BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008014
(581 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4XTZ6|CLPX_PSEMY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
mendocina (strain ymp) GN=clpX PE=3 SV=1
Length = 426
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 181/307 (58%), Positives = 225/307 (73%), Gaps = 23/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P PKEI LD++VIGQERAKKVLSVAVYNHY R+ N+ +K
Sbjct: 62 AHKLPAPKEISAILDQYVIGQERAKKVLSVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 --DDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 164
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 165 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 224
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGFGA VR+ +
Sbjct: 225 PQGGRKHPQQEFLQVDTRNILFICGGAFAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIG 284
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PV+ +L L E LVQ+LTEPKNAL KQY
Sbjct: 285 ES------LREVEPDDLVKFGLIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYA 338
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 339 KLFEMEG 345
>sp|B8GNT9|CLPX_THISH ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=clpX PE=3
SV=1
Length = 425
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 228/311 (73%), Gaps = 23/311 (7%)
Query: 258 GSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCT 317
G+ +G+K P P EI K LD++VIGQ+RAKK+L+VAVYNHY R+ +S+
Sbjct: 58 GAAVGDKLPKPHEIKKILDEYVIGQDRAKKILAVAVYNHYKRLEARNSK----------- 106
Query: 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE 377
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE
Sbjct: 107 ------DEVELAKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE 160
Query: 378 SILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437
+I+ KLL DY+V AQ GIVYIDE+DKI++KA++ +I+RDVSGEGVQQALLK++EGT+
Sbjct: 161 NIIQKLLQKCDYDVEKAQTGIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTI 220
Query: 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497
+VP +G RKHP+ + +Q+DT +ILFI GGAF ++K I +R + IGF A V++
Sbjct: 221 ASVPPQGGRKHPQQEFLQVDTHNILFIVGGAFAGLDKVIRDRTEKGGIGFSAKVKSKEEK 280
Query: 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALG 557
G V S + VE DLI YGLIPEFVGR PV+ +L L E+ L+Q+LTEPKNAL
Sbjct: 281 GPV------SRTLSGVEPEDLIKYGLIPEFVGRLPVVATLEELDEDALIQILTEPKNALT 334
Query: 558 KQYRKMFQMNG 568
KQY K+F+M G
Sbjct: 335 KQYGKLFEMEG 345
>sp|A1WUM6|CLPX_HALHL ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Halorhodospira halophila (strain DSM 244 / SL1)
GN=clpX PE=3 SV=1
Length = 426
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/312 (56%), Positives = 225/312 (72%), Gaps = 23/312 (7%)
Query: 257 GGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSC 316
G + G P P EI + LD++VIGQE AKKVLSVAVYNHY R+ + +SQ
Sbjct: 58 GAATEGGGLPRPHEINRELDQYVIGQEHAKKVLSVAVYNHYKRLESRTSQ---------- 107
Query: 317 TTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV 376
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDV
Sbjct: 108 -------DDVELTKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV 160
Query: 377 ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436
E+I+ KLL DY+V AQ GIVYIDE+DK+++KA++ +I+RDVSGEGVQQALLK++EGT
Sbjct: 161 ENIIQKLLQKCDYDVEKAQHGIVYIDEIDKVSRKADNPSITRDVSGEGVQQALLKLIEGT 220
Query: 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496
+VP +G RKHP+ + +Q+DT ++LFICGGAF ++K I ER + IGF A ++
Sbjct: 221 TASVPPQGGRKHPQQEFVQVDTSNMLFICGGAFAGLDKVIQERSERGGIGFSAEIKGEGE 280
Query: 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556
V + ++TVE SDL+ YGLIPEFVGR PV+ +L L + LVQ+L EPKNAL
Sbjct: 281 RASVGET------LQTVEPSDLVRYGLIPEFVGRLPVIATLNELDQEALVQILREPKNAL 334
Query: 557 GKQYRKMFQMNG 568
KQY+K+F+M G
Sbjct: 335 VKQYQKLFEMEG 346
>sp|B7JW74|CLPX_CYAP8 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Cyanothece
sp. (strain PCC 8801) GN=clpX PE=3 SV=1
Length = 448
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/313 (56%), Positives = 229/313 (73%), Gaps = 16/313 (5%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
N+ P P+EI K LD++VIGQ+ AKKVLSVAVYNHY R+ S GE +S
Sbjct: 80 NQIPKPREIKKYLDEYVIGQDEAKKVLSVAVYNHYKRL----SLASKPGEETS------- 128
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
+D +EL+KSNILLMGPTGSGKTLLA+TLA+ ++VPF +ADATTLT+AGYVGEDVE+IL +
Sbjct: 129 EDHIELQKSNILLMGPTGSGKTLLAQTLAQILDVPFAVADATTLTEAGYVGEDVENILLR 188
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL V+D +V AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP
Sbjct: 189 LLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPP 248
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502
+G RKHP D IQIDT +ILFICGGAFV ++K I +RR S+GF P N +
Sbjct: 249 QGGRKHPYQDCIQIDTSNILFICGGAFVGLDKVIEQRRGKKSMGFIRPGDTNQ-----SK 303
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ LM+ E DL+ +G+IPEFVGR PV+ SL L E L+ +LT+P+NAL KQY+K
Sbjct: 304 EKRAADLMQQAEPDDLVKFGMIPEFVGRIPVMASLEPLDEETLIAILTQPRNALVKQYQK 363
Query: 563 MFQMNGQAAFYGK 575
+ +M+ + K
Sbjct: 364 LLKMDNVQLEFNK 376
>sp|C3JYJ9|CLPX_PSEFS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
fluorescens (strain SBW25) GN=clpX PE=3 SV=1
Length = 427
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 226/307 (73%), Gaps = 22/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ +Q+ G
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL----NQRDKKG---------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I +R IGF A VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQQRSTRGGIGFSAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYA 339
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 340 KLFEMEG 346
>sp|B7KBH7|CLPX_CYAP7 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Cyanothece
