Query 008014
Match_columns 581
No_of_seqs 356 out of 3356
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 2.1E-55 4.5E-60 461.2 26.8 367 209-579 80-481 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 1.5E-53 3.3E-58 434.2 21.5 294 263-579 47-340 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 5.6E-42 1.2E-46 369.1 26.2 292 265-578 59-350 (412)
4 TIGR00382 clpX endopeptidase C 100.0 8.7E-41 1.9E-45 358.9 25.2 294 264-579 64-357 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 3.6E-35 7.8E-40 313.4 20.2 237 266-579 1-372 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 1.5E-34 3.2E-39 308.9 20.5 237 266-579 4-374 (443)
7 COG1220 HslU ATP-dependent pro 100.0 5.4E-31 1.2E-35 271.0 19.4 238 265-579 3-375 (444)
8 COG1222 RPT1 ATP-dependent 26S 99.9 2E-26 4.4E-31 239.4 13.8 213 278-552 152-368 (406)
9 COG0542 clpA ATP-binding subun 99.9 7.7E-26 1.7E-30 256.3 19.3 244 255-578 465-726 (786)
10 KOG0738 AAA+-type ATPase [Post 99.9 1.4E-24 3E-29 227.1 19.8 223 278-562 213-438 (491)
11 PRK11034 clpA ATP-dependent Cl 99.9 1.6E-23 3.5E-28 240.4 18.5 241 255-578 432-687 (758)
12 KOG0730 AAA+-type ATPase [Post 99.9 3.8E-23 8.2E-28 227.8 15.6 168 278-494 435-606 (693)
13 KOG0733 Nuclear AAA ATPase (VC 99.9 3.8E-23 8.1E-28 225.4 14.6 221 278-560 512-737 (802)
14 KOG0734 AAA+-type ATPase conta 99.9 3.2E-23 7E-28 223.1 12.4 220 267-551 294-516 (752)
15 KOG0736 Peroxisome assembly fa 99.9 7.4E-23 1.6E-27 227.6 15.2 216 278-554 673-893 (953)
16 CHL00095 clpC Clp protease ATP 99.9 5.4E-22 1.2E-26 230.9 21.3 253 255-578 483-753 (821)
17 TIGR02639 ClpA ATP-dependent C 99.9 2.6E-22 5.7E-27 231.0 18.4 240 256-578 429-683 (731)
18 KOG0739 AAA+-type ATPase [Post 99.9 1.9E-22 4.1E-27 205.4 14.4 166 278-493 134-302 (439)
19 KOG0731 AAA+-type ATPase conta 99.9 2.5E-22 5.4E-27 226.6 14.1 171 278-494 312-486 (774)
20 COG1223 Predicted ATPase (AAA+ 99.9 9.7E-22 2.1E-26 197.3 11.6 168 277-494 121-288 (368)
21 KOG0733 Nuclear AAA ATPase (VC 99.9 3.3E-21 7.2E-26 210.3 13.4 171 278-494 191-365 (802)
22 KOG0727 26S proteasome regulat 99.9 5.3E-21 1.2E-25 191.3 13.7 171 278-494 156-330 (408)
23 TIGR03345 VI_ClpV1 type VI sec 99.8 1.3E-20 2.9E-25 219.5 18.6 245 255-578 540-802 (852)
24 COG0465 HflB ATP-dependent Zn 99.8 3.4E-21 7.4E-26 213.9 12.5 171 278-494 151-324 (596)
25 PF07724 AAA_2: AAA domain (Cd 99.8 4.3E-21 9.2E-26 184.5 9.4 165 330-534 3-171 (171)
26 KOG0728 26S proteasome regulat 99.8 8.3E-21 1.8E-25 189.7 8.8 170 278-494 148-322 (404)
27 TIGR03346 chaperone_ClpB ATP-d 99.8 4.8E-19 1E-23 207.0 20.4 241 255-578 539-797 (852)
28 COG0464 SpoVK ATPases of the A 99.8 3.5E-19 7.6E-24 196.3 16.0 221 278-560 243-466 (494)
29 KOG0729 26S proteasome regulat 99.8 5.3E-20 1.1E-24 185.3 7.8 174 277-494 177-352 (435)
30 TIGR01241 FtsH_fam ATP-depende 99.8 9.6E-19 2.1E-23 193.3 17.5 170 278-494 56-229 (495)
31 PRK10865 protein disaggregatio 99.8 2E-18 4.4E-23 201.7 20.2 241 255-578 542-800 (857)
32 CHL00181 cbbX CbbX; Provisiona 99.8 1.6E-18 3.4E-23 179.5 16.9 193 264-554 10-210 (287)
33 KOG0735 AAA+-type ATPase [Post 99.8 5E-19 1.1E-23 195.9 13.7 168 278-494 668-839 (952)
34 TIGR01243 CDC48 AAA family ATP 99.8 1.1E-18 2.4E-23 201.2 17.2 216 278-559 454-675 (733)
35 PF05496 RuvB_N: Holliday junc 99.8 1.7E-18 3.6E-23 172.5 15.2 168 274-551 22-190 (233)
36 PTZ00454 26S protease regulato 99.8 3E-18 6.4E-23 184.8 16.2 171 278-494 146-320 (398)
37 TIGR02880 cbbX_cfxQ probable R 99.8 6.3E-18 1.4E-22 174.6 17.9 194 264-555 9-210 (284)
38 COG0466 Lon ATP-dependent Lon 99.8 5E-18 1.1E-22 189.2 17.3 167 254-471 302-477 (782)
39 KOG0726 26S proteasome regulat 99.8 4.3E-19 9.3E-24 180.6 8.1 171 278-494 186-360 (440)
40 KOG0652 26S proteasome regulat 99.8 1.4E-18 3.1E-23 174.7 10.9 170 278-494 172-346 (424)
41 PLN00020 ribulose bisphosphate 99.8 8.4E-18 1.8E-22 177.6 17.1 151 330-494 148-302 (413)
42 PRK03992 proteasome-activating 99.8 7.4E-18 1.6E-22 181.2 16.2 171 278-494 132-306 (389)
43 TIGR02881 spore_V_K stage V sp 99.8 2E-17 4.2E-22 168.3 18.3 183 272-553 2-191 (261)
44 CHL00195 ycf46 Ycf46; Provisio 99.8 1.4E-17 3E-22 183.6 17.9 166 278-494 229-396 (489)
45 KOG1051 Chaperone HSP104 and r 99.8 5.9E-18 1.3E-22 194.7 15.5 252 253-577 534-804 (898)
46 KOG2004 Mitochondrial ATP-depe 99.8 1.3E-17 2.8E-22 185.1 16.5 212 254-528 390-611 (906)
47 KOG0737 AAA+-type ATPase [Post 99.7 1.6E-17 3.4E-22 174.0 15.9 237 264-562 80-317 (386)
48 TIGR00763 lon ATP-dependent pr 99.7 2.2E-17 4.8E-22 191.4 18.8 218 254-578 299-527 (775)
49 TIGR03689 pup_AAA proteasome A 99.7 9E-18 2E-22 185.4 13.3 173 278-494 183-369 (512)
50 PTZ00361 26 proteosome regulat 99.7 2.8E-17 6.1E-22 178.9 16.5 171 278-494 184-358 (438)
51 PRK10787 DNA-binding ATP-depen 99.7 1E-16 2.2E-21 185.5 19.3 221 253-578 300-528 (784)
52 KOG0740 AAA+-type ATPase [Post 99.7 1.5E-17 3.3E-22 178.7 10.2 219 277-560 153-375 (428)
53 CHL00176 ftsH cell division pr 99.7 5.9E-17 1.3E-21 183.6 15.4 170 278-494 184-357 (638)
54 PRK10733 hflB ATP-dependent me 99.7 4.1E-16 8.9E-21 177.5 17.3 182 267-494 143-326 (644)
55 TIGR01242 26Sp45 26S proteasom 99.7 3.4E-16 7.4E-21 166.5 15.5 171 278-494 123-297 (364)
56 COG2255 RuvB Holliday junction 99.7 5.9E-16 1.3E-20 157.7 15.5 170 274-552 24-193 (332)
57 KOG0651 26S proteasome regulat 99.6 3.2E-16 6.9E-21 161.0 9.7 173 278-494 133-307 (388)
58 COG2256 MGS1 ATPase related to 99.6 2.9E-15 6.2E-20 158.7 13.2 83 331-436 49-131 (436)
59 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.4E-15 5.2E-20 181.1 13.1 135 329-493 1629-1807(2281)
