~~p~~~~~l~s~s~Dg----~I~iW~~~-~ 561 (581)
...++ ..++.++.....|| .|++++...+. ...+....-.|+. +.|++++..+++++..++ .|..-+++ .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 12222 44556677777788 56666766555 4456655666755 678888766667777643 45555555 3
Q ss_pred cCcc---cccCCC-ceEEecCCCC
Q 008011 562 INMK---HRDQSN-GIVHHCNGRI 581 (581)
Q Consensus 562 ~~~~---~~~~~~-~~~~~~~G~~ 581 (581)
++.. ...... .+.++|+|++
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSE
T ss_pred CCeEeccCCCCCceEEEECCCCCE
Confidence 3332 223344 7899999873
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.5e-05 Score=74.02 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=137.5
Q ss_pred ccceeeeccccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC-CeEEEeeCCC
Q 008011 262 SQTLQILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEE 339 (581)
Q Consensus 262 ~~~~~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg 339 (581)
.+..+.+.+|...|..++|||..+ ++..++.+.+|+|.|+++. .....+..| ..+++++|.-|. ++|..|..+|
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 344567788999999999999877 7888999999999999876 444556666 789999999865 5677888899
Q ss_pred cEEEEECCCCcEE-EEEec--CCCeEEEEEEe------cCCCeEEEEeCCCcEEEEeCCC--CeeEe-eccCccccEEEE
Q 008011 340 AIRRWDVNSGECL-HVYEK--TGVGLISCGWF------LDGGGIFAGMTDKSICLWDLDG--RELES-WKGQKTLRISDM 407 (581)
Q Consensus 340 ~i~vwd~~~~~~~-~~~~~--~~~~v~~~~~~------~~~~~l~sg~~dg~i~iwd~~~--~~~~~-~~~~~~~~v~~i 407 (581)
.|.|||++..+-. ..+.. ...+|..++.- +.+..++....+ +..|++.. ..... ......+...++
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeee
Confidence 9999999865421 11111 12344444332 334444444332 55666632 22211 112223355566
Q ss_pred EEeeCCCEEEEEEcCC-------eEEE-EECCCCeeee---Eec-CCc------eEEEEECCCCCEEEE-EeeCCcEEEE
Q 008011 408 AITDDGKRIISICREA-------AILL-LDREANFERW---IEE-EEV------ITSFSLSKDNKYLLV-NLINQEIHLW 468 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~---~~~-~~~------i~~~~~sp~~~~l~~-~~~d~~i~iw 468 (581)
++.+-.+.++...+.. .+-. .|...+.... ..+ +.. -..+.-.++.++++. +...+.+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 6666556555554331 0100 1111111000 000 111 111222344555544 4446789999
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCC-cEEEEEeCCCcEEEEeCC
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQ-AFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~sgs~dg~I~iwd~~ 517 (581)
|..+. ..+.++... .++.. .++..-++ .+|++-. |..++||..+
T Consensus 417 D~~s~-evvQ~l~~~-epv~D--icp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 417 DPHSF-EVVQTLALS-EPVLD--ICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccchh-heeeecccC-cceee--cceeecCCcchhhhee-cceEEEEecC
Confidence 99987 666666554 33333 33334443 4555544 5567777643
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=3.2e-06 Score=86.83 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=85.5
Q ss_pred EEEEEcCCCCEEEEEE----CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 276 WFLQFSHDGKYLASSS----KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 276 ~~l~~s~~g~~lasgs----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+-..|+|...++|.++ ..|.|.||--. +. ...-.+..-| +++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GE-Pqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GE-PQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecC-CC-CCccccccee---hhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3456888888888776 35788888533 21 1111122222 56799999988899998999999999888877
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 389 (581)
......|..+|..+.|+++|..++++..-|.|.+|..+
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77777899999999999999999999999999999875
No 324
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.49 E-value=0.00013 Score=70.81 Aligned_cols=253 Identities=13% Similarity=0.128 Sum_probs=135.0
Q ss_pred EeCCCCCeEEEeeC-CC--cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc
Q 008011 324 SWSPNDHQLLTCGQ-EE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK 400 (581)
Q Consensus 324 ~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 400 (581)
+|.+||+.|+.++. || .+.+.|+.+++..+.-.+.........++++++.++....+..|.-.|+++.+........
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56778876665554 44 5777799999877665544333335666788888877666778999999988776666655
Q ss_pred cccEEEEEEe--eCCCEEEEEEc----------------------CCeEEEEECCCCe-eeeEecCCceEEEEECCCCCE
Q 008011 401 TLRISDMAIT--DDGKRIISICR----------------------EAAILLLDREANF-ERWIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 401 ~~~v~~i~~~--~~~~~l~~~~~----------------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~ 455 (581)
...+-...|. .|+..++-.-. ...|...|+.++. .........+..+.|+|....
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 5455445553 45555443321 2457778888887 556677888999999996655
Q ss_pred EEEEeeCC-----cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEe-----CCCcEEEEeCCCCceEEEe
Q 008011 456 LLVNLINQ-----EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS-----EDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 456 l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs-----~dg~I~iwd~~~~~~~~~l 525 (581)
+++-+..| .-+||-+++.....+.+..+.. ...+..=||.++|..|.--+ .+..|.-+|..+++.....
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 55554443 2477887776566666655543 34555667799998765432 2446777888887654322
Q ss_pred ccCcCCEEEEEEcCCCCcEEEEEECCC----------------cEEEEcCCCcCccc---------------ccCCCceE
Q 008011 526 AGHSGSVNCVSWNPANLHMLASASDDR----------------TIRIWGLDQINMKH---------------RDQSNGIV 574 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~~~~l~s~s~Dg----------------~I~iW~~~~~~~~~---------------~~~~~~~~ 574 (581)
. ......+.-+++| .+++-=|.|. -|+++++..+.... .....++.
T Consensus 281 ~--~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 281 E--MPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp E--E-SEEEEEE-TTS-SEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred e--CCceeeeEEcCCC-CEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 2 2245566678888 5665444432 45667776655320 11367788
Q ss_pred EecCCC
Q 008011 575 HHCNGR 580 (581)
Q Consensus 575 ~~~~G~ 580 (581)
|+|||+
T Consensus 358 FSPDgk 363 (386)
T PF14583_consen 358 FSPDGK 363 (386)
T ss_dssp E-TTSS
T ss_pred cCCCCC
Confidence 999997
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=3.3e-06 Score=87.65 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=136.8
Q ss_pred CCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEE
Q 008011 328 NDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDM 407 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 407 (581)
++..++.|+....+..+|+++.+..+........|+-++. +++.+++|...|+|.+-|.++.+.......|.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4567888888888999999999888877766656666654 67899999999999999999998888888888788766
Q ss_pred EEeeCCCEEEEEEc---------CCeEEEEECCCCe-eeeEecCCceEEEEECCC-CCEEEEEeeCCcEEEEEecCCCce
Q 008011 408 AITDDGKRIISICR---------EAAILLLDREANF-ERWIEEEEVITSFSLSKD-NKYLLVNLINQEIHLWSIESDPKL 476 (581)
Q Consensus 408 ~~~~~~~~l~~~~~---------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~ 476 (581)
.. .|+.|++++. |..|++||++... ..-+.......-+.|.|. ...+++++..|...+.|..+...+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 54 5888998875 5568999999876 222233333355677773 567888999999999995443333
Q ss_pred -eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEe
Q 008011 477 -VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWH 515 (581)
Q Consensus 477 -~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd 515 (581)
...+..+.........++ ++++..++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDi-Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDI-SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEe-cCCCceEEEecccCcEeeec
Confidence 344444443333333444 88999999999999999997
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00055 Score=61.46 Aligned_cols=259 Identities=12% Similarity=0.081 Sum_probs=137.3
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEE
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLIS 364 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 364 (581)
.+++.|+..+.+.--|..+++-+ ....+ + ..|-+-+.- -|++++.|+..|.+.+.+..+|.....+..-..--..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~-We~il-g--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLI-WEAIL-G--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEE-eehhh-C--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 46666777777777776655321 11111 1 112221111 3678999999999999999999887777654332233
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe---eeeEecC
Q 008011 365 CGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF---ERWIEEE 441 (581)
Q Consensus 365 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~ 441 (581)
....+++..+..|+.|++.+..|.++....-.......-..+-++.+-...|..+...|.+.-...+... .......
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~ 178 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF 178 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence 4456789999999999999999998755443333333233444556644456666666766665555443 1111122
Q ss_pred CceEE--EEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEE-------
Q 008011 442 EVITS--FSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVY------- 512 (581)
Q Consensus 442 ~~i~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~------- 512 (581)
.++.+ ++ -+..+..++-||.+.-+| ..+ ..+.++.. .++++.- -+...|..+.|..+.++..+.
T Consensus 179 ~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG-~qvwr~~t-~GpIf~~-Pc~s~Ps~q~i~~~~~~Cf~~~~p~~gh 251 (354)
T KOG4649|consen 179 GPIFASPLC---VGSSVIITTVDGVLTSFD-ESG-RQVWRPAT-KGPIFME-PCESRPSCQQISLENENCFCAPLPIAGH 251 (354)
T ss_pred CccccCcee---ccceEEEEEeccEEEEEc-CCC-cEEEeecC-CCceecc-cccCCCcceEEEEecCCeEEEeccccce
Confidence 22211 11 133455556677666666 333 33333321 2222211 122124444555555554433
Q ss_pred -EEeCCCCceEEEeccCcCCEEEEEEcC-C--CCcEEEEEECCCcEEEEc
Q 008011 513 -IWHRYTGELVLALAGHSGSVNCVSWNP-A--NLHMLASASDDRTIRIWG 558 (581)
Q Consensus 513 -iwd~~~~~~~~~l~~h~~~v~~l~~~p-~--~~~~l~s~s~Dg~I~iW~ 558 (581)
+|..++|........ +-...+++. . .+.++..++.||.+.|-.
T Consensus 252 L~w~~~~g~t~~vy~~---p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~ 298 (354)
T KOG4649|consen 252 LLWATQSGTTLHVYLS---PKLRFDLHSPGISYPKLLRRSSGDGKVMILM 298 (354)
T ss_pred EEEEecCCcEEEEEeC---cccceeccCCCCcchhhhhhhcCCCcEEEEE
Confidence 454444433222211 001122211 1 135788889999999883
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=0.0001 Score=75.77 Aligned_cols=227 Identities=13% Similarity=0.127 Sum_probs=135.2
Q ss_pred EEEEECCCeEEEEEcccCCeeeEEEeecCCC-------------------------CCeEE--EEeC---CCCCeEEEee
Q 008011 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHR-------------------------KPVFT--VSWS---PNDHQLLTCG 336 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~-------------------------~~V~~--l~~s---p~~~~l~s~~ 336 (581)
+.||+..|.++|+-+.+...+..+..|.... +.... +++. .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5677788888888877665554444332110 00111 1111 1677777766
Q ss_pred C-CCcEEEEECCCCcEEEEEecC-CCeEEEEE-------------------EecCCCeEEE-EeCCCcEEEEeCCCCeeE
Q 008011 337 Q-EEAIRRWDVNSGECLHVYEKT-GVGLISCG-------------------WFLDGGGIFA-GMTDKSICLWDLDGRELE 394 (581)
Q Consensus 337 ~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~-------------------~~~~~~~l~s-g~~dg~i~iwd~~~~~~~ 394 (581)
. +..|..-++...++-+.+... ...+..++ +.|||+.+.. .-..+.+.+.|.++.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 445666666655554443321 11222222 2334443322 222355667777765543
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEE----------------------------------------cCCeEEEEECCC--
Q 008011 395 SWKGQKTLRISDMAITDDGKRIISIC----------------------------------------REAAILLLDREA-- 432 (581)
Q Consensus 395 ~~~~~~~~~v~~i~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~-- 432 (581)
....... ....++++++|+++++.+ .++.|.++|..+
T Consensus 229 ~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~ 307 (635)
T PRK02888 229 WQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAA 307 (635)
T ss_pred EEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccc
Confidence 3322222 445667788888777665 125588888887
Q ss_pred --C-e-eeeEecCCceEEEEECCCCCEEEEEee-CCcEEEEEecCCCc-----------eeEEEeccccceeEEEeeeCC
Q 008011 433 --N-F-ERWIEEEEVITSFSLSKDNKYLLVNLI-NQEIHLWSIESDPK-----------LVSRYKGHKRARFVIRSCFGG 496 (581)
Q Consensus 433 --~-~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~ 496 (581)
. . ...+........+.++|||+++++++. ++++.++|+.+... .+.......++ +...| .
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaF-D 383 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAF-D 383 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEE-C
Confidence 2 2 666778888999999999999888776 88999999987532 22333222222 33444 6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+|+...+-.-|..|..||+.+
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 7788888888999999999876
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=5.9e-06 Score=85.83 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=131.5
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
++..++-|+-...+..+|+.+.. ..+...-....|+-|.. +++++.+|...|+|.+-|..+.+.++++..|.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccce---eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 34567777777778888887542 22333333334666654 57899999999999999999999999999999988
Q ss_pred EEEEEecCCCeEEEEeC---------CCcEEEEeCCCCeeEeeccCccccEEEEEEeeC-CCEEEEEEcCCeEEEEE---
Q 008011 363 ISCGWFLDGGGIFAGMT---------DKSICLWDLDGRELESWKGQKTLRISDMAITDD-GKRIISICREAAILLLD--- 429 (581)
Q Consensus 363 ~~~~~~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~d--- 429 (581)
..+. -.|+.|++++. |..|+|||++......-...+. ...-+.|.|. ...+++++..|...+.|
T Consensus 221 SDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccc
Confidence 7655 46889998875 5568999998654433332222 2344566665 35788889999999999
Q ss_pred CCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 430 REANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 430 ~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
+.+.. .........+..++++++++.++.+..+|.|.+|.-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44432 233344555999999999999999999999999983
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.3e-06 Score=81.81 Aligned_cols=248 Identities=16% Similarity=0.144 Sum_probs=163.1
Q ss_pred CCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC--C-cEEEEEecCCCeEEEEEEecCCCeEEEEeC-CCcEEEEeCCC
Q 008011 315 GHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS--G-ECLHVYEKTGVGLISCGWFLDGGGIFAGMT-DKSICLWDLDG 390 (581)
Q Consensus 315 ~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~~ 390 (581)
-|...|+.+.-. ..+++.+++.||.++.|--.. | +.+..+..|-..+.+++.+.++..+.+.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777776544 467999999999999997543 1 334555677788888888889988999777 99999999975
Q ss_pred CeeEeeccCccc-cEEEEEEeeC-C--CEEEEEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeC
Q 008011 391 RELESWKGQKTL-RISDMAITDD-G--KRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 391 ~~~~~~~~~~~~-~v~~i~~~~~-~--~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
-..........- ...+...++. . ..-++.-.++.+.++|-.... ....-|..+|..+.+.|-+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 443311111110 1111111221 1 122233467899999987655 2334578899999999999999999999
Q ss_pred CcEEEEEecCCC-----ceeEEEe------ccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEec-----
Q 008011 463 QEIHLWSIESDP-----KLVSRYK------GHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALA----- 526 (581)
Q Consensus 463 ~~i~iwd~~~~~-----~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~----- 526 (581)
|.|.-|...... .....++ +.........+..++|++..+.+-+.|..|++++.++|+++..+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 999999987411 1111111 111111222333448999999999999999999999986654432
Q ss_pred ---------------------------cCcC-CEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 527 ---------------------------GHSG-SVNCVSWNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 527 ---------------------------~h~~-~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.|.. .-+.+.|...+ ++|+-++-=| |++.++.++...
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeecCeEE
Confidence 1221 23456788777 6777776544 788888776654
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=0.00038 Score=72.67 Aligned_cols=268 Identities=10% Similarity=0.073 Sum_probs=154.6
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCC------CeE--EEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK------PVF--TVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~------~V~--~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 355 (581)
+..++.++.++.+.-.|..++... ........ .+. .+... ++..++.++.++.|.-+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVL---WRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhh---ceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 345666777888888888776322 22211111 010 11111 2267888889999999999999998877
Q ss_pred ecCCCe-----EE-EEEEecCCCeEEEEe---------CCCcEEEEeCCCCeeEeeccCc-c------------------
Q 008011 356 EKTGVG-----LI-SCGWFLDGGGIFAGM---------TDKSICLWDLDGRELESWKGQK-T------------------ 401 (581)
Q Consensus 356 ~~~~~~-----v~-~~~~~~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~-~------------------ 401 (581)
...... +. ...+ .+..++.++ .++.+..+|..+++..-..... .
T Consensus 137 ~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 654321 11 1112 234555654 3678899999876653322111 0
Q ss_pred -ccE-EEEEEeeCCCEEEEEEcCC------------------eEEEEECCCCeeeeEecCC--ce------EEEEEC---
Q 008011 402 -LRI-SDMAITDDGKRIISICREA------------------AILLLDREANFERWIEEEE--VI------TSFSLS--- 450 (581)
Q Consensus 402 -~~v-~~i~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~--~i------~~~~~s--- 450 (581)
..+ ...++.+.+..++.++.++ .|.-+|..+++..+..... .. ....+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 001 1234555567777777665 7999999999855542211 00 000111
Q ss_pred -CCCC---EEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE------------------eCC
Q 008011 451 -KDNK---YLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG------------------SED 508 (581)
Q Consensus 451 -p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg------------------s~d 508 (581)
-++. .+++++.+|.+...|..++ +.+-........ ...++ ..++.+ ..+
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~~~------~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVEQP------MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeeccc------cccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence 1333 5778888999999999998 554443321000 01122 222222 246
Q ss_pred CcEEEEeCCCCceEEEeccCc--------CCE--EEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 509 SQVYIWHRYTGELVLALAGHS--------GSV--NCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 509 g~I~iwd~~~~~~~~~l~~h~--------~~v--~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
|.+.-.|..+|+.+-+..... .+. ..+.. .+ .+|+.++.||.|+.+|.++++...+..
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCceeeEEE
Confidence 788899999998876655321 111 11222 33 478888899999999999999886654
No 331
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.40 E-value=4.5e-07 Score=51.61 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhc
Q 008011 64 SEFIKIITRALYSLGYDKSGALLEEES 90 (581)
Q Consensus 64 ~e~~~lI~q~L~e~G~~~s~~~l~~Es 90 (581)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.36 E-value=0.00094 Score=63.73 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=142.0
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcccCCeeeEEEeecC-CCC----CeEEEEeCCCCCeEEEeeC--CC
Q 008011 277 FLQFSHDGKYLASSS----------KDQSAIIWEVKEDGQVSLKHRLSG-HRK----PVFTVSWSPNDHQLLTCGQ--EE 339 (581)
Q Consensus 277 ~l~~s~~g~~lasgs----------~dg~i~iwd~~~~~~~~~~~~~~~-h~~----~V~~l~~sp~~~~l~s~~~--dg 339 (581)
.+..|||++.+++++ ..-.|.+||..+-.....+ .+.. |.. ....++++.|+++++.... ..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 356799999887653 2345899999764222111 2222 111 2344678889998887644 35
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCC-CCeeEee----c-cCccccEEEEEEeeC
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLD-GRELESW----K-GQKTLRISDMAITDD 412 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~-~~~~~~~----~-~~~~~~v~~i~~~~~ 412 (581)
.|.|-|+..++.+..+.... + ....| ....|.+-|.||.+....++ .++.... . ......+..-++...
T Consensus 119 SVtVVDl~~~kvv~ei~~PG--C--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG--C--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS--E--EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeecCCC--E--EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 79999999999988887654 1 11223 23568889999999988885 3332211 1 111112233445556
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeeeEe--------------cCCceEEEEECCCCCEEEEEeeCC----------cEEEE
Q 008011 413 GKRIISICREAAILLLDREANFERWIE--------------EEEVITSFSLSKDNKYLLVNLINQ----------EIHLW 468 (581)
Q Consensus 413 ~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~d~----------~i~iw 468 (581)
+..++-.+.+|.|+-.|+......+.. ..+...-+++++..+.|++....+ .|.+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 667777889999999998876622221 112345578887666666643321 48888
Q ss_pred EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEE-eCCCcEEEEeCCCCceEEEecc
Q 008011 469 SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASG-SEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sg-s~dg~I~iwd~~~~~~~~~l~~ 527 (581)
|+.+. +.+.++.... ....+... ..+..+|++. ..++.+.+||..+|+.+.++..
T Consensus 275 D~~t~-krv~Ri~l~~-~~~Si~Vs--qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTH-KRVARIPLEH-PIDSIAVS--QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTT-EEEEEEEEEE-EESEEEEE--SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCC-eEEEEEeCCC-ccceEEEc--cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88887 6666666422 22233332 2233466554 4689999999999999988874
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=0.00027 Score=71.05 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=87.4
Q ss_pred eEEEEEEec-CCCeEEEE----eCCCc----EEEEeCCCCeeE---eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEE
Q 008011 361 GLISCGWFL-DGGGIFAG----MTDKS----ICLWDLDGRELE---SWKGQKTLRISDMAITDDGKRIISICREAAILLL 428 (581)
Q Consensus 361 ~v~~~~~~~-~~~~l~sg----~~dg~----i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 428 (581)
...++.|+. +...+.+. +.+|. -++|++...++. .........+.+++++|+...++.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345666765 44445543 23443 345666443332 2222334589999999999999999999999999
Q ss_pred ECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE
Q 008011 429 DREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR 479 (581)
Q Consensus 429 d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 479 (581)
|...+........-.++.++|+|+|..+++|+..|.+.+||+.-..-....
T Consensus 287 D~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 287 DTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred EcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 999888666677778899999999999999999999999999775333333
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00012 Score=74.63 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=89.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 271 HSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 271 h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
|...|.--+++..+++++.|+.-|.+++|+-..+. .......+-.+.+..+..+++..++|.|+..|.|.|+-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 44455555667788999999999999999976542 2222333345566777888999899999999999999887642
Q ss_pred E---EE--EE-ecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 008011 351 C---LH--VY-EKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG 390 (581)
Q Consensus 351 ~---~~--~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 390 (581)
. .. .. +.|...|++++|++|+..+++|...|.|..-.++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 11 11 23678999999999999999999999999988876
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.2e-05 Score=80.82 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=127.7
Q ss_pred CeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE
Q 008011 360 VGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI 438 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~ 438 (581)
..+.|++++ ++.|+.|+.+|.|++++..+.. .....+.. . .-+|.++++++.||+|.+..+-+.. ....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~-~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSS-S------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccccc-c------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 345566664 6789999999999999987654 22222221 1 5689999999999999999988877 5557
Q ss_pred ecCCceEEEEECCC-----CCEEEEEeeCCcEEEEEecCCCceeE-EEeccccceeEEEeeeCCCCCcEEEEEeCCCcEE
Q 008011 439 EEEEVITSFSLSKD-----NKYLLVNLINQEIHLWSIESDPKLVS-RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVY 512 (581)
Q Consensus 439 ~~~~~i~~~~~sp~-----~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~ 512 (581)
....++.+++++|+ .+.+++|+..| +.++.-.--..... .+....+.+.. +.+ .|++||-++.+| |+
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~--i~W---~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS--IKW---RGNLIAWANDDG-VK 182 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEE--EEe---cCcEEEEecCCC-cE
Confidence 88899999999997 57889999888 77776432111111 23333344322 222 678999988887 89
Q ss_pred EEeCCCCceEEEeccCcCCE------EEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 513 IWHRYTGELVLALAGHSGSV------NCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 513 iwd~~~~~~~~~l~~h~~~v------~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
|||+.+++.+..++.....+ ..+.|.++. .|+.| +..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence 99999998888776544333 467898876 34443 445789988873
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.28 E-value=4.7e-07 Score=90.26 Aligned_cols=242 Identities=11% Similarity=0.154 Sum_probs=149.7
Q ss_pred CCeEEEEeCCC--CCeEEEeeCCCcEEEEECCCCcE--EEEEecCCCeEEEEEEec-CCCeEEEEe----CCCcEEEEeC
Q 008011 318 KPVFTVSWSPN--DHQLLTCGQEEAIRRWDVNSGEC--LHVYEKTGVGLISCGWFL-DGGGIFAGM----TDKSICLWDL 388 (581)
Q Consensus 318 ~~V~~l~~sp~--~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~sg~----~dg~i~iwd~ 388 (581)
..+.|+++.-+ ...+++|..+|.|.+-.++...- ......+....++++|.+ |.+.|++|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34667776553 34788888899999887765432 233446677899999998 566677664 3568999999
Q ss_pred CCCe--e---EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeee-eEecCCceEEEEECC-CCCEEEEEee
Q 008011 389 DGRE--L---ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFER-WIEEEEVITSFSLSK-DNKYLLVNLI 461 (581)
Q Consensus 389 ~~~~--~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~i~~~~~sp-~~~~l~~~~~ 461 (581)
.++- . ..+.........+++|..+.+.+.+|.....+.++|++..... ..-....+..+.++| .++|++...
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 7651 1 1111112235668899989999999999999999999966522 222333577888889 777777665
Q ss_pred CCcEEEEE-ecCCCceeEEEecccc----ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCC--------ceE---EE-
Q 008011 462 NQEIHLWS-IESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTG--------ELV---LA- 524 (581)
Q Consensus 462 d~~i~iwd-~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~--------~~~---~~- 524 (581)
|+.|.+|| .+.-..++..+...+. ..+.+..|... .|...+..-..++|+.+|+..- ... ..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~ 294 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESK 294 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEecccccCCcccccccceeeeccc
Confidence 99999999 4433233332222222 24445555533 4444444445679999986421 111 11
Q ss_pred --eccCc--CCEEEEEEcCCCC-cEEEEEECCCcEEEEcCCC
Q 008011 525 --LAGHS--GSVNCVSWNPANL-HMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 525 --l~~h~--~~v~~l~~~p~~~-~~l~s~s~Dg~I~iW~~~~ 561 (581)
++... +.|.+..||+..+ ...+++-..-.+.-+++..
T Consensus 295 ~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 295 YPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 22222 5688888887652 3445555555555555543
No 337
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.1e-05 Score=75.68 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCc-cCC----HHHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHH
Q 008011 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP-MHS----SVVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLI 136 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~-~~~----~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~i 136 (581)
.+.-+.|+|.-||--+||..+|..|.++|.+. +-+ ..+..+++++++|+...++.-...-...-......+.|.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 57789999999999999999999999999875 211 2577788999999988888766533222223344578999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccccccc-ChhhHHHhhhccccCC
Q 008011 137 LEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELASCIISPS 182 (581)
Q Consensus 137 ~~q~~lell~~~~~~~a~~~l~~~l~pl~~-~~~~~~~l~~~l~~~~ 182 (581)
+.|+|.||++.+++.+|+.+.++.+.|... ....+.....++.++.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~ 240 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPK 240 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcc
Confidence 999999999999999999999999988764 4556666666666653
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=2.2e-05 Score=80.76 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=120.7
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeec
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK 397 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 397 (581)
..++|++++ +++|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|..+-+.......
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677775 67999999999999998753 33 333333322 558999999999999999998766555544
Q ss_pred cCccccEEEEEEeeC-----CCEEEEEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 398 GQKTLRISDMAITDD-----GKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 398 ~~~~~~v~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
..+. ++.+++++|+ .+.+++|+..| +.++..+-.. .......++|.++.|. |++++-+. |-.|++|
T Consensus 110 df~r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vy 184 (846)
T KOG2066|consen 110 DFKR-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVY 184 (846)
T ss_pred ecCC-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEE
Confidence 4443 8999999998 56899999888 7776644222 3355678899999994 66777665 6668999
Q ss_pred EecCCCceeEEEecccc----ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 469 SIESDPKLVSRYKGHKR----ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 469 d~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
|+.+. +.+..+..... ..+... .+|.++.+ ++. |..-+|+|..++
T Consensus 185 d~~~~-~~l~~i~~p~~~~R~e~fpph-l~W~~~~~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTR-QRLTNIPPPSQSVRPELFPPH-LHWQDEDR-LVI-GWGDSVKICSIK 233 (846)
T ss_pred ecccc-ceeeccCCCCCCCCcccCCCc-eEecCCCe-EEE-ecCCeEEEEEEe
Confidence 99887 33333332221 111111 22344433 333 344568888776
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=4.2e-07 Score=90.60 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=130.7
Q ss_pred cCcEEEEEEcCCC--CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC-CCCeEEEee----CCCcEEEE
Q 008011 272 SDEVWFLQFSHDG--KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP-NDHQLLTCG----QEEAIRRW 344 (581)
Q Consensus 272 ~~~V~~l~~s~~g--~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~l~s~~----~dg~i~vw 344 (581)
...+.|++++.+. ..++.|..+|.|.+-.+.... ..-.....+|..+.++++|++ |.+.||.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-cccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456677766543 478899999999998876321 122344567888999999999 556677663 25679999
Q ss_pred ECCCC--cE--EEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEee-CCCEEEE
Q 008011 345 DVNSG--EC--LHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITD-DGKRIIS 418 (581)
Q Consensus 345 d~~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~ 418 (581)
|+.++ .+ ...|.. ......+++|..+.+.+++|.....+.++|++........ ..+..+..+.+.| .++++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhhhhcccceecCCCCCceec
Confidence 99876 11 112222 3345568899989999999999999999999743221111 1122566778888 6666666
Q ss_pred EEcCCeEEEEEC-CCCe---eeeEe----cCCceEEEEECCCCC-EEEEEee-CCcEEEEEecC
Q 008011 419 ICREAAILLLDR-EANF---ERWIE----EEEVITSFSLSKDNK-YLLVNLI-NQEIHLWSIES 472 (581)
Q Consensus 419 ~~~dg~i~i~d~-~~~~---~~~~~----~~~~i~~~~~sp~~~-~l~~~~~-d~~i~iwd~~~ 472 (581)
-. ||.|.+||. .+-. ..... ....+..++|.|... .+++.+. .++|++||+..