sp. (strain PCC 7424) GN=clpX PE=3 SV=1
Length = 447
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/304 (57%), Positives = 229/304 (75%), Gaps = 15/304 (4%)
Query: 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDD 323
+ P P+EI K LD++VIGQ AKKVLSVAVYNHY R+ + +++ T G D
Sbjct: 79 QIPKPREIKKYLDEYVIGQNEAKKVLSVAVYNHYKRLSDIQAKR---------TGTGATD 129
Query: 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKL 383
D VEL+KSNILLMGPTGSGKTLLA+TLA+ ++VPF +ADATTLT+AGYVGEDVE+IL +L
Sbjct: 130 DPVELQKSNILLMGPTGSGKTLLAQTLAKILDVPFAVADATTLTEAGYVGEDVENILLRL 189
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443
L V+D +V AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +
Sbjct: 190 LQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQ 249
Query: 444 GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503
G RKHP D IQIDT +ILFICGGAFV ++K + +R S+GF P A G +
Sbjct: 250 GGRKHPYQDCIQIDTSNILFICGGAFVGLDKIVEQRLGKKSMGFIRP------AEGTSKE 303
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ L++ +E DL+ +G+IPEFVGR PV+ SL L E+ L+ +LT+P+NAL KQY+K+
Sbjct: 304 KWSADLLKQLEPDDLVKFGMIPEFVGRIPVMASLDPLDEDALIAILTQPRNALVKQYQKL 363
Query: 564 FQMN 567
+M+
Sbjct: 364 LKMD 367
>sp|B0KJG7|CLPX_PSEPG ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain GB-1) GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 225/306 (73%), Gaps = 22/306 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ +Q+ G
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL----NQRDKKG---------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGFGA VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYA 339
Query: 562 KMFQMN 567
K+F+M
Sbjct: 340 KLFEME 345
>sp|Q4ZVM6|CLPX_PSEU2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 226/307 (73%), Gaps = 22/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
+D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 -NDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGF A VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYA 339
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 340 KLFEMEG 346
>sp|A5W634|CLPX_PSEP1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 225/306 (73%), Gaps = 22/306 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ +Q+ G
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL----NQRDKKG---------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGFGA VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYA 339
Query: 562 KMFQMN 567
K+F+M
Sbjct: 340 KLFEME 345
>sp|B1J693|CLPX_PSEPW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain W619) GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 225/306 (73%), Gaps = 22/306 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVLSVAVYNHY R+ +Q+ G
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLSVAVYNHYKRL----NQRDKKG---------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGFGA VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYA 339
Query: 562 KMFQMN 567
++F+M
Sbjct: 340 RLFEME 345
>sp|Q87YR7|CLPX_PSESM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 226/307 (73%), Gaps = 22/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
+D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 -NDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGF A VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYA 339
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 340 KLFEMEG 346
>sp|Q48KY9|CLPX_PSE14 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=clpX PE=3 SV=1
Length = 427
Score = 352 bits (902), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 226/307 (73%), Gaps = 22/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
+D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 -NDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVDKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGF A VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTRGGIGFNAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALIQILTEPKNALTKQYA 339
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 340 KLFEMEG 346
>sp|A1U1Q2|CLPX_MARAV ATP-dependent Clp protease ATP-binding subunit ClpX OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=clpX
PE=3 SV=1
Length = 427
Score = 352 bits (902), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 228/306 (74%), Gaps = 23/306 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
++ PTP EI + L+++VIGQ+RAK VLSVAVYNHY R+ GE S
Sbjct: 65 DRLPTPAEIRETLNEYVIGQDRAKVVLSVAVYNHYKRL--------RYGEGKS------- 109
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ K
Sbjct: 110 --DVELGKSNILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQK 167
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 168 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPP 227
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502
+G RKHP+ + +Q+DT +ILFICGGAF ++K I ER + SSIGF A V++ D
Sbjct: 228 QGGRKHPQQEFLQVDTGNILFICGGAFAGLDKVIQERSERSSIGFSATVKSQ------DD 281
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ T ++ VE+ DL+ +GLIPEFVGR PV+ +L L E LVQ+LTEPKNAL KQY+K
Sbjct: 282 SKSTGDIIREVETEDLVKFGLIPEFVGRLPVVATLTELDEEALVQILTEPKNALTKQYQK 341
Query: 563 MFQMNG 568
+F M G
Sbjct: 342 LFDMEG 347
>sp|Q3K9X0|CLPX_PSEPF ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
fluorescens (strain Pf0-1) GN=clpX PE=3 SV=1
Length = 427
Score = 351 bits (901), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 225/307 (73%), Gaps = 22/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKKA------------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGF A VR+ V
Sbjct: 226 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVG 285
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 286 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYA 339