60 COG3604 FhlA Transcriptional r 99.6 2.5E-15 5.4E-20 162.5 10.5 157 278-490 224-387 (550)
61 PF00004 AAA: ATPase family as 99.6 2.6E-15 5.6E-20 134.2 8.7 129 333-488 1-131 (132)
62 TIGR01243 CDC48 AAA family ATP 99.6 2.3E-14 4.9E-19 165.6 17.0 167 279-494 180-350 (733)
63 KOG0741 AAA+-type ATPase [Post 99.6 3E-15 6.6E-20 162.0 7.6 141 331-493 257-404 (744)
64 COG0714 MoxR-like ATPases [Gen 99.6 1.3E-14 2.8E-19 152.5 12.0 176 267-493 14-194 (329)
65 KOG0732 AAA+-type ATPase conta 99.5 8E-15 1.7E-19 170.2 9.1 168 278-494 266-442 (1080)
66 KOG0730 AAA+-type ATPase [Post 99.5 2.1E-14 4.6E-19 159.2 11.2 168 277-494 184-355 (693)
67 KOG0744 AAA+-type ATPase [Post 99.5 3.7E-14 8E-19 146.6 11.6 141 330-493 177-330 (423)
68 PF00158 Sigma54_activat: Sigm 99.5 4.5E-14 9.7E-19 135.6 11.3 145 279-486 1-159 (168)
69 COG3829 RocR Transcriptional r 99.5 2.8E-14 6.1E-19 156.0 10.8 158 278-491 246-411 (560)
70 TIGR02639 ClpA ATP-dependent C 99.5 6.1E-14 1.3E-18 162.0 13.1 185 274-579 180-375 (731)
71 COG2204 AtoC Response regulato 99.5 3E-14 6.6E-19 155.2 9.8 161 276-492 140-307 (464)
72 TIGR00635 ruvB Holliday juncti 99.5 5.9E-13 1.3E-17 137.5 17.5 105 279-438 6-110 (305)
73 PRK00080 ruvB Holliday junctio 99.5 7.6E-13 1.7E-17 139.0 17.4 156 279-493 27-183 (328)
74 KOG0991 Replication factor C, 99.5 1.6E-13 3.4E-18 136.8 9.9 201 278-561 28-246 (333)
75 PF07726 AAA_3: ATPase family 99.5 1.3E-14 2.8E-19 133.4 1.0 107 332-457 1-108 (131)
76 TIGR01650 PD_CobS cobaltochela 99.5 2.6E-13 5.6E-18 142.5 10.9 116 331-469 65-187 (327)
77 TIGR02640 gas_vesic_GvpN gas v 99.4 1.3E-12 2.8E-17 133.6 14.5 141 331-490 22-187 (262)
78 PF01078 Mg_chelatase: Magnesi 99.4 1.5E-13 3.2E-18 135.8 7.3 184 278-544 4-206 (206)
79 TIGR02974 phageshock_pspF psp 99.4 1.1E-12 2.3E-17 138.5 12.7 149 279-483 1-156 (329)
80 TIGR03345 VI_ClpV1 type VI sec 99.4 1.2E-12 2.5E-17 153.5 14.0 185 274-579 185-380 (852)
81 KOG0742 AAA+-type ATPase [Post 99.4 2E-12 4.2E-17 137.1 13.7 184 330-550 384-571 (630)
82 PRK13342 recombination factor 99.4 2.8E-12 6.1E-17 139.0 15.1 82 331-435 37-118 (413)
83 PRK07003 DNA polymerase III su 99.4 2.7E-12 5.9E-17 146.1 13.9 105 278-435 17-145 (830)
84 PRK13531 regulatory ATPase Rav 99.4 5.6E-12 1.2E-16 138.3 14.7 123 268-440 11-138 (498)
85 TIGR02902 spore_lonB ATP-depen 99.4 6E-12 1.3E-16 140.7 15.0 117 278-440 66-206 (531)
86 PF07728 AAA_5: AAA domain (dy 99.4 3.6E-13 7.9E-18 123.3 4.2 124 332-471 1-125 (139)
87 TIGR01817 nifA Nif-specific re 99.4 3.1E-12 6.8E-17 142.8 12.3 176 278-551 197-382 (534)
88 PRK10865 protein disaggregatio 99.4 4E-12 8.7E-17 149.2 13.6 118 274-434 176-304 (857)
89 PLN03025 replication factor C 99.4 5.2E-12 1.1E-16 132.3 13.1 105 279-434 15-124 (319)
90 KOG0989 Replication factor C, 99.4 1.4E-11 3.1E-16 127.0 15.4 110 278-434 37-154 (346)
91 PRK11034 clpA ATP-dependent Cl 99.3 4.5E-12 9.7E-17 146.5 12.8 184 274-578 184-378 (758)
92 PRK13407 bchI magnesium chelat 99.3 5.2E-12 1.1E-16 133.7 12.2 138 278-469 9-180 (334)
93 PRK14956 DNA polymerase III su 99.3 8.3E-12 1.8E-16 137.1 14.1 105 278-435 19-147 (484)
94 PRK14962 DNA polymerase III su 99.3 8.9E-12 1.9E-16 137.4 14.5 104 278-434 15-142 (472)
95 PRK12323 DNA polymerase III su 99.3 4.6E-12 1E-16 142.7 12.2 139 278-492 17-185 (700)
96 PRK11608 pspF phage shock prot 99.3 1E-11 2.2E-16 130.9 13.7 148 278-481 7-161 (326)
97 CHL00095 clpC Clp protease ATP 99.3 8.8E-12 1.9E-16 145.9 13.9 114 278-434 180-304 (821)
98 CHL00081 chlI Mg-protoporyphyr 99.3 7E-12 1.5E-16 133.2 11.9 137 278-469 18-196 (350)
99 COG1221 PspF Transcriptional r 99.3 8.4E-12 1.8E-16 134.2 12.2 147 276-478 77-231 (403)
100 PRK07994 DNA polymerase III su 99.3 1.8E-11 3.8E-16 139.0 14.9 104 278-435 17-145 (647)
101 PRK14958 DNA polymerase III su 99.3 1.1E-11 2.3E-16 138.0 12.9 105 278-435 17-145 (509)
102 PRK14949 DNA polymerase III su 99.3 2.2E-11 4.7E-16 141.0 15.2 104 278-435 17-145 (944)
103 KOG2028 ATPase related to the 99.3 1.8E-11 3.9E-16 128.5 12.8 83 331-436 163-249 (554)
104 PRK15424 propionate catabolism 99.3 3.2E-11 7E-16 134.8 15.8 152 279-486 221-388 (538)
105 PRK05022 anaerobic nitric oxid 99.3 2.1E-11 4.5E-16 135.7 14.0 148 278-481 188-342 (509)
106 PRK14960 DNA polymerase III su 99.3 1.9E-11 4.2E-16 137.9 13.8 105 278-435 16-144 (702)
107 TIGR03346 chaperone_ClpB ATP-d 99.3 1.8E-11 3.8E-16 143.9 13.0 184 274-578 171-365 (852)
108 PRK14961 DNA polymerase III su 99.3 5.2E-11 1.1E-15 127.2 15.1 105 278-435 17-145 (363)
109 TIGR02030 BchI-ChlI magnesium 99.3 2.4E-11 5.3E-16 128.7 12.3 137 278-468 5-182 (337)
110 PRK13341 recombination factor 99.3 4.8E-11 1E-15 137.5 15.7 82 331-435 53-135 (725)
111 PRK07764 DNA polymerase III su 99.3 4.1E-11 8.8E-16 139.7 14.4 104 278-435 16-146 (824)
112 TIGR02329 propionate_PrpR prop 99.3 8E-11 1.7E-15 131.5 16.1 149 279-483 214-370 (526)
113 PRK07940 DNA polymerase III su 99.3 5.2E-11 1.1E-15 128.7 13.7 152 278-494 6-180 (394)
114 smart00350 MCM minichromosome 99.3 4.3E-11 9.4E-16 133.2 13.4 199 269-551 195-398 (509)
115 PRK11388 DNA-binding transcrip 99.2 8.4E-11 1.8E-15 134.0 15.5 147 278-483 326-479 (638)
116 PRK14964 DNA polymerase III su 99.2 8.2E-11 1.8E-15 130.1 14.2 105 278-435 14-142 (491)
117 TIGR02442 Cob-chelat-sub cobal 99.2 4.5E-11 9.7E-16 136.4 12.4 136 278-468 5-177 (633)
118 PRK06645 DNA polymerase III su 99.2 9.4E-11 2E-15 130.2 14.3 104 278-434 22-153 (507)
119 PHA02544 44 clamp loader, smal 99.2 2.4E-10 5.3E-15 118.6 16.3 105 278-434 22-126 (316)
120 PHA02244 ATPase-like protein 99.2 2.4E-10 5.2E-15 121.9 16.3 109 331-469 120-230 (383)