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 54 999999994 3222 11111 223589999999543 3444443 56899999864
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=3.9e-05 Score=76.91 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=82.9
Q ss_pred cEEEEEEcCC-CCEEEEE----ECCCe----EEEEEcccCCeeeEE-EeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 274 EVWFLQFSHD-GKYLASS----SKDQS----AIIWEVKEDGQVSLK-HRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 274 ~V~~l~~s~~-g~~lasg----s~dg~----i~iwd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...++.||.. ...+.|. +.+|. -.+|++..+ +++.. .+.-.....|.|++++|+...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3456777763 3344432 33443 356666543 22222 222357778999999999999999999999999
Q ss_pred EECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 008011 344 WDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE 392 (581)
Q Consensus 344 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 392 (581)
||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 998776433 33445667899999999999999999999999986443
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.004 Score=62.76 Aligned_cols=258 Identities=11% Similarity=0.083 Sum_probs=166.2
Q ss_pred cEEEEEEcCCCCEEEEEE-CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCe-EEEeeCCCcEEEEECCCCcE
Q 008011 274 EVWFLQFSHDGKYLASSS-KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQ-LLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-l~s~~~dg~i~vwd~~~~~~ 351 (581)
....+...+++..+.... ....+..-+.. ...... ....-...-..++.++.+.. .++...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677778885433332 22245555444 221111 11111133456788888874 44445568999999888877
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeC---CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE-cCCeEEE
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMT---DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC-REAAILL 427 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i 427 (581)
........ ....++++++++.++++.. ++++.+.|..+..+.........+ ..++++|+|+.++... .++.|.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 77665444 5668899999988888766 688999998887776664333323 8999999999776665 7889999
Q ss_pred EECCCCeeee------EecCCceEEEEECCCCCEEEEEeeC---CcEEEEEecCCCceeEE-EeccccceeEEEeeeCCC
Q 008011 428 LDREANFERW------IEEEEVITSFSLSKDNKYLLVNLIN---QEIHLWSIESDPKLVSR-YKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 428 ~d~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 497 (581)
+|........ .........+.++|++.++.+.... +.+...|..+. ..... +...... .. .....|
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~~--~~-~v~~~p 262 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSGA--PR-GVAVDP 262 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccCC--CC-ceeECC
Confidence 9977766442 3344556789999999987776654 48888888775 33222 2222211 11 122278
Q ss_pred CCcEEEEEeC-CCcEEEEeCCCCceEEEeccCc---CCEEEEEEcCC
Q 008011 498 EQAFIASGSE-DSQVYIWHRYTGELVLALAGHS---GSVNCVSWNPA 540 (581)
Q Consensus 498 ~~~~l~sgs~-dg~I~iwd~~~~~~~~~l~~h~---~~v~~l~~~p~ 540 (581)
+|.++.+... .+.+.+-|..+........... ..+..+++.+.
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 9998888754 4899999988887776655433 23555555543
No 342
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.16 E-value=3.1e-06 Score=52.06 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCc
Q 008011 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIP 93 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~ 93 (581)
.+.++.++|+|||...||..|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36799999999999999999999999999875
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.15 E-value=0.00044 Score=70.16 Aligned_cols=224 Identities=13% Similarity=0.131 Sum_probs=112.6
Q ss_pred eeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
..+....-....+.++|+|++++.+ .||.-.|+..... .... .+.-....|.+.+ .+|+-...++|.|+.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEE
Confidence 3344455567899999999999885 4777788874322 1111 1234567898844 577777788999963
Q ss_pred CCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008011 346 VNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 425 (581)
--+.+....+... ..+..+.. |..|...+.+ .|.+||..++.+....... +|..+.|++++.+++..+.+ .+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred cCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eE
Confidence 2222222223222 12333322 7676666554 8999999988877766654 48999999999999988755 66
Q ss_pred EEEECCCC------------eeeeEec-CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEe
Q 008011 426 LLLDREAN------------FERWIEE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRS 492 (581)
Q Consensus 426 ~i~d~~~~------------~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 492 (581)
++++.+.. ....... ...|.+.+|..+ .++..+.. .++. +-++ ....+..-..+.+.+..
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G--e~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG--ETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT--EEEEEEE-SS--EEEEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC--CcceEEEcCCceEEEEE
Confidence 66665544 3333333 788999999766 44444433 5555 3332 11122222233333332
Q ss_pred eeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 493 CFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 493 ~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
.+..+.++....|+.|..+.+.
T Consensus 241 ---~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 ---LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ---ETTTTEEEEE-TT--EEEEE--
T ss_pred ---EccCCEEEEEECCCCEEEEEEC
Confidence 2344566666667666666554
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0019 Score=67.49 Aligned_cols=238 Identities=15% Similarity=0.158 Sum_probs=133.7
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--CCCeEEEee---------CCCcEEEEECCCCcEEE
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--NDHQLLTCG---------QEEAIRRWDVNSGECLH 353 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~l~s~~---------~dg~i~vwd~~~~~~~~ 353 (581)
..++.++.++.|.-+|.++++.. -......+...-..+.-+| .+..++.++ .+|.+..+|..+|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQV-WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEe-eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57777888999999999877432 1111222110001111122 124455543 46789999999999888
Q ss_pred EEecCCC--------------------eE-EEEEEecCCCeEEEEeCCC------------------cEEEEeCCCCeeE
Q 008011 354 VYEKTGV--------------------GL-ISCGWFLDGGGIFAGMTDK------------------SICLWDLDGRELE 394 (581)
Q Consensus 354 ~~~~~~~--------------------~v-~~~~~~~~~~~l~sg~~dg------------------~i~iwd~~~~~~~ 394 (581)
.+..... .+ ...++.+.+..++.++.++ .|.-+|..+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 7754211 01 1233444567788887665 6888899877765
Q ss_pred eeccCccccE------EEEEEe----eCCC---EEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEe-
Q 008011 395 SWKGQKTLRI------SDMAIT----DDGK---RIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNL- 460 (581)
Q Consensus 395 ~~~~~~~~~v------~~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~- 460 (581)
-......... ....+. -++. .+++++.+|.++.+|.++++..+..... ...++.+| ..++++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~~~ 346 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLGAF 346 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEccc
Confidence 3322111011 000111 1333 5778888999999999999854433211 12233444 3333321
Q ss_pred -----------------eCCcEEEEEecCCCceeEEEeccccc-e----eEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC
Q 008011 461 -----------------INQEIHLWSIESDPKLVSRYKGHKRA-R----FVIRSCFGGFEQAFIASGSEDSQVYIWHRYT 518 (581)
Q Consensus 461 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~ 518 (581)
.+|.+.-.|+.++ +.+-........ . ...........+.+|+.++.||.|+.+|..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 3567888888877 444433322000 0 0000000012457888999999999999999
Q ss_pred CceEEEecc
Q 008011 519 GELVLALAG 527 (581)
Q Consensus 519 ~~~~~~l~~ 527 (581)
|+.+.+++-
T Consensus 426 G~~lW~~~~ 434 (488)
T cd00216 426 GKELWKFRT 434 (488)
T ss_pred CceeeEEEC
Confidence 999887764
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00044 Score=69.88 Aligned_cols=195 Identities=18% Similarity=0.140 Sum_probs=121.0
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe---CC-CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCE
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM---TD-KSICLWDLDGRELESWKGQKTLRISDMAITDDGKR 415 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 415 (581)
.+.+-|.. |.....+......+..-.|+|++..++..+ .. ..++++|++++......... ..-..-+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCE
Confidence 34444544 555666666667788889999998876543 22 35899999876654444322 24456689999998
Q ss_pred EEEEE-cCC--eEEEEECCCCee-eeEecCCceEEEEECCCCCEEEEEee-CC--cEEEEEecCCCceeEEEecccccee
Q 008011 416 IISIC-REA--AILLLDREANFE-RWIEEEEVITSFSLSKDNKYLLVNLI-NQ--EIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 416 l~~~~-~dg--~i~i~d~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
++.+. .|| .|+++|+.+... ++....+.-+.-.|+|||++++..+. .| .|.+++.... ....+........
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~--~~~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS--QVTRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC--ceeEeeccCCCCc
Confidence 87654 455 577888888773 33333344446789999999888765 34 4666666654 3344433333211
Q ss_pred EEEeeeCCCCCcEEEEEeC-CCc--EEEEeCCCCceEEEeccCcCCEEEEEEcCCCC
Q 008011 489 VIRSCFGGFEQAFIASGSE-DSQ--VYIWHRYTGELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~-dg~--I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~ 542 (581)
.-.++|+|++|+..+. +|. |.+.|+.++.....+. +......-+|.|++.
T Consensus 330 ---~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 330 ---NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred ---CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 3345899999887764 344 7777776665433333 233334556777763
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00065 Score=70.05 Aligned_cols=216 Identities=10% Similarity=0.047 Sum_probs=129.1
Q ss_pred EcCCCCEEEEE-ECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC----cEEEEECCCCcEEEE
Q 008011 280 FSHDGKYLASS-SKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE----AIRRWDVNSGECLHV 354 (581)
Q Consensus 280 ~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg----~i~vwd~~~~~~~~~ 354 (581)
++|||+.+... -..+.+.+.|.++. +....+.-- +....+.++|+|+++++++.+. ++..-+..+...+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc---eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 56677755433 34466777777653 233332221 2346778999999998886432 233333322222222
Q ss_pred EecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC-----CeeEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEE
Q 008011 355 YEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-----RELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLL 428 (581)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~ 428 (581)
+.... + -.+.++|++... .++.|.+.|..+ ..+....... .....+.++|||+++++++. ++++.++
T Consensus 276 fni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 276 FNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred EchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 21110 0 023457777665 367899999987 3444433333 37889999999999887765 8899999
Q ss_pred ECCCCee-------------eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC---------CceeEEEeccccc
Q 008011 429 DREANFE-------------RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---------PKLVSRYKGHKRA 486 (581)
Q Consensus 429 d~~~~~~-------------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~ 486 (581)
|+.+... ............+|+++|+...+-.-|..|..|++... ...+.++..|-+.
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 9987541 11223344567789999988888888999999999761 1344444444333
Q ss_pred eeEEE--eeeCCCCCcEEEEEe
Q 008011 487 RFVIR--SCFGGFEQAFIASGS 506 (581)
Q Consensus 487 ~~~i~--~~~~~~~~~~l~sgs 506 (581)
..... .-.-.++|++|++..
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEcc
Confidence 22111 111256788887765
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.13 E-value=0.0062 Score=62.52 Aligned_cols=241 Identities=15% Similarity=0.177 Sum_probs=137.2
Q ss_pred eEEEEeCCCCCeEEEe-eCCC----cEEEEECCCCcEEEEE-ecCCCeEEEEEEecCCCeEEEEeCCC-----------c
Q 008011 320 VFTVSWSPNDHQLLTC-GQEE----AIRRWDVNSGECLHVY-EKTGVGLISCGWFLDGGGIFAGMTDK-----------S 382 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg-----------~ 382 (581)
+....++|+++++|.+ +..| .++++|+.+|+.+... ... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999998865 3334 5999999999776532 222 122399999988887765433 3
Q ss_pred EEEEeCCCCee---EeeccCcccc-EEEEEEeeCCCEEEEEEcC----CeEEEEECCCC-----e-eeeEecCCceE-EE
Q 008011 383 ICLWDLDGREL---ESWKGQKTLR-ISDMAITDDGKRIISICRE----AAILLLDREAN-----F-ERWIEEEEVIT-SF 447 (581)
Q Consensus 383 i~iwd~~~~~~---~~~~~~~~~~-v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~-----~-~~~~~~~~~i~-~~ 447 (581)
|+.|.+.+... ..+....... ...+..++|+++++..... ..+++.|.... . .........+. .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888865432 2222222223 6788899999988765432 45888898875 2 33333333343 34
Q ss_pred EECCCCCEEEEEee---CCcEEEEEecCCCc--eeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC--cEEEEeCCCCc
Q 008011 448 SLSKDNKYLLVNLI---NQEIHLWSIESDPK--LVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS--QVYIWHRYTGE 520 (581)
Q Consensus 448 ~~sp~~~~l~~~~~---d~~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg--~I~iwd~~~~~ 520 (581)
... .+.+++.... ++.|.-.++..... ....+..+........+.. ..+.+++....++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 3334333322 34666677766532 2224444444322222221 2345566666666 78899988344
Q ss_pred eEEEecc-CcCCEEEEEEcCCCCcEEEEEEC---CCcEEEEcCCCcCcc
Q 008011 521 LVLALAG-HSGSVNCVSWNPANLHMLASASD---DRTIRIWGLDQINMK 565 (581)
Q Consensus 521 ~~~~l~~-h~~~v~~l~~~p~~~~~l~s~s~---Dg~I~iW~~~~~~~~ 565 (581)
....+.. -.+.|..+...+++..+.++.+. -+++.-||+.+++..
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4443333 34557777777777566666554 367888999888764
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.01 Score=56.91 Aligned_cols=266 Identities=11% Similarity=0.130 Sum_probs=152.3
Q ss_pred CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC----------CCcEEEEECCCCcEEEEEecCCC-eE
Q 008011 294 QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ----------EEAIRRWDVNSGECLHVYEKTGV-GL 362 (581)
Q Consensus 294 g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~v 362 (581)
+.+.|.|.++++ ....+.. +-.-.+..+|+++.++++.. .-.|.+||..+-.....+.-... ..
T Consensus 17 ~rv~viD~d~~k---~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGK---LLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTE---EEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCc---EEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 468888887653 2222221 12334667999999887542 23599999999887776654432 11
Q ss_pred ------EEEEEecCCCeEEEEe--CCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC-C
Q 008011 363 ------ISCGWFLDGGGIFAGM--TDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA-N 433 (581)
Q Consensus 363 ------~~~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~ 433 (581)
.....+.|++++++.. --..|.|.|+..++........ .+..+--+ ..+.+.+.|.||.+..+.+.. +
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCC
Confidence 2345677888877654 3457888888887776544433 22222222 235688999999998888873 3
Q ss_pred eeeeE------ecCC-ceEEEEECCCCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc------c---ceeEEEeeeCC
Q 008011 434 FERWI------EEEE-VITSFSLSKDNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK------R---ARFVIRSCFGG 496 (581)
Q Consensus 434 ~~~~~------~~~~-~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~------~---~~~~i~~~~~~ 496 (581)
+.... .... .+..-+++..+..++-.+.+|.|+-.|+.... +....+.... + ..+.+ ..+..
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~-~A~~~ 247 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL-IAYHA 247 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS--EEEET
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee-eeecc
Confidence 32111 1111 12233444455555556779999998887753 1222222110 0 00111 11112
Q ss_pred CCCcEEEEEe--C-----CC--cEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEE-ECCCcEEEEcCCCcCccc
Q 008011 497 FEQAFIASGS--E-----DS--QVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASA-SDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 497 ~~~~~l~sgs--~-----dg--~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~-s~Dg~I~iW~~~~~~~~~ 566 (581)
+.+++.+.-. . |+ .|.++|+.+++.+..+.. ..++.+|..+.+..-+|++. ..++.+.+||..++++.+
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2333332211 1 22 588889999999998874 34688999998774466554 468999999999999876
Q ss_pred ccC
Q 008011 567 RDQ 569 (581)
Q Consensus 567 ~~~ 569 (581)
...
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 543
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0035 Score=60.34 Aligned_cols=235 Identities=14% Similarity=0.156 Sum_probs=137.3
Q ss_pred CCCeEEEeeCCCcEEEEECCC-CcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEee----------
Q 008011 328 NDHQLLTCGQEEAIRRWDVNS-GECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESW---------- 396 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~---------- 396 (581)
.++.|+.|+.+| +.++++.. ......... ..|..+...++-+.+++-+ |+.++++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899998888 89999833 333333222 2389999998877776664 59999999864222211
Q ss_pred ----ccCccccEEEEE--EeeCCCEEEEEEcCCeEEEEECCCC------eeeeEecCCceEEEEECCCCCEEEEEeeCCc
Q 008011 397 ----KGQKTLRISDMA--ITDDGKRIISICREAAILLLDREAN------FERWIEEEEVITSFSLSKDNKYLLVNLINQE 464 (581)
Q Consensus 397 ----~~~~~~~v~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~ 464 (581)
.......+...+ -...+...+++.....|.+|..... ..+.+.....+.+++|. ++.++++. ...
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-SKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-CCc
Confidence 111122344444 2234444455555568888877653 23445667889999998 56677776 555
Q ss_pred EEEEEecCCCceeEEEecccc---------ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEE--EeccCcCCEE
Q 008011 465 IHLWSIESDPKLVSRYKGHKR---------ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVL--ALAGHSGSVN 533 (581)
Q Consensus 465 i~iwd~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~v~ 533 (581)
..+.|+.++ .....+..... ....+.... -+++.+|++.. . +-+|=-..|+... .+. -...+.
T Consensus 159 f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~--~-~g~fv~~~G~~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 159 FYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYD--N-IGVFVNKNGEPSRKSTIQ-WSSAPQ 232 (275)
T ss_pred eEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEec--c-eEEEEcCCCCcCcccEEE-cCCchh
Confidence 888898864 33222211110 011121212 23456666532 2 3333223454433 222 234556
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccCCCceEEecCC
Q 008011 534 CVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQSNGIVHHCNG 579 (581)
Q Consensus 534 ~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~~~~~~G 579 (581)
++++.. | +|+..+. +.|.||++.++++.+.....++...+.|
T Consensus 233 ~~~~~~--p-yli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~l~~~ 274 (275)
T PF00780_consen 233 SVAYSS--P-YLIAFSS-NSIEVRSLETGELVQTIPLPNIRLLCSG 274 (275)
T ss_pred EEEEEC--C-EEEEECC-CEEEEEECcCCcEEEEEECCCEEEEecC
Confidence 666643 3 5555555 4599999999999998888877776665
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00018 Score=74.46 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=146.2
Q ss_pred eccCCCCCceeeccCCCCcccccccceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCC
Q 008011 239 FHNTSDSDFSLYSDHQCGRNRIPSQTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK 318 (581)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~ 318 (581)
|++...+.+.+|-+..-+... -+..- .+++++|+|..-.||.|-.-|.+.+|...+. +.......|..
T Consensus 35 fS~er~GSVtIfadtGEPqr~------Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a 102 (1416)
T KOG3617|consen 35 FSPERGGSVTIFADTGEPQRD------VTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPA 102 (1416)
T ss_pred ecCCCCceEEEEecCCCCCcc------cccce---ehhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCC
Confidence 455566677777654321111 11111 2456999999889999999999999998754 33344567999
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEE------------------EEEec---------------CCCeEE-E
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL------------------HVYEK---------------TGVGLI-S 364 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~------------------~~~~~---------------~~~~v~-~ 364 (581)
+|..+.||++|..++++..-|.|.+|....-..+ ..+.. ....+- -
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~ 182 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEP 182 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhccc
Confidence 9999999999999999999999999986521100 00000 000000 0
Q ss_pred EEE-------------ecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEE---
Q 008011 365 CGW-------------FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLL--- 428 (581)
Q Consensus 365 ~~~-------------~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~--- 428 (581)
.-| .|+|..++.++.+|+|+..|-.+........... ..+-|.+....+++...+-.+.++
T Consensus 183 fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~ 259 (1416)
T KOG3617|consen 183 FNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVL 259 (1416)
T ss_pred ccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEec
Confidence 001 2456778888889988888865543322221110 011111211111111111111111
Q ss_pred ---------------------------ECCC----CeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC----
Q 008011 429 ---------------------------DREA----NFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD---- 473 (581)
Q Consensus 429 ---------------------------d~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~---- 473 (581)
.... ....-...+..++|++++..+..+..|...|.+.+|--...
T Consensus 260 ~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g 339 (1416)
T KOG3617|consen 260 AKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQG 339 (1416)
T ss_pred CCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccC
Confidence 1000 00111234567999999999999999999999999964321
Q ss_pred --CceeEEEeccccceeEEEeeeCCCCCcEEEEEeC
Q 008011 474 --PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSE 507 (581)
Q Consensus 474 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~ 507 (581)
..-...+.+.......|+.+-|+|-.+.++.-+.
T Consensus 340 ~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 340 DPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred CCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 1223445555555555777777776555554443
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.0024 Score=64.92 Aligned_cols=227 Identities=14% Similarity=0.103 Sum_probs=110.1
Q ss_pred ecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEE-eCCCC
Q 008011 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLW-DLDGR 391 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw-d~~~~ 391 (581)
+.........+.++|+|++++++ .||.-.|+.....+... + +.....+|.+ .+.+++-...++|.++ +++..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c----CceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 33445557899999999999884 56777788744333322 2 2344678888 4567777778899996 44322
Q ss_pred eeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008011 392 ELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 392 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
....+.... .+..+-. |..|...+. +.|.+||+.++.....-.-..|..+.|++++.+++..+ +..+.+++..
T Consensus 101 ~~k~i~~~~--~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t-~~~i~il~~~ 173 (443)
T PF04053_consen 101 VVKSIKLPF--SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT-KDSIYILKYN 173 (443)
T ss_dssp TT-----SS---EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE--S-SEEEEEE-
T ss_pred cceEEcCCc--ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe-CCeEEEEEec
Confidence 212222211 2344433 776666654 48999999998833333333489999999999999987 5577777654
Q ss_pred CC----------CceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCC
Q 008011 472 SD----------PKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPAN 541 (581)
Q Consensus 472 ~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~ 541 (581)
.. ............. +.+..|..+ -++++... .|+.+ -.|+. ..+..-..++.=+.+.|..
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~---IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISER---IKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S-----SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-SS--EEEEEETTT
T ss_pred chhcccccccCchhceEEEEEecce---eEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEcCCceEEEEEEccC
Confidence 31 0022222211111 112222222 22222222 44442 22221 2222224566667777766
Q ss_pred CcEEEEEECCCcEEEEcCCCcC
Q 008011 542 LHMLASASDDRTIRIWGLDQIN 563 (581)
Q Consensus 542 ~~~l~s~s~Dg~I~iW~~~~~~ 563 (581)
+.+.....|+.|..+.++...
T Consensus 245 -~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 245 -NRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -TEEEEE-TT--EEEEE--HHH
T ss_pred -CEEEEEECCCCEEEEEECHHH
Confidence 578888889999888876544
No 352
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.07 E-value=7.4e-06 Score=70.28 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhccccccc-ChhhHHHhhh
Q 008011 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKVSAALNSLRSEIVPLQI-NMSRVHELAS 176 (581)
Q Consensus 98 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~i~~q~~lell~~~~~~~a~~~l~~~l~pl~~-~~~~~~~l~~ 176 (581)
....++++|++|+++.|+..++.....-......+.|.++.|+|+|+++.++..+|+...|+.+.|... ..+.+..+..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467889999999999999999876322112234688999999999999999999999999998866554 5566777777
Q ss_pred ccccCCcccc-cCCCCCCccchHHHHHHHHHHHhcCCCCCCCC-cchHHHHHHHHHH
Q 008011 177 CIISPSKSLT-LGDSGQDTEDEKSRSKFLAKLQKLLPASVVIP-EKRLEHLVEKALD 231 (581)
Q Consensus 177 ~l~~~~~~~~-~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p-~~rl~~l~~q~~~ 231 (581)
++........ ..+... --....|.++.+.+...+-....+| ...|..++.+...
T Consensus 84 lL~~~~~~~~~~s~~~~-l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~ 139 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKE-LLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLS 139 (145)
T ss_pred HHHcCCcccccchHHHH-HhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 7665543320 001111 1123567888887777654444444 4566666665543
No 353
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.06 E-value=2.5e-06 Score=60.02 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhcCCH
Q 008011 98 VVNQFMQQVMDGYWDESIITLHMIGLSDETAVKSASFLILEQKFLELLRRDKV 150 (581)
Q Consensus 98 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~i~~q~~lell~~~~~ 150 (581)
.+..++++|++|+|+.|+..+.............+.|.+++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 57889999999999999999988765444444578999999999999988754
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.018 Score=58.57 Aligned_cols=259 Identities=13% Similarity=0.193 Sum_probs=131.1
Q ss_pred EEEcCCCCEEEEEECC----------C-eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEEC
Q 008011 278 LQFSHDGKYLASSSKD----------Q-SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDV 346 (581)
Q Consensus 278 l~~s~~g~~lasgs~d----------g-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~ 346 (581)
++.+|.|..+|....+ . .|.||+... ..+ ..+.-..+.|.++.|+.+ ..|++...||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll---~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLL---SSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEe---EEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence 4555666656555433 1 488888763 222 222222278999999875 45667779999999998
Q ss_pred CCCcEEEEEe--cCCCeEEEE-----EEecCCCeEEEEeCCCcEEEEeCCCCeeE--eeccC-------cc-ccEEE-EE
Q 008011 347 NSGECLHVYE--KTGVGLISC-----GWFLDGGGIFAGMTDKSICLWDLDGRELE--SWKGQ-------KT-LRISD-MA 408 (581)
Q Consensus 347 ~~~~~~~~~~--~~~~~v~~~-----~~~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~-------~~-~~v~~-i~ 408 (581)
. |+....+. .....|..+ .+..+| ++.-..++.+.+.+--..... ..... +. ..... ..
T Consensus 109 ~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 109 F-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred C-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceE
Confidence 6 33311111 111122222 222233 333344555555433221111 00000 00 00111 23
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008011 409 ITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
++.+....+....++.+.+.+..... .....+++..+++||++++++.-..+|.+.+.+.+-. +....+......
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~--~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~-- 260 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK--QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKS-- 260 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc--cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCC--
Confidence 44455555555666666655433221 1334568999999999999999999999988876544 334443332110
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
.| ..++-+++|..+..|. ..+..+...... +.|.-+++ .++..-.|| |||..-++.+..++
T Consensus 261 -------~p--~~~~WCG~dav~l~~~----~~l~lvg~~~~~---~~~~~~~~-~~l~~E~DG-~riit~~~~~~l~~ 321 (410)
T PF04841_consen 261 -------PP--KQMAWCGNDAVVLSWE----DELLLVGPDGDS---ISFWYDGP-VILVSEIDG-VRIITSTSHEFLQR 321 (410)
T ss_pred -------CC--cEEEEECCCcEEEEeC----CEEEEECCCCCc---eEEeccCc-eEEeccCCc-eEEEeCCceEEEEE
Confidence 11 2334444455555562 122222222222 34444442 344444455 77776666655443
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00053 Score=69.32 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=125.6
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEE---CC-CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee-CCC
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSS---KD-QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG-QEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~-~dg 339 (581)
.+.+..-...+..-+|+|+++.++..+ .. ..+.++++.++... .+..+.++. ..-+|+|||+.|+.+. .||
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~~~g~~---~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILNFNGNN---GAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeeccCCcc---CCccCCCCCCEEEEEECCCC
Confidence 344444556777788999998766542 22 46899999876543 333344444 4568999998877654 455
Q ss_pred c--EEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-C--cEEEEeCCCCeeEeeccCccccEEEEEEeeCCC
Q 008011 340 A--IRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD-K--SICLWDLDGRELESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 340 ~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 414 (581)
. |.+.|+.++...+ +....+.-..-.|+|||+.++..+.. | .|.++|.++............. ..-.|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCCC
Confidence 4 6677877776433 54444444477899999998876653 3 5777788777654444333222 2778999999
Q ss_pred EEEEEEcC-Ce--EEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeC
Q 008011 415 RIISICRE-AA--ILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 415 ~l~~~~~d-g~--i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
+++..+.. |. |.+.|+.+.. .+..........-.|.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 99888753 33 6666666655 5555555556677788888877765543
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.00087 Score=67.09 Aligned_cols=258 Identities=8% Similarity=0.060 Sum_probs=133.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCee----------------------------------------eEEEee
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQV----------------------------------------SLKHRL 313 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 313 (581)
.|+++.|+++..-|+.|...|.|.||.+..++.. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999987543211 122223
Q ss_pred cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe--c------CCCeEEEEEEec-----CC---CeEEEE
Q 008011 314 SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE--K------TGVGLISCGWFL-----DG---GGIFAG 377 (581)
Q Consensus 314 ~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~sg 377 (581)
....++|++++.| |=.+++.|..+|.+.|.|++....+..-. . ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4457889999997 45599999999999999998877776532 1 234677787763 22 358889
Q ss_pred eCCCcEEEEeCCCCeeEeeccCccccEEEEEEe--eCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCE
Q 008011 378 MTDKSICLWDLDGRELESWKGQKTLRISDMAIT--DDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKY 455 (581)
Q Consensus 378 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~ 455 (581)
+..|.+.+|.+.-.. . ....+..+... .++.. ..|..++..++....-.. ..+..+.--..-.-
T Consensus 162 Tn~G~v~~fkIlp~~----~--g~f~v~~~~~~~~~~~~i-------~~I~~i~~~~G~~a~At~-~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 162 TNSGNVLTFKILPSS----N--GRFSVQFAGATTNHDSPI-------LSIIPINADTGESALATI-SAMQGLSKGISIPG 227 (395)
T ss_dssp ETTSEEEEEEEEE-G----G--G-EEEEEEEEE--SS-----------EEEEEETTT--B-B-BH-HHHHGGGGT----E
T ss_pred eCCCCEEEEEEecCC----C--CceEEEEeeccccCCCce-------EEEEEEECCCCCcccCch-hHhhccccCCCcCc
Confidence 999999999762100 0 00011111111 11110 122233444333110000 00000000001122
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeC----CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc--
Q 008011 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG----GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-- 529 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-- 529 (581)
+++...+..++++...+.....+.+ ........+++. ...+..|++-..+|.|++|.+..-+.+..+.-+.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL 304 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS--
T ss_pred EEEEEcccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc
Confidence 4444558899999988763333333 121111222221 2356788999999999999999988887776532
Q ss_pred --CCEEEEEEcCCCCcEEEEEEC
Q 008011 530 --GSVNCVSWNPANLHMLASASD 550 (581)
Q Consensus 530 --~~v~~l~~~p~~~~~l~s~s~ 550 (581)
..+...+++++| ..++-.|.
T Consensus 305 d~~~~~~ssis~~G-di~~~~gp 326 (395)
T PF08596_consen 305 DSRRLSSSSISRNG-DIFYWTGP 326 (395)
T ss_dssp -HHHHTT-EE-TTS--EEEE-SS
T ss_pred ccccccccEECCCC-CEEEEeCc
Confidence 234556778888 45555543
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.02 E-value=0.0061 Score=56.67 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=114.6
Q ss_pred EEecCCCeEEEEEEecCCCe-EEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008011 354 VYEKTGVGLISCGWFLDGGG-IFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.+.+-...+..++|.|+.+. +++....+.|..++.++..+.............|++..++.++++.-+++.+.++++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 34455567999999998665 45566678888889876666555544445789999998887777666789999998843
Q ss_pred Ce-----e--eeE------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC--CCceeEE--Eeccc---cceeEEEe
Q 008011 433 NF-----E--RWI------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES--DPKLVSR--YKGHK---RARFVIRS 492 (581)
Q Consensus 433 ~~-----~--~~~------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~~~~~--~~~~~---~~~~~i~~ 492 (581)
.. . ... ..+..+-.++|+|.++.|+++-...-..+|.+.. ....... ..... .....+..
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 22 1 111 2345589999999988888888877777887765 1111111 11111 11111222
Q ss_pred e-eCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc---------CCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 493 C-FGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS---------GSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 493 ~-~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~---------~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
+ +....+.+++....+..|..+| .+|+.+..+.-.. ...-+|+|.++| + |...++-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-C-EEEEcCCceEEEe
Confidence 2 3345677888888888999999 6788766554222 246789999998 3 4445566655544
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.99 E-value=0.017 Score=60.64 Aligned_cols=279 Identities=12% Similarity=0.080 Sum_probs=149.6
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCC--CCe-------EEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHR--KPV-------FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHV 354 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~--~~V-------~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~ 354 (581)
+..|+.++.++.|+-.|..++..+- ........ ..+ ..+++ .+..++.++.|+.+.-.|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW-~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELW-KYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceee-EecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3456666677788888877764321 11111110 000 01122 234677788899999999999998876
Q ss_pred EecCC----CeEEEEEEecCCCeEEEEeC------CCcEEEEeCCCCeeEeeccC-c-----------------------
Q 008011 355 YEKTG----VGLISCGWFLDGGGIFAGMT------DKSICLWDLDGRELESWKGQ-K----------------------- 400 (581)
Q Consensus 355 ~~~~~----~~v~~~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~-~----------------------- 400 (581)
..... ..+++.-.. .+..++++.. +|.|..+|.++++..-.... .