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 340 KLFEMEG 346
>sp|Q88KI9|CLPX_PSEPK ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
putida (strain KT2440) GN=clpX PE=3 SV=1
Length = 442
Score = 351 bits (901), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/306 (58%), Positives = 225/306 (73%), Gaps = 22/306 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P+PKEI LD++VIGQERAKKVL+VAVYNHY R+ +Q+ G
Sbjct: 77 AHKLPSPKEISGILDQYVIGQERAKKVLAVAVYNHYKRL----NQRDKKG---------- 122
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 123 --DEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 180
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 181 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 240
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +EK I R IGFGA VR+ V
Sbjct: 241 PQGGRKHPQQEFLQVDTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVG 300
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
++ + VE DL+ +GLIPEFVGR PVL +L L E L+Q+LTEPKNAL KQY
Sbjct: 301 ES------LREVEPDDLVKFGLIPEFVGRLPVLATLDELDEAALMQILTEPKNALTKQYA 354
Query: 562 KMFQMN 567
K+F+M
Sbjct: 355 KLFEME 360
>sp|O67356|CLPX_AQUAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex
aeolicus (strain VF5) GN=clpX PE=3 SV=1
Length = 412
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 228/306 (74%), Gaps = 26/306 (8%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P++I K LD++VIGQERAKK+LSVAVYNHY RI + + G+ D
Sbjct: 59 IPKPEQIKKILDEYVIGQERAKKILSVAVYNHYKRIKAKEA--------------GLSLD 104
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VELEKSNILL+GPTGSGKTLLA+TLA+ +NVPF IADAT+LT+AGYVGEDVE++L +LL
Sbjct: 105 DVELEKSNILLIGPTGSGKTLLARTLAKILNVPFAIADATSLTEAGYVGEDVENVLVRLL 164
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLN--ISRDVSGEGVQQALLKMLEGTVVNVPE 442
DY+V AAQ+GIVYIDE+DKI KK+ +N I+RDVSGEGVQQALLK++EG+VVNVP
Sbjct: 165 QACDYDVKAAQKGIVYIDEIDKIAKKS-GINPSITRDVSGEGVQQALLKIVEGSVVNVPP 223
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502
+G RKHP + IQ+DT DILFICGGAFV +E I +R S +GF A ++ +
Sbjct: 224 QGGRKHPHQEFIQVDTTDILFICGGAFVGLEDIIKQRLGKSRVGFEAEIKKVDK------ 277
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
L+E VE DLI +G+IPEF+GRFPV+ +L LTE++LV++L EPKNAL KQY+K
Sbjct: 278 ---EQDLLELVEPDDLIRFGMIPEFIGRFPVIATLRELTEDELVRILVEPKNALVKQYQK 334
Query: 563 MFQMNG 568
+F++ G
Sbjct: 335 LFELEG 340
>sp|Q0VQ89|CLPX_ALCBS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=clpX PE=3 SV=1
Length = 426
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/309 (57%), Positives = 228/309 (73%), Gaps = 26/309 (8%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G + P P EI LD++VIGQERAKKVL+VAVYNHY R+ RS G+
Sbjct: 62 GERLPKPNEIKDTLDEYVIGQERAKKVLAVAVYNHYKRL-------RSGGKGR------- 107
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 108 --DEVELGKSNILLIGPTGSGKTLLAETLARMLNVPFTIADATTLTEAGYVGEDVENIIQ 165
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 166 KLLQKCDYDVDKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 225
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA--NMRAGG 499
+G RKHP+ + +Q+DT ++LFICGGAF ++K I ER + IGF A V++ N R G
Sbjct: 226 PQGGRKHPQQEFLQVDTSNMLFICGGAFAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLG 285
Query: 500 VTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559
L+ VE DL+ YGLIPEF+GR PV+ +L L+E+ L+Q+LTEP+NAL KQ
Sbjct: 286 --------ELLVDVEPEDLVKYGLIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQ 337
Query: 560 YRKMFQMNG 568
Y ++F+M G
Sbjct: 338 YARLFEMEG 346
>sp|A0KYL8|CLPX_SHESA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
sp. (strain ANA-3) GN=clpX PE=3 SV=1
Length = 426
Score = 350 bits (897), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L+EPKNAL KQY
Sbjct: 280 DKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYN 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|Q0HTK8|CLPX_SHESR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
sp. (strain MR-7) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L+EPKNAL KQY
Sbjct: 280 DKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYN 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|Q0HHA2|CLPX_SHESM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
sp. (strain MR-4) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLRNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L+EPKNAL KQY
Sbjct: 280 DKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYN 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|Q9I2U0|CLPX_PSEAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 23/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G+K P PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 GHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D +EL KSNIL++GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 --DDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 164
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 165 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 224
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +E+ I R IGF A VR+ V
Sbjct: 225 PQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVG 284
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
+A + VE DL+ +GLIPEFVGR PV+ +L L E L+Q+LTEPKNAL KQY
Sbjct: 285 EA------FKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYA 338
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 339 KLFEMEG 345
>sp|Q02KU5|CLPX_PSEAB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 23/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G+K P PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 GHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D +EL KSNIL++GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 --DDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 164