121 PRK14951 DNA polymerase III su 99.2 8E-11 1.7E-15 133.3 13.5 105 278-435 17-150 (618)
122 PRK08691 DNA polymerase III su 99.2 6.9E-11 1.5E-15 134.3 12.6 105 278-435 17-145 (709)
123 PRK14952 DNA polymerase III su 99.2 1E-10 2.2E-15 131.8 13.8 104 278-435 14-144 (584)
124 TIGR00368 Mg chelatase-related 99.2 4.1E-11 8.9E-16 133.0 10.3 178 278-547 193-398 (499)
125 KOG0743 AAA+-type ATPase [Post 99.2 2.1E-10 4.6E-15 123.7 15.2 222 279-568 203-435 (457)
126 PRK14957 DNA polymerase III su 99.2 1.3E-10 2.9E-15 129.9 14.3 105 278-435 17-145 (546)
127 PRK14959 DNA polymerase III su 99.2 1.5E-10 3.2E-15 130.8 13.8 140 278-493 17-181 (624)
128 PRK15429 formate hydrogenlyase 99.2 2.3E-10 4.9E-15 131.7 15.3 150 278-483 377-533 (686)
129 TIGR02903 spore_lon_C ATP-depe 99.2 2.2E-10 4.7E-15 130.3 14.6 117 278-440 155-296 (615)
130 PRK10820 DNA-binding transcrip 99.2 4.7E-10 1E-14 125.3 16.9 150 278-483 205-361 (520)
131 PRK04195 replication factor C 99.2 2.5E-10 5.5E-15 126.2 14.6 110 279-434 16-127 (482)
132 PRK14969 DNA polymerase III su 99.2 1.7E-10 3.8E-15 129.0 11.9 105 278-435 17-145 (527)
133 PRK14963 DNA polymerase III su 99.1 4.8E-10 1E-14 124.8 14.6 103 278-434 15-141 (504)
134 PRK14965 DNA polymerase III su 99.1 2.8E-10 6E-15 128.6 12.7 105 278-435 17-145 (576)
135 COG0606 Predicted ATPase with 99.1 1E-10 2.2E-15 127.1 8.5 182 278-546 180-385 (490)
136 COG0542 clpA ATP-binding subun 99.1 5.9E-10 1.3E-14 127.9 14.8 194 267-581 161-365 (786)
137 PRK05563 DNA polymerase III su 99.1 6.4E-10 1.4E-14 125.2 13.9 105 278-435 17-145 (559)
138 PRK12402 replication factor C 99.1 1E-09 2.2E-14 114.3 14.4 110 279-434 17-150 (337)
139 PRK07133 DNA polymerase III su 99.1 7.7E-10 1.7E-14 126.7 14.6 112 278-435 19-144 (725)
140 TIGR02397 dnaX_nterm DNA polym 99.1 7.8E-10 1.7E-14 116.3 13.3 104 278-434 15-142 (355)
141 PRK05896 DNA polymerase III su 99.1 7.6E-10 1.6E-14 124.6 13.9 141 278-494 17-182 (605)
142 PTZ00111 DNA replication licen 99.1 7.2E-10 1.6E-14 128.8 13.9 203 271-550 444-654 (915)
143 PRK06305 DNA polymerase III su 99.1 1.5E-09 3.2E-14 119.4 15.6 104 278-434 18-146 (451)
144 PRK14955 DNA polymerase III su 99.1 6.2E-10 1.4E-14 120.3 12.4 112 278-434 17-152 (397)
145 PRK14948 DNA polymerase III su 99.1 1.3E-09 2.9E-14 123.9 14.5 112 278-435 17-147 (620)
146 PRK14970 DNA polymerase III su 99.0 3.4E-09 7.3E-14 112.9 15.0 109 278-434 18-133 (367)
147 PRK08451 DNA polymerase III su 99.0 2.1E-09 4.6E-14 120.0 13.8 105 278-435 15-143 (535)
148 TIGR02031 BchD-ChlD magnesium 99.0 9.4E-10 2E-14 124.6 11.2 116 331-469 17-136 (589)
149 PRK09111 DNA polymerase III su 99.0 2.4E-09 5.2E-14 121.3 14.3 110 278-435 25-158 (598)
150 PRK06647 DNA polymerase III su 99.0 2.2E-09 4.7E-14 121.0 13.9 104 278-434 17-144 (563)
151 cd00009 AAA The AAA+ (ATPases 99.0 3.6E-09 7.8E-14 93.9 12.0 87 331-434 20-109 (151)
152 PRK14950 DNA polymerase III su 99.0 3.3E-09 7.2E-14 120.1 14.3 105 278-435 17-146 (585)
153 smart00763 AAA_PrkA PrkA AAA d 99.0 1.5E-09 3.3E-14 115.5 10.7 63 275-363 49-118 (361)
154 COG0470 HolB ATPase involved i 99.0 1.8E-09 3.9E-14 111.4 11.1 122 331-493 24-171 (325)
155 PRK10923 glnG nitrogen regulat 99.0 4.6E-09 1E-13 115.0 14.8 125 331-481 162-293 (469)
156 TIGR02915 PEP_resp_reg putativ 99.0 2.5E-09 5.3E-14 116.3 12.5 127 331-483 163-296 (445)
157 PRK14953 DNA polymerase III su 99.0 3.7E-09 8E-14 117.3 13.8 141 278-493 17-181 (486)
158 TIGR00764 lon_rel lon-related 99.0 2.9E-09 6.4E-14 121.0 13.1 50 274-357 15-64 (608)
159 PRK14954 DNA polymerase III su 99.0 4.9E-09 1.1E-13 119.2 14.8 113 278-435 17-153 (620)
160 PRK09862 putative ATP-dependen 99.0 1.7E-09 3.6E-14 120.2 10.2 164 331-546 211-394 (506)
161 PRK00411 cdc6 cell division co 99.0 1.3E-08 2.9E-13 108.7 16.5 61 278-366 31-96 (394)
162 PF05673 DUF815: Protein of un 99.0 9.5E-09 2.1E-13 104.2 14.4 174 278-551 28-205 (249)
163 TIGR02928 orc1/cdc6 family rep 99.0 5.9E-09 1.3E-13 110.2 13.6 62 278-367 16-86 (365)
164 PRK00440 rfc replication facto 99.0 6.7E-09 1.4E-13 107.2 13.4 104 279-434 19-127 (319)
165 PRK14971 DNA polymerase III su 98.9 6.7E-09 1.5E-13 118.2 13.9 105 278-435 18-147 (614)
166 COG2812 DnaX DNA polymerase II 98.9 3.2E-09 6.9E-14 117.7 10.8 134 278-480 17-170 (515)
167 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.2E-08 2.7E-13 100.4 13.9 76 331-434 39-117 (226)
168 COG3283 TyrR Transcriptional r 98.9 3.1E-09 6.8E-14 111.8 9.9 130 330-490 227-363 (511)
169 TIGR01818 ntrC nitrogen regula 98.9 6E-09 1.3E-13 113.7 12.5 126 331-482 158-290 (463)
170 PRK11361 acetoacetate metaboli 98.9 5.3E-09 1.2E-13 113.8 11.9 131 330-486 166-303 (457)
171 PF14532 Sigma54_activ_2: Sigm 98.9 6.1E-10 1.3E-14 102.7 2.9 91 280-434 1-94 (138)
172 PRK11331 5-methylcytosine-spec 98.9 3.7E-08 8.1E-13 107.7 16.5 133 330-481 194-350 (459)
173 PRK15115 response regulator Gl 98.9 1.6E-08 3.4E-13 110.0 13.1 125 331-488 158-296 (444)
174 COG1241 MCM2 Predicted ATPase 98.9 6.4E-09 1.4E-13 118.4 10.3 205 271-556 280-486 (682)
175 PRK09112 DNA polymerase III su 98.9 3.4E-08 7.3E-13 105.5 15.0 48 278-356 24-71 (351)
176 COG1239 ChlI Mg-chelatase subu 98.9 1.4E-08 3E-13 109.2 11.7 117 331-469 39-196 (423)
177 TIGR00678 holB DNA polymerase 98.8 3.2E-08 6.9E-13 95.7 12.6 83 331-434 15-121 (188)
178 smart00382 AAA ATPases associa 98.8 1.3E-08 2.7E-13 89.2 8.9 76 331-410 3-93 (148)
179 PRK08084 DNA replication initi 98.8 3.6E-08 7.9E-13 99.3 13.3 64 331-410 46-112 (235)
180 KOG1969 DNA replication checkp 98.8 4.2E-08 9.1E-13 110.7 14.9 193 278-494 272-472 (877)