T Consensus 146 ~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 65321 111111111 1335565543 68899999877664321110 0
Q ss_pred -------cccE-EEEEEeeCCCEEEEEEcC-----C-----------eEEEEECCCCeeeeE----ecC-------CceE
Q 008011 401 -------TLRI-SDMAITDDGKRIISICRE-----A-----------AILLLDREANFERWI----EEE-------EVIT 445 (581)
Q Consensus 401 -------~~~v-~~i~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~----~~~-------~~i~ 445 (581)
...+ ..+++.+....++.+..+ + +|.-.|.++++.++. .|+ ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0011 134666666666665522 2 677888888883332 221 1222
Q ss_pred EEEECCCCC---EEEEEeeCCcEEEEEecCCCceeEE--------E----ecccc-c--------------eeEEE----
Q 008011 446 SFSLSKDNK---YLLVNLINQEIHLWSIESDPKLVSR--------Y----KGHKR-A--------------RFVIR---- 491 (581)
Q Consensus 446 ~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~--------~----~~~~~-~--------------~~~i~---- 491 (581)
-+.+..+|+ .++.+..+|.+++.|..++ +++.. + ..... + ...+.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~ 383 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNG-KLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF 383 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCC-ceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence 233334665 7788999999999999887 44311 1 00000 0 00000
Q ss_pred -------eeeCCCCCcEEEEEeC---------------------------------CCcEEEEeCCCCceEEEeccCcCC
Q 008011 492 -------SCFGGFEQAFIASGSE---------------------------------DSQVYIWHRYTGELVLALAGHSGS 531 (581)
Q Consensus 492 -------~~~~~~~~~~l~sgs~---------------------------------dg~I~iwd~~~~~~~~~l~~h~~~ 531 (581)
...++|+..+++.... -|.|.-+|+.+|+..-........
T Consensus 384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~ 463 (527)
T TIGR03075 384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL 463 (527)
T ss_pred cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence 0111233333332222 245777888888877665532211
Q ss_pred EEEEEEcCCCCcEEEEEECCCcEEEEcCCCcCcccccC
Q 008011 532 VNCVSWNPANLHMLASASDDRTIRIWGLDQINMKHRDQ 569 (581)
Q Consensus 532 v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 569 (581)
..+.... .+ .+++.++.||.++.+|.++++...+..
T Consensus 464 ~~~~l~t-~g-~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 464 WGGVLAT-AG-DLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCcceEE-CC-cEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 1222111 33 477778889999999999999887654
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00054 Score=70.00 Aligned_cols=135 Identities=10% Similarity=0.095 Sum_probs=100.5
Q ss_pred CCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe-cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-
Q 008011 316 HRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL- 393 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~- 393 (581)
|...|.--+++..+++++.|+..|.+.+|+-..+.....-. +....+..+..+++..++++|+..|.|.++-+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44456666667789999999999999999977665433222 3455666677888888899999999999998754221
Q ss_pred -----EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe------eeeEecCCceEEEEEC
Q 008011 394 -----ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF------ERWIEEEEVITSFSLS 450 (581)
Q Consensus 394 -----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s 450 (581)
......|...|++++|++++..+++|...|.|....+.... .......+.|..+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11222346789999999999999999999999998887721 4555667778777765
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.96 E-value=0.0033 Score=58.46 Aligned_cols=199 Identities=14% Similarity=0.147 Sum_probs=110.3
Q ss_pred eeeccccCcEEEEEEcCCCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEE
Q 008011 266 QILEAHSDEVWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRW 344 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vw 344 (581)
..+.+-.+.+..++|.|+.+ ++++....+.|...+.+ +++.....+.+ .+..-.|++..++.++++.-.++.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 35666677899999999765 55566667777777754 33333333444 3457788888888777776668999999
Q ss_pred ECCCCc------EEEEEe-----cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC----CeeEe-----e--ccCccc
Q 008011 345 DVNSGE------CLHVYE-----KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG----RELES-----W--KGQKTL 402 (581)
Q Consensus 345 d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~----~~~~~-----~--~~~~~~ 402 (581)
++.... ....+. .+...+-.++|.+.++.|+++-......+|.++. ..... + ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 112222 2355789999999988888887776666666543 11110 0 112234
Q ss_pred cEEEEEEeeCCC-EEEEEEcCCeEEEEECCCCeeeeEecC----------CceEEEEECCCCCEEEEEeeCCcEEEE
Q 008011 403 RISDMAITDDGK-RIISICREAAILLLDREANFERWIEEE----------EVITSFSLSKDNKYLLVNLINQEIHLW 468 (581)
Q Consensus 403 ~v~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~d~~i~iw 468 (581)
.+.+++++|... .++.......|..+|............ ...-.|+|.++|+..++ +..+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 688999998755 455556677888899665543333322 24778999999865554 445544443
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.013 Score=56.32 Aligned_cols=226 Identities=16% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEE------
Q 008011 282 HDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY------ 355 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 355 (581)
..++.|+.|+.+| +.+++....... .... +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3577899999998 899998322222 1111 223399999999877777665 499999998754333210
Q ss_pred --------ecCCCeEEEEE--EecCCCeEEEEeCCCcEEEEeCCCC------eeEeeccCccccEEEEEEeeCCCEEEEE
Q 008011 356 --------EKTGVGLISCG--WFLDGGGIFAGMTDKSICLWDLDGR------ELESWKGQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 356 --------~~~~~~v~~~~--~~~~~~~l~sg~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
......+...+ -...+...++......|.+|..... ....+... ..+.+++|. ++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 01122333333 1123444444445558888877432 22222222 478889988 5567766
Q ss_pred EcCCeEEEEECCCCe-eeeEec-------------CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008011 420 CREAAILLLDREANF-ERWIEE-------------EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
.. ....+.|+.++. ...... ..++..+... ++.+|++ . +..-.+.|..+.......+.-...
T Consensus 155 ~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCc
Confidence 64 447888888665 222211 1223333333 4455554 2 334444455442111122222222
Q ss_pred ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC
Q 008011 486 ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 486 ~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 528 (581)
+ ....+ ...||++.+.+ .|.||++.++++++.+...
T Consensus 231 p---~~~~~---~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 P---QSVAY---SSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred h---hEEEE---ECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 2 11222 22477776664 4999999999998888754
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.007 Score=61.02 Aligned_cols=201 Identities=9% Similarity=0.092 Sum_probs=141.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeC---CCcEEEEECCCCc
Q 008011 275 VWFLQFSHDGK-YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQ---EEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~---dg~i~vwd~~~~~ 350 (581)
-..+++++.+. ..++...++.|.+.|.......... ..+. ....++++|+++.+..+.. ++++.+.|..+++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 44678888887 4445555688999997654322111 1222 4568999999988777765 6889999999998
Q ss_pred EEEEEecCCCeEEEEEEecCCCeEEEEe-CCCcEEEEeCCCCeeEe-e---ccCccccEEEEEEeeCCCEEEEEEcC---
Q 008011 351 CLHVYEKTGVGLISCGWFLDGGGIFAGM-TDKSICLWDLDGRELES-W---KGQKTLRISDMAITDDGKRIISICRE--- 422 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~i~~~~~~~~l~~~~~d--- 422 (581)
..........+ ..+++.|++..+++.. .++.|.+.|..+..+.. . ..........+.++++|..+.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 88886554445 8899999999777766 68899999987766653 1 01112246778999999977776554
Q ss_pred CeEEEEECCCCeeeeE--ecCC-ceEEEEECCCCCEEEEEeeC-CcEEEEEecCCCceeEEEe
Q 008011 423 AAILLLDREANFERWI--EEEE-VITSFSLSKDNKYLLVNLIN-QEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 423 g~i~i~d~~~~~~~~~--~~~~-~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~ 481 (581)
+.+...|..++..... .... ....+..+|+|+++.+.... +.+.+.|..+. .......
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~ 292 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGP 292 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeec
Confidence 5899999988773222 2222 56788999999999988554 78888888776 4444433
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.92 E-value=0.0022 Score=64.27 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=122.7
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC--------
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG-------- 390 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------- 390 (581)
.|+.+.|+++...|+++...|.|.||.+...+... ......-....+.+ + ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 48899999999999999999999999876543322 00000111111111 0 00111222333321
Q ss_pred -CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEe----------cCCceEEEEECC-----CC-
Q 008011 391 -RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE----------EEEVITSFSLSK-----DN- 453 (581)
Q Consensus 391 -~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~i~~~~~sp-----~~- 453 (581)
-..........++|++++.+.-| ++++|..+|.+.+.|++.....+.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 11223333446689999997554 8999999999999999988733332 223577777752 33
Q ss_pred --CEEEEEeeCCcEEEEEecC--CCceeEEEe----ccccceeEEEeeeCC------------------CCCcEEEEEeC
Q 008011 454 --KYLLVNLINQEIHLWSIES--DPKLVSRYK----GHKRARFVIRSCFGG------------------FEQAFIASGSE 507 (581)
Q Consensus 454 --~~l~~~~~d~~i~iwd~~~--~~~~~~~~~----~~~~~~~~i~~~~~~------------------~~~~~l~sgs~ 507 (581)
-.+++|+..|.+.+|.+.- +......+. .+...+..+...... ..-.-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 111111111 222333333222100 01112344445
Q ss_pred CCcEEEEeCCCCceEEEeccCcCCEEEEEEc-----CCCCcEEEEEECCCcEEEEcCCCcCccc
Q 008011 508 DSQVYIWHRYTGELVLALAGHSGSVNCVSWN-----PANLHMLASASDDRTIRIWGLDQINMKH 566 (581)
Q Consensus 508 dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~-----p~~~~~l~s~s~Dg~I~iW~~~~~~~~~ 566 (581)
+..++++...+.+...+.....-....+.+- ..+ ..|++-..+|.|+++.+...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEE
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhh
Confidence 6779999988887766555332233344452 234 688899999999999998776553
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0069 Score=59.71 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=124.8
Q ss_pred CcEEEEECCCCcEEEEEecC-CCeEEEEEEec--C-----CCeEEEEeC----------CCcEEEEeCCCC-----eeEe
Q 008011 339 EAIRRWDVNSGECLHVYEKT-GVGLISCGWFL--D-----GGGIFAGMT----------DKSICLWDLDGR-----ELES 395 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~--~-----~~~l~sg~~----------dg~i~iwd~~~~-----~~~~ 395 (581)
..|++.|..+.+.+..+.-. ...+.+++... + ..++++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777666533 33445444322 1 456777653 288999999773 3322
Q ss_pred e-ccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-e---eeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 396 W-KGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-E---RWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 396 ~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
. .....++|.+++-- ++ .+++ +..+.|.+|++.... . ........++++... ++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 12234578888776 33 4443 345889999987766 2 222334455565554 669999999999999877
Q ss_pred cCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCC-------C--ceEEEeccC-cCCEEEE---EE
Q 008011 471 ESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYT-------G--ELVLALAGH-SGSVNCV---SW 537 (581)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~-------~--~~~~~l~~h-~~~v~~l---~~ 537 (581)
+.....+..+.......+...+.+.. +++.++++..+|.+.++.... + +......-| ...|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 66434455555444455555555542 335999999999999998652 2 222222223 4567777 55
Q ss_pred cC--CCCc-----EEEEEECCCcEEE
Q 008011 538 NP--ANLH-----MLASASDDRTIRI 556 (581)
Q Consensus 538 ~p--~~~~-----~l~s~s~Dg~I~i 556 (581)
.| .+.. .++.++.+|.|..
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 55 2212 4788889999884
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.021 Score=57.97 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=112.8
Q ss_pred cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccC---ccccEEE-----EEEee
Q 008011 340 AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQ---KTLRISD-----MAITD 411 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~-----i~~~~ 411 (581)
.|+||+. .|+.+..+.-..+.+.++.|..+ ..|++...||.+++||+.+.. .+... ....|.. ..+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 4788874 46666666655588999999875 567777899999999997555 21111 1112222 22333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe--eeeE-ecCC---------ceE-EEEECCCCCEEEEEeeCCcEEEEEecCCCceeE
Q 008011 412 DGKRIISICREAAILLLDREANF--ERWI-EEEE---------VIT-SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~---------~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
+| ++....++.+++..--... .... .... ... ...++.+....+....++.+.+.+-... .
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-~--- 211 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-K--- 211 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-c---
Confidence 44 4444455555554332221 0111 0000 000 1234444455555555555554433221 0
Q ss_pred EEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-cCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 479 RYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 479 ~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.+.. .++ +..+..||+++++|.-..+|.+.+....-.+.+..+... ......+.|.-++ .+++.- ...|.+.
T Consensus 212 ~i~~-~~~---i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~--~~~l~lv 284 (410)
T PF04841_consen 212 QIDS-DGP---IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSW--EDELLLV 284 (410)
T ss_pred cccC-CCC---eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEe--CCEEEEE
Confidence 1111 112 223334999999999999999999987666666666544 4567788888776 233333 3456665
Q ss_pred cCCC
Q 008011 558 GLDQ 561 (581)
Q Consensus 558 ~~~~ 561 (581)
....
T Consensus 285 g~~~ 288 (410)
T PF04841_consen 285 GPDG 288 (410)
T ss_pred CCCC
Confidence 5443
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.90 E-value=0.014 Score=62.74 Aligned_cols=194 Identities=15% Similarity=0.179 Sum_probs=121.8
Q ss_pred ccCcEEEEEEcC--CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC--------CCCeEEEe-eCCC
Q 008011 271 HSDEVWFLQFSH--DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP--------NDHQLLTC-GQEE 339 (581)
Q Consensus 271 h~~~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--------~~~~l~s~-~~dg 339 (581)
+.+...+++... |..+++=| ..|-|+.....+.+.....+..-.. ...-.|.| +.++|+.- ....
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg---~~igVFk~~~~~~l~f~t~i~~i~~-~~g~~~~P~k~mL~~~d~~mil~~~~~~~ 504 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRG---SKIGVFKNTDDDGLEFSTAISNIST-PKGKNFTPKKAMLHDQDRNMILLDPNNPN 504 (794)
T ss_pred CCCccceeEeeeccCceEEECC---CcEeEEECCCCCceeeeEEeccccc-CCCcccCcchhhhhccccceEeecCCCCC
Confidence 345556666653 44444433 2488887764333332222211100 01112333 33444443 3457
Q ss_pred cEEEEECCCCcEEEEEecCCCe-EEEEEEec-----CCCeEEEEeCCCcEEEEeCCCC--eeEee---ccCccccEEEEE
Q 008011 340 AIRRWDVNSGECLHVYEKTGVG-LISCGWFL-----DGGGIFAGMTDKSICLWDLDGR--ELESW---KGQKTLRISDMA 408 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~sg~~dg~i~iwd~~~~--~~~~~---~~~~~~~v~~i~ 408 (581)
.|+-.|+++|+.+..+..+... |..++-.. +...-+.|-.+..+..||.+-. ++... ........+|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 8999999999999999888644 55443211 2345678889999999999742 22211 112234678888
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 409 ITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
-+.+| +||+|+.+|.|++||.-... ..+...+.+|..+..+.||+++++.+ +..+.+++.
T Consensus 585 Tt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 585 TTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 87777 79999999999999965433 33445689999999999999999877 667777775
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.88 E-value=0.058 Score=57.90 Aligned_cols=282 Identities=15% Similarity=0.155 Sum_probs=156.6
Q ss_pred cCcEEEEEEcCCC------CEEEEEECCCeEEEEEcccCCeeeEEEeecC--CCCCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 272 SDEVWFLQFSHDG------KYLASSSKDQSAIIWEVKEDGQVSLKHRLSG--HRKPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 272 ~~~V~~l~~s~~g------~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
...|.|+.++|-| +++|.|..+..+.+--...+........+.+ -...|....|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4689999999842 2788888777666555443332222222222 2334556666667889999999998876
Q ss_pred EE--CCCCcE--------------EEEEecC-CCeEEEE------EEecCCCeEEE-----------------------E
Q 008011 344 WD--VNSGEC--------------LHVYEKT-GVGLISC------GWFLDGGGIFA-----------------------G 377 (581)
Q Consensus 344 wd--~~~~~~--------------~~~~~~~-~~~v~~~------~~~~~~~~l~s-----------------------g 377 (581)
|. ..+|.. ++++... ...+.++ -|+.+++.+++ .
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 54 444432 1122111 1111111 11112221111 1
Q ss_pred eCCCcEEEEeCCC---CeeEeeccCccccEEEEEEeeCCCEEEEEEcC--------------CeEEEEECCCCeeee---
Q 008011 378 MTDKSICLWDLDG---RELESWKGQKTLRISDMAITDDGKRIISICRE--------------AAILLLDREANFERW--- 437 (581)
Q Consensus 378 ~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~--- 437 (581)
...+.+.+.-++. -...+ ... ......+++.+....+.+.+.. ..++++|.++.....
T Consensus 690 ~~~~~l~i~tid~iqkl~irt-vpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he 767 (1096)
T KOG1897|consen 690 ANGGALTIGTIDEIQKLHIRT-VPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE 767 (1096)
T ss_pred ecCCceEEEEecchhhcceee-ecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecc
Confidence 1223344443321 11111 111 1245666776644444443321 246677776655211
Q ss_pred Eec---CCceEEEEECCC-CCEEEEEee----------CCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEE
Q 008011 438 IEE---EEVITSFSLSKD-NKYLLVNLI----------NQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 438 ~~~---~~~i~~~~~sp~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 503 (581)
+.. ...+.++.|..| +.++++|+. .|.|.+|.+... ..++....+.-.......+ -.+|+++|
T Consensus 768 f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~--~fngkllA 844 (1096)
T KOG1897|consen 768 FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALV--EFNGKLLA 844 (1096)
T ss_pred ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehh--hhCCeEEE
Confidence 111 223555668877 778888864 578888888773 3344433333222233333 34677777
Q ss_pred EEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 504 SGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
+- +..|++|+..+.+.+..-..|..++..+...-.| ..++.|..=+.|.+-..+.
T Consensus 845 ~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ec--CcEEEEEEccccceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEec
Confidence 55 4579999999888888777888899999988888 6899888777776654443
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.87 E-value=0.045 Score=56.17 Aligned_cols=240 Identities=18% Similarity=0.218 Sum_probs=127.5
Q ss_pred cEEEEEEcCCCCEEEEE-ECCC----eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC---------
Q 008011 274 EVWFLQFSHDGKYLASS-SKDQ----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE--------- 339 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasg-s~dg----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg--------- 339 (581)
.+...++||||+++|.+ +..| .++++|+.++..+ ...+.... ...+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--PDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--EEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--CCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 44467899999988865 3333 5999999876322 11222111 12399999988876665433
Q ss_pred --cEEEEECCCCcE--EEEEecCCCe--EEEEEEecCCCeEEEEeCC----CcEEEEeCCCC-----eeEeeccCccccE
Q 008011 340 --AIRRWDVNSGEC--LHVYEKTGVG--LISCGWFLDGGGIFAGMTD----KSICLWDLDGR-----ELESWKGQKTLRI 404 (581)
Q Consensus 340 --~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~l~sg~~d----g~i~iwd~~~~-----~~~~~~~~~~~~v 404 (581)
.|+.|.+.++.. ...+...... ...+..++|+++++..... ..+.+.++... ....+........
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 378888877642 3445444332 5678889999998765432 35788888764 3444433333222
Q ss_pred EEEEEeeCCCEEEEEE---cCCeEEEEECCCCe-----eeeEecCCceEEEEECCCCCEEEEEee-CC--cEEEEEecCC
Q 008011 405 SDMAITDDGKRIISIC---REAAILLLDREANF-----ERWIEEEEVITSFSLSKDNKYLLVNLI-NQ--EIHLWSIESD 473 (581)
Q Consensus 405 ~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~ 473 (581)
..+... .+.+++... ..+.|...++.... .....+...+.-..+...+.+|++... ++ .|+++++..+
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 333333 333443332 24678888887765 244455553333334445556665554 43 5788888722
Q ss_pred CceeEEEeccccc-eeEEEeeeCCCCCc-EEEEEe-C--CCcEEEEeCCCCceE
Q 008011 474 PKLVSRYKGHKRA-RFVIRSCFGGFEQA-FIASGS-E--DSQVYIWHRYTGELV 522 (581)
Q Consensus 474 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~sgs-~--dg~I~iwd~~~~~~~ 522 (581)
............ +..+. ..++++ +.++.+ . -++++.||+.+++..
T Consensus 360 -~~~~~~~~p~~g~v~~~~---~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVS---GDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -EEEEEEESSSSSEEEEEE---S-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -cEEeeecCCcceEEeccC---CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 333333332222 12221 123333 222222 2 347888888887653
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.84 E-value=0.023 Score=56.81 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=59.6
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCC---------------Cc-EEEEE
Q 008011 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFE---------------QA-FIASG 505 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~-~l~sg 505 (581)
..+.+++.+|++++.++...-|.|.++|+.+. ..++.++|..+.....-......+ .. +++-.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 44788999999999999888899999999987 777777777664332222211111 11 23445
Q ss_pred eCCCcEEEEeCCCCceEEEecc
Q 008011 506 SEDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~l~~ 527 (581)
-.-|.|.||.+++|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 6688999999998888776653
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=0.042 Score=58.27 Aligned_cols=228 Identities=17% Similarity=0.127 Sum_probs=122.2
Q ss_pred CCCCEEEEEECC------CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC-C-----cEEEEECCCC
Q 008011 282 HDGKYLASSSKD------QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-E-----AIRRWDVNSG 349 (581)
Q Consensus 282 ~~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-g-----~i~vwd~~~~ 349 (581)
..+.+++.||.+ ..+..+|..++ .+.....+.... .-.+++.. ++...++||.| | ++..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 345566777766 35778888754 333333333222 23344444 46788889988 3 5778888877
Q ss_pred cEEEEEe--cCCCeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 350 ECLHVYE--KTGVGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 350 ~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
+-...-. ...... +++ .-+|...++|+.|| +|-.||..+.+...........-..-...-+|...++|+.+
T Consensus 360 ~W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred ceeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 6333111 111111 111 22677888899887 47788887766555443333223333334567777788754
Q ss_pred ------CeEEEEECCCCeeeeEe---cCCceEEEEECCCCCEEEEEeeCCc-----EEEEEecCCCceeEEEecccccee
Q 008011 423 ------AAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLINQE-----IHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 423 ------g~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
.++..||..+..-.... ....-..++. -++...++|+.++. |..||..+.. - ...........
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W-~~v~~m~~~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ-W-TMVAPMTSPRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc-e-eEcccCccccc
Confidence 35788998887722211 1111112222 26677777877763 6677776642 1 11111111111
Q ss_pred EEEeeeCCCCCcEEEEEeCCC-----cEEEEeCCCC
Q 008011 489 VIRSCFGGFEQAFIASGSEDS-----QVYIWHRYTG 519 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg-----~I~iwd~~~~ 519 (581)
...++ .-++...++|+.|| +|..||..+.
T Consensus 515 ~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 515 AVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111 23567778888776 4555654443
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.66 E-value=0.015 Score=57.38 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=110.3
Q ss_pred CCEEEEEEC----------CCeEEEEEcccC----CeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC
Q 008011 284 GKYLASSSK----------DQSAIIWEVKED----GQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 284 g~~lasgs~----------dg~i~iwd~~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
..+++.|+. .|.|.++++... .+++..... ...++|++++-. ++. |+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence 468887753 288999999863 244444433 347889998876 444 44443 478999999888
Q ss_pred c-EEEEEec-CCCeEEEEEEecCCCeEEEEeCCCcEEEEeC--CCCeeEeec-cCccccEEEEEEeeCCCEEEEEEcCCe
Q 008011 350 E-CLHVYEK-TGVGLISCGWFLDGGGIFAGMTDKSICLWDL--DGRELESWK-GQKTLRISDMAITDDGKRIISICREAA 424 (581)
Q Consensus 350 ~-~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~ 424 (581)
+ ....-.. ....+.++... ++++++|.....+.++.. ....+.... ......++++.+-++++.+++++.+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 4433322 33466666655 569999998888887744 333333322 222346888888877789999999999
Q ss_pred EEEEECCCC---------e---eeeEecCCceEEE---EECC--CCC------EEEEEeeCCcEEEE
Q 008011 425 ILLLDREAN---------F---ERWIEEEEVITSF---SLSK--DNK------YLLVNLINQEIHLW 468 (581)
Q Consensus 425 i~i~d~~~~---------~---~~~~~~~~~i~~~---~~sp--~~~------~l~~~~~d~~i~iw 468 (581)
+.++..... . .........|+++ ++.| .+. .++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999877631 1 2334456677777 5555 222 47777888888733
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=6.1e-05 Score=66.44 Aligned_cols=145 Identities=12% Similarity=0.142 Sum_probs=89.0
Q ss_pred EEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeC
Q 008011 416 IISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFG 495 (581)
Q Consensus 416 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (581)
+...+.+|.|.-++++............-.....-.-+.-+++|+.+|.|++|...........+...... ....+..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--IDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhccccc--ceecccc
Confidence 44456677777777665441111100000001222245678999999999999876322222222111111 1111222
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc-CCEEEEEEcCCCCcEEEEE--ECCCcEEEEcCCCcC
Q 008011 496 GFEQAFIASGSEDSQVYIWHRYTGELVLALAGHS-GSVNCVSWNPANLHMLASA--SDDRTIRIWGLDQIN 563 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~v~~l~~~p~~~~~l~s~--s~Dg~I~iW~~~~~~ 563 (581)
..++.+.++++.||.|+.|++..++.+.....|. .++..+..+..+ ..++.+ |.|..++.|++....
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 4456689999999999999999999988888887 666666666656 577777 888889999887543
No 373
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.62 E-value=0.12 Score=54.46 Aligned_cols=236 Identities=14% Similarity=0.147 Sum_probs=130.9
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCC---CCCeEEEee------CCCcEEEEECCCCcEEEEE
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSP---NDHQLLTCG------QEEAIRRWDVNSGECLHVY 355 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~ 355 (581)
..++.++.|+.+.-.|..+++..-. .....+... ..+.-+| ++ .++++. .+|.|..+|.++|+.+..+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~-~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS-KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee-ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 4567778899999999887643211 111111110 0111122 34 445443 2688999999999987665
Q ss_pred ecCCC-------------------------------eEE-EEEEecCCCeEEEEeCC-----C-----------cEEEEe
Q 008011 356 EKTGV-------------------------------GLI-SCGWFLDGGGIFAGMTD-----K-----------SICLWD 387 (581)
Q Consensus 356 ~~~~~-------------------------------~v~-~~~~~~~~~~l~sg~~d-----g-----------~i~iwd 387 (581)
..-.. .++ .+++.+....++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 42210 111 23555656667666522 2 566778
Q ss_pred CCCCeeEeeccCcccc---------EEEEEEeeCCC---EEEEEEcCCeEEEEECCCCeee----------eE---e-c-
Q 008011 388 LDGRELESWKGQKTLR---------ISDMAITDDGK---RIISICREAAILLLDREANFER----------WI---E-E- 440 (581)
Q Consensus 388 ~~~~~~~~~~~~~~~~---------v~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~----------~~---~-~- 440 (581)
++++++.-........ ..-+.+..+|+ .++.+..+|.+++.|..+++.. +. . .
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 8887765333221111 12222334665 6778999999999999987631 10 0 0
Q ss_pred CCce----------------------------EEEEECCCCCEEEEEeeC------------------------------
Q 008011 441 EEVI----------------------------TSFSLSKDNKYLLVNLIN------------------------------ 462 (581)
Q Consensus 441 ~~~i----------------------------~~~~~sp~~~~l~~~~~d------------------------------ 462 (581)
..++ ..++++|+..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 0000 125677777666665444
Q ss_pred ---CcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC
Q 008011 463 ---QEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH 528 (581)
Q Consensus 463 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 528 (581)
+.|.-+|+.++ +..-............ . ...+.+++.++.||.++.+|.++|+.+..++-.
T Consensus 438 ~~~g~l~AiD~~tG-k~~W~~~~~~p~~~~~---l-~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITG-KIVWEHKEDFPLWGGV---L-ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCC-ceeeEecCCCCCCCcc---e-EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 23555566555 3333222111100000 0 114457778888999999999999999887654
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.024 Score=54.68 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=128.2
Q ss_pred EEcCCCCEE-EEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEec
Q 008011 279 QFSHDGKYL-ASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 279 ~~s~~g~~l-asgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
.|.++...| .+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 366666644 4444667788888765422 1122 2333455544445556666543 366677766655333221
Q ss_pred C-----CCeEEEEEEecCCCeEEEEeC-----------CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 358 T-----GVGLISCGWFLDGGGIFAGMT-----------DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 358 ~-----~~~v~~~~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
. ....+.+...|+|.+-++... -|.|+.+|.. +........+-...+.++|+||++.++.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 234456777788766554333 1345555543 3444444433336788999999998888766
Q ss_pred C-CeEEEEECCC--Ce----e---eeEecCCceEEEEECCCCCEEEEEeeCC-cEEEEEecCCCceeEEEeccccceeEE
Q 008011 422 E-AAILLLDREA--NF----E---RWIEEEEVITSFSLSKDNKYLLVNLINQ-EIHLWSIESDPKLVSRYKGHKRARFVI 490 (581)
Q Consensus 422 d-g~i~i~d~~~--~~----~---~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~i 490 (581)
. +.|.-|++.. .. . ......+..-.++...+|.+.+++..+| .|..|+.+ + +++..+..+.. ...
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~--~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G-KLLGEIKLPVK--RPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C-cEEEEEECCCC--CCc
Confidence 4 7888887762 11 1 1112346677788888898876555554 89999988 4 67777666532 235
Q ss_pred EeeeCCCCCcEEEEEeC
Q 008011 491 RSCFGGFEQAFIASGSE 507 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~ 507 (581)
.++|..++.+.|+..+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 56777877776655554
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00016 Score=45.04 Aligned_cols=38 Identities=42% Similarity=0.716 Sum_probs=34.1
Q ss_pred cceeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEE
Q 008011 263 QTLQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWE 300 (581)
Q Consensus 263 ~~~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd 300 (581)
++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34667778999999999999999999999999999996
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.074 Score=51.40 Aligned_cols=220 Identities=16% Similarity=0.202 Sum_probs=125.6
Q ss_pred EeCCCCCeEE-EeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCee-Eeec----
Q 008011 324 SWSPNDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGREL-ESWK---- 397 (581)
Q Consensus 324 ~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~---- 397 (581)
.|.++...|+ +--..+.|.-|+..+++. ..+.... .+.+......+..|+++.. .+.+++.+.+.. ..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4666666444 444567788888876653 2332222 3344444444545555433 355566544333 2211
Q ss_pred cCccccEEEEEEeeCCCEEEEEEc-----------CCeEEEEECCCCeeeeEec-CCceEEEEECCCCCEEEEEee-CCc
Q 008011 398 GQKTLRISDMAITDDGKRIISICR-----------EAAILLLDREANFERWIEE-EEVITSFSLSKDNKYLLVNLI-NQE 464 (581)
Q Consensus 398 ~~~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~-d~~ 464 (581)
.......++..+.|+|.+.+.... -|.|+.+|......+.... -...+.++||||++.|+++.. .+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 222346788899999886665433 1456667764444443333 556788999999988887765 478
Q ss_pred EEEEEecC--C---Cce-eEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-cEEEEeCCCCceEEEeccCcCCEEEEEE
Q 008011 465 IHLWSIES--D---PKL-VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-QVYIWHRYTGELVLALAGHSGSVNCVSW 537 (581)
Q Consensus 465 i~iwd~~~--~---~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~v~~l~~ 537 (581)
|+-|++.. . ... ...+....+..-.+ + ...+|++-+++..+| .|.+|+.. |+++..+.-+...+++++|
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~--~-vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM--A-VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCce--E-EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 88887762 1 010 11111111110011 1 144666665555554 89999987 9999988877778888888
Q ss_pred cC-CCCcEEEEEECC
Q 008011 538 NP-ANLHMLASASDD 551 (581)
Q Consensus 538 ~p-~~~~~l~s~s~D 551 (581)
-- +...+++|+...