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 165 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 224
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +E+ I R IGF A VR+ V
Sbjct: 225 PQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVG 284
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
+A + VE DL+ +GLIPEFVGR PV+ +L L E L+Q+LTEPKNAL KQY
Sbjct: 285 EA------FKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYA 338
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 339 KLFEMEG 345
>sp|B7VB75|CLPX_PSEA8 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
aeruginosa (strain LESB58) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 23/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G+K P PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 GHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D +EL KSNIL++GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 --DDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 164
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 165 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 224
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +E+ I R IGF A VR+ V
Sbjct: 225 PQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVG 284
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
+A + VE DL+ +GLIPEFVGR PV+ +L L E L+Q+LTEPKNAL KQY
Sbjct: 285 EA------FKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYA 338
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 339 KLFEMEG 345
>sp|A6V718|CLPX_PSEA7 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas
aeruginosa (strain PA7) GN=clpX PE=3 SV=1
Length = 426
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 23/307 (7%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
G+K P PKEI LD++VIGQERAKKVL+VAVYNHY R+ N+ +K
Sbjct: 62 GHKLPAPKEIRTILDQYVIGQERAKKVLAVAVYNHYKRL-NQRDKK-------------- 106
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
D +EL KSNIL++GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+
Sbjct: 107 --DDIELGKSNILMIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQ 164
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
KLL DY+V AQ GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 165 KLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVP 224
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT++ILFICGGAF +E+ I R IGF A VR+ V
Sbjct: 225 PQGGRKHPQQEFLQVDTRNILFICGGAFAGLERVIQNRSARGGIGFNAEVRSQEMGKKVG 284
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
+A + VE DL+ +GLIPEFVGR PV+ +L L E L+Q+LTEPKNAL KQY
Sbjct: 285 EA------FKEVEPEDLVKFGLIPEFVGRLPVIATLDELDEAALMQILTEPKNALTKQYA 338
Query: 562 KMFQMNG 568
K+F+M G
Sbjct: 339 KLFEMEG 345
>sp|B2FQR3|CLPX_STRMK ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Stenotrophomonas maltophilia (strain K279a) GN=clpX
PE=3 SV=1
Length = 429
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/304 (58%), Positives = 227/304 (74%), Gaps = 24/304 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI ES QK +D
Sbjct: 66 LPKPREILEVLDQYVIGQNRAKRTLAVAVYNHYKRI--ESRQK---------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I R D SIGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKVLAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMN 567
F+M
Sbjct: 343 FEME 346
>sp|Q60BE7|CLPX2_METCA ATP-dependent Clp protease ATP-binding subunit ClpX 2
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=clpX2 PE=3 SV=1
Length = 428
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 173/306 (56%), Positives = 226/306 (73%), Gaps = 20/306 (6%)
Query: 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGV 321
+K P PKEI K LD++VIGQE+AK++LSVAVYNHY R+ + + +
Sbjct: 62 ADKLPKPKEIKKVLDEYVIGQEKAKRILSVAVYNHYKRLRAQQTHSKK------------ 109
Query: 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILY 381
+ VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF IADATTLT+AGYVGEDVE+I+
Sbjct: 110 --NEVELAKSNILLIGPTGSGKTLLAETLARLLDVPFTIADATTLTEAGYVGEDVENIIQ 167
Query: 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVP 441
K+L DY+V A+QGIVYIDE+DKI++KA++ +I+RDVSGEGVQQALLK++EGTV +VP
Sbjct: 168 KILQKCDYDVEKAEQGIVYIDEIDKISRKADNPSITRDVSGEGVQQALLKLIEGTVASVP 227
Query: 442 EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q++T +ILFICGGAF +EK I R + IGF A V++
Sbjct: 228 PQGGRKHPQQEFLQVNTANILFICGGAFAGLEKIIRSRSEQGGIGFAADVKSK------D 281
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D+ ++ VE+ DLI YGLIPEFVGR PV+ +L L E LV++LTEPKNAL KQYR
Sbjct: 282 DSRNVGEVLADVEAEDLIRYGLIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYR 341
Query: 562 KMFQMN 567
++F+M
Sbjct: 342 RLFEME 347
>sp|B6ISY6|CLPX_RHOCS ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=clpX PE=3 SV=1
Length = 421
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 173/302 (57%), Positives = 227/302 (75%), Gaps = 24/302 (7%)
Query: 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDT 325
P+P++IC LD +VIGQE AK+VLSVAV+NHY R+ + G +
Sbjct: 64 PSPRDICAVLDDYVIGQEHAKRVLSVAVHNHYKRLAH-----------------GAKHND 106
Query: 326 VELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLT 385
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 107 VELAKSNILLIGPTGSGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQ 166
Query: 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGA 445
+DYNV AQ+GIVYIDEVDKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 167 AADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGG 226
Query: 446 RKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505
RKHP+ + +Q+DT +ILFICGGAF +E+ I+ R + +SIGFGA VRA D
Sbjct: 227 RKHPQQEFLQVDTTNILFICGGAFAGLERIIAARGKGTSIGFGADVRA-------PDERR 279