181 COG1224 TIP49 DNA helicase TIP 98.8 5.1E-08 1.1E-12 102.8 14.5 62 278-366 40-103 (450)
182 PRK07471 DNA polymerase III su 98.8 4.4E-08 9.6E-13 105.1 14.4 46 278-354 20-65 (365)
183 PTZ00112 origin recognition co 98.8 4.3E-08 9.3E-13 113.2 15.0 114 277-434 755-894 (1164)
184 COG3284 AcoR Transcriptional a 98.8 5.5E-09 1.2E-13 116.6 7.2 137 328-491 334-477 (606)
185 PRK08903 DnaA regulatory inact 98.8 4.1E-08 9E-13 97.5 12.8 70 331-434 43-115 (227)
186 PRK05564 DNA polymerase III su 98.8 3.4E-08 7.4E-13 103.3 12.5 107 278-435 5-119 (313)
187 PRK13406 bchD magnesium chelat 98.8 2.2E-08 4.8E-13 113.2 10.9 104 331-449 26-133 (584)
188 KOG2170 ATPase of the AAA+ sup 98.8 8.3E-08 1.8E-12 99.4 13.7 214 267-552 72-299 (344)
189 PRK14086 dnaA chromosomal repl 98.8 7.2E-08 1.6E-12 109.0 14.0 85 331-434 315-404 (617)
190 PRK00149 dnaA chromosomal repl 98.8 4.7E-08 1E-12 107.3 12.3 85 331-434 149-238 (450)
191 PRK13765 ATP-dependent proteas 98.8 2.9E-08 6.4E-13 113.1 10.9 48 274-355 28-75 (637)
192 PF13177 DNA_pol3_delta2: DNA 98.8 9.4E-08 2E-12 91.2 12.7 130 281-481 1-154 (162)
193 PRK07399 DNA polymerase III su 98.8 7.6E-08 1.7E-12 101.3 13.2 46 278-354 5-50 (314)
194 PRK08058 DNA polymerase III su 98.8 7.1E-08 1.5E-12 102.0 12.9 148 279-494 7-173 (329)
195 PRK06893 DNA replication initi 98.8 8.1E-08 1.8E-12 96.4 12.6 76 331-434 40-118 (229)
196 TIGR00362 DnaA chromosomal rep 98.7 5.8E-08 1.2E-12 105.1 12.1 85 331-434 137-226 (405)
197 PF06068 TIP49: TIP49 C-termin 98.7 1.1E-07 2.3E-12 101.4 12.9 63 278-367 25-89 (398)
198 PRK08727 hypothetical protein; 98.7 1.3E-07 2.9E-12 95.1 13.0 76 331-434 42-120 (233)
199 KOG0735 AAA+-type ATPase [Post 98.7 7.5E-08 1.6E-12 108.4 10.9 147 324-494 425-577 (952)
200 PRK10365 transcriptional regul 98.7 1.3E-07 2.9E-12 102.3 12.0 130 330-485 162-298 (441)
201 PF00493 MCM: MCM2/3/5 family 98.6 2.3E-08 5E-13 105.8 5.1 155 271-469 18-173 (331)
202 PRK05707 DNA polymerase III su 98.6 3.5E-07 7.5E-12 97.0 13.9 122 331-494 23-169 (328)
203 PRK05642 DNA replication initi 98.6 2.1E-07 4.5E-12 93.9 11.5 76 331-434 46-124 (234)
204 COG1474 CDC6 Cdc6-related prot 98.6 4.1E-07 9E-12 97.7 14.4 62 279-368 19-85 (366)
205 PF00308 Bac_DnaA: Bacterial d 98.6 3.6E-07 7.7E-12 91.4 12.3 85 331-434 35-124 (219)
206 PRK04132 replication factor C 98.6 1.9E-07 4E-12 109.2 11.3 123 326-493 560-692 (846)
207 KOG0480 DNA replication licens 98.6 2.7E-07 5.8E-12 103.0 10.7 161 268-471 336-496 (764)
208 PRK14088 dnaA chromosomal repl 98.6 3.5E-07 7.5E-12 100.5 11.5 86 331-434 131-221 (440)
209 PRK14087 dnaA chromosomal repl 98.5 3.6E-07 7.8E-12 100.7 11.2 87 331-434 142-233 (450)
210 COG4650 RtcR Sigma54-dependent 98.5 1.4E-07 3E-12 97.4 7.0 128 331-484 209-346 (531)
211 KOG0736 Peroxisome assembly fa 98.5 3.6E-07 7.8E-12 103.8 10.7 177 331-552 432-609 (953)
212 KOG0478 DNA replication licens 98.5 2.6E-07 5.6E-12 103.8 9.4 135 271-445 423-562 (804)
213 KOG1942 DNA helicase, TBP-inte 98.5 2.8E-06 6.2E-11 87.9 15.7 61 278-365 39-101 (456)
214 COG5271 MDN1 AAA ATPase contai 98.5 3E-07 6.5E-12 109.7 8.8 155 331-554 1544-1704(4600)
215 PRK12422 chromosomal replicati 98.4 7.7E-07 1.7E-11 98.0 10.4 85 331-434 142-229 (445)
216 COG2607 Predicted ATPase (AAA+ 98.4 4.1E-06 8.9E-11 84.8 14.4 172 278-550 61-236 (287)
217 PRK12377 putative replication 98.4 5.6E-07 1.2E-11 91.9 8.2 84 331-435 102-191 (248)
218 TIGR00602 rad24 checkpoint pro 98.4 1.5E-06 3.2E-11 99.3 12.4 55 278-360 85-140 (637)
219 PRK06620 hypothetical protein; 98.4 4.3E-06 9.3E-11 83.5 12.8 26 331-356 45-70 (214)
220 KOG0741 AAA+-type ATPase [Post 98.4 5.5E-06 1.2E-10 91.3 14.4 95 331-434 539-633 (744)
221 PRK06871 DNA polymerase III su 98.4 6.3E-06 1.4E-10 87.4 14.2 123 331-493 25-169 (325)
222 PRK06964 DNA polymerase III su 98.3 5.8E-06 1.3E-10 88.2 13.6 64 394-494 131-195 (342)
223 TIGR03015 pepcterm_ATPase puta 98.3 1.4E-05 3.1E-10 80.8 15.7 25 331-355 44-68 (269)
224 KOG0477 DNA replication licens 98.3 5.8E-07 1.3E-11 100.0 5.8 154 271-470 443-599 (854)
225 PRK08769 DNA polymerase III su 98.3 1.1E-05 2.5E-10 85.2 14.1 126 331-493 27-175 (319)
226 PF13401 AAA_22: AAA domain; P 98.3 1.1E-06 2.5E-11 78.8 5.6 36 331-366 5-48 (131)
227 PRK08116 hypothetical protein; 98.3 2.6E-06 5.6E-11 87.9 8.9 85 331-434 115-205 (268)
228 PRK06526 transposase; Provisio 98.2 9E-07 1.9E-11 90.7 4.3 88 328-434 96-186 (254)
229 KOG0058 Peptide exporter, ABC 98.2 3.3E-06 7.2E-11 96.0 8.9 115 317-440 480-658 (716)
230 PRK08699 DNA polymerase III su 98.2 1.2E-05 2.5E-10 85.3 12.1 125 331-494 22-176 (325)
231 PRK07993 DNA polymerase III su 98.2 1.3E-05 2.9E-10 85.2 12.4 124 331-494 25-171 (334)
232 PRK09087 hypothetical protein; 98.2 5.4E-06 1.2E-10 83.4 9.0 27 331-357 45-71 (226)
233 COG5271 MDN1 AAA ATPase contai 98.2 3.6E-06 7.8E-11 101.0 8.3 119 331-467 889-1014(4600)
234 KOG0990 Replication factor C, 98.2 6.8E-06 1.5E-10 86.0 9.5 86 331-435 63-157 (360)
235 PRK08181 transposase; Validate 98.2 1.9E-06 4.1E-11 89.1 4.8 87 329-434 105-194 (269)
236 PRK07952 DNA replication prote 98.1 5.7E-06 1.2E-10 84.4 7.9 85 331-434 100-189 (244)
237 PF06309 Torsin: Torsin; Inte 98.1 6.6E-06 1.4E-10 75.9 7.2 63 266-354 14-77 (127)
238 PF13173 AAA_14: AAA domain 98.1 1E-05 2.3E-10 73.6 8.2 70 331-408 3-74 (128)
239 PRK09183 transposase/IS protei 98.1 3.1E-06 6.8E-11 86.8 5.1 95 322-434 94-191 (259)
240 PRK06090 DNA polymerase III su 98.1 6E-05 1.3E-09 79.8 14.8 122 331-494 26-171 (319)
241 KOG0482 DNA replication licens 98.1 5E-06 1.1E-10 91.1 6.4 139 268-445 333-475 (721)
242 COG1116 TauB ABC-type nitrate/ 98.0 1.1E-05 2.3E-10 82.2 7.5 37 318-354 16-53 (248)