T Consensus 263 gG~~~~~L~iTs~~~ 277 (307)
T COG3386 263 GGPDLNTLYITSARS 277 (307)
T ss_pred eCCCcCEEEEEecCC
Confidence 64 343455555544
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00054 Score=69.10 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=77.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeE-EEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 270 AHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVF-TVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 270 ~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
.-.-.|.-+.|+|.-.++|++..+|.|.+..+. +..+.++.-|...++ +++|.|||+.||+|-.||+|++.|+++
T Consensus 18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 344568889999999999999999999998885 245566776777777 999999999999999999999999999
Q ss_pred CcEEEEEe-cCCCeEEEEEEe
Q 008011 349 GECLHVYE-KTGVGLISCGWF 368 (581)
Q Consensus 349 ~~~~~~~~-~~~~~v~~~~~~ 368 (581)
+..+..+. .....|.++.|.
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCceeccccccccchheeecc
Confidence 98776632 224567777775
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.50 E-value=0.00032 Score=43.62 Aligned_cols=39 Identities=51% Similarity=0.924 Sum_probs=34.3
Q ss_pred CceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEc
Q 008011 519 GELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWG 558 (581)
Q Consensus 519 ~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~ 558 (581)
+++...+..|...|+++.|++.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 35567777899999999999988 7999999999999996
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.44 E-value=0.01 Score=46.79 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred eEEEEeCC---CC-CeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe
Q 008011 320 VFTVSWSP---ND-HQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 320 V~~l~~sp---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 395 (581)
|++|++.. +| +.|++|+.|..|++|+- .+.+..+.... .|++++-... ..++.+..+|+|-+|+-..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-KVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-ceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666654 32 57999999999999984 45666665544 6777776655 6799999999999998643332
Q ss_pred eccCccccEEEEEEeeC---C-CEEEEEEcCCeEE
Q 008011 396 WKGQKTLRISDMAITDD---G-KRIISICREAAIL 426 (581)
Q Consensus 396 ~~~~~~~~v~~i~~~~~---~-~~l~~~~~dg~i~ 426 (581)
.......+.++++..- | ..|++|-.+|.|-
T Consensus 76 -RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222234666655432 2 2688888887764
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.41 E-value=0.016 Score=61.33 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=121.7
Q ss_pred CCeEEEeeCC------CcEEEEECCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCC-C-----cEEEEeCCCCeeEe
Q 008011 329 DHQLLTCGQE------EAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTD-K-----SICLWDLDGRELES 395 (581)
Q Consensus 329 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~d-g-----~i~iwd~~~~~~~~ 395 (581)
+.+++.||.+ ..+..||..++.-.....-. ...-.+++.. ++...++|+.| | ++..||....+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 3445555554 35777887776433322211 1122333333 56778888888 3 67888888777544
Q ss_pred eccCccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCeeeeE-ecCCceEEEEE-CCCCCEEEEEeeCC-----
Q 008011 396 WKGQKTLRISDMAITDDGKRIISICREA-----AILLLDREANFERWI-EEEEVITSFSL-SKDNKYLLVNLINQ----- 463 (581)
Q Consensus 396 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~-~~~~~i~~~~~-sp~~~~l~~~~~d~----- 463 (581)
.......+...-...-+|...++|+.|| ++..||..+.+-... .......+... .-+|...++|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 3333332333333344677888888886 477888888772221 12222222222 22677777777554
Q ss_pred -cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC-----cEEEEeCCCCceEEE--eccCcCCEEEE
Q 008011 464 -EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS-----QVYIWHRYTGELVLA--LAGHSGSVNCV 535 (581)
Q Consensus 464 -~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~--l~~h~~~v~~l 535 (581)
++..||..++. -.. ...-.........+ .-++.+.+.|+.|+ +|..||..+.+-... +....+.+-.+
T Consensus 444 ~sve~YDP~t~~-W~~-~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 444 NSVECYDPETNT-WTL-IAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ceEEEEcCCCCc-eee-cCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 46777776641 111 11111111111111 34677888888776 377788776554332 22223333333
Q ss_pred EEcCCCCcEEEEEECCC-----cEEEEcCCCcC
Q 008011 536 SWNPANLHMLASASDDR-----TIRIWGLDQIN 563 (581)
Q Consensus 536 ~~~p~~~~~l~s~s~Dg-----~I~iW~~~~~~ 563 (581)
.+ ++ .+.+.|+.|| +|..||..+.+
T Consensus 520 ~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 520 VL--GG-KLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EE--CC-EEEEEecccCccccceeEEcCCCCCc
Confidence 33 23 6888888886 46677766554
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00081 Score=67.89 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEE-EEEEecCCCeEEEEeCCCcEEEEeCCCCeeEe
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLI-SCGWFLDGGGIFAGMTDKSICLWDLDGRELES 395 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 395 (581)
...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..++..++ +++|.|||+.|++|-.||+|++.|+.++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 777888887777777 99999999999999999999999998665443
Q ss_pred e-ccCccccEEEEEEe
Q 008011 396 W-KGQKTLRISDMAIT 410 (581)
Q Consensus 396 ~-~~~~~~~v~~i~~~ 410 (581)
. .......|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 3 22223356666665
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.40 E-value=0.016 Score=61.32 Aligned_cols=182 Identities=10% Similarity=0.090 Sum_probs=103.4
Q ss_pred CcEEEEEEcCCCCEEEEEE------CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC--------
Q 008011 273 DEVWFLQFSHDGKYLASSS------KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-------- 338 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs------~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-------- 338 (581)
..+...++||||+.+|... .|+.-.||-...++.... ...+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999999887665 244445554433332222 12232 37888999998877776532
Q ss_pred ----CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEE---EeCCCCeeEe-----eccCccccEEE
Q 008011 339 ----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICL---WDLDGRELES-----WKGQKTLRISD 406 (581)
Q Consensus 339 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i---wd~~~~~~~~-----~~~~~~~~v~~ 406 (581)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|++ -....+.... ....-...+.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 223333444333322 2345799999999999988766 477777 3434443111 11222223678
Q ss_pred EEEeeCCCEEEEEEcCC--eEEEEECCCCeeeeEec---CCceEEEEECCCCCEEEEEeeCCcE
Q 008011 407 MAITDDGKRIISICREA--AILLLDREANFERWIEE---EEVITSFSLSKDNKYLLVNLINQEI 465 (581)
Q Consensus 407 i~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i 465 (581)
+.|..++..+ ++..++ .+...++.......... ...+..++-+++ .+++...++.+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9999999855 444433 34444555444222122 445666666652 35555555533
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.37 E-value=0.017 Score=61.39 Aligned_cols=224 Identities=11% Similarity=0.103 Sum_probs=113.3
Q ss_pred eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC------CcEEEEECCCCcEEEEEe--cCCCeEEEEE
Q 008011 295 SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAIRRWDVNSGECLHVYE--KTGVGLISCG 366 (581)
Q Consensus 295 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~--~~~~~v~~~~ 366 (581)
.+..||..++ .+.....+...... .+++. -++...+.||.+ ..+..||..+..-...-. ...... +++
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 4667777653 33332222221111 12222 256677777754 347788887765322111 111111 222
Q ss_pred EecCCCeEEEEeCCC-----cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC-------------------
Q 008011 367 WFLDGGGIFAGMTDK-----SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE------------------- 422 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------------- 422 (581)
.-++...+.|+.++ .+..||..+.................+..-++...+.|+.+
T Consensus 349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 23677777787754 48889988766554333222121122223467777777654
Q ss_pred ----CeEEEEECCCCeeeeEe---cCCceEEEEECCCCCEEEEEeeC------CcEEEEEecC-C-CceeEEEeccccce
Q 008011 423 ----AAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN------QEIHLWSIES-D-PKLVSRYKGHKRAR 487 (581)
Q Consensus 423 ----g~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~-~-~~~~~~~~~~~~~~ 487 (581)
..+..||..+..-.... ....-.+++ .-+++..++|+.+ ..+..||..+ . -..+..+.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-- 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-- 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--
Confidence 24778888877621111 111111122 2256666667653 2366788776 3 122222221111
Q ss_pred eEEEeeeCCCCCcEEEEEeCCC--cEEEEeCCCCceEEEeccCc
Q 008011 488 FVIRSCFGGFEQAFIASGSEDS--QVYIWHRYTGELVLALAGHS 529 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~ 529 (581)
....+ .-++++.++|+.+| .+..||..+.+-...-..|+
T Consensus 505 -~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 505 -ALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred -cceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 11111 33778888999888 77788877766554444443
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0068 Score=65.23 Aligned_cols=102 Identities=16% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeE
Q 008011 283 DGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGL 362 (581)
Q Consensus 283 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 362 (581)
.+..++.|+..|.+-..|+..+ +.....-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4557888988899988888643 22223333456789999999999999999999999999999999998888775554
Q ss_pred E---EEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 363 I---SCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 363 ~---~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
+ .+.|..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 4455566777888877776 5554
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.076 Score=49.35 Aligned_cols=161 Identities=11% Similarity=0.114 Sum_probs=107.4
Q ss_pred ecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 008011 313 LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDLDGR 391 (581)
Q Consensus 313 ~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 391 (581)
+.+-...|.++.|+|+.+.|++......-.||=-.+|+.+.++.-. -...-.+.|..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455556999999999999999998888888887889998887633 223456778878888887778888888877532
Q ss_pred -eeEe---------eccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEe------------cCCceEEEEE
Q 008011 392 -ELES---------WKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE------------EEEVITSFSL 449 (581)
Q Consensus 392 -~~~~---------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~i~~~~~ 449 (581)
.... .....+.....++|.|....|..+-.-.-+.+|........... .-..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 1111 11122446788999999999998888777777766543311110 1123566777
Q ss_pred CCC-CCEEEEEeeCCcEEEEEecCC
Q 008011 450 SKD-NKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 450 sp~-~~~l~~~~~d~~i~iwd~~~~ 473 (581)
++. +..++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 764 444555555566666666553
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.024 Score=60.11 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=90.8
Q ss_pred CCCCeEEEEeCCCCCeEEEee------CCC--cEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC-------
Q 008011 316 HRKPVFTVSWSPNDHQLLTCG------QEE--AIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------- 380 (581)
Q Consensus 316 h~~~V~~l~~sp~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------- 380 (581)
....+...+++|+|+.++... .|. .|.+++. .+.. ..+.... ..+.-.|+|||..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999999887765 244 4555554 2222 3332222 37788999998877766432
Q ss_pred -----CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEE---EECCCCeeee------Ee-cCCceE
Q 008011 381 -----KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILL---LDREANFERW------IE-EEEVIT 445 (581)
Q Consensus 381 -----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~------~~-~~~~i~ 445 (581)
+.+.+.+++.+.... .....|..+.|+|||.+++... ++.|++ -....+.... .. ....+.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 234444554444333 2234799999999999988876 477777 4444443222 12 233468
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEec
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
++.|.+++.++ ++..++...+|.+.
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEe
Confidence 89999999854 55555555555543
No 387
>PHA02713 hypothetical protein; Provisional
Probab=97.26 E-value=0.02 Score=60.82 Aligned_cols=186 Identities=6% Similarity=-0.005 Sum_probs=97.9
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCeeee-
Q 008011 370 DGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREA-----AILLLDREANFERW- 437 (581)
Q Consensus 370 ~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~- 437 (581)
++..+++|+.+ ..+..||..+.............-......-+|+..+.|+.++ .+..||..+..-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56666777753 3477889877665443332222222233344677777777653 48889988776211
Q ss_pred EecCCc---eEEEEECCCCCEEEEEeeCC-----------------------cEEEEEecCCCceeEEEeccccceeEEE
Q 008011 438 IEEEEV---ITSFSLSKDNKYLLVNLINQ-----------------------EIHLWSIESDPKLVSRYKGHKRARFVIR 491 (581)
Q Consensus 438 ~~~~~~---i~~~~~sp~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 491 (581)
.....+ ...+. -+++..++|+.++ .+..||..+. +- .....-......
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W-~~v~~m~~~r~~-- 456 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IW-ETLPNFWTGTIR-- 456 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eE-eecCCCCccccc--
Confidence 111111 11222 2577777776542 4666776654 11 111110001000
Q ss_pred eeeCCCCCcEEEEEeCC------CcEEEEeCCC-C--ceEEEeccCcCCEEEEEEcCCCCcEEEEEECCC--cEEEEcCC
Q 008011 492 SCFGGFEQAFIASGSED------SQVYIWHRYT-G--ELVLALAGHSGSVNCVSWNPANLHMLASASDDR--TIRIWGLD 560 (581)
Q Consensus 492 ~~~~~~~~~~l~sgs~d------g~I~iwd~~~-~--~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg--~I~iW~~~ 560 (581)
......++++.+.|+.+ ..+..||..+ . ..+..+.........+.. ++ ++.++||.|| ++-.||..
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcc
Confidence 11112356666777654 2467899776 3 334444433333333333 44 7899999888 77778887
Q ss_pred CcCc
Q 008011 561 QINM 564 (581)
Q Consensus 561 ~~~~ 564 (581)
+.+=
T Consensus 534 ~~~W 537 (557)
T PHA02713 534 TYEW 537 (557)
T ss_pred cccc
Confidence 6653
No 388
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.23 E-value=0.29 Score=49.30 Aligned_cols=273 Identities=11% Similarity=0.054 Sum_probs=147.7
Q ss_pred CCEEEEEECCCeEEEEEcccCC-eeeEEEeecCCCCCeEEEEeCC-----CCCeEEEeeCCCcEEEEECCC--Cc-----
Q 008011 284 GKYLASSSKDQSAIIWEVKEDG-QVSLKHRLSGHRKPVFTVSWSP-----NDHQLLTCGQEEAIRRWDVNS--GE----- 350 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~sp-----~~~~l~s~~~dg~i~vwd~~~--~~----- 350 (581)
...+++||..|.++||+...++ +..-...-..-..+|..+..-+ +...||+ =.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 4589999999999999986432 1111111122346777777543 2234444 4556788887721 11
Q ss_pred --EEEEEecC--CCeEEEEEEec----C-CCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 351 --CLHVYEKT--GVGLISCGWFL----D-GGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 351 --~~~~~~~~--~~~v~~~~~~~----~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
.+..+..| ......+++-| . ..++.+-+.||.+.+|+-+.-......... --...+++.+....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEEecC
Confidence 12222223 22333344333 2 357888899999999998776655544442 24567889999999999999
Q ss_pred CCeEEEEECCCCe------------------------eeeEecCCceEEEE---ECCCCCEEEEEeeCCcEEEEEecCCC
Q 008011 422 EAAILLLDREANF------------------------ERWIEEEEVITSFS---LSKDNKYLLVNLINQEIHLWSIESDP 474 (581)
Q Consensus 422 dg~i~i~d~~~~~------------------------~~~~~~~~~i~~~~---~sp~~~~l~~~~~d~~i~iwd~~~~~ 474 (581)
+..+..|....-. .....-...+..+. ++.....+++-+ ...+.+.+-...-
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G~l 273 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNGSL 273 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCCeE
Confidence 9888888653211 11122233344333 333333333333 4455555544322
Q ss_pred ceeEEEeccccceeEEEee-eCCCC-CcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEc--CCCCcEEEEEEC
Q 008011 475 KLVSRYKGHKRARFVIRSC-FGGFE-QAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWN--PANLHMLASASD 550 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~-~~~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~--p~~~~~l~s~s~ 550 (581)
+..+++............. ...++ ...++.++.++.+.||.= .+++..-+....+| ++... ++-+.+|++-+.
T Consensus 274 ~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~ 350 (418)
T PF14727_consen 274 RFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSD 350 (418)
T ss_pred EEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcC
Confidence 2233333222211111110 11122 235888999999999963 33433333223333 33322 222248999999
Q ss_pred CCcEEEEcCCCc
Q 008011 551 DRTIRIWGLDQI 562 (581)
Q Consensus 551 Dg~I~iW~~~~~ 562 (581)
+|.+.+-=+.+.
T Consensus 351 ~G~L~v~YLGTd 362 (418)
T PF14727_consen 351 EGQLSVSYLGTD 362 (418)
T ss_pred CCcEEEEEeCCC
Confidence 999998766543
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.22 E-value=0.095 Score=46.86 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=91.5
Q ss_pred ccEEEEEEeeCCCEEEEEEc---------CCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEE-eeCCcEEEEE--
Q 008011 402 LRISDMAITDDGKRIISICR---------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVN-LINQEIHLWS-- 469 (581)
Q Consensus 402 ~~v~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd-- 469 (581)
.+.++-..+|+|++++-.-. .|.++.|-...........-.--+.++|+.+.+.+... +.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 46777888999998443222 35566666555544444444556788999887766654 4466787787
Q ss_pred ecCCC----ceeEEEecc-----cc-ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcC
Q 008011 470 IESDP----KLVSRYKGH-----KR-ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNP 539 (581)
Q Consensus 470 ~~~~~----~~~~~~~~~-----~~-~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p 539 (581)
..++. +.+..+... .. ....| ..+|++.++.-+.++|...|..+|+.+.++.-....|++++|--
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44431 222222211 10 11111 44778888888889999999999999999998899999999975
Q ss_pred CCC-cEEEEEEC
Q 008011 540 ANL-HMLASASD 550 (581)
Q Consensus 540 ~~~-~~l~s~s~ 550 (581)
.+- -+.+|+..
T Consensus 264 kn~d~~yvT~aa 275 (310)
T KOG4499|consen 264 KNLDILYVTTAA 275 (310)
T ss_pred CCccEEEEEehh
Confidence 421 24445443
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.17 E-value=0.045 Score=43.17 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=66.6
Q ss_pred EEEEEEcC---CC-CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 275 VWFLQFSH---DG-KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 275 V~~l~~s~---~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
|+++++.. || +.|+.||.|..|+||+-+ .....+.. .+.|+++.-... ..++.+-.+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 56666554 43 489999999999999865 23444443 355777776655 67999999999999974 33
Q ss_pred EEEEEecCCCeEEEEEEecCC----CeEEEEeCCCcEE
Q 008011 351 CLHVYEKTGVGLISCGWFLDG----GGIFAGMTDKSIC 384 (581)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~~----~~l~sg~~dg~i~ 384 (581)
.+...+... .++++.+..-. ..|++|-.+|.|-
T Consensus 73 RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344444333 36666655422 2588888888764
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.009 Score=59.38 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred CCCeEE-EeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCC-------eEEEEeCCCcEEEEeCCC--CeeEeec
Q 008011 328 NDHQLL-TCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGG-------GIFAGMTDKSICLWDLDG--RELESWK 397 (581)
Q Consensus 328 ~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~sg~~dg~i~iwd~~~--~~~~~~~ 397 (581)
+.++|+ ++.....++-.|++.|+.+...+.+.. |.-+.+.|+.+ .-+.|-.|..|.-||++- .....+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788889999999999988775 66677777543 245677889999999963 2122222
Q ss_pred cCc----cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008011 398 GQK----TLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 398 ~~~----~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
..+ .....|.+-..+| ++++|+.+|.|++||.-... ..+.....+|..+..+.+|+++++.+ +..+.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 211 2346677766666 79999999999999984333 45567788999999999999998766 6666666653
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.06 E-value=0.32 Score=46.76 Aligned_cols=273 Identities=11% Similarity=0.063 Sum_probs=126.1
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccC-CeeeEEEeecCC--CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKED-GQVSLKHRLSGH--RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~-~~~~~~~~~~~h--~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~ 348 (581)
...+..|.|..+.+-+|+|. .+. |+...++ ..+.....-... .-...++.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 45788999986666666654 453 4444433 334332211111 123667777643 3344 44454 33444444
Q ss_pred CcEEEEEe---cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeE
Q 008011 349 GECLHVYE---KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAI 425 (581)
Q Consensus 349 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 425 (581)
|+.-..+. .-......+....++ .....+..|.|+.=.=.+..-..........+..+..+++|++++++......
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~ 168 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY 168 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence 54333322 112233444444444 33434455665543323333344344444578889999999988888776667
Q ss_pred EEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEE-Eecccccee-EEEeeeCCCCCcE
Q 008011 426 LLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSR-YKGHKRARF-VIRSCFGGFEQAF 501 (581)
Q Consensus 426 ~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~-~i~~~~~~~~~~~ 501 (581)
.-||.-... .........|.++.|+|++...+++ ..|.|++=+.......... ........+ .+...+ .+++..
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~-~~~~~~ 246 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY-RPPNEI 246 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE-SSSS-E
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe-cCCCCE
Confidence 788876543 3444467889999999998776654 7888888772221111111 111112222 344444 555555
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEec---cCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 502 IASGSEDSQVYIWHRYTGELVLALA---GHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 502 l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.++|+ .|.+. .....|+.-.... .-.+.++.|.|.+.. .-...+.+|.|.-|
T Consensus 247 wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred EEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence 55554 44333 3345555544433 234568888887654 34455678877655
No 393
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.04 E-value=0.0073 Score=64.92 Aligned_cols=135 Identities=15% Similarity=0.221 Sum_probs=86.1
Q ss_pred cCCeEEEEECCCCe--eeeEecC-CceEEEEECC-----CCCEEEEEeeCCcEEEEEecCCC-ceeEEEeccc-cceeEE
Q 008011 421 REAAILLLDREANF--ERWIEEE-EVITSFSLSK-----DNKYLLVNLINQEIHLWSIESDP-KLVSRYKGHK-RARFVI 490 (581)
Q Consensus 421 ~dg~i~i~d~~~~~--~~~~~~~-~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~-~~~~~i 490 (581)
....|+-.|+..++ ..+..+. .+|..++-.. +...-++|-.++.+..||.+-.. +++.. ..+. ......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccCCCc
Confidence 45789999999988 3333333 3345444321 23346778889999999998753 23321 1111 111123
Q ss_pred EeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 491 RSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.+.. ....-+||.|+.+|.|++||.-..+....+.+-..+|.+|..+.||..+|+|| +..+.+++.
T Consensus 581 s~~a-Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFA-TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eEEE-ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 3333 44556899999999999999543333445667789999999999996555555 457777775
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.026 Score=51.90 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=108.5
Q ss_pred EEcCCCCEEEEEECC-----CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC---------------
Q 008011 279 QFSHDGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--------------- 338 (581)
Q Consensus 279 ~~s~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--------------- 338 (581)
.|||||.+|...-.| |.|-|||.. ..+..+..+..|.-.-..+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 499999998876443 789999997 4456677788888888899999999998876430
Q ss_pred ---CcEEEEECCCCcEEEEEe----cCCCeEEEEEEecCCCeEEEEeCCCcE-----EE-EeCCCCeeEeecc------C
Q 008011 339 ---EAIRRWDVNSGECLHVYE----KTGVGLISCGWFLDGGGIFAGMTDKSI-----CL-WDLDGRELESWKG------Q 399 (581)
Q Consensus 339 ---g~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i-----~i-wd~~~~~~~~~~~------~ 399 (581)
-.+.+.|..+|..+.+.. .+...+..++.-+||...+.+-..|.- .+ .-..++.+..+.. .
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 123344444454433221 223456666666666555444332210 00 0001111111110 1
Q ss_pred ccccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 400 KTLRISDMAITDDGKRIISIC-REAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 400 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
....|-+++.+.+..+++..+ ..+...+||..++.......-.....++- ...-+++.+.+|.+.++.-
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~--~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAA--AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccccee--ccCceEEecCCceEEeccc
Confidence 123577788876655555555 45567889999987444333333333333 3334666677888877743
No 395
>PRK10115 protease 2; Provisional
Probab=96.96 E-value=0.83 Score=49.93 Aligned_cols=239 Identities=10% Similarity=0.030 Sum_probs=120.1
Q ss_pred CcEEEEEEcCCCCEEEEEECC-----CeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC------CcE
Q 008011 273 DEVWFLQFSHDGKYLASSSKD-----QSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE------EAI 341 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d------g~i 341 (581)
-.+..+.+||||++|+.+... ..+++-|+.++..+ ...+.+- -..++|.+|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--CccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 346678899999988866322 34778888755211 1112111 1469999999877665442 357
Q ss_pred EEEECCCC--cEEEEEecCCCeEEEEEEec-CCCeEEEEeC---CCcEEEEeCC--CCeeEeeccCccccEEEEEEeeCC
Q 008011 342 RRWDVNSG--ECLHVYEKTGVGLISCGWFL-DGGGIFAGMT---DKSICLWDLD--GRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 342 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
..+++.++ +-...+........-..+.+ ++++++..+. ++.+.+++.. .+...............+. + .+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H-YQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-CC
Confidence 88888887 44445554333333233334 7777665443 4578888852 2222222222211222222 2 23
Q ss_pred CEEEEEEcC----CeEEEEECCC-Ce-eeeEec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccc
Q 008011 414 KRIISICRE----AAILLLDREA-NF-ERWIEE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHK 484 (581)
Q Consensus 414 ~~l~~~~~d----g~i~i~d~~~-~~-~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~ 484 (581)
..+...+.. ..|...++.. .. .....+ ...+..+.+. .+.++++...++.-+++-+......+..+. ...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 344443332 2354455542 22 344444 2367778887 334455555566655555443212333332 111
Q ss_pred cceeEEEeeeCCCCC-cEEEEEeC---CCcEEEEeCCCCc
Q 008011 485 RARFVIRSCFGGFEQ-AFIASGSE---DSQVYIWHRYTGE 520 (581)
Q Consensus 485 ~~~~~i~~~~~~~~~-~~l~sgs~---dg~I~iwd~~~~~ 520 (581)
.....+. ....+++ .++++.+. -+.++.+|..+++
T Consensus 359 ~~~~~~~-~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIA-YNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeec-ccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 1111111 1111333 34444433 4588899987765
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.28 Score=45.78 Aligned_cols=184 Identities=11% Similarity=0.126 Sum_probs=114.4
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEE-eCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-
Q 008011 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLW-DLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF- 434 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~- 434 (581)
+-...+.++.|+|+.+.|++......-.++ +.++.-+....-..-.....|.+..++++.++--++..++++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 444568999999999999988777766565 444444444433333456778898888888888888988888766543
Q ss_pred -ee----eE-----ec-CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeE--EEeccccc----eeEEEe-eeCC
Q 008011 435 -ER----WI-----EE-EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVS--RYKGHKRA----RFVIRS-CFGG 496 (581)
Q Consensus 435 -~~----~~-----~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~----~~~i~~-~~~~ 496 (581)
.. .+ .+ +.....++|+|....|+++-+-.-+.||.+........ ....+... ...+.. .|..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 10 11 11 45577899999999999988888777777764422211 11111111 111222 2334
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEeccCc------C---CEEEEEEcCCC
Q 008011 497 FEQAFIASGSEDSQVYIWHRYTGELVLALAGHS------G---SVNCVSWNPAN 541 (581)
Q Consensus 497 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~------~---~v~~l~~~p~~ 541 (581)
..+.+++-+.+++.+.-.|. .|+.+..+.-+. . .--+|+..++|
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g 295 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDG 295 (316)
T ss_pred CCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCC
Confidence 46778888888888888885 455444433221 1 23456666666
No 397
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0062 Score=58.48 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCccC-C------HHHHHHHHHHHcCChHHHHHHhhcCC--CCChhHHHHHHHH
Q 008011 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH-S------SVVNQFMQQVMDGYWDESIITLHMIG--LSDETAVKSASFL 135 (581)
Q Consensus 65 e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~-~------~~~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~~ 135 (581)
.++.+|..|++..|..+.+..|-+|+|.... . ..+.++.+++..|+-.-|+..+..-. +.. ....+.|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~~ 195 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHHH
Confidence 3599999999999999999999999999864 2 26888889999999988888776432 222 23468899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHhhcccccccC
Q 008011 136 ILEQKFLELLRRDKVS--AALNSLRSEIVPLQIN 167 (581)
Q Consensus 136 i~~q~~lell~~~~~~--~a~~~l~~~l~pl~~~ 167 (581)
+.++.|++++..|... +|+...|+.++|+...
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~ 229 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVAD 229 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccc
Confidence 9999999999997776 9999999999998653
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.89 E-value=0.54 Score=46.72 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=93.0
Q ss_pred CCCEEEEEE-CCCeEEEEEcccCC-eeeEEEeecC---CC----CCeEEEEeCCCCCeEEEeeC------CCcEEEEECC
Q 008011 283 DGKYLASSS-KDQSAIIWEVKEDG-QVSLKHRLSG---HR----KPVFTVSWSPNDHQLLTCGQ------EEAIRRWDVN 347 (581)
Q Consensus 283 ~g~~lasgs-~dg~i~iwd~~~~~-~~~~~~~~~~---h~----~~V~~l~~sp~~~~l~s~~~------dg~i~vwd~~ 347 (581)
+.++|+..+ ..+.|+|.|+.++. ..++.+.+.. +. ..-..+.--|+|..++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 67889999998543 2233333322 11 11122333478888888632 2458888888
Q ss_pred CCcEEEEEecC---CCeEEEEEEecCCCeEEEEeC--------------------CCcEEEEeCCCCeeEeeccCcc--c
Q 008011 348 SGECLHVYEKT---GVGLISCGWFLDGGGIFAGMT--------------------DKSICLWDLDGRELESWKGQKT--L 402 (581)
Q Consensus 348 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~sg~~--------------------dg~i~iwd~~~~~~~~~~~~~~--~ 402 (581)
+.+........ ..--...-|.|..+.+++... ..++.+||+.+++..+...... .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77777666543 223456677787777777532 4579999999988876665432 2
Q ss_pred cEEEEEEeeC--CCEEEEE-EcCCeEEEE-ECCCCe---eeeEec--------------------CCceEEEEECCCCCE
Q 008011 403 RISDMAITDD--GKRIISI-CREAAILLL-DREANF---ERWIEE--------------------EEVITSFSLSKDNKY 455 (581)
Q Consensus 403 ~v~~i~~~~~--~~~l~~~-~~dg~i~i~-d~~~~~---~~~~~~--------------------~~~i~~~~~sp~~~~ 455 (581)
.+..+.|..+ ..+-.++ .-.++|..| ....+. ...+.. ..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3445666543 4433333 334444444 334433 111110 345799999999999
Q ss_pred EEEEee-CCcEEEEEecCCCceeE
Q 008011 456 LLVNLI-NQEIHLWSIESDPKLVS 478 (581)
Q Consensus 456 l~~~~~-d~~i~iwd~~~~~~~~~ 478 (581)
|.+++- .|.|+.||+.....+..