Query: 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565
T ++ VE DL+ +GLIPEFVGR PV+ +L L EN L+++LT+PKNAL KQY+++F+
Sbjct: 280 TGDILREVEPEDLLKFGLIPEFVGRLPVVATLHDLDENALIEILTKPKNALVKQYQRLFE 339
Query: 566 MN 567
M
Sbjct: 340 ME 341
>sp|Q5H433|CLPX_XANOR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
oryzae pv. oryzae (strain KACC10331 / KXO85) GN=clpX
PE=3 SV=1
Length = 428
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 226/305 (74%), Gaps = 24/305 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I +R D+ IGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMNG 568
F M G
Sbjct: 343 FDMEG 347
>sp|Q2P6Y9|CLPX_XANOM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
oryzae pv. oryzae (strain MAFF 311018) GN=clpX PE=3 SV=1
Length = 428
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 226/305 (74%), Gaps = 24/305 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I +R D+ IGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMNG 568
F M G
Sbjct: 343 FDMEG 347
>sp|Q3BWQ0|CLPX_XANC5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=clpX PE=3
SV=1
Length = 428
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 226/305 (74%), Gaps = 24/305 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I +R D+ IGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMNG 568
F M G
Sbjct: 343 FDMEG 347
>sp|Q8PNI4|CLPX_XANAC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=clpX PE=3 SV=1
Length = 428
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 226/305 (74%), Gaps = 24/305 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I +R D+ IGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMNG 568
F M G
Sbjct: 343 FDMEG 347
>sp|Q5ZUE0|CLPX_LEGPH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=clpX PE=3 SV=2
Length = 424
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/315 (56%), Positives = 231/315 (73%), Gaps = 24/315 (7%)
Query: 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDD 323
+ PTPKEI LD++VIGQ+ AKKVLSVAVYNHY R+ ++S +
Sbjct: 62 RLPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKS------------------E 103
Query: 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKL 383
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KL
Sbjct: 104 DGVELGKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKL 163
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443
L DY+V AQQGIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +
Sbjct: 164 LQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQ 223
Query: 444 GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503
G RKHP+ + +Q+DT +ILFICGGAF ++K I ER SSIGF A +++ + D
Sbjct: 224 GGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSS---NDE 280
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
V S ++ +ES DLI YGLIPEFVGR PV+ +L L E L+ +LT PKNAL KQ++ +
Sbjct: 281 V--SKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSL 338
Query: 564 FQMNG-QAAFYGKCF 577
F+M G + F G+
Sbjct: 339 FKMEGSELEFRGEAL 353
>sp|Q8EG18|CLPX_SHEON ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
oneidensis (strain MR-1) GN=clpX PE=3 SV=1
Length = 426
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/307 (58%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L+EPKNAL KQY
Sbjct: 280 DKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYN 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|B4SLN2|CLPX_STRM5 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Stenotrophomonas maltophilia (strain R551-3) GN=clpX
PE=3 SV=1
Length = 429
Score = 348 bits (894), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 178/304 (58%), Positives = 226/304 (74%), Gaps = 24/304 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI ES QK +D
Sbjct: 66 LPKPREILEVLDQYVIGQNRAKRTLAVAVYNHYKRI--ESRQK---------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 EVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTMADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I R D SIGFGA V++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSTDVGSIGFGAKVKSAERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKVLAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMN 567
F+M
Sbjct: 343 FEME 346
>sp|B8EIL3|CLPX_METSB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=clpX PE=3 SV=1
Length = 421
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 178/316 (56%), Positives = 231/316 (73%), Gaps = 25/316 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTPKEICK LD +VIGQ +AK+VLSVAV+NHY R+ + + +
Sbjct: 63 IPTPKEICKVLDDYVIGQPQAKRVLSVAVHNHYKRLNHATKH-----------------N 105
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 106 DVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLL 165
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
SDYNV AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 166 QASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQG 225
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504
RKHP+ + +Q+DT +ILFICGGAF +EK IS R + +SIGFGA V+A D
Sbjct: 226 GRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTRGKGTSIGFGATVQA-------PDDR 278
Query: 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564
T + VE DL+ +GLIPEFVGR PV+ +L L E L ++LTEPKNAL KQY+++F
Sbjct: 279 RTGEIFRKVEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLF 338
Query: 565 QM-NGQAAFYGKCFEI 579
+M N + +F + +
Sbjct: 339 EMENTELSFQDEALNV 354
>sp|Q5WVJ1|CLPX_LEGPL ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Lens) GN=clpX PE=3 SV=1
Length = 424
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 177/305 (58%), Positives = 227/305 (74%), Gaps = 23/305 (7%)
Query: 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDD 323
+ PTPKEI LD++VIGQ+ AKKVLSVAVYNHY R+ ++S +