243 KOG0481 DNA replication licens 98.0 6.3E-06 1.4E-10 90.4 6.0 195 269-543 323-517 (729)
244 PF00910 RNA_helicase: RNA hel 98.0 2.2E-05 4.8E-10 69.7 7.7 84 333-440 1-84 (107)
245 PF01695 IstB_IS21: IstB-like 97.9 9.1E-06 2E-10 78.9 4.9 82 331-434 48-135 (178)
246 PF01637 Arch_ATPase: Archaeal 97.9 4.3E-05 9.4E-10 74.2 9.6 24 331-354 21-44 (234)
247 KOG2227 Pre-initiation complex 97.9 7.7E-05 1.7E-09 81.6 11.6 104 277-410 150-271 (529)
248 KOG0479 DNA replication licens 97.9 7.6E-05 1.6E-09 83.2 11.2 191 271-550 295-494 (818)
249 PRK06835 DNA replication prote 97.9 3.1E-05 6.8E-10 82.3 8.0 85 331-434 184-273 (329)
250 KOG0055 Multidrug/pheromone ex 97.9 4.2E-05 9.1E-10 91.7 9.7 135 317-467 1002-1200(1228)
251 COG0464 SpoVK ATPases of the A 97.9 3.9E-05 8.5E-10 85.2 8.8 134 330-493 18-153 (494)
252 COG1125 OpuBA ABC-type proline 97.9 7.9E-05 1.7E-09 76.3 10.0 49 318-366 14-65 (309)
253 PF12775 AAA_7: P-loop contain 97.9 2.6E-05 5.6E-10 80.7 6.6 139 331-494 34-184 (272)
254 COG1484 DnaC DNA replication p 97.8 2.5E-05 5.3E-10 80.1 6.3 83 330-434 105-194 (254)
255 COG4608 AppF ABC-type oligopep 97.8 4.2E-05 9.2E-10 78.7 7.8 49 318-366 26-77 (268)
256 KOG2035 Replication factor C, 97.8 7.1E-05 1.5E-09 77.3 9.3 127 331-494 35-190 (351)
257 KOG1514 Origin recognition com 97.8 0.00011 2.5E-09 83.4 11.0 108 332-474 424-555 (767)
258 COG2274 SunT ABC-type bacterio 97.8 4E-05 8.7E-10 88.9 7.6 50 317-366 485-537 (709)
259 KOG2680 DNA helicase TIP49, TB 97.8 0.00024 5.3E-09 74.1 12.1 62 278-366 41-104 (454)
260 KOG0056 Heavy metal exporter H 97.7 0.00017 3.6E-09 79.4 9.8 135 318-468 551-749 (790)
261 COG1124 DppF ABC-type dipeptid 97.7 5.4E-05 1.2E-09 76.9 5.6 36 319-354 21-57 (252)
262 PF05621 TniB: Bacterial TniB 97.7 0.00035 7.6E-09 73.3 11.7 117 268-410 25-160 (302)
263 PF12774 AAA_6: Hydrolytic ATP 97.7 0.00011 2.3E-09 74.6 7.6 67 331-410 33-99 (231)
264 PRK06921 hypothetical protein; 97.7 0.00012 2.5E-09 75.6 7.9 35 331-365 118-156 (266)
265 PF05729 NACHT: NACHT domain 97.7 0.0007 1.5E-08 62.4 12.2 23 332-354 2-24 (166)
266 cd01120 RecA-like_NTPases RecA 97.7 0.00018 3.8E-09 65.8 8.2 32 333-364 2-36 (165)
267 TIGR02868 CydC thiol reductant 97.6 0.00011 2.4E-09 82.1 7.2 36 319-354 349-385 (529)
268 PRK08939 primosomal protein Dn 97.6 8.2E-05 1.8E-09 78.3 5.6 71 331-408 157-230 (306)
269 PRK05917 DNA polymerase III su 97.6 0.00037 8.1E-09 72.9 10.3 88 331-435 20-121 (290)
270 KOG0055 Multidrug/pheromone ex 97.6 0.00024 5.2E-09 85.5 9.8 51 317-367 365-418 (1228)
271 PF03215 Rad17: Rad17 cell cyc 97.6 0.00032 6.9E-09 78.9 10.3 32 331-362 46-77 (519)
272 PRK07276 DNA polymerase III su 97.6 0.0011 2.5E-08 69.3 13.4 120 331-489 25-162 (290)
273 PF13207 AAA_17: AAA domain; P 97.5 7.3E-05 1.6E-09 66.4 3.9 31 333-363 2-32 (121)
274 COG0593 DnaA ATPase involved i 97.5 0.00064 1.4E-08 74.2 11.4 84 331-434 114-202 (408)
275 PRK11174 cysteine/glutathione 97.5 0.00014 3E-09 82.3 6.5 37 318-354 363-400 (588)
276 PF13191 AAA_16: AAA ATPase do 97.5 0.00017 3.7E-09 68.1 5.7 59 279-366 2-63 (185)
277 COG4618 ArpD ABC-type protease 97.5 0.00031 6.8E-09 77.6 8.2 107 268-376 292-419 (580)
278 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00018 3.9E-09 67.2 4.9 84 319-407 14-100 (144)
279 cd03228 ABCC_MRP_Like The MRP 97.4 0.00046 1E-08 65.8 7.6 36 319-354 16-52 (171)
280 COG1132 MdlB ABC-type multidru 97.4 0.00058 1.3E-08 77.1 9.5 50 317-366 341-393 (567)
281 PRK05818 DNA polymerase III su 97.4 0.0013 2.7E-08 67.9 11.1 123 331-490 8-147 (261)
282 PRK00131 aroK shikimate kinase 97.4 0.00019 4.2E-09 67.2 4.5 32 330-361 4-35 (175)
283 cd03246 ABCC_Protease_Secretio 97.3 0.00061 1.3E-08 65.1 7.8 36 319-354 16-52 (173)
284 cd01128 rho_factor Transcripti 97.3 0.00047 1E-08 70.7 7.3 81 330-410 16-118 (249)
285 PRK10536 hypothetical protein; 97.3 0.0017 3.6E-08 67.1 11.2 23 331-353 75-97 (262)
286 cd03216 ABC_Carb_Monos_I This 97.3 0.00045 9.7E-09 65.7 6.7 36 319-354 14-50 (163)
287 TIGR03375 type_I_sec_LssB type 97.3 0.00042 9E-09 80.2 7.7 37 318-354 478-515 (694)
288 COG4619 ABC-type uncharacteriz 97.3 0.00027 5.8E-09 68.7 5.0 37 318-354 16-53 (223)
289 PRK07132 DNA polymerase III su 97.3 0.0026 5.7E-08 66.9 12.1 83 331-435 19-116 (299)
290 KOG1808 AAA ATPase containing 97.3 0.00034 7.3E-09 87.1 6.1 119 331-463 441-562 (1856)
291 PLN03130 ABC transporter C fam 97.3 0.00076 1.6E-08 85.1 9.3 48 318-365 1252-1302(1622)
292 PRK08118 topology modulation p 97.3 0.00026 5.7E-09 67.9 4.1 32 332-363 3-34 (167)
293 cd03223 ABCD_peroxisomal_ALDP 97.2 0.00072 1.6E-08 64.4 7.0 36 319-354 15-51 (166)
294 TIGR02688 conserved hypothetic 97.2 0.0012 2.6E-08 72.3 9.5 103 330-471 209-314 (449)
295 COG4525 TauB ABC-type taurine 97.2 0.0013 2.9E-08 65.3 8.8 37 318-354 18-55 (259)
296 PLN03232 ABC transporter C fam 97.2 0.0008 1.7E-08 84.4 9.2 37 318-354 1249-1286(1495)
297 PTZ00265 multidrug resistance 97.2 0.00058 1.2E-08 85.4 7.8 38 319-356 1182-1220(1466)
298 PRK13947 shikimate kinase; Pro 97.2 0.00031 6.7E-09 66.4 4.2 32 332-363 3-34 (171)
299 TIGR01193 bacteriocin_ABC ABC- 97.2 0.00078 1.7E-08 78.2 8.1 37 318-354 487-524 (708)
300 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00078 1.7E-08 77.9 8.0 37 318-354 466-503 (686)
301 TIGR03796 NHPM_micro_ABC1 NHPM 97.2 0.00078 1.7E-08 78.1 8.0 48 318-365 492-542 (710)
302 PHA00729 NTP-binding motif con 97.2 0.00044 9.6E-09 69.9 5.2 25 331-355 18-42 (226)
303 COG3842 PotA ABC-type spermidi 97.2 0.00023 5E-09 76.2 3.1 38 317-354 17-55 (352)