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EE
T ss_pred EEEEcccCCcEEEEecCCCCCCcE
Confidence 988775 89999999988654443
No 399
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0099 Score=59.12 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=86.8
Q ss_pred EEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCE-------EEEEeeCCcEEEEEecCCCc-eeEEEecccccee
Q 008011 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKY-------LLVNLINQEIHLWSIESDPK-LVSRYKGHKRARF 488 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~-------l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 488 (581)
+.....++-.|++.++ ..+.-+ ..|+-+.+.|+.+. -++|-.++.|.-||.+-... .+..-.+|.-...
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k 430 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFE-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK 430 (644)
T ss_pred CCCcCcceeeecccceeeeEeecc-CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence 3344567777777777 223323 33777777775532 35567789999999986433 2333333332111
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
.--.|+.....-+|++||.+|.|++||.-.-.....+++-..+|..|..+.+|..+|+|| +..+.+-++
T Consensus 431 ~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 431 NNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred cccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 111233345566899999999999999733334456778889999999999995455554 456666554
No 400
>PRK10115 protease 2; Provisional
Probab=96.84 E-value=1 Score=49.20 Aligned_cols=237 Identities=11% Similarity=0.086 Sum_probs=118.6
Q ss_pred CeEEEEeCCCCCeEEEeeCC-----CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCC------CcEEEEe
Q 008011 319 PVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTD------KSICLWD 387 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------g~i~iwd 387 (581)
.+..+.|+||+++|+.+... ..|++.|+.+|..+...-... -..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988776432 258899998886432211111 1458999999887766542 3688888
Q ss_pred CCCC--eeEeeccCccccEE-EEEEeeCCCEEEEEEc---CCeEEEEECCC--Ce-eeeEecCCc-eEEEEECCCCCEEE
Q 008011 388 LDGR--ELESWKGQKTLRIS-DMAITDDGKRIISICR---EAAILLLDREA--NF-ERWIEEEEV-ITSFSLSKDNKYLL 457 (581)
Q Consensus 388 ~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~---dg~i~i~d~~~--~~-~~~~~~~~~-i~~~~~sp~~~~l~ 457 (581)
+.+. +-............ .+..+.++++++..+. ++.+.+++... .. ......... ...+. +.. ..+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEE
Confidence 8765 22222222222222 3334447887665543 35688888532 22 222233222 22222 223 3343
Q ss_pred EEeeC--CcEEEE--EecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEE--EeCCCCceEEEec-cCcC
Q 008011 458 VNLIN--QEIHLW--SIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYI--WHRYTGELVLALA-GHSG 530 (581)
Q Consensus 458 ~~~~d--~~i~iw--d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~i--wd~~~~~~~~~l~-~h~~ 530 (581)
..+.. ...+|. ++... .....+..+.... .+....+. .+.++++...+|.-++ ++..++ .+..+. ....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~-~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~ 359 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDE-QQWEELIPPRENI-MLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPA 359 (686)
T ss_pred EEEcCCCCCceEEEecCCCc-ccCeEEECCCCCC-EEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCc
Confidence 33332 233333 44321 1223333332211 22222212 4466677777775444 454333 334333 2222
Q ss_pred CEEEEEEc--CCCCcEEEEEEC---CCcEEEEcCCCcC
Q 008011 531 SVNCVSWN--PANLHMLASASD---DRTIRIWGLDQIN 563 (581)
Q Consensus 531 ~v~~l~~~--p~~~~~l~s~s~---Dg~I~iW~~~~~~ 563 (581)
.+..+.++ +++..++++.+. -+.+..+|+.+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 23334444 444345555543 3678888877654
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.42 Score=44.45 Aligned_cols=193 Identities=11% Similarity=0.001 Sum_probs=111.5
Q ss_pred EEEEEecCC-CeEEEEEEecCCCeEEEEeCCC--cEEEEeCCCCeeEeeccCc-cccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 351 CLHVYEKTG-VGLISCGWFLDGGGIFAGMTDK--SICLWDLDGRELESWKGQK-TLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 351 ~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
.+.++.... .-...+.|..++..+-+.+.-| .|+.+|+.+++........ ..--..++... ++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 344444333 3344566767777777777666 7999999987765433222 22233444442 33444455789999
Q ss_pred EEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccc--eeEEEeeeCCCCCcEEE
Q 008011 427 LLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRA--RFVIRSCFGGFEQAFIA 503 (581)
Q Consensus 427 i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~ 503 (581)
+||..+.+ ...+.....-..++ .|++.|+.......++++|..+- +..+.+...... +..+.=.-+ -+|...|
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~-i~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY-INGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE-ETTEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE-EcCEEEE
Confidence 99999876 44444455566666 46777777777788999998765 555555433221 111111111 1555666
Q ss_pred EEeCCCcEEEEeCCCCceEEEecc------------C---cCCEEEEEEcCCCCcEEEEE
Q 008011 504 SGSEDSQVYIWHRYTGELVLALAG------------H---SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 504 sgs~dg~I~iwd~~~~~~~~~l~~------------h---~~~v~~l~~~p~~~~~l~s~ 548 (581)
-.=....|...|..+|+....+.- + ....+.|+|+|....+++||
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 566667788889999988776531 1 35689999999886677776
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.48 Score=43.90 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=123.8
Q ss_pred EEEEeCCCC-CeEEEeeCCCc-EEEEECCCCcEEEEEecCCC--eEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 008011 321 FTVSWSPND-HQLLTCGQEEA-IRRWDVNSGECLHVYEKTGV--GLISCGWFLDGGGIFAGMTD-----KSICLWDLDGR 391 (581)
Q Consensus 321 ~~l~~sp~~-~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~~ 391 (581)
..++|+|.. .-++.+-.-|+ ..++|....+...++..... -.-.-.|+|||.+|++.-.| |.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356777744 34555555555 56888888776665543321 11234689999999886544 67999998742
Q ss_pred e-eEeeccCccccEEEEEEeeCCCEEEEEEc------------------CCeEEEEECCCCe--e-eeE---ecCCceEE
Q 008011 392 E-LESWKGQKTLRISDMAITDDGKRIISICR------------------EAAILLLDREANF--E-RWI---EEEEVITS 446 (581)
Q Consensus 392 ~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~--~-~~~---~~~~~i~~ 446 (581)
- .......+......+.+.+||+.++.+.. .-++.+.|..++. . ... .+.-.+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 2 12222334446778999999999887643 1234455544443 1 111 23345777
Q ss_pred EEECCCCCEEEEEeeCCc----EEEEEecCCCceeEEEecccc-----ceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 447 FSLSKDNKYLLVNLINQE----IHLWSIESDPKLVSRYKGHKR-----ARFVIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 447 ~~~sp~~~~l~~~~~d~~----i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
++..+||...+.+-..|. --+.-.....+++..+..... ..+.-.......++-..+|.-..+...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888776655433221 001111111122222221111 01111112212233344444455577899999
Q ss_pred CCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 518 TGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 518 ~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+|..+..-.- ..+..++-...+ ++..+.+|.+.++.-
T Consensus 311 tG~vv~~a~l--~daaGva~~~~g---f~vssg~G~~~~~s~ 347 (366)
T COG3490 311 TGAVVSEAAL--PDAAGVAAAKGG---FAVSSGQGRIIFYSR 347 (366)
T ss_pred CCcEEecccc--cccccceeccCc---eEEecCCceEEeccc
Confidence 9988754332 122334433333 555667788887743
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.69 E-value=0.64 Score=44.73 Aligned_cols=230 Identities=15% Similarity=0.133 Sum_probs=105.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE-E
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC-L 352 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~-~ 352 (581)
...+|.|..+ ..+++| ..+ +.+...+.+..+..+..-..-.+....+....++ ....++..|.|..= .+.|+. .
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCee
Confidence 3566777543 344444 444 4444445455554443211222333344433344 33333444544322 123332 2
Q ss_pred EEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008011 353 HVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.........+..+.-++|+.+++++.......-||...............+|..+.|.|++...+ ..+.|.|++-+...
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCC
Confidence 22334456788888889999888887766667888754433333333445899999999977655 44899999888333
Q ss_pred CeeeeEe-------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEe-ccccceeEEEeeeCCCCCcEEEE
Q 008011 433 NFERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYK-GHKRARFVIRSCFGGFEQAFIAS 504 (581)
Q Consensus 433 ~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s 504 (581)
....+.. ....+..++|.+++...++|+ .|.+ +...+.+ +.-++.. ...-+....+..|..+ ..-++
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~--~~gf~ 291 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNP--DKGFV 291 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEET--TEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCC-ccceECccccCCCCceEEEEEcCC--CceEE
Confidence 2222221 223378999999877777665 4433 3344444 3323322 2222222334445444 23344
Q ss_pred EeCCCcEEEE
Q 008011 505 GSEDSQVYIW 514 (581)
Q Consensus 505 gs~dg~I~iw 514 (581)
.+.+|.|--|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 4667766544
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.49 E-value=0.8 Score=50.23 Aligned_cols=195 Identities=12% Similarity=0.111 Sum_probs=113.4
Q ss_pred CCeEEEeeCCCcEEEEECCCCcEEEEEecCCCe--------EEEEEEec----------------CCCeEEEEeCCCcEE
Q 008011 329 DHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVG--------LISCGWFL----------------DGGGIFAGMTDKSIC 384 (581)
Q Consensus 329 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~sg~~dg~i~ 384 (581)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888889999999999988877543211 12233321 345888999999999
Q ss_pred EEeCCCCeeEeeccCccccE-------------EEEEEee--CCCEEEEEEc----------CCeEEEEECCCCeeeeEe
Q 008011 385 LWDLDGRELESWKGQKTLRI-------------SDMAITD--DGKRIISICR----------EAAILLLDREANFERWIE 439 (581)
Q Consensus 385 iwd~~~~~~~~~~~~~~~~v-------------~~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 439 (581)
-.|.++++..-...... .+ ..+.-.| .+..+++++. +|.|+-+|.++++..+.-
T Consensus 274 ALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99998877653322110 11 0011111 1345666643 688999999999844432
Q ss_pred cC-----------C--------ce-EEEEECCCCCEEEEEee------------------CCcEEEEEecCCCceeEEEe
Q 008011 440 EE-----------E--------VI-TSFSLSKDNKYLLVNLI------------------NQEIHLWSIESDPKLVSRYK 481 (581)
Q Consensus 440 ~~-----------~--------~i-~~~~~sp~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~~ 481 (581)
+. + .+ ..++++++...++.+.. .+.|.-.|.+++ +..-.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceEEEec
Confidence 11 0 01 23455665555555332 234555666666 5554444
Q ss_pred ccccceeE------EEeeeCC-CCCc---EEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 482 GHKRARFV------IRSCFGG-FEQA---FIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 482 ~~~~~~~~------i~~~~~~-~~~~---~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
...+..+. ....-.. .+|+ .++.++.+|.++++|.++|+.+...
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 32211111 0000001 1443 7899999999999999999988654
No 405
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.73 Score=42.96 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=113.1
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc-
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE- 350 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~- 350 (581)
.+-+..+.++.+ +...+..+.-++|.|+.+......+..+.. .+.-.++.. .|++..++..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 345556667544 566666666799999987655444433332 233444444 48898888877778888887643
Q ss_pred --EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCc--cccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 351 --CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQK--TLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 351 --~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
....+.........++.+ |++-+.+..|+-+.+.|+.......+.... ...+.++..+++..+++ ..+--+.
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v--vy~egvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV--VYDEGVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE--EcccceE
Confidence 334444444444556654 778888889999999999654332222211 11566666665544433 3445567
Q ss_pred EEECCCCe-eeeEe--cCCceEEE-EECCCCCEEEEEeeCCcEEEEEecCC
Q 008011 427 LLDREANF-ERWIE--EEEVITSF-SLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 427 i~d~~~~~-~~~~~--~~~~i~~~-~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
+.|..+.. ...+. ....+.++ .+.-.+++..+...+.-+.+-|+.+.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 77777665 22221 11222222 22334666666666777777777664
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.46 E-value=1 Score=44.39 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEE---E-eccCcCCEEEEEEcCCCCcEEEEEECCCcEE
Q 008011 498 EQAFIASGSEDSQVYIWHRYTGELVL---A-LAGHSGSVNCVSWNPANLHMLASASDDRTIR 555 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~~~~~~~---~-l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~ 555 (581)
.+.++++.-..+.|....+..+..+. . +......+.++++.||| .++++.+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-eEEEEECCCCeEe
Confidence 56677777767788888876443222 2 23345589999999999 6888877888864
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.00039 Score=72.74 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=77.8
Q ss_pred eeeccccCcEEEEEEcCCC-CEEEEEECCCeEEEEEccc-CCeee---EEEeecCCCCCeEEEEeCC---CCCeEEEeeC
Q 008011 266 QILEAHSDEVWFLQFSHDG-KYLASSSKDQSAIIWEVKE-DGQVS---LKHRLSGHRKPVFTVSWSP---NDHQLLTCGQ 337 (581)
Q Consensus 266 ~~l~~h~~~V~~l~~s~~g-~~lasgs~dg~i~iwd~~~-~~~~~---~~~~~~~h~~~V~~l~~sp---~~~~l~s~~~ 337 (581)
..++|..+.|-.++|.... ..++ -.-|...||+++- .+++. .++....-...+.-+.|.| +..++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3456778888888885421 1222 2236788998762 11111 1222233344456666766 5566777777
Q ss_pred CCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEE
Q 008011 338 EEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII 417 (581)
Q Consensus 338 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 417 (581)
+++|++.++.+... ..+..|...++.++|...|-..+.+ ++|||..++
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFA 251 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEE
Confidence 88888877665432 3444577777777766544222211 677888888
Q ss_pred EEEcCCeEEEEEC
Q 008011 418 SICREAAILLLDR 430 (581)
Q Consensus 418 ~~~~dg~i~i~d~ 430 (581)
.++.||.+++|.+
T Consensus 252 ~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 252 WAISDGSVGFYQI 264 (1283)
T ss_pred EeecCCccceeee
Confidence 8888888777753
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.38 E-value=0.91 Score=42.78 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=132.9
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECC------CC-cEEEEEec-----CCCeEEEEEEecCCC------------eEE
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVN------SG-ECLHVYEK-----TGVGLISCGWFLDGG------------GIF 375 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 375 (581)
-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999888888888899999986 12 22333332 123567777764322 367
Q ss_pred EEeCCCcEEEEeCCCC------eeEeeccCc-cccEEEEEEee--CCCEEEEE-EcCCeEEEEECCCCeeee----E---
Q 008011 376 AGMTDKSICLWDLDGR------ELESWKGQK-TLRISDMAITD--DGKRIISI-CREAAILLLDREANFERW----I--- 438 (581)
Q Consensus 376 sg~~dg~i~iwd~~~~------~~~~~~~~~-~~~v~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~----~--- 438 (581)
.++.||+|.-|...-. ......... ..-...+++.. .+.+|..+ -..++|.++|-.-..... .
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 7889999999986321 112222111 22234455543 35566555 367888888865443111 0
Q ss_pred -------------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccc--cceeEEE---eeeCCCCCc
Q 008011 439 -------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHK--RARFVIR---SCFGGFEQA 500 (581)
Q Consensus 439 -------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~i~---~~~~~~~~~ 500 (581)
...-.|+-..-.++.+.=+.+..-|.|-+||+.. ..++++.... ..-+.+. ..|....+.
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0001112222222322222333346899999877 5666663221 1122222 345566788
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEeccCcC------CEEEEEEcCC---C--CcEEEEEEC
Q 008011 501 FIASGSEDSQVYIWHRYTGELVLALAGHSG------SVNCVSWNPA---N--LHMLASASD 550 (581)
Q Consensus 501 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~------~v~~l~~~p~---~--~~~l~s~s~ 550 (581)
+|+.--.||+|..||..+++.+..+....+ .++.|+|... + ..++.+++-
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp 323 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGP 323 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCC
Confidence 888877899999999999998888776443 4567777652 1 145555553
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.38 E-value=0.19 Score=51.30 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=86.9
Q ss_pred CCCeEEEEeCCC----CCeEEEeeCCCcEEEEECC-----CCcEEEEEecC-----CCeEEEEEEecCCCeEEEEeCCCc
Q 008011 317 RKPVFTVSWSPN----DHQLLTCGQEEAIRRWDVN-----SGECLHVYEKT-----GVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 317 ~~~V~~l~~sp~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
-..|..+.|.|- ...|++.-....|.||.+. +++.+.....+ .---..|.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 345899999993 3355556677899999875 22322221111 112246889999888877666555
Q ss_pred EEEEeCC--CCeeEeeccCccccEEEEEEeeCCCEEEEEEc-CCeEEEEECCCCe------eeeEecCCceEEEEECCCC
Q 008011 383 ICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISICR-EAAILLLDREANF------ERWIEEEEVITSFSLSKDN 453 (581)
Q Consensus 383 i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~------~~~~~~~~~i~~~~~sp~~ 453 (581)
=.++++. +..++.-. ...+.|.|.+|.+||++|+++-. .=.-++||-.... ...+..++.|.++.-.-|.
T Consensus 136 SV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred eEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence 4556663 33333322 33458999999999998877643 3456889876654 3445566667666554433
Q ss_pred CEEEEEe
Q 008011 454 KYLLVNL 460 (581)
Q Consensus 454 ~~l~~~~ 460 (581)
.+++++
T Consensus 215 -qVAvaT 220 (671)
T PF15390_consen 215 -QVAVAT 220 (671)
T ss_pred -eEEEEe
Confidence 344443
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.36 E-value=0.13 Score=54.74 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=91.0
Q ss_pred CCCCEEEEEECCC------eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC-----CcEEEEECCCCc
Q 008011 282 HDGKYLASSSKDQ------SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE-----EAIRRWDVNSGE 350 (581)
Q Consensus 282 ~~g~~lasgs~dg------~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~~~~~ 350 (581)
.++..++.||.++ .+..||..++ .+.....+.........+.+ ++...+.||.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4566677776542 4677777653 33222222212222222222 57777888765 347788887765
Q ss_pred EEEEE--ecCCCeEEEEEEecCCCeEEEEeCC------CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC
Q 008011 351 CLHVY--EKTGVGLISCGWFLDGGGIFAGMTD------KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE 422 (581)
Q Consensus 351 ~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 422 (581)
-...- ....... +++ .-++...+.|+.+ ..+..||+.+.................+...++..++.|+.+
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 33211 1111111 122 2356666667632 358889987766544332221111222333456666666543
Q ss_pred --------CeEEEEECCCCeeeeEe---cCCceEEEEECCCCCEEEEEeeC-----CcEEEEEecCC
Q 008011 423 --------AAILLLDREANFERWIE---EEEVITSFSLSKDNKYLLVNLIN-----QEIHLWSIESD 473 (581)
Q Consensus 423 --------g~i~i~d~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~ 473 (581)
..+.+||..+..-.... ....-.+++. -+++.++.|+.+ +.+.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 23888998877621111 1111111111 256666666543 35666666553
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.35 E-value=1.3 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEE
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRR 343 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~v 343 (581)
-.|..+.++|+|.+++..|..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 35889999999999999988664433
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.32 E-value=0.78 Score=45.65 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=85.9
Q ss_pred cCCCCEEEEEE--CC----CeEEEEEcccCCeeeEEEeecC---CCCCeEEEEeCCCCCeEEEeeC--------------
Q 008011 281 SHDGKYLASSS--KD----QSAIIWEVKEDGQVSLKHRLSG---HRKPVFTVSWSPNDHQLLTCGQ-------------- 337 (581)
Q Consensus 281 s~~g~~lasgs--~d----g~i~iwd~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~l~s~~~-------------- 337 (581)
-|+|.+++|+- .+ |-+.+.|-++- ........ ....-....|.|..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 47888888763 22 44666665532 33333322 2233466778888888887642
Q ss_pred ------CCcEEEEECCCCcEEEEEecCCC--eEEEEEEec--CCCeEEEEe-CCCcEEEEeC-CCCe-----eEeeccC-
Q 008011 338 ------EEAIRRWDVNSGECLHVYEKTGV--GLISCGWFL--DGGGIFAGM-TDKSICLWDL-DGRE-----LESWKGQ- 399 (581)
Q Consensus 338 ------dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~sg~-~dg~i~iwd~-~~~~-----~~~~~~~- 399 (581)
..++.+||+.+.+.++++.-... ....+.|.. +..+-++|+ -..+|..|-- +.+. +..+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 24799999999999999886543 345666654 444444333 3445554433 2222 1111110
Q ss_pred -------c--------cccEEEEEEeeCCCEEEEEE-cCCeEEEEECCCCe-eee-----Ee---------------cCC
Q 008011 400 -------K--------TLRISDMAITDDGKRIISIC-REAAILLLDREANF-ERW-----IE---------------EEE 442 (581)
Q Consensus 400 -------~--------~~~v~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~-----~~---------------~~~ 442 (581)
. ..-|++|.+|.|.++|...+ ..|.|+.||+.... .+. +. ..+
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG 374 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence 0 23579999999999998776 58999999998755 111 11 112
Q ss_pred ceEEEEECCCCCEEEEEe
Q 008011 443 VITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 443 ~i~~~~~sp~~~~l~~~~ 460 (581)
...-+..|.||+.|++.+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 346788889999888765
No 413
>PHA03098 kelch-like protein; Provisional
Probab=96.30 E-value=0.14 Score=54.51 Aligned_cols=185 Identities=9% Similarity=0.050 Sum_probs=90.2
Q ss_pred CCCeEEEeeCCC------cEEEEECCCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeeE
Q 008011 328 NDHQLLTCGQEE------AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTD-----KSICLWDLDGRELE 394 (581)
Q Consensus 328 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~ 394 (581)
++..++.||.++ .+..||..+.+-...-.. ..... +++ .-++..++.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456677776543 577888877654322111 11111 222 2356677777765 35778888776554
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEEcC------CeEEEEECCCCeeeeEe-cC--CceEEEEECCCCCEEEEEeeCC--
Q 008011 395 SWKGQKTLRISDMAITDDGKRIISICRE------AAILLLDREANFERWIE-EE--EVITSFSLSKDNKYLLVNLINQ-- 463 (581)
Q Consensus 395 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~-~~--~~i~~~~~sp~~~~l~~~~~d~-- 463 (581)
.............+..-+++..+.|+.+ ..+..||..+..-.... .. ..-.++. ..++..++.|+.+.
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCCC
Confidence 4332222122222233456666766632 46888998876621111 11 1111222 23556666665432
Q ss_pred ------cEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCC-----CcEEEEeCCCC
Q 008011 464 ------EIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSED-----SQVYIWHRYTG 519 (581)
Q Consensus 464 ------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~d-----g~I~iwd~~~~ 519 (581)
.+.+||..+.. - ........+......+ ..++.+++.|+.+ +.|.+||..+.
T Consensus 451 ~~~~~~~v~~yd~~~~~-W-~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK-W-TELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCc-e-eeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 37788877641 1 1111111111111111 1255666666654 36777776654
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.29 E-value=0.36 Score=48.49 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=64.9
Q ss_pred EEEeCCCCCeEEEeeCCCcEEE---EECC-CC----cEEEEEec---C--CCeEEEEEEec-----------CCCeEEEE
Q 008011 322 TVSWSPNDHQLLTCGQEEAIRR---WDVN-SG----ECLHVYEK---T--GVGLISCGWFL-----------DGGGIFAG 377 (581)
Q Consensus 322 ~l~~sp~~~~l~s~~~dg~i~v---wd~~-~~----~~~~~~~~---~--~~~v~~~~~~~-----------~~~~l~sg 377 (581)
.++.+|++..||.+..+..+.+ |+.. .+ .......+ + ...|+++.|.| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677889999998877766554 5431 11 12222111 1 15777777654 35678999
Q ss_pred eCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCC---------CEEEEEEcCCeEEEEEC
Q 008011 378 MTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG---------KRIISICREAAILLLDR 430 (581)
Q Consensus 378 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~~~dg~i~i~d~ 430 (581)
..+|.|++|...+..+.. ...|..+|..+.+.... ..|..... +.|.+.|-
T Consensus 86 ~ssG~vrfyte~G~LL~~-Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg 145 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLS-QLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDG 145 (415)
T ss_pred ecccEEEEEeccchHHHH-HhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEec
Confidence 999999999976544333 33345588888775421 34444444 56666653
No 415
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.019 Score=62.05 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCCe---eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee
Q 008011 412 DGKRIISICREAAILLLDREANF---ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF 488 (581)
Q Consensus 412 ~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 488 (581)
.+..++.|+..|.+...|..+.- ..-....++|++++|+.+|..++.|-.+|.|.+||+..+ ++.+.+..+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCccc
Confidence 34568888888888888887753 233345688999999999999999999999999999987 77777776666544
Q ss_pred EEEeeeCCCCCcEEEEEeCCCc
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
.+-..-+..++..+.++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 4433333555667888888786
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=96.12 E-value=1.6 Score=43.13 Aligned_cols=274 Identities=8% Similarity=0.023 Sum_probs=131.9
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEccc-CCeeeEEEe-ecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVKE-DGQVSLKHR-LSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~-~~~~~~~~~-~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
...+++|.|..+.+-+|+|. +|. ||...+ +..+..... +.....++.++.|.++ ..+++ +..+.|..- -+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666676664 453 454433 333433211 1112334778888653 33443 444443221 1222
Q ss_pred cEEEEEec---CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 350 ECLHVYEK---TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 350 ~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
+.-..+.. .......+....++ .++.++..|.|..=+-.+..-..........+.++.+.+++.++ ..+..|.+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v-~~g~~G~i~ 196 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPG-TAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYV-AVSSRGNFY 196 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCC-cceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEE-EEeCCceEE
Confidence 22222110 11111222222222 23334445555433222333333333334578899999987655 445556554
Q ss_pred EE-ECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecc-ccceeEEEeeeCCCCCcEE
Q 008011 427 LL-DREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGH-KRARFVIRSCFGGFEQAFI 502 (581)
Q Consensus 427 i~-d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l 502 (581)
.- |..... .........++++.+.++++.++++. .|.+.+=..+.+ ..-.....+ ....+.+....+.+++..+
T Consensus 197 ~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 197 STWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred EEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCEE
Confidence 32 322222 22223456789999999998777654 566543223332 111111111 1011123323335566655
Q ss_pred EEEeCCCcEEEEeCCCCceEEEecc---CcCCEEEEEEcCCCCcEEEEEECCCcEEEEcC
Q 008011 503 ASGSEDSQVYIWHRYTGELVLALAG---HSGSVNCVSWNPANLHMLASASDDRTIRIWGL 559 (581)
Q Consensus 503 ~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~ 559 (581)
+ ++.+|.|.. ....|+.-..... -....+.+.|..++ .. +..+..|.|--|+-
T Consensus 275 ~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 275 A-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred E-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCC-ce-EEECCCceEEEecC
Confidence 4 556675553 3444554443322 22357788887666 34 45667888887764
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.11 E-value=1.8 Score=43.53 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=81.4
Q ss_pred CeEEEEeCCCCCeEEEee-----------CCC-cEEEEECCC--Cc--EEEEEecCCCeEEEEEEecCCCeEEEEeCCCc
Q 008011 319 PVFTVSWSPNDHQLLTCG-----------QEE-AIRRWDVNS--GE--CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKS 382 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 382 (581)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ +++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356789999998777653 223 676765432 33 223444334456788888887 555555443
Q ss_pred EEEEeCCCC-----eeE---e-eccC---ccccEEEEEEeeCCCEEEEEEcC-------------------CeEEEEECC
Q 008011 383 ICLWDLDGR-----ELE---S-WKGQ---KTLRISDMAITDDGKRIISICRE-------------------AAILLLDRE 431 (581)
Q Consensus 383 i~iwd~~~~-----~~~---~-~~~~---~~~~v~~i~~~~~~~~l~~~~~d-------------------g~i~i~d~~ 431 (581)
.++.|.+.. +.. . +... +......+++.|||...++.+.. +.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334455321 111 1 1111 12357789999999876655521 456667776
Q ss_pred CCeeeeEe-cCCceEEEEECCCCCEEEEEe
Q 008011 432 ANFERWIE-EEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 432 ~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~ 460 (581)
+....... .-.....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 66533333 233467899999998877644
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.09 E-value=2.9 Score=45.71 Aligned_cols=269 Identities=14% Similarity=0.100 Sum_probs=138.3
Q ss_pred CcEEEEEEcC-C---CCEEEEEE---CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEE--eCCC-CCeEEEeeCCCcEE
Q 008011 273 DEVWFLQFSH-D---GKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVS--WSPN-DHQLLTCGQEEAIR 342 (581)
Q Consensus 273 ~~V~~l~~s~-~---g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~--~sp~-~~~l~s~~~dg~i~ 342 (581)
++|..+..-. + +..++||+ .||+++|....-+-.......+.| -..++.+. +.++ .++|+.+-- +.-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-cceE
Confidence 4666666543 2 23566665 689999987542211122233444 44577777 4432 235554433 3445
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEec-CCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEc
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFL-DGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICR 421 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 421 (581)
+..+...-......+.......+..+. .++.|+=.. ...|++++-. +....|.... .++....+.+...++.++.
T Consensus 432 vl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 432 VLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRPPG--KITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccCCC--ceEEEEEeecceEEEEecC
Confidence 555432211111111111111222221 222222221 2346666644 3444454443 4556666666678888888
Q ss_pred CCeEEEEECCCCe---eeeEecCCceEEEEECCCC------CEEEEEeeCCcEEEEEecCCCceeEE--EeccccceeEE
Q 008011 422 EAAILLLDREANF---ERWIEEEEVITSFSLSKDN------KYLLVNLINQEIHLWSIESDPKLVSR--YKGHKRARFVI 490 (581)
Q Consensus 422 dg~i~i~d~~~~~---~~~~~~~~~i~~~~~sp~~------~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~i 490 (581)
++.+...++.... .........|.|+.++|-| +++++|..+..+.+.-.......+.. +.+..-+...+
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl 587 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSIL 587 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchhee
Confidence 8888888777655 3334456789999999842 37888888776655444332222222 23333344444
Q ss_pred EeeeCCCCCcEEEEEeCCCcEEEE--eCCCCceEEEeccC--cCCEEEEEEcCCCCcEEEEE
Q 008011 491 RSCFGGFEQAFIASGSEDSQVYIW--HRYTGELVLALAGH--SGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 491 ~~~~~~~~~~~l~sgs~dg~I~iw--d~~~~~~~~~l~~h--~~~v~~l~~~p~~~~~l~s~ 548 (581)
...+ ..+..+|.++..||.+.-| |..+|..-..-+.| ..++.=-.|+..+...++++
T Consensus 588 ~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 588 LTTF-EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred eEEe-eccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence 4444 4457899999999988655 45555432222111 33444444555443334333
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.09 E-value=0.021 Score=37.49 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCc
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGE 350 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~ 350 (581)
...|.+++|+|...+||.+..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.0056 Score=54.40 Aligned_cols=137 Identities=10% Similarity=0.001 Sum_probs=70.7
Q ss_pred EEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEE-EEEecCCCeEEE-EE
Q 008011 289 SSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL-HVYEKTGVGLIS-CG 366 (581)
Q Consensus 289 sgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~-~~ 366 (581)
.-+.||.|.-+++.... ..+ ..-..|...-.-+ .-+..+++|+.+|.|.+|+..-.... ..+......+.+ +.