Sbjct: 62 RLPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKS------------------E 103
Query: 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKL 383
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KL
Sbjct: 104 DGVELGKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKL 163
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443
L DY+V AQQGIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +
Sbjct: 164 LQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQ 223
Query: 444 GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503
G RKHP+ + +Q+DT +ILFICGGAF ++K I ER SSIGF A +++ + D
Sbjct: 224 GGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSS---NDE 280
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
V S ++ +ES DLI YGLIPEFVGR PV+ +L L E L+ +LT PKNAL KQ++ +
Sbjct: 281 V--SKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSL 338
Query: 564 FQMNG 568
F+M G
Sbjct: 339 FKMEG 343
>sp|A5ID16|CLPX_LEGPC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Corby) GN=clpX PE=3 SV=1
Length = 424
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 177/305 (58%), Positives = 227/305 (74%), Gaps = 23/305 (7%)
Query: 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDD 323
+ PTPKEI LD++VIGQ+ AKKVLSVAVYNHY R+ ++S +
Sbjct: 62 RLPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKS------------------E 103
Query: 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKL 383
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KL
Sbjct: 104 DGVELGKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKL 163
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443
L DY+V AQQGIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +
Sbjct: 164 LQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQ 223
Query: 444 GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503
G RKHP+ + +Q+DT +ILFICGGAF ++K I ER SSIGF A +++ + D
Sbjct: 224 GGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSS---NDE 280
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
V S ++ +ES DLI YGLIPEFVGR PV+ +L L E L+ +LT PKNAL KQ++ +
Sbjct: 281 V--SKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSL 338
Query: 564 FQMNG 568
F+M G
Sbjct: 339 FKMEG 343
>sp|Q0AJI3|CLPX_NITEC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Nitrosomonas
eutropha (strain C91) GN=clpX PE=3 SV=1
Length = 427
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 179/304 (58%), Positives = 223/304 (73%), Gaps = 19/304 (6%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTP EIC+ LD++VIGQE AKK+LSVAVYNHY R+ N S K +AG D
Sbjct: 63 LPTPHEICETLDQYVIGQESAKKILSVAVYNHYKRLRNLS--KVNAGS-----------D 109
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
+EL KSNILL+GPTGSGKTLLA+TLAR ++VPFVIADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 110 DIELAKSNILLIGPTGSGKTLLAQTLARLLDVPFVIADATTLTEAGYVGEDVENIIQKLL 169
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
S+++V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGT VP +G
Sbjct: 170 QASNHDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTAALVPPQG 229
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504
RKHP + IQ+DT +ILFICGGAF I+K I R + S IGFGA V D
Sbjct: 230 GRKHPNQEFIQVDTTNILFICGGAFDGIDKIIRARSEKSGIGFGADVINQ------NDRK 283
Query: 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564
+ ++ +E DLI YGLIPEF+GR PV+ +L L E L+Q+L EPKNAL KQY K+F
Sbjct: 284 ELNKILGDIEPEDLIKYGLIPEFIGRLPVVATLRELNEAALIQILIEPKNALVKQYSKLF 343
Query: 565 QMNG 568
M G
Sbjct: 344 SMEG 347
>sp|Q89KG2|CLPX_BRAJA ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium japonicum (strain USDA 110) GN=clpX
PE=3 SV=1
Length = 423
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 177/305 (58%), Positives = 225/305 (73%), Gaps = 28/305 (9%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTPKEICK LD +VIGQ AKKVLSVAV+NHY R+ +++ +
Sbjct: 63 IPTPKEICKVLDDYVIGQSHAKKVLSVAVHNHYKRLNHQTKH-----------------N 105
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 106 DVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLL 165
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
+DYNV AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 166 QAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQG 225
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA--NMRAGGVTD 502
RKHP+ + +Q+DT +ILFICGGAF +EK IS R + +SIGFGA V A + R G
Sbjct: 226 GRKHPQQEFLQVDTTNILFICGGAFAGLEKIISARGRSTSIGFGAQVLAPEDRRTG---- 281
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ VE DL+ YGLIPEFVGR PV+ +L L E L ++LTEPKNAL KQY++
Sbjct: 282 -----EIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLKKILTEPKNALVKQYQR 336
Query: 563 MFQMN 567
+F+M
Sbjct: 337 LFEME 341
>sp|A1RL88|CLPX_SHESW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
sp. (strain W3-18-1) GN=clpX PE=3 SV=1
Length = 426
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L++PKNAL KQY
Sbjct: 280 DKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYS 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|A4Y5I3|CLPX_SHEPC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpX PE=3
SV=1
Length = 426
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 221/307 (71%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
+K PTP E+ LD +VIGQ+RAKKVLSVAVYNHY R+ N S +
Sbjct: 63 DKLPTPHELRAHLDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARSLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R S IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRAHVGSGIGFGAQVK------GEK 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S + VE DL+ YGLIPEF+GR PV+ +L L E LVQ+L++PKNAL KQY
Sbjct: 280 DKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYS 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|B0JL96|CLPX_MICAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Microcystis