304 TIGR01846 type_I_sec_HlyB type 97.2 0.0012 2.6E-08 76.5 9.1 37 318-354 470-507 (694)
305 PRK07261 topology modulation p 97.2 0.00088 1.9E-08 64.4 6.7 34 332-365 2-35 (171)
306 PRK11176 lipid transporter ATP 97.2 0.0014 2.9E-08 74.2 9.2 48 318-365 356-406 (582)
307 PF03266 NTPase_1: NTPase; In 97.2 0.00055 1.2E-08 66.0 5.2 23 332-354 1-23 (168)
308 COG5265 ATM1 ABC-type transpor 97.1 0.0023 4.9E-08 69.7 10.2 136 317-468 275-474 (497)
309 cd00464 SK Shikimate kinase (S 97.1 0.00045 9.8E-09 63.7 4.3 31 332-362 1-31 (154)
310 PRK03839 putative kinase; Prov 97.1 0.0004 8.6E-09 66.6 4.0 31 332-362 2-32 (180)
311 COG1118 CysA ABC-type sulfate/ 97.1 0.00085 1.8E-08 70.4 6.6 37 318-354 15-52 (345)
312 TIGR00957 MRP_assoc_pro multi 97.1 0.0013 2.9E-08 82.5 9.6 49 318-366 1299-1350(1522)
313 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0012 2.5E-08 62.0 6.9 37 319-355 13-50 (157)
314 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0007 1.5E-08 65.8 5.5 83 320-408 15-102 (177)
315 COG1134 TagH ABC-type polysacc 97.1 0.0015 3.2E-08 66.6 7.9 39 317-355 39-78 (249)
316 PRK13657 cyclic beta-1,2-gluca 97.1 0.0011 2.3E-08 75.3 7.7 36 319-354 349-385 (588)
317 COG3854 SpoIIIAA ncharacterize 97.1 0.0017 3.7E-08 65.9 8.2 77 331-408 138-231 (308)
318 PRK15455 PrkA family serine pr 97.1 0.0006 1.3E-08 77.1 5.5 60 278-363 77-137 (644)
319 PRK09376 rho transcription ter 97.1 0.0011 2.4E-08 72.1 7.2 81 329-410 168-271 (416)
320 PRK00625 shikimate kinase; Pro 97.1 0.00053 1.1E-08 66.5 4.2 31 332-362 2-32 (173)
321 PRK10790 putative multidrug tr 97.0 0.0016 3.4E-08 74.0 8.3 48 319-366 355-405 (592)
322 PF13604 AAA_30: AAA domain; P 97.0 0.0028 6.1E-08 62.3 9.0 89 331-434 19-118 (196)
323 COG1120 FepC ABC-type cobalami 97.0 0.00052 1.1E-08 70.7 3.9 38 318-355 15-53 (258)
324 PF13671 AAA_33: AAA domain; P 97.0 0.00039 8.6E-09 63.3 2.7 24 333-356 2-25 (143)
325 PRK13948 shikimate kinase; Pro 97.0 0.00077 1.7E-08 65.9 4.7 36 327-362 7-42 (182)
326 COG3839 MalK ABC-type sugar tr 97.0 0.00044 9.5E-09 73.8 3.1 35 320-354 18-53 (338)
327 TIGR00767 rho transcription te 97.0 0.0017 3.7E-08 70.8 7.6 88 323-410 160-270 (415)
328 COG4988 CydD ABC-type transpor 97.0 0.002 4.4E-08 72.4 8.1 48 319-366 335-385 (559)
329 PRK14532 adenylate kinase; Pro 97.0 0.00069 1.5E-08 65.3 4.0 28 332-359 2-29 (188)
330 KOG0057 Mitochondrial Fe/S clu 97.0 0.0022 4.8E-08 71.6 8.3 51 317-367 364-416 (591)
331 PF07693 KAP_NTPase: KAP famil 97.0 0.011 2.4E-07 61.4 13.3 27 331-357 21-47 (325)
332 PHA02624 large T antigen; Prov 97.0 0.0061 1.3E-07 69.4 12.0 128 331-488 432-560 (647)
333 PRK14530 adenylate kinase; Pro 97.0 0.0008 1.7E-08 66.6 4.5 29 331-359 4-32 (215)
334 TIGR00958 3a01208 Conjugate Tr 97.0 0.0014 3E-08 76.3 7.1 36 319-354 495-531 (711)
335 COG4175 ProV ABC-type proline/ 97.0 0.0019 4.1E-08 68.2 7.3 37 318-354 41-78 (386)
336 PRK13949 shikimate kinase; Pro 97.0 0.00074 1.6E-08 64.9 4.0 32 331-362 2-33 (169)
337 PRK06217 hypothetical protein; 97.0 0.00079 1.7E-08 65.0 4.2 32 332-363 3-34 (183)
338 PRK11160 cysteine/glutathione 96.9 0.0022 4.7E-08 72.8 8.4 36 319-354 354-390 (574)
339 PTZ00243 ABC transporter; Prov 96.9 0.0021 4.5E-08 81.0 8.7 37 318-354 1323-1360(1560)
340 cd01124 KaiC KaiC is a circadi 96.9 0.0023 4.9E-08 61.0 7.1 32 333-364 2-36 (187)
341 PRK10789 putative multidrug tr 96.9 0.0022 4.7E-08 72.7 8.0 37 318-354 328-365 (569)
342 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0023 5.1E-08 63.9 7.3 33 320-352 20-52 (216)
343 COG1126 GlnQ ABC-type polar am 96.9 0.00065 1.4E-08 68.2 3.1 35 318-352 15-50 (240)
344 PRK06762 hypothetical protein; 96.9 0.0012 2.6E-08 62.2 4.8 36 331-366 3-38 (166)
345 cd02020 CMPK Cytidine monophos 96.9 0.00097 2.1E-08 60.8 4.0 30 333-362 2-31 (147)
346 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0029 6.4E-08 62.0 7.6 30 322-351 18-49 (200)
347 COG1618 Predicted nucleotide k 96.9 0.0026 5.7E-08 61.3 6.9 24 331-354 6-29 (179)
348 PRK04296 thymidine kinase; Pro 96.9 0.0029 6.3E-08 61.8 7.5 31 332-362 4-37 (190)
349 COG0703 AroK Shikimate kinase 96.9 0.00093 2E-08 64.9 3.8 33 331-363 3-35 (172)
350 PHA02774 E1; Provisional 96.9 0.0039 8.4E-08 70.7 9.3 79 328-440 431-511 (613)
351 PRK14531 adenylate kinase; Pro 96.9 0.0011 2.4E-08 64.1 4.4 33 331-365 3-35 (183)
352 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.3E-08 63.5 4.1 32 333-366 2-33 (183)
353 KOG1051 Chaperone HSP104 and r 96.8 0.012 2.5E-07 69.8 13.3 76 331-410 209-295 (898)
354 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.0036 7.8E-08 62.2 7.9 34 319-352 17-51 (204)
355 TIGR01618 phage_P_loop phage n 96.8 0.0018 4E-08 65.3 5.8 22 330-351 12-33 (220)
356 PRK05057 aroK shikimate kinase 96.8 0.0013 2.7E-08 63.4 4.5 33 331-363 5-37 (172)
357 KOG3347 Predicted nucleotide k 96.8 0.0011 2.4E-08 63.1 3.9 32 330-361 7-38 (176)
358 KOG0054 Multidrug resistance-a 96.8 0.0059 1.3E-07 75.2 10.9 138 315-468 1150-1350(1381)
359 cd02021 GntK Gluconate kinase 96.8 0.0011 2.4E-08 61.3 3.8 27 333-359 2-28 (150)
360 TIGR01313 therm_gnt_kin carboh 96.8 0.001 2.2E-08 62.5 3.5 27 333-359 1-27 (163)
361 cd01428 ADK Adenylate kinase ( 96.8 0.0012 2.7E-08 63.3 4.1 28 333-360 2-29 (194)
362 TIGR02857 CydD thiol reductant 96.8 0.003 6.5E-08 70.7 7.6 36 319-354 336-372 (529)
363 PRK03731 aroL shikimate kinase 96.8 0.0015 3.3E-08 61.8 4.4 32 331-362 3-34 (171)
364 TIGR02204 MsbA_rel ABC transpo 96.8 0.0035 7.6E-08 70.7 8.1 36 319-354 354-390 (576)
365 PF03969 AFG1_ATPase: AFG1-lik 96.8 0.0015 3.3E-08 70.4 4.9 27 329-355 61-87 (362)
366 PRK13946 shikimate kinase; Pro 96.7 0.0014 3.1E-08 63.4 4.2 33 330-362 10-42 (184)