T Consensus 35 ~~sa~~~v~~~~~~k~k-~s~-rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHK-ESC-RSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred cccCCcccccchhhhhh-hhh-hhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 34567777777765321 111 1111122221112 23567999999999999987621111 111111122222 22
Q ss_pred EecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc-ccEEEEEEeeCCCEEEEE--EcCCeEEEEEC
Q 008011 367 WFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIISI--CREAAILLLDR 430 (581)
Q Consensus 367 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~--~~dg~i~i~d~ 430 (581)
--.++.+..+++.||.|+.|++.-........+|. .++.....+..+..++.+ +.+..++.|++
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 22355678899999999999998777766666665 333333333333333333 33334444443
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.89 E-value=0.25 Score=49.71 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=82.6
Q ss_pred CcEEEEEEcCCCCEEEEEE-----------CCC-eEEEEEccc-CCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC
Q 008011 273 DEVWFLQFSHDGKYLASSS-----------KDQ-SAIIWEVKE-DGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg 339 (581)
.....|+|.++|+++++-. ..+ .|.+++-.+ .+.......+...-.....+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456789999999777642 223 677765432 23333333444334456889999888 444 44443
Q ss_pred cEEEEECCCC-----cEEEE---Eec----CCCeEEEEEEecCCCeEEEEeC-------------------CCcEEEEeC
Q 008011 340 AIRRWDVNSG-----ECLHV---YEK----TGVGLISCGWFLDGGGIFAGMT-------------------DKSICLWDL 388 (581)
Q Consensus 340 ~i~vwd~~~~-----~~~~~---~~~----~~~~v~~~~~~~~~~~l~sg~~-------------------dg~i~iwd~ 388 (581)
..++.|.... +.... +.. +......+.|.|||...++-+. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 21112 222 1234678999999876665442 145666677
Q ss_pred CCCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 389 DGRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 389 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
++.....+.... .....++|+++|+.+++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 766655544433 2567889999888776543
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.77 E-value=0.035 Score=36.47 Aligned_cols=31 Identities=10% Similarity=0.285 Sum_probs=28.4
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCeEEEEEcc
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~ 302 (581)
...|.+++|+|...+||.|+.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.68 E-value=2 Score=40.60 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=89.3
Q ss_pred cEEEEEEcCCCCEEEEEE---CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEE-CCCC
Q 008011 274 EVWFLQFSHDGKYLASSS---KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWD-VNSG 349 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs---~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd-~~~~ 349 (581)
.+.+.++|++|+.+|... ....+.++... ...... +.+ ..+..-.|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~--~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPV--LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceee--ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999777655 23345555443 322221 122 3678889999987777766666777774 3333
Q ss_pred cEE-EEEecC--CCeEEEEEEecCCCeEEEEe---CCCcEEEEeCC---CC---e---eEeeccCccccEEEEEEeeCCC
Q 008011 350 ECL-HVYEKT--GVGLISCGWFLDGGGIFAGM---TDKSICLWDLD---GR---E---LESWKGQKTLRISDMAITDDGK 414 (581)
Q Consensus 350 ~~~-~~~~~~--~~~v~~~~~~~~~~~l~sg~---~dg~i~iwd~~---~~---~---~~~~~~~~~~~v~~i~~~~~~~ 414 (581)
... ...... ...|..+.++|||..++... .++.|.+--+. .+ . ...........+.+++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 322 122222 12899999999999988765 34677776552 22 1 1112222234789999999998
Q ss_pred EEEEEEcCC
Q 008011 415 RIISICREA 423 (581)
Q Consensus 415 ~l~~~~~dg 423 (581)
.++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 777766544
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.59 E-value=0.73 Score=47.24 Aligned_cols=155 Identities=15% Similarity=0.240 Sum_probs=91.7
Q ss_pred cEEEEEEeeCCCEEEEEE--cCCeEEEEECCCCeeeeEecCCceEEEEECCC----CCEEEEEeeCCcEEEEEecCCC--
Q 008011 403 RISDMAITDDGKRIISIC--REAAILLLDREANFERWIEEEEVITSFSLSKD----NKYLLVNLINQEIHLWSIESDP-- 474 (581)
Q Consensus 403 ~v~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~----~~~l~~~~~d~~i~iwd~~~~~-- 474 (581)
++..++|....+.+.+.- .+|.+++=| ...++.-..|..+.|.|- ...+++.-....|.+|.+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd-----s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e 95 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD-----SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE 95 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC-----ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccc
Confidence 688888874433333321 222222211 344555667999999994 3355556668899999986321
Q ss_pred --ceeEEEecccccee--EEEeeeCCCCCcEEEEEeCCCcEEEEeCCC--CceEEEeccCcCCEEEEEEcCCCCcEEEEE
Q 008011 475 --KLVSRYKGHKRARF--VIRSCFGGFEQAFIASGSEDSQVYIWHRYT--GELVLALAGHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 475 --~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~--~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
+.......+-...+ .-.-|.|+|....|+.-.....-.++++.. ......+ ...+-|.|.+|.+||++++++.
T Consensus 96 ~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 96 RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEe
Confidence 11111111111000 112356688888887776655445555443 3333344 3468899999999997777777
Q ss_pred ECCCcEEEEcCCCcC
Q 008011 549 SDDRTIRIWGLDQIN 563 (581)
Q Consensus 549 s~Dg~I~iW~~~~~~ 563 (581)
|..=.-+|||-....
T Consensus 175 GSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 175 GSSLHSYIWDSAQKT 189 (671)
T ss_pred CCeEEEEEecCchhh
Confidence 776677899876553
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.54 E-value=1.1 Score=42.18 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=88.0
Q ss_pred CeEEEEeCCCCCeEEEee---CCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEe-CCCC--e
Q 008011 319 PVFTVSWSPNDHQLLTCG---QEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWD-LDGR--E 392 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd-~~~~--~ 392 (581)
.+...++++++..++... ....+.++.. +....... ....+..-.|.+++...++...+....++. ...+ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877766 2234555543 33222221 233677889999977666666666666663 2222 2
Q ss_pred eEeeccCccc-cEEEEEEeeCCCEEEEEEc---CCeEEEEECCC---C--e-----eee-EecCCceEEEEECCCCCEEE
Q 008011 393 LESWKGQKTL-RISDMAITDDGKRIISICR---EAAILLLDREA---N--F-----ERW-IEEEEVITSFSLSKDNKYLL 457 (581)
Q Consensus 393 ~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~---dg~i~i~d~~~---~--~-----~~~-~~~~~~i~~~~~sp~~~~l~ 457 (581)
.......... .|..+.++|||.+++.... ++.|.+--+.. + . ... ......++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222111 7999999999999887763 46777654332 2 1 111 12356789999999998877
Q ss_pred EEeeCC
Q 008011 458 VNLINQ 463 (581)
Q Consensus 458 ~~~~d~ 463 (581)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 766544
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=95.54 E-value=0.88 Score=47.59 Aligned_cols=140 Identities=9% Similarity=-0.044 Sum_probs=71.2
Q ss_pred CCCeEEEeeCCC-----cEEEEECCCCcEEEEEec--CCCeEEEEEEecCCCeEEEEeCC--CcEEEEeCCCCeeEeecc
Q 008011 328 NDHQLLTCGQEE-----AIRRWDVNSGECLHVYEK--TGVGLISCGWFLDGGGIFAGMTD--KSICLWDLDGRELESWKG 398 (581)
Q Consensus 328 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~ 398 (581)
++..+++||.++ ++..||..+++....-.. ..... +++ .-++...++|+.+ ..+..||..++.......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345566676543 467788877654332211 11111 122 2366666777754 357888887665544433
Q ss_pred CccccEEEEEEeeCCCEEEEEEcCC---eEEEEECCCCeeeeE-ec--CCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 399 QKTLRISDMAITDDGKRIISICREA---AILLLDREANFERWI-EE--EEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 399 ~~~~~v~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~-~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
............-+|+..+.|+.++ .+..||.++..-... .. ...-.+++ .-+++..+.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCC
Confidence 3222222233344677777777543 477888877652211 11 11111121 2245555555 3567788765
Q ss_pred C
Q 008011 473 D 473 (581)
Q Consensus 473 ~ 473 (581)
+
T Consensus 425 ~ 425 (480)
T PHA02790 425 N 425 (480)
T ss_pred C
Confidence 4
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=95.42 E-value=0.88 Score=47.58 Aligned_cols=146 Identities=8% Similarity=-0.065 Sum_probs=73.5
Q ss_pred CCCEEEEEECCC-----eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCC--CcEEEEECCCCcEEEEE
Q 008011 283 DGKYLASSSKDQ-----SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQE--EAIRRWDVNSGECLHVY 355 (581)
Q Consensus 283 ~g~~lasgs~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~d--g~i~vwd~~~~~~~~~~ 355 (581)
++.+++.||.++ ++..||..++ .+.....+.........+. -++...+.||.+ ..+..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 4667777653 3333333222222222222 357777777764 35788887665432211
Q ss_pred ecCCCeEEEEEEecCCCeEEEEeCCC---cEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008011 356 EKTGVGLISCGWFLDGGGIFAGMTDK---SICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
.-...........-++...+.|+.++ .+..||.++.................+..-++...+.| |.+.+||..+
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 11111111111223566667777553 47788887766554333222122222233455555555 3567888877
Q ss_pred Ce
Q 008011 433 NF 434 (581)
Q Consensus 433 ~~ 434 (581)
..
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 66
No 428
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=95.32 E-value=0.021 Score=49.57 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHhhcCCccCCH
Q 008011 62 KKSEFIKIITRALYSLGYDKSGALLEEESGIPMHSS 97 (581)
Q Consensus 62 ~~~e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~~~ 97 (581)
...|.+||++.+|+..||.+++.+|++.+++.++.+
T Consensus 164 re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE~p 199 (199)
T PF06588_consen 164 REKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLEHP 199 (199)
T ss_pred HHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCCCC
Confidence 467899999999999999999999999999999853
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.24 E-value=0.0065 Score=59.83 Aligned_cols=240 Identities=12% Similarity=0.188 Sum_probs=135.4
Q ss_pred EEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEE-EEeCCCcEEEEeCCCCeeEeeccC
Q 008011 321 FTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIF-AGMTDKSICLWDLDGRELESWKGQ 399 (581)
Q Consensus 321 ~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~ 399 (581)
....|-|.+..++.++.+..+..||- .++..... ........++|..++..++ .+-..+.+.+||+.+.........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34567787777888888888999984 34444333 2344566788888777654 456788999999976443333333
Q ss_pred ccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE-ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCcee
Q 008011 400 KTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI-EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (581)
Q Consensus 400 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 477 (581)
....-.-+.|++.+..++.+...|.+.+++..+.. .... .|...++++++.+.+..+. ++.|..+.+-...+.....
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~dcd~~L~v~~qegeta~l 194 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CDCDNTLSVTTQEGETASL 194 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cCcHHHHHHhhhccceeee
Confidence 22233337888888899999899999999988766 3333 4788899999998765444 4444444333222211111
Q ss_pred EEEeccccc--eeEEEeeeCCCCCcEEEEEeCCCcEEEE-e--CCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCC
Q 008011 478 SRYKGHKRA--RFVIRSCFGGFEQAFIASGSEDSQVYIW-H--RYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDR 552 (581)
Q Consensus 478 ~~~~~~~~~--~~~i~~~~~~~~~~~l~sgs~dg~I~iw-d--~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg 552 (581)
....+.... .+.+..-.|..-|..+.+.-.......| . -..+..-..++...+.+.|+.|--|| .|.-+-+-|
T Consensus 195 tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg--~i~igf~ag 272 (615)
T KOG2247|consen 195 TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--YILIGFDAG 272 (615)
T ss_pred eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccc--cccccccce
Confidence 111111111 0011111122223333222111110001 1 11112222555566788999998888 355555556
Q ss_pred cEEEEcCCCcCcc
Q 008011 553 TIRIWGLDQINMK 565 (581)
Q Consensus 553 ~I~iW~~~~~~~~ 565 (581)
.|..-..++.++.
T Consensus 273 ~iV~iS~h~aeLg 285 (615)
T KOG2247|consen 273 YIVSISAHNAELG 285 (615)
T ss_pred eEEEEeccchHHH
Confidence 6666666666654
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=3.3 Score=41.16 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=76.5
Q ss_pred CCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEE----EEEecCCCeEEEEEE
Q 008011 292 KDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECL----HVYEKTGVGLISCGW 367 (581)
Q Consensus 292 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~ 367 (581)
..|.+.=|-+...+.-.+...-....++|.++.||+|.+.||+--.+++|.+++....+.. ++.+.....|...+|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 3444666666543322233333445679999999999999999999999999997433222 222344556889999
Q ss_pred ecCCCeEEEEeCCCcEEEEeCC--CCeeEeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 368 FLDGGGIFAGMTDKSICLWDLD--GRELESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
..+ .-++.....| +-+|-.. .+.+. ....+...|+-..|.++.+.+..++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslR-lVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLR-LVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhh-hhhhcccCccEEEEccccceEeeec
Confidence 865 4444444433 4455442 22222 2233344677788888877655443
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.01 E-value=6.1 Score=43.60 Aligned_cols=196 Identities=10% Similarity=0.032 Sum_probs=105.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeEeeccCccc--------cEEEEEEe----------------eCCCEEEEEEcCCeEE
Q 008011 371 GGGIFAGMTDKSICLWDLDGRELESWKGQKTL--------RISDMAIT----------------DDGKRIISICREAAIL 426 (581)
Q Consensus 371 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~i~~~----------------~~~~~l~~~~~dg~i~ 426 (581)
+..++.++.++.|.-.|..+++..-....... ....+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44666667777777777766554322211110 01122221 1345788899999999
Q ss_pred EEECCCCeeee-EecCCceE-------------EEEECC--CCCEEEEEee----------CCcEEEEEecCCCceeEEE
Q 008011 427 LLDREANFERW-IEEEEVIT-------------SFSLSK--DNKYLLVNLI----------NQEIHLWSIESDPKLVSRY 480 (581)
Q Consensus 427 i~d~~~~~~~~-~~~~~~i~-------------~~~~sp--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~ 480 (581)
-.|.++++... +..++.+. .+.-.| .+..+++++. +|.|+-+|..++ +.+-.+
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-ALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-cEeeEE
Confidence 99999988432 22222221 112222 2345666643 578999999998 555444
Q ss_pred ecc-c--------cceeE------EEeeeCCCCCcEEEEEe------------------CCCcEEEEeCCCCceEEEecc
Q 008011 481 KGH-K--------RARFV------IRSCFGGFEQAFIASGS------------------EDSQVYIWHRYTGELVLALAG 527 (581)
Q Consensus 481 ~~~-~--------~~~~~------i~~~~~~~~~~~l~sgs------------------~dg~I~iwd~~~~~~~~~l~~ 527 (581)
... . +..+. .......+...+++.+. ..+.|.-.|.++|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 321 0 00000 00011122222332211 235677778889988877664
Q ss_pred CcCCEE---------EEEEcC-CC--CcEEEEEECCCcEEEEcCCCcCcccc
Q 008011 528 HSGSVN---------CVSWNP-AN--LHMLASASDDRTIRIWGLDQINMKHR 567 (581)
Q Consensus 528 h~~~v~---------~l~~~p-~~--~~~l~s~s~Dg~I~iW~~~~~~~~~~ 567 (581)
....+. =+.+.. +| ...++.++.+|.+.+.|-++++....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 211111 112222 34 12788999999999999999998754
No 432
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.86 E-value=2.9 Score=37.81 Aligned_cols=213 Identities=14% Similarity=0.166 Sum_probs=110.3
Q ss_pred EEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC---CeEEEeeCCCcEEEEECC--CCcEEEEEe----
Q 008011 286 YLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND---HQLLTCGQEEAIRRWDVN--SGECLHVYE---- 356 (581)
Q Consensus 286 ~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~l~s~~~dg~i~vwd~~--~~~~~~~~~---- 356 (581)
++..-=..|.|.-||+..+.-. ...+.+. ++.++.+--.+ .+.+.++..-.|--||.. ......++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~--ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVY--RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred EEEEEeccCceehhhhhhhheE--EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4444445566777988754221 1222222 12233332122 233333433334556632 222223211
Q ss_pred -cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCcc--------ccEEEEEEeeCCCEEEEE-EcCCeEE
Q 008011 357 -KTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKT--------LRISDMAITDDGKRIISI-CREAAIL 426 (581)
Q Consensus 357 -~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~l~~~-~~dg~i~ 426 (581)
........-..+|+|++ +.|.....=-.+....+.+..+...|. .--+.++|+.+.+.+... +.+-.|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 11334455566788887 444321111122222333433333332 123568888888776655 4566776
Q ss_pred EEE--CCCCe----eeeEe-------cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEee
Q 008011 427 LLD--REANF----ERWIE-------EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSC 493 (581)
Q Consensus 427 i~d--~~~~~----~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 493 (581)
-|| ..++. ...+. .....-.+++..+|++.+++-..++|.-.|..++ +.+..+.-.... ...+|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~q--itscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQ--ITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCc--eEEEE
Confidence 777 44443 11111 1112345566778899999999999999999998 777777766544 34577
Q ss_pred eCCCCCcEEEEEe
Q 008011 494 FGGFEQAFIASGS 506 (581)
Q Consensus 494 ~~~~~~~~l~sgs 506 (581)
|..++-..+++..
T Consensus 261 FgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 261 FGGKNLDILYVTT 273 (310)
T ss_pred ecCCCccEEEEEe
Confidence 7777655555443
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=0.24 Score=54.27 Aligned_cols=146 Identities=8% Similarity=0.020 Sum_probs=91.6
Q ss_pred cEEEEEEcCCCCEEEEE--ECCCeEEEEEcccCCee--------eEEEeecCCCCCeEEEEeCCCC-CeEEEeeCCCcEE
Q 008011 274 EVWFLQFSHDGKYLASS--SKDQSAIIWEVKEDGQV--------SLKHRLSGHRKPVFTVSWSPND-HQLLTCGQEEAIR 342 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasg--s~dg~i~iwd~~~~~~~--------~~~~~~~~h~~~V~~l~~sp~~-~~l~s~~~dg~i~ 342 (581)
.|..+...+|+...++. +.+-.|..||+.+-... ....+......-..++.|+|.- ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55566667777654443 33447888998642111 0111122223346788899853 3466777889998
Q ss_pred EEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeec---cCccccEEEEEEeeCCCEEEEE
Q 008011 343 RWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWK---GQKTLRISDMAITDDGKRIISI 419 (581)
Q Consensus 343 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~ 419 (581)
|..+........--......++++|+|.|+.+++|-..|++.-|.........+. .....+|.+++|.....++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 8876533222111233557899999999999999999999999987543222222 1224589999999877766654
No 434
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=3.7 Score=38.51 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=94.5
Q ss_pred CCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCe---eE
Q 008011 318 KPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRE---LE 394 (581)
Q Consensus 318 ~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~ 394 (581)
+-+..+.++ +++...+..+.-++|.|+.+......+..-...-..-.|.-.|++..++..|.-+.+.|+.... +.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 445667776 5577788888889999998765443332221111223344468899998877778888885432 33
Q ss_pred eeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE---ecCCceEEEEECCCCCEEEEEeeCCcEEEEEe
Q 008011 395 SWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF-ERWI---EEEEVITSFSLSKDNKYLLVNLINQEIHLWSI 470 (581)
Q Consensus 395 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 470 (581)
............++++ |++-..++.|+-+.+.|+.... ..+. .....+.++..+++..+++.. +.-+.+-|.
T Consensus 165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~ 240 (370)
T COG5276 165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDV 240 (370)
T ss_pred eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEec
Confidence 2233333334556665 6778888899999999998876 3333 334467888888877666654 334555555
Q ss_pred cCC
Q 008011 471 ESD 473 (581)
Q Consensus 471 ~~~ 473 (581)
.+.
T Consensus 241 s~~ 243 (370)
T COG5276 241 SGP 243 (370)
T ss_pred CCC
Confidence 543
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.63 E-value=0.0043 Score=61.03 Aligned_cols=148 Identities=11% Similarity=0.141 Sum_probs=108.0
Q ss_pred EEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEE-EeeCCcEEEEEecCCCceeEEEec
Q 008011 404 ISDMAITDDGKRIISICREAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLV-NLINQEIHLWSIESDPKLVSRYKG 482 (581)
Q Consensus 404 v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~ 482 (581)
.....|.+.+..++.++.+..+..||-...........+....++|+.++..+++ +-..+.+.+||+.+.....-.+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3345677777779999999999999987766555566666778888888776554 455789999999874222112222
Q ss_pred cccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEE
Q 008011 483 HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIW 557 (581)
Q Consensus 483 ~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW 557 (581)
.. ......|++....++.|...|.+.|++-.+.+.+.....|...+++++|.+.+ +.+.++.|..+.+-
T Consensus 117 ~~----s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 117 TS----SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNTLSVT 185 (615)
T ss_pred cc----hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHHHHHh
Confidence 21 12235568888889999999999999988877777776699999999999987 67777777655443
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.52 E-value=2.1 Score=45.41 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=70.0
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEe-cCCCeEEEEEEe--cCCCeEEEEeCCCcEEEEeCC------
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYE-KTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLD------ 389 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iwd~~------ 389 (581)
...-+.-+.-++.-++-+....+.|||...+.....-. .....|.++.|. |+++.+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444444444443444579999998887544332 346789999986 588999999999999998641
Q ss_pred -CC---ee--EeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008011 390 -GR---EL--ESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 390 -~~---~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
+. .+ .........+|.+..|.++|..++.+ ++.+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 00 11 11222333578899999998766554 456677664
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.37 Score=52.90 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=90.7
Q ss_pred CeEEEEeCCCCCeEEEe--eCCCcEEEEECCCCcEE-----EEEe------cCCCeEEEEEEecCC-CeEEEEeCCCcEE
Q 008011 319 PVFTVSWSPNDHQLLTC--GQEEAIRRWDVNSGECL-----HVYE------KTGVGLISCGWFLDG-GGIFAGMTDKSIC 384 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~-~~l~sg~~dg~i~ 384 (581)
+|..+...+|+...++. +.+-.|.+||+++-..- .-+. ....-..++.|.|.- ...++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676554433 33447889998753211 1111 122345677888743 2456677888888
Q ss_pred EEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeE-----ecCCceEEEEECCCCCEEEEE
Q 008011 385 LWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWI-----EEEEVITSFSLSKDNKYLLVN 459 (581)
Q Consensus 385 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~ 459 (581)
+..+................++++|+|.|+.+++|-..|++.-|...-.....+ .....|.+++|-....++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 887753322222233344789999999999999999999999988765542211 225779999998877777664
Q ss_pred e
Q 008011 460 L 460 (581)
Q Consensus 460 ~ 460 (581)
+
T Consensus 262 ~ 262 (1405)
T KOG3630|consen 262 G 262 (1405)
T ss_pred c
Confidence 3
No 438
>PLN02153 epithiospecifier protein
Probab=94.47 E-value=5.7 Score=39.44 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=36.3
Q ss_pred CCCeEEEEeCC-----CcEEEEeCCCCeeEeeccC-----ccccEEEEEEeeCCCEEEEEEcC-----------CeEEEE
Q 008011 370 DGGGIFAGMTD-----KSICLWDLDGRELESWKGQ-----KTLRISDMAITDDGKRIISICRE-----------AAILLL 428 (581)
Q Consensus 370 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d-----------g~i~i~ 428 (581)
++..++.|+.+ ..+.+||+.+.+....... ........+..-+++.++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45566666653 3578889887655443221 11122222333456666666643 257788
Q ss_pred ECCCCe
Q 008011 429 DREANF 434 (581)
Q Consensus 429 d~~~~~ 434 (581)
|..+..
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 988776
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=4.8 Score=42.74 Aligned_cols=173 Identities=12% Similarity=0.224 Sum_probs=90.2
Q ss_pred CCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEE----ecCCCeEEEEEEe
Q 008011 293 DQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVY----EKTGVGLISCGWF 368 (581)
Q Consensus 293 dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~ 368 (581)
--.|+|++.... ....+.-....+-.+.|+.+. .|++...+|++.||++.. +.+... ......|..+.++
T Consensus 63 ~~~I~If~~sG~----lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 63 RPYIRIFNISGQ----LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred ceeEEEEecccc----chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEe
Confidence 345888887521 222222233378899999654 566778999999999853 322221 2223456666666
Q ss_pred cCCCeEEEEeCCCcEEEEe-CCCCeeEeeccCccccE--EEEEEeeCCC---EEEEEEcCCeEEEEECCC--Ce-eeeEe
Q 008011 369 LDGGGIFAGMTDKSICLWD-LDGRELESWKGQKTLRI--SDMAITDDGK---RIISICREAAILLLDREA--NF-ERWIE 439 (581)
Q Consensus 369 ~~~~~l~sg~~dg~i~iwd-~~~~~~~~~~~~~~~~v--~~i~~~~~~~---~l~~~~~dg~i~i~d~~~--~~-~~~~~ 439 (581)
.+| +++-..+|.+.+-+ ................. +|-...+++. .++-....--..++-... .. ..+..
T Consensus 137 ~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 137 HNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred cCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 544 44444555555443 22222222222111112 2222222221 111111000001111111 11 22222
Q ss_pred cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008011 440 EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 440 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
....+..+.+||+.++|+.-+..|.|.+-+.+..
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 3467888999999999999999999999888765
No 440
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.15 E-value=4.8 Score=37.39 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=148.0
Q ss_pred eEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc-
Q 008011 320 VFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG- 398 (581)
Q Consensus 320 V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~- 398 (581)
-..++-.|||..-+++...+.|--.|..+|+....--+....-..+..-||+..-++-+.. .|.-.|-++.+...+..
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 3567778899888888888888888988988766655555556667777888766654433 45555666655555442
Q ss_pred --CccccEEEEEEeeCCCEEEEEEc---------CCeEEEEECCCCeeeeEecCCceEEEEECCCCCEEEEEeeCCcEEE
Q 008011 399 --QKTLRISDMAITDDGKRIISICR---------EAAILLLDREANFERWIEEEEVITSFSLSKDNKYLLVNLINQEIHL 467 (581)
Q Consensus 399 --~~~~~v~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i 467 (581)
+.........|.+.|+.-.++.. .+.|++|+.. .......++..|||..-++.-.++.|-.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEeccccceEE
Confidence 23346778889999987777653 1234444432 3345678889999998888777777877
Q ss_pred EEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCce-EEEeccCcCCEEEEEEcCCCCcEEE
Q 008011 468 WSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGEL-VLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 468 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
.|..+... ..+..........+-++.++.+..-++....+.++.||-.+..- ...+.+....-.++.....+ .+..
T Consensus 215 idp~~~~a--ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~ 291 (353)
T COG4257 215 IDPFAGHA--EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWL 291 (353)
T ss_pred cccccCCc--ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEe
Confidence 77665421 22222222112233444477788778877788888888654432 23455555556667666666 4555
Q ss_pred EEECCCcEEEEcCCCcCc
Q 008011 547 SASDDRTIRIWGLDQINM 564 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~ 564 (581)
+--.-|.|.-+|.++...
T Consensus 292 sea~agai~rfdpeta~f 309 (353)
T COG4257 292 SEADAGAIGRFDPETARF 309 (353)
T ss_pred eccccCceeecCcccceE
Confidence 444556676677665543
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.10 E-value=5.5 Score=37.79 Aligned_cols=211 Identities=10% Similarity=0.122 Sum_probs=120.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccC----CeeeEEEeecC-----CCCCeEEEEeCCCCC------------eE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKED----GQVSLKHRLSG-----HRKPVFTVSWSPNDH------------QL 332 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~~~~-----h~~~V~~l~~sp~~~------------~l 332 (581)
.-|.|+|+|.+.+-++....+...+||.... ....+...+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4578999999998888888899999998611 11122233331 234577788875332 36
Q ss_pred EEeeCCCcEEEEECCCCcE-----EEEEecC-CCe-EEEEEEec--CCCeEEEEe-CCCcEEEEeCCCCeeEe---eccC
Q 008011 333 LTCGQEEAIRRWDVNSGEC-----LHVYEKT-GVG-LISCGWFL--DGGGIFAGM-TDKSICLWDLDGRELES---WKGQ 399 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~~~-----~~~~~~~-~~~-v~~~~~~~--~~~~l~sg~-~dg~i~iwd~~~~~~~~---~~~~ 399 (581)
+.+++||+|.-|...-+.. ...+... ... ...+++-. .+.+|+.+. ..++|.+||-.-..+.. +...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998533222 1222211 122 23444443 345565554 46789988864332211 0000
Q ss_pred ----c--cccE---------EEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEecCCc---eEEEEECC------CCCE
Q 008011 400 ----K--TLRI---------SDMAITDDGKRIISICREAAILLLDREANFERWIEEEEV---ITSFSLSK------DNKY 455 (581)
Q Consensus 400 ----~--~~~v---------~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---i~~~~~sp------~~~~ 455 (581)
. ...| +-..-.++.+.=+.+..-|.|-+||......+.+..... ...++..| .+.+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0011 111112222222333345789999998887655544433 44566654 5677
Q ss_pred EEEEeeCCcEEEEEecCCCceeEEEecccc
Q 008011 456 LLVNLINQEIHLWSIESDPKLVSRYKGHKR 485 (581)
Q Consensus 456 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 485 (581)
|+-...||+|..||..++ ..+-.+.....
T Consensus 264 LVGNFGDG~InaFD~~sG-~~~g~L~~~~G 292 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG-AQLGQLLDPDN 292 (336)
T ss_pred EEeecCCceeEEecCCCC-ceeeeecCCCC
Confidence 777777999999999877 55555554443
No 442
>PLN02153 epithiospecifier protein
Probab=94.04 E-value=7 Score=38.81 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=72.5
Q ss_pred CCCEEEEEECC-------CeEEEEEcccCCeeeEEEeecCCCC----CeEEEEeCCCCCeEEEeeCC-----CcEEEEEC
Q 008011 283 DGKYLASSSKD-------QSAIIWEVKEDGQVSLKHRLSGHRK----PVFTVSWSPNDHQLLTCGQE-----EAIRRWDV 346 (581)
Q Consensus 283 ~g~~lasgs~d-------g~i~iwd~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~l~s~~~d-----g~i~vwd~ 346 (581)
++++++.|+.+ ..+.+||..+. .+........... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH-TWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC-EEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 24778887653 3433222111110 1222222 46677777754 25788898
Q ss_pred CCCcEEEE--Eec---CCCeEEEEEEecCCCeEEEEeCC-----------CcEEEEeCCCCeeEeeccCc---cccEEEE
Q 008011 347 NSGECLHV--YEK---TGVGLISCGWFLDGGGIFAGMTD-----------KSICLWDLDGRELESWKGQK---TLRISDM 407 (581)
Q Consensus 347 ~~~~~~~~--~~~---~~~~v~~~~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~---~~~v~~i 407 (581)
.+.+-... +.. ........+..-+++.++.|+.+ ..+.+||..+..-....... ..+....