aeruginosa (strain NIES-843) GN=clpX PE=3 SV=1
Length = 444
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 174/319 (54%), Positives = 228/319 (71%), Gaps = 20/319 (6%)
Query: 249 SGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKR 308
SG W + P P+EI K LD +VIGQ AKKVLSVAVYNHY R+ + +QK
Sbjct: 66 SGQNKTTW------EQIPKPREIKKHLDDYVIGQNEAKKVLSVAVYNHYKRLKDIQTQKA 119
Query: 309 SAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ 368
G +D++EL+KSNILL+GPTGSGKTLLA+TLA+ ++VPF +ADATTLT+
Sbjct: 120 GGGSP---------EDSIELQKSNILLIGPTGSGKTLLAQTLAKILDVPFAVADATTLTE 170
Query: 369 AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428
AGYVGEDVE+IL +LL V+D +V AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQA
Sbjct: 171 AGYVGEDVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQA 230
Query: 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488
LLKMLEGT+ NVP +G RKHP D IQIDT +ILFICGGAFV ++K I +R S+GF
Sbjct: 231 LLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDKVIDQRLGKKSMGFI 290
Query: 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQV 548
P G + V + L++ + DL+ +G+IPEFVGR P+L +L L E L+ +
Sbjct: 291 QP-----GDGQASKDKVAAGLLKQMTPDDLVKFGMIPEFVGRIPILAALSPLDEEALIAI 345
Query: 549 LTEPKNALGKQYRKMFQMN 567
LT+P+NAL KQY+K+ +M+
Sbjct: 346 LTQPRNALVKQYQKLLKMD 364
>sp|B2SMI2|CLPX_XANOP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
oryzae pv. oryzae (strain PXO99A) GN=clpX PE=3 SV=1
Length = 428
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/305 (57%), Positives = 225/305 (73%), Gaps = 24/305 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 DVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I +R D+ IGFG V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRSNDAGGIGFGVKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMNG 568
F M G
Sbjct: 343 FDMEG 347
>sp|Q5X452|CLPX_LEGPA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Legionella
pneumophila (strain Paris) GN=clpX PE=3 SV=1
Length = 424
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/305 (57%), Positives = 225/305 (73%), Gaps = 23/305 (7%)
Query: 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDD 323
+ PTPKEI LD++VIGQ+ AKKVLSVAVYNHY R+ ++S +
Sbjct: 62 RLPTPKEISNFLDEYVIGQQHAKKVLSVAVYNHYKRLQHKS------------------E 103
Query: 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKL 383
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF +ADATTLT+AGYVGEDVE+I+ KL
Sbjct: 104 DGVELGKSNILLIGPTGSGKTLLAQTLARILNVPFAMADATTLTEAGYVGEDVENIIQKL 163
Query: 384 LTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443
L DY+V AQQGIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +
Sbjct: 164 LQKCDYDVDKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQ 223
Query: 444 GARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503
G RKHP+ + +Q+DT +ILFICGGAF ++K I ER SSIGF A +++ +
Sbjct: 224 GGRKHPQQEFLQVDTSNILFICGGAFAGLDKVIRERSDKSSIGFSAQLKSKKSSND---- 279
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
S ++ +ES DLI YGLIPEFVGR PV+ +L L E L+ +LT PKNAL KQ++ +
Sbjct: 280 -EASKVLGQLESDDLIKYGLIPEFVGRLPVVTTLQELDEAALIDILTRPKNALTKQFQSL 338
Query: 564 FQMNG 568
F+M G
Sbjct: 339 FKMEG 343
>sp|A1K782|CLPX_AZOSB ATP-dependent Clp protease ATP-binding subunit ClpX OS=Azoarcus sp.
(strain BH72) GN=clpX PE=3 SV=1
Length = 422
Score = 347 bits (890), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 182/324 (56%), Positives = 232/324 (71%), Gaps = 35/324 (10%)
Query: 248 GSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQK 307
GS +G G K PTP EIC+ LD++VIGQ +AK+ LSVAVYNHY R+ + S ++
Sbjct: 53 GSVETEGVKG------KLPTPHEICQILDQYVIGQAQAKRNLSVAVYNHYKRLRHLSGRQ 106
Query: 308 RSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367
D VEL KSNILL+GPTGSGKTLLA+TLAR +NVPFV+ADATTLT
Sbjct: 107 ----------------DEVELSKSNILLIGPTGSGKTLLAQTLARLLNVPFVMADATTLT 150
Query: 368 QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427
+AGYVGEDVE+I+ KLL DY+V AQQGIVYIDE+DKI++K+++ +I+RDVSGEGVQQ
Sbjct: 151 EAGYVGEDVENIIQKLLQKCDYDVEKAQQGIVYIDEIDKISRKSDNPSITRDVSGEGVQQ 210
Query: 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487
ALLK++EGT+ ++P +G RKHP D IQ+DT ++LFICGGAF ++K I R + IGF
Sbjct: 211 ALLKLIEGTIASIPPQGGRKHPNQDFIQVDTTNVLFICGGAFDGLDKVIRNRTEKMGIGF 270
Query: 488 GAPVRANMRAGGVTDAVVTSSLMET---VESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544
GA V++ R G +L ET VE DL+ +GLIPEFVGR PV+ +L L E+
Sbjct: 271 GAEVKS--RQG--------KNLTETFRQVEPEDLVKFGLIPEFVGRLPVVATLQELDEDA 320
Query: 545 LVQVLTEPKNALGKQYRKMFQMNG 568
L+Q+L EPKNAL KQY+K+F M G
Sbjct: 321 LIQILIEPKNALVKQYQKLFSMEG 344
>sp|A5EKA7|CLPX_BRASB ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=clpX PE=3 SV=1
Length = 424
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/305 (58%), Positives = 224/305 (73%), Gaps = 28/305 (9%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTPKEICK LD +VIGQ AKKVLSVAV+NHY R+ +++
Sbjct: 63 IPTPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKHS----------------- 105
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 106 DVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLL 165
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
+DYNV AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 166 QAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQG 225
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA--NMRAGGVTD 502
RKHP+ + +Q+DT +ILFICGGAF +EK IS R + +SIGF A V A + R G
Sbjct: 226 GRKHPQQEFLQVDTTNILFICGGAFSGLEKIISARGRSTSIGFAAQVLAPEDRRTG---- 281
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ VE DL+ YGLIPEFVGR PV+ +L L EN L ++LTEPKNAL KQY++
Sbjct: 282 -----EIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTEPKNALVKQYQR 336