367 TIGR02203 MsbA_lipidA lipid A 96.7 0.0047 1E-07 69.6 8.8 36 319-354 346-382 (571)
368 PF05272 VirE: Virulence-assoc 96.7 0.0036 7.7E-08 62.1 6.9 98 332-471 54-151 (198)
369 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.00079 1.7E-08 66.3 2.3 36 319-354 18-54 (218)
370 cd02027 APSK Adenosine 5'-phos 96.7 0.0047 1E-07 58.0 7.3 34 333-366 2-38 (149)
371 TIGR01271 CFTR_protein cystic 96.7 0.0052 1.1E-07 77.3 9.7 38 317-354 1231-1269(1490)
372 cd00227 CPT Chloramphenicol (C 96.7 0.0015 3.2E-08 62.6 3.9 34 331-364 3-36 (175)
373 TIGR02315 ABC_phnC phosphonate 96.7 0.001 2.2E-08 66.6 2.9 36 319-354 16-52 (243)
374 COG1102 Cmk Cytidylate kinase 96.7 0.0015 3.2E-08 63.0 3.7 37 520-556 137-173 (179)
375 KOG1970 Checkpoint RAD17-RFC c 96.7 0.025 5.3E-07 63.6 13.6 32 331-362 111-142 (634)
376 COG0444 DppD ABC-type dipeptid 96.7 0.0021 4.6E-08 67.7 5.2 39 318-356 18-57 (316)
377 PF00005 ABC_tran: ABC transpo 96.7 0.00059 1.3E-08 61.9 0.9 34 321-354 1-35 (137)
378 PRK14722 flhF flagellar biosyn 96.7 0.0092 2E-07 64.7 10.1 31 324-354 130-161 (374)
379 KOG2543 Origin recognition com 96.7 0.03 6.6E-07 60.5 13.7 64 274-366 3-66 (438)
380 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0011 2.3E-08 65.1 2.6 36 319-354 15-51 (211)
381 cd01131 PilT Pilus retraction 96.7 0.0041 8.8E-08 61.2 6.7 25 331-355 2-26 (198)
382 COG4178 ABC-type uncharacteriz 96.7 0.007 1.5E-07 68.9 9.4 36 319-354 407-443 (604)
383 TIGR01192 chvA glucan exporter 96.7 0.0039 8.4E-08 71.0 7.5 36 319-354 349-385 (585)
384 COG1123 ATPase components of v 96.7 0.0027 5.9E-08 71.3 6.1 37 318-354 304-341 (539)
385 PRK00771 signal recognition pa 96.6 0.017 3.6E-07 64.0 12.1 37 329-365 94-133 (437)
386 TIGR01166 cbiO cobalt transpor 96.6 0.0014 3E-08 63.4 3.3 36 319-354 6-42 (190)
387 PRK12723 flagellar biosynthesi 96.6 0.019 4.2E-07 62.6 12.3 25 330-354 174-198 (388)
388 TIGR01360 aden_kin_iso1 adenyl 96.6 0.002 4.3E-08 61.4 4.2 29 331-359 4-32 (188)
389 PRK14974 cell division protein 96.6 0.014 3E-07 62.5 11.0 33 331-363 141-176 (336)
390 KOG3354 Gluconate kinase [Carb 96.6 0.052 1.1E-06 52.3 13.4 36 330-367 12-47 (191)
391 cd03260 ABC_PstB_phosphate_tra 96.6 0.0014 3E-08 65.1 3.1 36 319-354 14-50 (227)
392 TIGR02673 FtsE cell division A 96.6 0.0012 2.7E-08 64.8 2.7 36 319-354 16-52 (214)
393 cd03256 ABC_PhnC_transporter A 96.6 0.0012 2.5E-08 66.0 2.5 36 319-354 15-51 (241)
394 COG0410 LivF ABC-type branched 96.6 0.004 8.7E-08 63.1 6.3 51 317-367 15-68 (237)
395 PRK15177 Vi polysaccharide exp 96.6 0.0012 2.6E-08 65.5 2.6 35 320-354 2-37 (213)
396 TIGR00960 3a0501s02 Type II (G 96.6 0.0011 2.4E-08 65.3 2.2 36 319-354 17-53 (216)
397 PTZ00301 uridine kinase; Provi 96.6 0.02 4.4E-07 57.2 11.2 22 333-354 6-27 (210)
398 cd03258 ABC_MetN_methionine_tr 96.6 0.0013 2.8E-08 65.5 2.7 36 319-354 19-55 (233)
399 cd03243 ABC_MutS_homologs The 96.6 0.0072 1.6E-07 59.3 7.8 25 328-352 26-51 (202)
400 TIGR03608 L_ocin_972_ABC putat 96.6 0.0013 2.8E-08 64.1 2.5 36 319-354 12-48 (206)
401 cd03292 ABC_FtsE_transporter F 96.6 0.0013 2.8E-08 64.5 2.4 36 319-354 15-51 (214)
402 cd03261 ABC_Org_Solvent_Resist 96.5 0.0012 2.6E-08 66.0 2.2 36 319-354 14-50 (235)
403 PRK14528 adenylate kinase; Pro 96.5 0.0024 5.3E-08 62.1 4.2 30 331-360 2-31 (186)
404 cd03235 ABC_Metallic_Cations A 96.5 0.0013 2.7E-08 64.7 2.3 36 319-354 13-49 (213)
405 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0015 3.2E-08 64.1 2.8 36 319-354 14-50 (213)
406 PRK02496 adk adenylate kinase; 96.5 0.0024 5.1E-08 61.5 4.1 28 332-359 3-30 (184)
407 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0014 3E-08 64.2 2.5 36 319-354 14-50 (205)
408 COG1117 PstB ABC-type phosphat 96.5 0.002 4.3E-08 64.8 3.5 37 318-354 20-57 (253)
409 cd03301 ABC_MalK_N The N-termi 96.5 0.0014 3.1E-08 64.3 2.6 36 319-354 14-50 (213)
410 TIGR02237 recomb_radB DNA repa 96.5 0.0048 1E-07 60.4 6.3 35 331-365 12-50 (209)
411 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0016 3.4E-08 58.7 2.5 33 319-351 3-36 (107)
412 cd03263 ABC_subfamily_A The AB 96.5 0.0015 3.2E-08 64.5 2.6 36 319-354 16-52 (220)
413 PTZ00088 adenylate kinase 1; P 96.5 0.0025 5.4E-08 64.6 4.2 30 331-360 7-36 (229)
414 cd03259 ABC_Carb_Solutes_like 96.5 0.0016 3.5E-08 64.0 2.8 36 319-354 14-50 (213)
415 cd03229 ABC_Class3 This class 96.5 0.0014 3E-08 63.0 2.3 36 319-354 14-50 (178)
416 TIGR02858 spore_III_AA stage I 96.5 0.0048 1E-07 64.0 6.3 25 331-355 112-136 (270)
417 cd03257 ABC_NikE_OppD_transpor 96.5 0.0016 3.5E-08 64.4 2.7 36 319-354 19-55 (228)
418 cd03238 ABC_UvrA The excision 96.5 0.0019 4E-08 62.9 3.0 35 318-352 8-43 (176)
419 cd03269 ABC_putative_ATPase Th 96.5 0.0016 3.6E-08 63.8 2.7 36 319-354 14-50 (210)
420 cd03264 ABC_drug_resistance_li 96.5 0.0015 3.3E-08 64.1 2.4 36 319-354 14-49 (211)
421 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0014 3.1E-08 64.7 2.3 36 319-354 18-54 (220)
422 PF13521 AAA_28: AAA domain; P 96.5 0.0037 8.1E-08 58.9 4.9 26 333-359 2-27 (163)
423 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0015 3.3E-08 64.5 2.3 36 319-354 19-55 (221)
424 smart00534 MUTSac ATPase domai 96.5 0.0074 1.6E-07 58.6 7.1 19 333-351 2-20 (185)
425 PRK14247 phosphate ABC transpo 96.5 0.0018 3.8E-08 65.4 2.9 36 319-354 17-53 (250)
426 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0015 3.3E-08 65.1 2.4 36 319-354 14-50 (236)
427 PRK10247 putative ABC transpor 96.5 0.0018 3.8E-08 64.6 2.8 36 319-354 21-57 (225)
428 TIGR03410 urea_trans_UrtE urea 96.5 0.0016 3.4E-08 64.8 2.4 36 319-354 14-50 (230)