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 77643321 100 11111112222355666666653 24778898876654433211 1111111
Q ss_pred EEeeCCCEEEEEEc-------------CCeEEEEECCCCe
Q 008011 408 AITDDGKRIISICR-------------EAAILLLDREANF 434 (581)
Q Consensus 408 ~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 434 (581)
+..-+++.++.++. ...+.+||..+..
T Consensus 189 ~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 189 FAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 12235565555542 2468889988876
No 443
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.99 E-value=5.4 Score=37.32 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=109.2
Q ss_pred cEEEEEEcCCCCEEEEEECCC--eEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQ--SAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
-...+.|..+|.++-+.+.-| .|+.+|+.++... ....+.. .----.++.. +++...-.-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 344677878888888888766 6888998876432 2222222 1111223333 234444455688999999999998
Q ss_pred EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc-----CccccEEEEEEeeCCCEEEEEEcCCeEE
Q 008011 352 LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG-----QKTLRISDMAITDDGKRIISICREAAIL 426 (581)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 426 (581)
+.++.-.. .=+.++ .|+..|+.......++++|..+.+...... ..-..++.+.+. +|...+-.-....|.
T Consensus 123 ~~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 88886543 445666 478888888888899999987644332221 112245666665 666666666777888
Q ss_pred EEECCCCee-eeE----------------ecCCceEEEEECCCCCEEEEEe
Q 008011 427 LLDREANFE-RWI----------------EEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 427 i~d~~~~~~-~~~----------------~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
..|..++.. ... ....-.+.++++|....|++.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 889888872 221 1134588999999877777665
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=7.5 Score=41.40 Aligned_cols=196 Identities=14% Similarity=0.199 Sum_probs=99.1
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeecc---CccccEEEEEEeeCCCE
Q 008011 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKG---QKTLRISDMAITDDGKR 415 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~ 415 (581)
-.|+|+++ +|..+..+.-....+..+.|+.+ ..|++...+|++.+|++-+........ .....|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 45888885 46666665555558889999855 567778899999999996654443211 112245555555555
Q ss_pred EEEEEcCCeEEEEE-CCCCeeeeE-e-cCCce--EEEEECCCC---CEEEEEeeCCcEEEEEecCCCceeEEEeccccce
Q 008011 416 IISICREAAILLLD-REANFERWI-E-EEEVI--TSFSLSKDN---KYLLVNLINQEIHLWSIESDPKLVSRYKGHKRAR 487 (581)
Q Consensus 416 l~~~~~dg~i~i~d-~~~~~~~~~-~-~~~~i--~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 487 (581)
+++-..+|.+.+.. ......... . ..... .|-...+++ ..++-....-...++...........+... .
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~---~ 216 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP---N 216 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC---C
Confidence 44444555555443 222221111 1 00111 222222221 111111100001112221111111111111 1
Q ss_pred eEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-cCCEEEEEEcCCC
Q 008011 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-SGSVNCVSWNPAN 541 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~v~~l~~~p~~ 541 (581)
..+.-+..+|+.++|+--..+|.|.+-++...+.+..+... ..+-..++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 12223334889999999999999999988877777666521 1222366666544
No 445
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.68 E-value=7.8 Score=38.12 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=56.4
Q ss_pred CCCeEEEeeCCC-----cEEEEECCCCcEE---EEEecCCCeE--EEEEEecCCCeEEEEeC-----CCcEEEEeCCCCe
Q 008011 328 NDHQLLTCGQEE-----AIRRWDVNSGECL---HVYEKTGVGL--ISCGWFLDGGGIFAGMT-----DKSICLWDLDGRE 392 (581)
Q Consensus 328 ~~~~l~s~~~dg-----~i~vwd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~sg~~-----dg~i~iwd~~~~~ 392 (581)
++.+++.|+.++ .+..+|+.+.+.. ..+..-..+. .+++. -++...+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456677777643 4667777665531 2221111111 12222 25556666664 2368888988766
Q ss_pred eEeeccCc-cccEEEEEEeeCCCEEEEEEcCC----eEEEEECCCCe
Q 008011 393 LESWKGQK-TLRISDMAITDDGKRIISICREA----AILLLDREANF 434 (581)
Q Consensus 393 ~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 434 (581)
........ ..+....+..-+++..+.|+.++ .+..||..+..
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 55443221 11223333445667777777653 35688888776
No 446
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.53 E-value=2.3 Score=45.11 Aligned_cols=112 Identities=13% Similarity=0.264 Sum_probs=72.8
Q ss_pred CcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeC--CCCCeEEEeeCCCcEEEEECC---
Q 008011 273 DEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWS--PNDHQLLTCGQEEAIRRWDVN--- 347 (581)
Q Consensus 273 ~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~l~s~~~dg~i~vwd~~--- 347 (581)
.....+.-|.-++.-++-+....+.|||...+ .+.....+ ...+.|.++.|. |+++.+++.|....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 34445555555554444444567999999854 34444444 456789999996 588999999999999998531
Q ss_pred --C----CcEEEEE--ecC-CCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 348 --S----GECLHVY--EKT-GVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 348 --~----~~~~~~~--~~~-~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
. -..++.+ ..+ ..+|.+..|.++|..++.+ ++.+.++|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1223332 223 3678899999988655544 356777764
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=1.5 Score=43.56 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=63.9
Q ss_pred ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEecccccee-EEEeeeCCCCCcEEEEEeCCCcEEEEeCC
Q 008011 439 EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARF-VIRSCFGGFEQAFIASGSEDSQVYIWHRY 517 (581)
Q Consensus 439 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~sgs~dg~I~iwd~~ 517 (581)
...++|.++.||+|.+.+++--.+.+|.+++.........-...++.... ...++| +.+ .-+|..+..| +-+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W-~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW-TSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE-ecC-eeEEEEecCC-eEEEEEc
Confidence 34568999999999999999999999999998543222211122222222 233333 433 4455555544 5555543
Q ss_pred C-CceEEEeccCcCCEEEEEEcCCCC
Q 008011 518 T-GELVLALAGHSGSVNCVSWNPANL 542 (581)
Q Consensus 518 ~-~~~~~~l~~h~~~v~~l~~~p~~~ 542 (581)
. .+.++..+.|+-.|+-..|.++..
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccc
Confidence 3 234555667888899999999874
No 448
>PLN02193 nitrile-specifier protein
Probab=93.20 E-value=8.2 Score=40.28 Aligned_cols=189 Identities=12% Similarity=0.013 Sum_probs=91.6
Q ss_pred CCCeEEEeeCC-------CcEEEEECCCCcEEEEEec--CCC--eEEEEEEecCCCeEEEEeCC-----CcEEEEeCCCC
Q 008011 328 NDHQLLTCGQE-------EAIRRWDVNSGECLHVYEK--TGV--GLISCGWFLDGGGIFAGMTD-----KSICLWDLDGR 391 (581)
Q Consensus 328 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~--~~~--~v~~~~~~~~~~~l~sg~~d-----g~i~iwd~~~~ 391 (581)
++.+++.|+.+ ..+.+||+.+.+-...-.. ... ........-++...+.|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 35566666643 2477888877543321100 000 01111122245566666654 35888998876
Q ss_pred eeEeeccC---ccccEEEEEEeeCCCEEEEEEcC-----CeEEEEECCCCeeeeEecC------CceEEEEECCCCCEEE
Q 008011 392 ELESWKGQ---KTLRISDMAITDDGKRIISICRE-----AAILLLDREANFERWIEEE------EVITSFSLSKDNKYLL 457 (581)
Q Consensus 392 ~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~------~~i~~~~~sp~~~~l~ 457 (581)
+....... ...+-...+..-+++..+.|+.+ ..+..||+.+..-...... ..-..++. -+++.++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyv 333 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWV 333 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEE
Confidence 65544322 11111122222355666666644 3467888877662211110 00111222 2566777
Q ss_pred EEeeC----CcEEEEEecCCCceeEEEecc---ccceeEEEeeeCCCCCcEEEEEeCC--------------CcEEEEeC
Q 008011 458 VNLIN----QEIHLWSIESDPKLVSRYKGH---KRARFVIRSCFGGFEQAFIASGSED--------------SQVYIWHR 516 (581)
Q Consensus 458 ~~~~d----~~i~iwd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~sgs~d--------------g~I~iwd~ 516 (581)
.++.+ ..+.+||+.+. .- ..+... ........++ ..++++++.|+.+ +.+.+||.
T Consensus 334 iGG~~g~~~~dv~~yD~~t~-~W-~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQD-KW-TQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EECCCCCccCceEEEECCCC-EE-EEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 76654 46889998775 22 222111 1111111122 2356677777753 24788888
Q ss_pred CCCce
Q 008011 517 YTGEL 521 (581)
Q Consensus 517 ~~~~~ 521 (581)
.+.+-
T Consensus 410 ~t~~W 414 (470)
T PLN02193 410 ETLQW 414 (470)
T ss_pred CcCEE
Confidence 76643
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.12 E-value=0.95 Score=45.44 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=81.0
Q ss_pred EEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCC-------EEEEEeeCCcEEEEEecCCCceeEEEeccc-ccee
Q 008011 419 ICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNK-------YLLVNLINQEIHLWSIESDPKLVSRYKGHK-RARF 488 (581)
Q Consensus 419 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~ 488 (581)
+.....++-.|+..+. ..+..+.. + -+.|.|+.+ .-++|-++..|.-.|.+-....+....... ....
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn 563 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKN 563 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccc
Confidence 4445567777777776 33333333 3 566666432 234566677776667655432222211110 0011
Q ss_pred EEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCC
Q 008011 489 VIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLASASDDRTIRIWGLD 560 (581)
Q Consensus 489 ~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~ 560 (581)
...+.. ....-+||++|..|.|++||.-.-+....+++-...|..+..+.+|..+|+||- ..+.+-|+.
T Consensus 564 ~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 564 KFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred cccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 111111 335568999999999999996554555567777889999999999976667663 356665553
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.85 E-value=10 Score=37.21 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCeEEEEeCCC-----cEEEEeCCCCee----EeeccCccccEEEEEEeeCCCEEEEEEc-----CCeEEEEECCCCe-
Q 008011 370 DGGGIFAGMTDK-----SICLWDLDGREL----ESWKGQKTLRISDMAITDDGKRIISICR-----EAAILLLDREANF- 434 (581)
Q Consensus 370 ~~~~l~sg~~dg-----~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~- 434 (581)
++..++.|+.++ .+..+|+.+... ..........-...+..-+++..+.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 455666676543 566777765543 1111111111111222235666666664 2468889988776
Q ss_pred eeeEe--cCCceEEEEECCCCCEEEEEeeCC----cEEEEEecCC
Q 008011 435 ERWIE--EEEVITSFSLSKDNKYLLVNLINQ----EIHLWSIESD 473 (581)
Q Consensus 435 ~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~ 473 (581)
..... ........+...++++.+.|+.++ .+..||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 22211 111222222334567777777653 3567887764
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.83 E-value=5.8 Score=42.66 Aligned_cols=145 Identities=8% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCEEEEEECCCeEEEEEcccCCeeeE---EEee----------------cCCCCCeEEEEeCC--CCCeEEEeeCCCcEE
Q 008011 284 GKYLASSSKDQSAIIWEVKEDGQVSL---KHRL----------------SGHRKPVFTVSWSP--NDHQLLTCGQEEAIR 342 (581)
Q Consensus 284 g~~lasgs~dg~i~iwd~~~~~~~~~---~~~~----------------~~h~~~V~~l~~sp--~~~~l~s~~~dg~i~ 342 (581)
..+++++. .+.|.||+.+.-..... ...+ ......|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 67899999863222110 0000 00223355555443 456899999999999
Q ss_pred EEECCC-------C----c---------EEEEEecCCCeEEEEEEe--cCCCeEEEEeCCCcEEEEeCCCC--e-eEeec
Q 008011 343 RWDVNS-------G----E---------CLHVYEKTGVGLISCGWF--LDGGGIFAGMTDKSICLWDLDGR--E-LESWK 397 (581)
Q Consensus 343 vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iwd~~~~--~-~~~~~ 397 (581)
+|.+++ . + +...+ .-...+++++++ ...+.||+++....|.||-.... . .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997531 0 0 11111 224578899998 77788888888888888765321 1 11111
Q ss_pred cCccccEEEEEEeeCC---C---EEEEEEcCCeEEEEEC
Q 008011 398 GQKTLRISDMAITDDG---K---RIISICREAAILLLDR 430 (581)
Q Consensus 398 ~~~~~~v~~i~~~~~~---~---~l~~~~~dg~i~i~d~ 430 (581)
..+...|.+|+|.++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1244578899998754 2 7888899999998887
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=6.9 Score=34.86 Aligned_cols=174 Identities=12% Similarity=0.031 Sum_probs=87.1
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEE-EEEcCCeEEEEECCCCe-eeeEecCCceE
Q 008011 370 DGGGIFAGMT--DKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRII-SICREAAILLLDREANF-ERWIEEEEVIT 445 (581)
Q Consensus 370 ~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~i~ 445 (581)
++..+.+.+. ...|++||+.+++...........+..=-+..-+..+. ..-.+|.-..+|.++-+ ......++.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 4545555544 34799999987665433322211121111112233333 33467777888887755 33333334444
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCC---ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIESDP---KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
.++. |+..|+.+.....++.-|..+-. ....++.+.. +..+.-.- --+|.+.|-.-.+..|...|..+|+.+
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE-~VdG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELE-WVDGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--ccccccee-eeccEEEEeeeeecceEEEcCCCCcEE
Confidence 4443 44456555545556655554431 1111111111 11111111 114455555555555666667777766
Q ss_pred EEec------------cCcCCEEEEEEcCCCCcEEEEE
Q 008011 523 LALA------------GHSGSVNCVSWNPANLHMLASA 548 (581)
Q Consensus 523 ~~l~------------~h~~~v~~l~~~p~~~~~l~s~ 548 (581)
..+. .|....+.+++.|++.++++||
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 5442 3456788999999886677776
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.70 E-value=7.8 Score=39.28 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=91.4
Q ss_pred CCCeEEE-eeCCCcEEEEECCCCcEEEEEecCCCeEEEEEEecCC-------CeEEEEeCCCcEEEEeCC--CCeeEeec
Q 008011 328 NDHQLLT-CGQEEAIRRWDVNSGECLHVYEKTGVGLISCGWFLDG-------GGIFAGMTDKSICLWDLD--GRELESWK 397 (581)
Q Consensus 328 ~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~sg~~dg~i~iwd~~--~~~~~~~~ 397 (581)
+.++|+. ++....+.-.|++.|+.+.....+... -+.|.|+. ..-++|-.+..|.-.|.+ +.++....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4445443 444556777899999999988887654 46677643 234556667777766764 32222111
Q ss_pred --c-CccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEec
Q 008011 398 --G-QKTLRISDMAITDDGKRIISICREAAILLLDREANF--ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIE 471 (581)
Q Consensus 398 --~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 471 (581)
. ......++..-.. ..++++++..|.|++||.-... .........|..+..+.+|+++++.+ ...+.+.|++
T Consensus 556 sKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 1 1111233333333 3489999999999999976554 44456677899999999999998877 5567777764
No 454
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.68 E-value=12 Score=37.31 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=27.5
Q ss_pred CCCeEEEEeCC-----------CcEEEEeCCCCeeEeeccCccccEEE-EEE-eeCCCEEEEEEcC
Q 008011 370 DGGGIFAGMTD-----------KSICLWDLDGRELESWKGQKTLRISD-MAI-TDDGKRIISICRE 422 (581)
Q Consensus 370 ~~~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~-i~~-~~~~~~l~~~~~d 422 (581)
++...+.|+.+ ..+..||..+................ .+. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666677653 24777888776654443111111111 122 3467777777653
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.56 E-value=5.3 Score=43.61 Aligned_cols=99 Identities=9% Similarity=0.018 Sum_probs=51.9
Q ss_pred CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCC--CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee
Q 008011 358 TGVGLISCGWFLDGGGIFAGMTDKSICLWDLDG--RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFE 435 (581)
Q Consensus 358 ~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 435 (581)
....|..+..+|+|.+++..|..| |.|..+.. +....+.. ....+.|-.+.-+..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~-g~~~i~Crt~~v~~~~~~------------------ 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED-GKKEINCRTVPVDERFFT------------------ 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC-CCcceeEEEEEechhhcc------------------
Confidence 345788899999999999888765 44444421 11111111 111233322222211111
Q ss_pred eeEecCCceEEEEECCC---CCEEEEEeeCCcEEEEEecCCCceeE
Q 008011 436 RWIEEEEVITSFSLSKD---NKYLLVNLINQEIHLWSIESDPKLVS 478 (581)
Q Consensus 436 ~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~~~~ 478 (581)
......|..+.|+|. +..|++-+.|+.+++||+.....+..
T Consensus 143 --~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 143 --SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred --CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeE
Confidence 112334666777774 46677777777777777765433333
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.54 E-value=0.47 Score=30.24 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCC---CeEEEeeCCCcEEEEECCC
Q 008011 318 KPVFTVSWSPND---HQLLTCGQEEAIRRWDVNS 348 (581)
Q Consensus 318 ~~V~~l~~sp~~---~~l~s~~~dg~i~vwd~~~ 348 (581)
+.|.++.|+|++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999985
No 457
>PLN02193 nitrile-specifier protein
Probab=92.33 E-value=16 Score=38.12 Aligned_cols=106 Identities=8% Similarity=0.026 Sum_probs=56.3
Q ss_pred CCCeEEEeeCC-----CcEEEEECCCCcEEEEEec---CC-CeEEEEEEecCCCeEEEEeCCC-----cEEEEeCCCCee
Q 008011 328 NDHQLLTCGQE-----EAIRRWDVNSGECLHVYEK---TG-VGLISCGWFLDGGGIFAGMTDK-----SICLWDLDGREL 393 (581)
Q Consensus 328 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~---~~-~~v~~~~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~ 393 (581)
++.+.+.|+.+ ..+.+||+.+.+-...-.. .. ..-.+++ .-+++..+.|+.++ .+..||+.+...
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45667777765 3588889887654332111 11 1111222 23555666666543 467888877665
Q ss_pred EeeccCc---cccEEEEEEeeCCCEEEEEEcC----CeEEEEECCCCe
Q 008011 394 ESWKGQK---TLRISDMAITDDGKRIISICRE----AAILLLDREANF 434 (581)
Q Consensus 394 ~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 434 (581)
....... ..+....+..-+++.++.++.+ ..+.+||+.+..
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 4332210 1111111222356677777655 468999998877
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.74 E-value=0.66 Score=29.57 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.1
Q ss_pred CcEEEEEEcCCC---CEEEEEECCCeEEEEEccc
Q 008011 273 DEVWFLQFSHDG---KYLASSSKDQSAIIWEVKE 303 (581)
Q Consensus 273 ~~V~~l~~s~~g---~~lasgs~dg~i~iwd~~~ 303 (581)
++|.++.|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 4888888889999999974
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.54 E-value=17 Score=36.84 Aligned_cols=144 Identities=8% Similarity=0.092 Sum_probs=87.0
Q ss_pred CCCeEEEeeCCCcEEEEECCCCcE----EEEEecCCCeEEEEEEec----CCCeEEEEeCCCcEEEEeCCC--C------
Q 008011 328 NDHQLLTCGQEEAIRRWDVNSGEC----LHVYEKTGVGLISCGWFL----DGGGIFAGMTDKSICLWDLDG--R------ 391 (581)
Q Consensus 328 ~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~--~------ 391 (581)
+...|++|+..|.++||+...+.. +..-..-..+|..+..-. .....++.-.-..+.+|.+.. +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 346899999999999999855431 111123356777776432 222233334556777777621 1
Q ss_pred --eeEeeccCc-cccEEEEEEee----C-CCEEEEEEcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEeeC
Q 008011 392 --ELESWKGQK-TLRISDMAITD----D-GKRIISICREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNLIN 462 (581)
Q Consensus 392 --~~~~~~~~~-~~~v~~i~~~~----~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d 462 (581)
.+.....++ ......+++-| . ...+.+-+.||.+.+|+-+... ......---...+.+.+.-..|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 111111111 11223333333 2 3577788999999999988776 4444444445567888888889999988
Q ss_pred CcEEEEEec
Q 008011 463 QEIHLWSIE 471 (581)
Q Consensus 463 ~~i~iwd~~ 471 (581)
..+..|...
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 888888763
No 460
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.46 E-value=27 Score=38.93 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=57.7
Q ss_pred EEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCC------CeEEEeeCCCcEEEEECCCCcEEEEEecC--
Q 008011 287 LASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPND------HQLLTCGQEEAIRRWDVNSGECLHVYEKT-- 358 (581)
Q Consensus 287 lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-- 358 (581)
++.+-.+|.+.-+.....+++.....-..-...|.|+++.+++ ++++.++.|+++++..+....++..+...
T Consensus 552 iVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l 631 (1205)
T KOG1898|consen 552 IVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGL 631 (1205)
T ss_pred EEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccccc
Confidence 3334444554445444333333222223344568899998854 67999999999999998877666665432
Q ss_pred CCeEEEEEEec---CCC------eEEEEeCCCcEEEE
Q 008011 359 GVGLISCGWFL---DGG------GIFAGMTDKSICLW 386 (581)
Q Consensus 359 ~~~v~~~~~~~---~~~------~l~sg~~dg~i~iw 386 (581)
..++.++.+-+ ++. +|.+|-.+|.+.-+
T Consensus 632 ~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 632 SSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred CCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 33333433322 222 45567677765544
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.18 E-value=3.2 Score=38.54 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred EEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcC---CeEEEEECCC-C-eeee------EecCCceEEEEECC
Q 008011 383 ICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICRE---AAILLLDREA-N-FERW------IEEEEVITSFSLSK 451 (581)
Q Consensus 383 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~i~d~~~-~-~~~~------~~~~~~i~~~~~sp 451 (581)
-.+||+.+++..........-...-.+.+||+.+++|+.. ..+++++... . ...+ ......-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3478888777766555544455556778999999988752 3578888655 1 1111 33445556677788
Q ss_pred CCCEEEEEeeCC-cEEEEEecCC-CceeEE-Eecc---ccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 452 DNKYLLVNLINQ-EIHLWSIESD-PKLVSR-YKGH---KRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 452 ~~~~l~~~~~d~-~i~iwd~~~~-~~~~~~-~~~~---~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
||+.|++|+... ...+|.-... ...... +... ......--..+.-|+|++++.+..+. .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999999998864 3445554221 111111 1110 11111112344578999999888765 56688888777766
Q ss_pred cc
Q 008011 526 AG 527 (581)
Q Consensus 526 ~~ 527 (581)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.14 E-value=18 Score=36.40 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=26.8
Q ss_pred CCCeEEEEeCC-----------CcEEEEeCCCCeeEeeccCccccEE-EEEEe-eCCCEEEEEEcC
Q 008011 370 DGGGIFAGMTD-----------KSICLWDLDGRELESWKGQKTLRIS-DMAIT-DDGKRIISICRE 422 (581)
Q Consensus 370 ~~~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~-~~~~~l~~~~~d 422 (581)
++...+.|+.+ ..+..||..+............... ..+.. -+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45566666643 2477788877665544321111111 12222 466677777643
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.05 E-value=19 Score=36.34 Aligned_cols=39 Identities=8% Similarity=-0.069 Sum_probs=20.2
Q ss_pred cEEEEeCCCCeeEeeccCcc-cc-EEEEEEeeCCCEEEEEEc
Q 008011 382 SICLWDLDGRELESWKGQKT-LR-ISDMAITDDGKRIISICR 421 (581)
Q Consensus 382 ~i~iwd~~~~~~~~~~~~~~-~~-v~~i~~~~~~~~l~~~~~ 421 (581)
.+.+||..+........... .. -.++. .-+++..+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v-~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVV-IKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEE-EECCEEEEEeee
Confidence 58889988766654433221 11 12222 235566666653
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.88 E-value=1.3 Score=40.67 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCceEEEe-------c-------cCcCCEEEEEEcCCCCcEEEEEECCCcEEEEcCCC
Q 008011 496 GFEQAFIASGSEDSQVYIWHRYTGELVLAL-------A-------GHSGSVNCVSWNPANLHMLASASDDRTIRIWGLDQ 561 (581)
Q Consensus 496 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-------~-------~h~~~v~~l~~~p~~~~~l~s~s~Dg~I~iW~~~~ 561 (581)
..++.++++.+.+|.+++||+.+++.+..- . .....|..+..+.+| .-+++-+ +|..+.|+.+-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 447789999999999999999988765432 1 245678899999888 5666665 47888888764
Q ss_pred c
Q 008011 562 I 562 (581)
Q Consensus 562 ~ 562 (581)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 465
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.59 E-value=15 Score=34.36 Aligned_cols=237 Identities=12% Similarity=0.047 Sum_probs=136.5
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcEEE
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGECLH 353 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~ 353 (581)
.-..++-+|||..-.++...+.|--.|..++. ....-.+....-..+..-||+..-++=+.. -|.-.|-++.+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGE---VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCc---eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 44567788899888888777777667766652 222222333334566777877766654333 34444554443221
Q ss_pred ---EEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEEC
Q 008011 354 ---VYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDR 430 (581)
Q Consensus 354 ---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~ 430 (581)
..+..........|.+.|..-+++.. |.---.|...+.+..+..........|+..|+|..-++.-.++.|...|.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 11233556677888888888888753 22112233344444444444456788999999998888888888888888
Q ss_pred CCCeeeeEec----CCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEe
Q 008011 431 EANFERWIEE----EEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGS 506 (581)
Q Consensus 431 ~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs 506 (581)
.......+.. ......+-.+|.+..-++....+.++-||-....-....+.+.+...+.++. ...++.-.+--
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grVW~sea 294 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRVWLSEA 294 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcEEeecc
Confidence 7765222222 2234456667788877777777888888876643222333333333333332 22333333333
Q ss_pred CCCcEEEEeCCC
Q 008011 507 EDSQVYIWHRYT 518 (581)
Q Consensus 507 ~dg~I~iwd~~~ 518 (581)
..|.|.-+|-++
T Consensus 295 ~agai~rfdpet 306 (353)
T COG4257 295 DAGAIGRFDPET 306 (353)
T ss_pred ccCceeecCccc
Confidence 344555555443
No 466
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=90.42 E-value=0.58 Score=34.72 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHhhcCCccC
Q 008011 65 EFIKIITRALYSLGYDKSGALLEEESGIPMH 95 (581)
Q Consensus 65 e~~~lI~q~L~e~G~~~s~~~l~~Esg~~~~ 95 (581)
=++.||..||+=+||+.|+.+|+.|+|.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 4688999999999999999999999998754
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.35 E-value=2.4 Score=38.95 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=48.0
Q ss_pred EeeCCCEEEEEEcCCeEEEEECCCCeeeeE----------------ecCCceEEEEECCCCCEEEEEeeCCcEEEEEecC
Q 008011 409 ITDDGKRIISICREAAILLLDREANFERWI----------------EEEEVITSFSLSKDNKYLLVNLINQEIHLWSIES 472 (581)
Q Consensus 409 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 472 (581)
+..+++++++.+.+|.+++||+.+.+.... .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 556788999999999999999998872221 2446688888888887766544 67888888754
No 468
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.19 E-value=0.18 Score=53.79 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=51.9
Q ss_pred eEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEE-----------EcCCCCcEEEEEECCCcEEE
Q 008011 488 FVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVS-----------WNPANLHMLASASDDRTIRI 556 (581)
Q Consensus 488 ~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~-----------~~p~~~~~l~s~s~Dg~I~i 556 (581)
..+.+|.+-++..++..+-.++.|++.+..+... ..+.+|...++.++ .+||| ..+++++.||.+++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGF 261 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccce
Confidence 3455666677778888888899888877654332 44556776665544 58999 79999999999999
Q ss_pred EcCC
Q 008011 557 WGLD 560 (581)
Q Consensus 557 W~~~ 560 (581)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8764
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.10 E-value=22 Score=35.49 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCCC-------EEEEEEcC---CeEEEEECCCCeeee
Q 008011 368 FLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDGK-------RIISICRE---AAILLLDREANFERW 437 (581)
Q Consensus 368 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~d---g~i~i~d~~~~~~~~ 437 (581)
.|....++....++-+.+||++++.+... ...+++.+.+-.+-. .+++..++ ..|++|.+......+
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~---~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSL---PVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEee---cCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Q ss_pred EecCCc----------eEEEEECCCCC----EEEEEeeCCcEEEEEecCCCc------eeEEEeccccceeEEEeeeCCC
Q 008011 438 IEEEEV----------ITSFSLSKDNK----YLLVNLINQEIHLWSIESDPK------LVSRYKGHKRARFVIRSCFGGF 497 (581)
Q Consensus 438 ~~~~~~----------i~~~~~sp~~~----~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~ 497 (581)
...... +..+|+-.+.. +.++...+|.+..|.+..... +++.|..... +..|....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ----~EGCVVDD 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ----PEGCVVDD 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-----EEEEEEET
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc----ceEEEEec
Q ss_pred CCcEEEEEeCCCcEEEEeCC-----CCceEEEecc--CcCCEEEEEE----cCCCCcEEEEEECCCcEEEEcCCCc
Q 008011 498 EQAFIASGSEDSQVYIWHRY-----TGELVLALAG--HSGSVNCVSW----NPANLHMLASASDDRTIRIWGLDQI 562 (581)
Q Consensus 498 ~~~~l~sgs~dg~I~iwd~~-----~~~~~~~l~~--h~~~v~~l~~----~p~~~~~l~s~s~Dg~I~iW~~~~~ 562 (581)
...+|+.+-++--|+-|+.+ .++.+....+ ....|-.|+. ...| ++|+|.-.+++..||+....