Query: 563 MFQMN 567
+F+M
Sbjct: 337 LFEME 341
>sp|B3Q7P4|CLPX_RHOPT ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpX
PE=3 SV=1
Length = 424
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 225/305 (73%), Gaps = 28/305 (9%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTPKEICK LD +VIGQ AKKVLSVAV+NHY R+ +++ +
Sbjct: 63 IPTPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKH-----------------N 105
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 106 DVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLL 165
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
+DYNV AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 166 QAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQG 225
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA--NMRAGGVTD 502
RKHP+ + +Q+DT +ILFICGGAF +EK IS R + +SIGF A V A + R G
Sbjct: 226 GRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRTTSIGFAAQVLAPEDRRTG---- 281
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ VE DL+ YGLIPEFVGR PV+ +L L EN L ++LT+PKNAL KQY++
Sbjct: 282 -----EIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQR 336
Query: 563 MFQMN 567
+F+M
Sbjct: 337 LFEME 341
>sp|Q6N5L4|CLPX_RHOPA ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=clpX PE=3 SV=1
Length = 424
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/305 (57%), Positives = 225/305 (73%), Gaps = 28/305 (9%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
PTPKEICK LD +VIGQ AKKVLSVAV+NHY R+ +++ +
Sbjct: 63 IPTPKEICKVLDDYVIGQNHAKKVLSVAVHNHYKRLNHQTKH-----------------N 105
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR ++VPF +ADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 106 DVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLL 165
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
+DYNV AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 166 QAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQG 225
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA--NMRAGGVTD 502
RKHP+ + +Q+DT +ILFICGGAF +EK IS R + +SIGF A V A + R G
Sbjct: 226 GRKHPQQEFLQVDTTNILFICGGAFAGLEKIISSRGRTTSIGFAAQVLAPEDRRTG---- 281
Query: 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562
+ VE DL+ YGLIPEFVGR PV+ +L L EN L ++LT+PKNAL KQY++
Sbjct: 282 -----EIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDENSLKKILTDPKNALVKQYQR 336
Query: 563 MFQMN 567
+F+M
Sbjct: 337 LFEME 341
>sp|A3QFX5|CLPX_SHELP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=clpX PE=3 SV=1
Length = 426
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 223/307 (72%), Gaps = 24/307 (7%)
Query: 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVD 322
++ PTP E+ LD +VIGQE+AKKVLSVAVYNHY R+ N + +
Sbjct: 63 DRLPTPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNATPK---------------- 106
Query: 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYK 382
D VEL KSNILL+GPTGSGKTLLA+TLAR++NVPF +ADATTLT+AGYVGEDVE+I+ K
Sbjct: 107 -DGVELGKSNILLIGPTGSGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQK 165
Query: 383 LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442
LL DY+V AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV VP
Sbjct: 166 LLQKCDYDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 225
Query: 443 KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ-DSSIGFGAPVRANMRAGGVT 501
+G RKHP+ + +Q+DT ILFICGGAF +EK I +R + IGFGA V+ G
Sbjct: 226 QGGRKHPQQEFLQVDTSKILFICGGAFAGLEKVIEQRSHVGTGIGFGAEVK------GEA 279
Query: 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561
D S ++ VE DL+ YGLIPEF+GR PVL +L L E L+Q+L+EPKNAL KQ+
Sbjct: 280 DKATISDVLLQVEPEDLVKYGLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFA 339
Query: 562 KMFQMNG 568
+F+M G
Sbjct: 340 ALFEMEG 346
>sp|Q8PBY5|CLPX_XANCP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=clpX PE=3 SV=1
Length = 428
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/304 (57%), Positives = 225/304 (74%), Gaps = 24/304 (7%)
Query: 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD 324
P P+EI + LD++VIGQ RAK+ L+VAVYNHY RI + S +D
Sbjct: 66 LPKPREILEVLDQYVIGQLRAKRTLAVAVYNHYKRIESRSK-----------------ND 108
Query: 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL 384
VEL KSNILL+GPTGSGKTLLA+TLAR +NVPF IADATTLT+AGYVGEDVE+I+ KLL
Sbjct: 109 EVELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVENIIQKLL 168
Query: 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444
DY+V AQQGIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G
Sbjct: 169 QKCDYDVEKAQQGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQG 228
Query: 445 ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS-SIGFGAPVRANMRAGGVTDA 503
RKHP+ + +Q+DTK+ILFICGGAF ++K I R D+ IGFGA V+++ R V
Sbjct: 229 GRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQARSNDAGGIGFGAKVKSSERKQEV--- 285
Query: 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKM 563
++ VE DLI +GLIPEFVGR PV+ +L L E L+++LTEPKNA+ KQ++K+
Sbjct: 286 ---GKILAEVEPEDLIKFGLIPEFVGRLPVVATLEELDEPALIKILTEPKNAITKQFKKL 342
Query: 564 FQMN 567
F+M
Sbjct: 343 FEME 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,612,538
Number of Sequences: 539616
Number of extensions: 9470075
Number of successful extensions: 54476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1661
Number of HSP's successfully gapped in prelim test: 806
Number of HSP's that attempted gapping in prelim test: 48409
Number of HSP's gapped (non-prelim): 4351
length of query: 581
length of database: 191,569,459
effective HSP length: 123
effective length of query: 458
effective length of database: 125,196,691
effective search space: 57340084478
effective search space used: 57340084478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)