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EEEEEEGGGTEEEEEESSTT
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EEEEEcCCCCeEEEEecCCC
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.58 E-value=13 Score=38.12 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.5
Q ss_pred CceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008011 442 EVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 442 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
..|.++...+..+.+++.+.++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34888999998899999999999999999753
No 471
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.29 E-value=17 Score=39.12 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=43.5
Q ss_pred EEEEEEeeCCCEEEEEEcCC-----eEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCC
Q 008011 404 ISDMAITDDGKRIISICREA-----AILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 404 v~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
-..+.|-|+|..+++...|| .|.++..+.-. .........+..++|+-....++++ ..+.+.+|-..+-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 34589999999999988665 35555544432 1223344556677776655555543 3678888877553
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=13 Score=42.45 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=24.8
Q ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEcc
Q 008011 274 EVWFLQFSHDGKYLASSSKDQSAIIWEVK 302 (581)
Q Consensus 274 ~V~~l~~s~~g~~lasgs~dg~i~iwd~~ 302 (581)
....++|+|.-+++|.|..+|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34567899999999999999999999764
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.14 E-value=42 Score=37.53 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=100.0
Q ss_pred cEEEEECCCCcEEEEEecC----CCeEEEEEEecCCC--eEEEEe-----------CCCcEEEEeC-CCCeeEeeccCcc
Q 008011 340 AIRRWDVNSGECLHVYEKT----GVGLISCGWFLDGG--GIFAGM-----------TDKSICLWDL-DGRELESWKGQKT 401 (581)
Q Consensus 340 ~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~--~l~sg~-----------~dg~i~iwd~-~~~~~~~~~~~~~ 401 (581)
.|++.|..+++.+..+... ...+..+.|+.... .+++|. .+|.++.|++ +.++...+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3788888777766655433 23455566655333 233332 2455777766 2333222222222
Q ss_pred ccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe----eeeEecCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCcee
Q 008011 402 LRISDMAITDDGKRIISICREAAILLLDREANF----ERWIEEEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLV 477 (581)
Q Consensus 402 ~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 477 (581)
-+-.-.++.|-..++++ +....+++||+.... .........|+++.+ .+..+++|.....+.++..+...+..
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 22333456666665544 456799999998876 122223556777776 46778888887777777666655666
Q ss_pred EEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeC
Q 008011 478 SRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHR 516 (581)
Q Consensus 478 ~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~ 516 (581)
..+...+.+.++..+... |...+|.+..=|.+.+-.+
T Consensus 1011 ~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 677666666665554442 4456677766676666653
No 474
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=88.96 E-value=38 Score=36.79 Aligned_cols=146 Identities=25% Similarity=0.254 Sum_probs=81.9
Q ss_pred eccccCcEEEEEEcCCCCEEEEEECCCe--EEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEee------CCC
Q 008011 268 LEAHSDEVWFLQFSHDGKYLASSSKDQS--AIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCG------QEE 339 (581)
Q Consensus 268 l~~h~~~V~~l~~s~~g~~lasgs~dg~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~------~dg 339 (581)
...+...+..+.|+|+|..++..+.++. ..+|-+...+ ....+...|....|+|++..++... .++
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g------~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG------LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC------ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 3456778888999999999988774432 4455443221 2344556678889999888877621 122
Q ss_pred c-------EEEEECCCC-cE-----------EEEEecCCCeEEEEEEecCCCeEEEEeCCCc-------EEEEeCCCCee
Q 008011 340 A-------IRRWDVNSG-EC-----------LHVYEKTGVGLISCGWFLDGGGIFAGMTDKS-------ICLWDLDGREL 393 (581)
Q Consensus 340 ~-------i~vwd~~~~-~~-----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-------i~iwd~~~~~~ 393 (581)
. +.+|....+ .. ..........+....+.+++..++....+.. ..++...++.+
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGEL 208 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCce
Confidence 2 334433333 11 1111223445556666666666665544332 23333334444
Q ss_pred EeeccCccccEEEEEEeeCCCEEEEEE
Q 008011 394 ESWKGQKTLRISDMAITDDGKRIISIC 420 (581)
Q Consensus 394 ~~~~~~~~~~v~~i~~~~~~~~l~~~~ 420 (581)
....... ..+..+.+.++++.++..+
T Consensus 209 ~~~~~~~-~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 209 ESLTPGE-GSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEEcCCC-ceeeeeeeCCCCCeeEEec
Confidence 4444433 3588888889988555544
No 475
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.85 E-value=4.9 Score=43.21 Aligned_cols=114 Identities=6% Similarity=0.126 Sum_probs=74.0
Q ss_pred cEEEEEEcC--CCCEEEEEECCCeEEEEEccc-------C----C------eeeEEEeecCCCCCeEEEEeC--CCCCeE
Q 008011 274 EVWFLQFSH--DGKYLASSSKDQSAIIWEVKE-------D----G------QVSLKHRLSGHRKPVFTVSWS--PNDHQL 332 (581)
Q Consensus 274 ~V~~l~~s~--~g~~lasgs~dg~i~iwd~~~-------~----~------~~~~~~~~~~h~~~V~~l~~s--p~~~~l 332 (581)
.|+.|.... +...|+.|..||.|.+|.++. . . ...+...+. -...+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554443 456899999999999997631 0 0 001111122 23468999998 778889
Q ss_pred EEeeCCCcEEEEECCCC--cEEE-EEecCCCeEEEEEEecCC---C---eEEEEeCCCcEEEEeC
Q 008011 333 LTCGQEEAIRRWDVNSG--ECLH-VYEKTGVGLISCGWFLDG---G---GIFAGMTDKSICLWDL 388 (581)
Q Consensus 333 ~s~~~dg~i~vwd~~~~--~~~~-~~~~~~~~v~~~~~~~~~---~---~l~sg~~dg~i~iwd~ 388 (581)
|+++....|.||-.... +... .-..+...|.+++|.++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888888765432 1111 111345678889998743 2 6788899999998887
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.70 E-value=25 Score=37.88 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=25.5
Q ss_pred cCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC
Q 008011 357 KTGVGLISCGWFLDGGGIFAGMTDKSICLWDL 388 (581)
Q Consensus 357 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 388 (581)
.-..+|...+|+.|.+.++....+..|.+++-
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 34668889999999998887778888888764
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=9 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.2
Q ss_pred CeEEEEeCCCCCeEEEeeCCCcEEEEE
Q 008011 319 PVFTVSWSPNDHQLLTCGQEEAIRRWD 345 (581)
Q Consensus 319 ~V~~l~~sp~~~~l~s~~~dg~i~vwd 345 (581)
.|..+..++.|..++-.|.+|.+..+=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788899999999999988665543
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.12 E-value=41 Score=36.09 Aligned_cols=157 Identities=12% Similarity=0.153 Sum_probs=83.8
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeee---E--ecC------CceEEEEECCCCCEEEEEee-CC---cE
Q 008011 401 TLRISDMAITDDGKRIISICREAAILLLDREANFERW---I--EEE------EVITSFSLSKDNKYLLVNLI-NQ---EI 465 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~--~~~------~~i~~~~~sp~~~~l~~~~~-d~---~i 465 (581)
...+..+.+.++++.+++...+|.|.+||........ . .+. .-|..........++++-+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 3479999999999999999999999999993332111 1 111 11222221122345555444 32 46
Q ss_pred EEEEecCCCceeEEEec---cccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccC-----c-CCEEEEE
Q 008011 466 HLWSIESDPKLVSRYKG---HKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGH-----S-GSVNCVS 536 (581)
Q Consensus 466 ~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-----~-~~v~~l~ 536 (581)
+++.+......+..+.. +.........|+ .+|.+..- .++.|.+|++.+.+...++.-. . ..+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y--~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCY--QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEE--eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 77777222233333321 111111112222 24443333 6778999999887766655422 1 2333433
Q ss_pred -EcCCCCcEEEEEECCCcEEEEcCCCcCcc
Q 008011 537 -WNPANLHMLASASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 537 -~~p~~~~~l~s~s~Dg~I~iW~~~~~~~~ 565 (581)
.+|+ ++|.+ .+++|++.|+.-..+.
T Consensus 285 ~~s~n--RvLLs--~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 285 PPSPN--RVLLS--VNNKIYLLDLKFESIL 310 (670)
T ss_pred cCCCC--eEEEE--cCCEEEEEeehhhhhh
Confidence 2332 35554 4568999998755444
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.04 E-value=30 Score=34.38 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCeeEeeccCcc-ccEEEEEEeeCCCEEEEEEc
Q 008011 381 KSICLWDLDGRELESWKGQKT-LRISDMAITDDGKRIISICR 421 (581)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~ 421 (581)
..+.+||..+........... .........-+++..+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 468889987766554433221 11122223346677777764
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=87.88 E-value=30 Score=34.22 Aligned_cols=150 Identities=10% Similarity=0.011 Sum_probs=77.8
Q ss_pred CCeEEEEEEecCCCeEEEEeCCCcEEE-EeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe--e
Q 008011 359 GVGLISCGWFLDGGGIFAGMTDKSICL-WDLDGRELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANF--E 435 (581)
Q Consensus 359 ~~~v~~~~~~~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~ 435 (581)
...+.++.+.+++..++++ ..|.+.. +|-.+.............+.++.+.++++.+++ +..|.+++-..+.+. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccc
Confidence 4567888888887655544 4555543 232223333333344457899999999887665 456776543333333 1
Q ss_pred eeE-e---cCCceEEEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEec-cccceeEEEeeeCCCCCcEEEEEeCCCc
Q 008011 436 RWI-E---EEEVITSFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKG-HKRARFVIRSCFGGFEQAFIASGSEDSQ 510 (581)
Q Consensus 436 ~~~-~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~sgs~dg~ 510 (581)
... . ....+..+.+.|++..+++ +.+|.+.. ..+.+ +.-..... ...........+ ..+++. +..+..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~-~~~~~~-~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVF-LDPEKG-FVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEE-eCCCce-EEECCCce
Confidence 111 1 1234778899998776554 44665543 33333 22222211 011111222333 223334 44666777
Q ss_pred EEEEe
Q 008011 511 VYIWH 515 (581)
Q Consensus 511 I~iwd 515 (581)
|-.|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 77665
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=20 Score=40.98 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCCeEEEEeCCCCCeEEEeeCCCcEEEEECC
Q 008011 317 RKPVFTVSWSPNDHQLLTCGQEEAIRRWDVN 347 (581)
Q Consensus 317 ~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~ 347 (581)
......++|+|.-.+++.+..+|.|+++-..
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEeccc
Confidence 3445678999999999999999999999754
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.41 E-value=20 Score=32.28 Aligned_cols=102 Identities=13% Similarity=0.191 Sum_probs=61.1
Q ss_pred CEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCC------cEEEE-ECCCC----cEEE
Q 008011 285 KYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEE------AIRRW-DVNSG----ECLH 353 (581)
Q Consensus 285 ~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg------~i~vw-d~~~~----~~~~ 353 (581)
+.|+.+...+.|.+|++.. .......++..- +.|..+.++..|++|+|--.+. .+|+| |++.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~-~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQ-EECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEccc-CCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 3444445677899999983 333455555544 7899999999999999974332 56665 22211 1111
Q ss_pred -EEec---------------------CCCeEEEEEEecCCCeEEEEeCCCcEEEEeCC
Q 008011 354 -VYEK---------------------TGVGLISCGWFLDGGGIFAGMTDKSICLWDLD 389 (581)
Q Consensus 354 -~~~~---------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 389 (581)
.+.+ -..++.+++..|-...|++|+. +.+.+|.+.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~ 163 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLK 163 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence 1111 1234566666675556666654 567888764
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.38 E-value=3.2 Score=44.37 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=45.6
Q ss_pred CCCCEEEEEECCCeEEEEEccc----CCeeeEEEe--------ec-----------CCCCCeEEEEeCC----CCCeEEE
Q 008011 282 HDGKYLASSSKDQSAIIWEVKE----DGQVSLKHR--------LS-----------GHRKPVFTVSWSP----NDHQLLT 334 (581)
Q Consensus 282 ~~g~~lasgs~dg~i~iwd~~~----~~~~~~~~~--------~~-----------~h~~~V~~l~~sp----~~~~l~s 334 (581)
++...++.+..||.+....... +..+..... +. .....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566777788888887777653 111111100 00 1123456666666 7789999
Q ss_pred eeCCCcEEEEECCCCcEEEEEec
Q 008011 335 CGQEEAIRRWDVNSGECLHVYEK 357 (581)
Q Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~ 357 (581)
.+.|+++|+||+.+++++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999776643
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.05 E-value=33 Score=33.79 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=62.8
Q ss_pred CeEEEEEEecCCCeEEEEeCCCc------EEEEeCCC--C---ee-----EeeccCc-------cccEEEEEEeeCCCEE
Q 008011 360 VGLISCGWFLDGGGIFAGMTDKS------ICLWDLDG--R---EL-----ESWKGQK-------TLRISDMAITDDGKRI 416 (581)
Q Consensus 360 ~~v~~~~~~~~~~~l~sg~~dg~------i~iwd~~~--~---~~-----~~~~~~~-------~~~v~~i~~~~~~~~l 416 (581)
+.+..+.+.+++..+++.+.+|. ++.+++.. . .+ ..+.... .....+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45667777766667777777776 65555532 1 11 0111111 1144578887888888
Q ss_pred EEEEcC------CeEEEEECCCCee-ee---------------EecCCceEEEEECCCCCEEEEEee
Q 008011 417 ISICRE------AAILLLDREANFE-RW---------------IEEEEVITSFSLSKDNKYLLVNLI 461 (581)
Q Consensus 417 ~~~~~d------g~i~i~d~~~~~~-~~---------------~~~~~~i~~~~~sp~~~~l~~~~~ 461 (581)
++.-.+ ..|+.++...... .+ ...+...-+++++|+|+.|+++..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 877777 7898898773321 11 123455789999999997777654
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.91 E-value=33 Score=33.74 Aligned_cols=107 Identities=18% Similarity=0.263 Sum_probs=64.6
Q ss_pred cCcEEEEEEcCCCCEEEEEECCCe------EEEEEcccC----CeeeEE--EeecCCCC--------CeEEEEeCCCCCe
Q 008011 272 SDEVWFLQFSHDGKYLASSSKDQS------AIIWEVKED----GQVSLK--HRLSGHRK--------PVFTVSWSPNDHQ 331 (581)
Q Consensus 272 ~~~V~~l~~s~~g~~lasgs~dg~------i~iwd~~~~----~~~~~~--~~~~~h~~--------~V~~l~~sp~~~~ 331 (581)
-+.+..+.+.+++..+++.+.+|. +...++... ..+... ..+..-.+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456778889866566666677776 555555431 111111 11222221 2336778778888
Q ss_pred EEEeeCC------CcEEEEECCCCcEEEEEe---------------cCCCeEEEEEEecCCCeEEEEeC
Q 008011 332 LLTCGQE------EAIRRWDVNSGECLHVYE---------------KTGVGLISCGWFLDGGGIFAGMT 379 (581)
Q Consensus 332 l~s~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~sg~~ 379 (581)
+++.-.+ ..|..++.. |+....+. ......-+++++|+++.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8877666 678888866 66544431 12456788999999997776644
No 486
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.55 E-value=20 Score=36.69 Aligned_cols=92 Identities=5% Similarity=-0.018 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCeEEEEeCCCcEEEEeCCC-CeeEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCeeeeEe
Q 008011 361 GLISCGWFLDGGGIFAGMTDKSICLWDLDG-RELESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREANFERWIE 439 (581)
Q Consensus 361 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 439 (581)
.|..+..++.|..++..+.+|.+.++=.+. +.-..+.. ....|+|=.+.-+. .+++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~-~~ftss------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAE-RFFTSS------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeecccc-eeeccC-------------------
Confidence 566777888999999888888665543221 11111111 11123333332222 222211
Q ss_pred cCCceEEEEECCCC---CEEEEEeeCCcEEEEEecCC
Q 008011 440 EEEVITSFSLSKDN---KYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 440 ~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~ 473 (581)
..-.+..++|+|+. ..|++-+.|+.|++||+...
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 11235677898865 67777888999999998765
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.38 E-value=4.5 Score=40.26 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=97.8
Q ss_pred eeeeccccCcEEEEEEcCCCCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCC----CeE-EEEeCCCCCeEEEeeCCC
Q 008011 265 LQILEAHSDEVWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRK----PVF-TVSWSPNDHQLLTCGQEE 339 (581)
Q Consensus 265 ~~~l~~h~~~V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~----~V~-~l~~sp~~~~l~s~~~dg 339 (581)
+..+..-...|..+-..|||+.|..-+. ..+.|+++.+. .+...+......+ .|+ .+..-..|..+++++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r-~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKR-SLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeeccc-ccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 3445666677888889999997776554 67889988743 2222222222122 122 122223466788888999
Q ss_pred cEEEE-ECCCCc-----EEEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeCCCCeeEeeccCccccEEEEEEeeCC
Q 008011 340 AIRRW-DVNSGE-----CLHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDLDGRELESWKGQKTLRISDMAITDDG 413 (581)
Q Consensus 340 ~i~vw-d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 413 (581)
.|.-| |++.+. .++.++-...++..+.-..+.+-+++-+.+|++.++.....+..-+...-. .+.-++++|.+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~-~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ-APQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc-CcceeeeCccc
Confidence 98877 554321 223333333444444333345567788888988887654443333322222 56778999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe
Q 008011 414 KRIISICREAAILLLDREANF 434 (581)
Q Consensus 414 ~~l~~~~~dg~i~i~d~~~~~ 434 (581)
.++++- ..|.++++.+++..
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred chheee-cCCceEEEEecCCC
Confidence 888764 45678888776643
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.26 E-value=18 Score=29.94 Aligned_cols=111 Identities=9% Similarity=0.171 Sum_probs=65.2
Q ss_pred EEeeCCCEEEEEEcCCeEEEEECCCCe---------eeeEecCCceEEEEECC-----CCCEEEEEeeCCcEEEEEecCC
Q 008011 408 AITDDGKRIISICREAAILLLDREANF---------ERWIEEEEVITSFSLSK-----DNKYLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 408 ~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~ 473 (581)
.|......|++++.-|.|.+++..... ..++.....|++++--+ +...|++|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 455555678888899999999876432 46667778888886544 344566655 778999999886
Q ss_pred CceeEEEeccccceeEEEee-eCCCCCcEEEEEeCCCcEEEEeCCCCceE
Q 008011 474 PKLVSRYKGHKRARFVIRSC-FGGFEQAFIASGSEDSQVYIWHRYTGELV 522 (581)
Q Consensus 474 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~sgs~dg~I~iwd~~~~~~~ 522 (581)
.....+ .-...+..+.+- +......++++| .+..|.-||..-.+..
T Consensus 84 ~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred chhhhh--hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 443322 122222223222 222234444444 4556777775444433
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.07 E-value=11 Score=43.02 Aligned_cols=166 Identities=17% Similarity=0.276 Sum_probs=93.9
Q ss_pred ccccccceeeeccccCcEEEEEEcCC-CCEEEEEECCCeEEEEEcccCCeeeEEEeecCCCCCeEEEEe--------CCC
Q 008011 258 NRIPSQTLQILEAHSDEVWFLQFSHD-GKYLASSSKDQSAIIWEVKEDGQVSLKHRLSGHRKPVFTVSW--------SPN 328 (581)
Q Consensus 258 ~~~~~~~~~~l~~h~~~V~~l~~s~~-g~~lasgs~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~ 328 (581)
..+|...+..+. |...-+.+-+-|. ++.-+ +.|+.+.+|+.++++... .+.+-...|..+.. .|.
T Consensus 65 ~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~---~~d~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELA---EYDGLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred ccCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccc---cccchhhhheeeeeecCCCCcchhh
Confidence 445555555555 3333334444443 33333 358889999999875543 34444444555443 222
Q ss_pred CCeEEEeeCCCcEEEEECCC----CcE-----EEEEecCCCeEEEEEEecCCCeEEEEeCCCcEEEEeC----CC----C
Q 008011 329 DHQLLTCGQEEAIRRWDVNS----GEC-----LHVYEKTGVGLISCGWFLDGGGIFAGMTDKSICLWDL----DG----R 391 (581)
Q Consensus 329 ~~~l~s~~~dg~i~vwd~~~----~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~----~~----~ 391 (581)
=++++..+.--.|.++-+.- +.. ..++...+..|.|+....+|+.++ ++.||. +|.+ .. .
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~--lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGN--LYELVYQAEDGWFGS 215 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEE-eecCCC--EEEEEEeccCchhhc
Confidence 24444444444566654321 111 122333456788888666665555 456664 4443 10 0
Q ss_pred ---e--------------eEeeccCccccEEEEEEeeCCCEEEEEEcCCeEEEEECCC
Q 008011 392 ---E--------------LESWKGQKTLRISDMAITDDGKRIISICREAAILLLDREA 432 (581)
Q Consensus 392 ---~--------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 432 (581)
+ +......+..+|..+++...-..+.+-+..|+|.+||+..
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 1112223355899999999889999999999999999987
No 490
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.87 E-value=25 Score=35.24 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=93.7
Q ss_pred cccEEEEEEeeCCCEEEEEEcCCeEEEEECCCCee--eeEec--CC----ceE-EEEECCCCCEEEEEeeCCcEEEE-Ee
Q 008011 401 TLRISDMAITDDGKRIISICREAAILLLDREANFE--RWIEE--EE----VIT-SFSLSKDNKYLLVNLINQEIHLW-SI 470 (581)
Q Consensus 401 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~--~~----~i~-~~~~sp~~~~l~~~~~d~~i~iw-d~ 470 (581)
...+..+-..|||+.+..-+. ..+.++++.+... +.... .+ .|+ .+..-..|.-++++..||.|.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 346778889999999888766 7788888776551 11111 11 122 22223356678888889988766 55
Q ss_pred cCCCce----eEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEeccCcCCEEEEEEcCCCCcEEE
Q 008011 471 ESDPKL----VSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLALAGHSGSVNCVSWNPANLHMLA 546 (581)
Q Consensus 471 ~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~v~~l~~~p~~~~~l~ 546 (581)
+....+ ++.++-.... +....-..+.+-+++-+.+|++.++.....+.+..-. --..+.-++++|.+ .+++
T Consensus 299 r~~~~p~l~h~R~f~l~pa~---~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~-~~Ll 373 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAE---VQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQ-AYLL 373 (733)
T ss_pred ecCCCCcceeeeccccCccc---ceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCccc-chhe
Confidence 543221 1222221111 2222212344567888889999888765544443222 22356778999998 4665
Q ss_pred EEECCCcEEEEcCCCcCcc
Q 008011 547 SASDDRTIRIWGLDQINMK 565 (581)
Q Consensus 547 s~s~Dg~I~iW~~~~~~~~ 565 (581)
+- +.|.|+++.+++....
T Consensus 374 ~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 374 SE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ee-cCCceEEEEecCCCCC
Confidence 54 4578999998876543
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.86 E-value=9.7 Score=43.27 Aligned_cols=136 Identities=13% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCCcEEEEECCCCcEEEEEecCCCeEEEEEE--------ecCCCeEEEEeCCCcEEEEeCC----CCeeEeec-----cC
Q 008011 337 QEEAIRRWDVNSGECLHVYEKTGVGLISCGW--------FLDGGGIFAGMTDKSICLWDLD----GRELESWK-----GQ 399 (581)
Q Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~sg~~dg~i~iwd~~----~~~~~~~~-----~~ 399 (581)
-|+.+.+|+.+++.....+.+....|..+.. -|.=+++++-..--.|.++-+. +.....+. ..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4778999999998777777766666665543 2333455555555556666542 11111111 12
Q ss_pred ccccEEEEEEeeCCCEEEEEEcCCeEEE--EECCCCe----------------------eeeE-ecCCceEEEEECCCCC
Q 008011 400 KTLRISDMAITDDGKRIISICREAAILL--LDREANF----------------------ERWI-EEEEVITSFSLSKDNK 454 (581)
Q Consensus 400 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i--~d~~~~~----------------------~~~~-~~~~~i~~~~~sp~~~ 454 (581)
....|+|+....+|+.+.+| .||.|+- |....+- .... .+..+|..+.+.....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 23478999988888776665 4554432 2222110 0111 3456899999998889
Q ss_pred EEEEEeeCCcEEEEEecCC
Q 008011 455 YLLVNLINQEIHLWSIESD 473 (581)
Q Consensus 455 ~l~~~~~d~~i~iwd~~~~ 473 (581)
.+.+-+..+.|.+||+...
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 9999999999999999773
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=84.49 E-value=33 Score=33.83 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=55.1
Q ss_pred cEEEEEEeeCCCEEEEEEcCCeEEEEECCCCe-eeeE-------ecCCceEEEEECCC---CCEEEEEeeC---------
Q 008011 403 RISDMAITDDGKRIISICREAAILLLDREANF-ERWI-------EEEEVITSFSLSKD---NKYLLVNLIN--------- 462 (581)
Q Consensus 403 ~v~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~sp~---~~~l~~~~~d--------- 462 (581)
..+.|+|.|||+.++ +...|.|++++..... .... ........++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 568899999987665 4669999999943332 1111 22345789999994 3444444431
Q ss_pred CcEEEEEecCCC-------ceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCC
Q 008011 463 QEIHLWSIESDP-------KLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDS 509 (581)
Q Consensus 463 ~~i~iwd~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg 509 (581)
..|.-|...... .++..+............+.+.|+|.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 244445554331 11122222111222233344488887777666543
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.27 E-value=6.5 Score=34.57 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred EEEECCCCCEEEEEeeCCcEEEEEecCCCceeEEEeccccceeEEEeeeCCCCCcEEEEEeCCCcEEEEeCCCCceEEEe
Q 008011 446 SFSLSKDNKYLLVNLINQEIHLWSIESDPKLVSRYKGHKRARFVIRSCFGGFEQAFIASGSEDSQVYIWHRYTGELVLAL 525 (581)
Q Consensus 446 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 525 (581)
+++||.|| .|++++ +..|+|.+..+.. .+................+...-.+-+... ...-|-.........-
T Consensus 9 ~l~WS~Dg-~laV~t-~~~v~IL~~~~P~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~ 81 (173)
T PF12657_consen 9 ALAWSEDG-QLAVAT-GESVHILDPQTPN----SLSKSFIPRPLTLPPSSIQWPITSIRRNLF-TSSEWPTESPRSMDDE 81 (173)
T ss_pred CeeECCCC-CEEEEc-CCeEEEEeccCCc----ccccccccCCcccccccCCCccceEecCcc-ccccCceecccccccc
Q ss_pred ccCcCCEEEEEEcCCC-----CcEEEEEECCCcEEEE
Q 008011 526 AGHSGSVNCVSWNPAN-----LHMLASASDDRTIRIW 557 (581)
Q Consensus 526 ~~h~~~v~~l~~~p~~-----~~~l~s~s~Dg~I~iW 557 (581)
......|.+++|||.| ..+|++.+.+|.|.||
T Consensus 82 ~~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~ 118 (173)
T PF12657_consen 82 EISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY 118 (173)
T ss_pred ccccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE
No 494
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.24 E-value=22 Score=34.03 Aligned_cols=93 Identities=10% Similarity=0.180 Sum_probs=58.8
Q ss_pred CcEEEEECCCCcEEEEEecCCCeEEEEEEecCCCeEEEEe------CCCcEEEEeCCCCeeEeeccCc----cccEEEEE
Q 008011 339 EAIRRWDVNSGECLHVYEKTGVGLISCGWFLDGGGIFAGM------TDKSICLWDLDGRELESWKGQK----TLRISDMA 408 (581)
Q Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~ 408 (581)
..|++||..+.+-...-..-.+.|+.+.|..+.+.++.|. ....+..||..+.......... ..++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999887765554445577899999996666666654 3457889999887765555522 35677776
Q ss_pred Eee-CCCEEE-EEE-cCC--eEEEEECC
Q 008011 409 ITD-DGKRII-SIC-REA--AILLLDRE 431 (581)
Q Consensus 409 ~~~-~~~~l~-~~~-~dg--~i~i~d~~ 431 (581)
+.. |+..+. .|. .++ .|..||-.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCC
Confidence 643 343343 332 233 45555543
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.95 E-value=37 Score=32.49 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=59.4
Q ss_pred CcEEEEeCCCCeeEeeccCccccEEEEEEeeCCCEEEEEE------cCCeEEEEECCCCeeeeEe------cCCceEEEE
Q 008011 381 KSICLWDLDGRELESWKGQKTLRISDMAITDDGKRIISIC------REAAILLLDREANFERWIE------EEEVITSFS 448 (581)
Q Consensus 381 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~------~~~~i~~~~ 448 (581)
..|++||..+.+.......-.+.|+++.|..+.+.++.|. ....+..||..+..-.... ..++++.+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4699999998887777766677899999997766666664 3557888999888732222 246787777
Q ss_pred ECC-CCC-EEEEEe-eCC--cEEEEEe
Q 008011 449 LSK-DNK-YLLVNL-INQ--EIHLWSI 470 (581)
Q Consensus 449 ~sp-~~~-~l~~~~-~d~--~i~iwd~ 470 (581)
+.. |+. +.+.|. .++ .|..||=
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcC
Confidence 643 443 333433 233 3555543
No 496
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=83.65 E-value=13 Score=41.03 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcccCCe--eeEEEeecCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCC
Q 008011 275 VWFLQFSHDGKYLASSSKDQSAIIWEVKEDGQ--VSLKHRLSGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSG 349 (581)
Q Consensus 275 V~~l~~s~~g~~lasgs~dg~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~ 349 (581)
-.|+.....+..+++|...|.+.+++...... ......-.+++.++.-+.|.|+.+.++.+-..|...+|....+
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 34556666788999999999999998753211 1111122344457788899999999999988899999976543
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.31 E-value=5.8 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=22.4
Q ss_pred eccCcCCEEEEEEcCCCCcEEEEEECC--CcEEEE
Q 008011 525 LAGHSGSVNCVSWNPANLHMLASASDD--RTIRIW 557 (581)
Q Consensus 525 l~~h~~~v~~l~~~p~~~~~l~s~s~D--g~I~iW 557 (581)
+....+.-....|+|||..++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 333455677889999997666677777 777776
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.20 E-value=9.4 Score=29.14 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=30.9
Q ss_pred EcCCeEEEEECCCCe-eeeEecCCceEEEEECCCCCEEEEEe
Q 008011 420 CREAAILLLDREANF-ERWIEEEEVITSFSLSKDNKYLLVNL 460 (581)
Q Consensus 420 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~ 460 (581)
..+|.+..||..+++ ......-...+.+++++|+.+++++-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 346788999999988 45666677889999999999888764
No 499
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=86 Score=35.09 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=42.9
Q ss_pred EcCCCCEEEEEECCCeEEEEEcccCCeeeEEEe------e--cCCCCCeEEEEeCCCCCeEEEeeCCCcEEEEECCCCcE
Q 008011 280 FSHDGKYLASSSKDQSAIIWEVKEDGQVSLKHR------L--SGHRKPVFTVSWSPNDHQLLTCGQEEAIRRWDVNSGEC 351 (581)
Q Consensus 280 ~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~------~--~~h~~~V~~l~~sp~~~~l~s~~~dg~i~vwd~~~~~~ 351 (581)
+..-|+.+..|+.+|.+.+|.+.+......... + .-+..+|..+...+.-..+++ -.|+.|.++++.+-+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcccc
Confidence 344677899999999999999875422111111 0 112456666666654444444 3466788888766544
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.51 E-value=5.3 Score=24.73 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=20.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEE-CC--CeEEEE
Q 008011 269 EAHSDEVWFLQFSHDGKYLASSS-KD--QSAIIW 299 (581)
Q Consensus 269 ~~h~~~V~~l~~s~~g~~lasgs-~d--g~i~iw 299 (581)
......-.+..|||||++|+-++ .+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34555678899999999887665 34 555555
Done!