429 cd03218 ABC_YhbG The ABC trans 96.5 0.0017 3.8E-08 64.5 2.7 36 319-354 14-50 (232)
430 PRK11022 dppD dipeptide transp 96.5 0.0015 3.2E-08 69.3 2.3 37 319-355 21-58 (326)
431 PF13238 AAA_18: AAA domain; P 96.5 0.0023 5.1E-08 56.6 3.2 22 333-354 1-22 (129)
432 cd03247 ABCC_cytochrome_bd The 96.4 0.0017 3.7E-08 62.2 2.5 36 319-354 16-52 (178)
433 cd03296 ABC_CysA_sulfate_impor 96.4 0.0016 3.6E-08 65.2 2.4 36 319-354 16-52 (239)
434 PRK11629 lolD lipoprotein tran 96.4 0.0016 3.4E-08 65.1 2.2 36 319-354 23-59 (233)
435 PRK08154 anaerobic benzoate ca 96.4 0.0051 1.1E-07 64.8 6.1 32 331-362 134-165 (309)
436 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.4 0.0019 4.2E-08 64.5 2.8 36 319-354 17-53 (238)
437 cd03245 ABCC_bacteriocin_expor 96.4 0.0021 4.6E-08 63.4 3.0 36 319-354 18-54 (220)
438 cd01121 Sms Sms (bacterial rad 96.4 0.005 1.1E-07 66.7 6.0 76 331-410 83-173 (372)
439 PRK10584 putative ABC transpor 96.4 0.0019 4E-08 64.2 2.5 35 320-354 25-60 (228)
440 PF01583 APS_kinase: Adenylyls 96.4 0.0085 1.8E-07 57.5 6.9 37 332-368 4-43 (156)
441 PRK13538 cytochrome c biogenes 96.4 0.0019 4.1E-08 63.3 2.5 36 319-354 15-51 (204)
442 cd03224 ABC_TM1139_LivF_branch 96.4 0.002 4.4E-08 63.5 2.7 36 319-354 14-50 (222)
443 PRK11264 putative amino-acid A 96.4 0.0021 4.6E-08 64.7 2.9 36 319-354 17-53 (250)
444 TIGR01425 SRP54_euk signal rec 96.4 0.048 1E-06 60.3 13.5 34 331-364 101-137 (429)
445 COG1136 SalX ABC-type antimicr 96.4 0.0025 5.4E-08 64.5 3.3 49 318-366 18-69 (226)
446 cd03265 ABC_DrrA DrrA is the A 96.4 0.002 4.4E-08 63.7 2.6 36 319-354 14-50 (220)
447 TIGR01978 sufC FeS assembly AT 96.4 0.0023 5.1E-08 64.0 3.1 36 319-354 14-50 (243)
448 cd03266 ABC_NatA_sodium_export 96.4 0.002 4.3E-08 63.5 2.5 36 319-354 19-55 (218)
449 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0052 1.1E-07 61.3 5.5 22 331-352 30-51 (213)
450 cd03251 ABCC_MsbA MsbA is an e 96.4 0.0022 4.7E-08 63.9 2.8 36 319-354 16-52 (234)
451 TIGR02770 nickel_nikD nickel i 96.4 0.0023 5E-08 63.9 3.0 36 320-355 1-37 (230)
452 PRK14256 phosphate ABC transpo 96.4 0.0023 5E-08 64.7 3.0 36 319-354 18-54 (252)
453 TIGR01351 adk adenylate kinase 96.4 0.0034 7.3E-08 62.0 4.1 28 333-360 2-29 (210)
454 PRK06547 hypothetical protein; 96.4 0.0033 7.2E-08 60.8 3.9 31 331-361 16-46 (172)
455 cd03252 ABCC_Hemolysin The ABC 96.4 0.0022 4.9E-08 64.0 2.8 36 319-354 16-52 (237)
456 PRK14267 phosphate ABC transpo 96.4 0.0022 4.8E-08 64.8 2.8 36 319-354 18-54 (253)
457 KOG1968 Replication factor C, 96.3 0.0019 4.2E-08 76.4 2.7 76 333-409 360-442 (871)
458 cd03244 ABCC_MRP_domain2 Domai 96.3 0.0025 5.4E-08 62.9 3.0 36 319-354 18-54 (221)
459 PRK14273 phosphate ABC transpo 96.3 0.0025 5.5E-08 64.5 3.1 37 319-355 21-58 (254)
460 cd03250 ABCC_MRP_domain1 Domai 96.3 0.0023 5E-08 62.5 2.7 36 319-354 19-55 (204)
461 cd03234 ABCG_White The White s 96.3 0.0025 5.5E-08 63.3 3.0 38 318-355 20-58 (226)
462 PRK00279 adk adenylate kinase; 96.3 0.0038 8.2E-08 61.8 4.2 33 332-366 2-34 (215)
463 PRK10908 cell division protein 96.3 0.0021 4.4E-08 63.7 2.3 36 319-354 16-52 (222)
464 cd03215 ABC_Carb_Monos_II This 96.3 0.0021 4.7E-08 61.9 2.4 35 320-354 15-50 (182)
465 PRK11124 artP arginine transpo 96.3 0.0021 4.6E-08 64.5 2.4 36 319-354 16-52 (242)
466 PRK11248 tauB taurine transpor 96.3 0.002 4.4E-08 65.6 2.3 36 319-354 15-51 (255)
467 TIGR02324 CP_lyasePhnL phospho 96.3 0.0021 4.6E-08 63.6 2.4 36 319-354 22-58 (224)
468 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0021 4.6E-08 61.4 2.3 36 319-354 14-50 (173)
469 PRK09493 glnQ glutamine ABC tr 96.3 0.0021 4.7E-08 64.4 2.4 36 319-354 15-51 (240)
470 COG2884 FtsE Predicted ATPase 96.3 0.0032 6.9E-08 62.4 3.5 37 318-354 15-52 (223)
471 PRK14242 phosphate transporter 96.3 0.0028 6E-08 64.1 3.2 36 319-354 20-56 (253)
472 cd03254 ABCC_Glucan_exporter_l 96.3 0.0025 5.4E-08 63.3 2.9 36 319-354 17-53 (229)
473 PF00448 SRP54: SRP54-type pro 96.3 0.019 4.1E-07 56.7 9.0 24 331-354 2-25 (196)
474 PF13245 AAA_19: Part of AAA d 96.3 0.0062 1.3E-07 51.3 4.8 24 331-354 11-35 (76)
475 PRK10744 pstB phosphate transp 96.3 0.0024 5.3E-08 65.0 2.8 36 319-354 27-63 (260)
476 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0025 5.5E-08 63.7 2.9 36 319-354 15-51 (236)
477 COG0563 Adk Adenylate kinase a 96.3 0.0038 8.2E-08 60.9 4.0 32 332-365 2-33 (178)
478 TIGR03005 ectoine_ehuA ectoine 96.3 0.002 4.4E-08 65.1 2.2 36 319-354 14-50 (252)
479 PRK13539 cytochrome c biogenes 96.3 0.0022 4.8E-08 63.0 2.4 36 319-354 16-52 (207)
480 cd03232 ABC_PDR_domain2 The pl 96.3 0.0025 5.5E-08 62.0 2.7 35 319-353 21-56 (192)
481 PRK13540 cytochrome c biogenes 96.3 0.0023 5E-08 62.5 2.4 36 319-354 15-51 (200)
482 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0023 4.9E-08 64.4 2.4 36 319-354 15-51 (242)
483 PRK06067 flagellar accessory p 96.3 0.01 2.2E-07 59.4 7.1 34 331-364 26-62 (234)
484 PRK11823 DNA repair protein Ra 96.3 0.013 2.9E-07 64.9 8.6 76 331-410 81-171 (446)
485 cd03290 ABCC_SUR1_N The SUR do 96.3 0.003 6.6E-08 62.4 3.2 36 319-354 15-51 (218)
486 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.012 2.6E-07 59.3 7.6 34 319-352 19-53 (222)
487 PRK14274 phosphate ABC transpo 96.3 0.0028 6E-08 64.4 3.0 37 319-355 26-63 (259)
488 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.0032 6.9E-08 61.7 3.3 36 319-354 22-58 (207)
489 TIGR01188 drrA daunorubicin re 96.3 0.0022 4.8E-08 66.9 2.3 36 319-354 7-43 (302)
490 PF12780 AAA_8: P-loop contain 96.3 0.012 2.5E-07 61.2 7.5 68 329-403 30-97 (268)
491 PRK14253 phosphate ABC transpo 96.3 0.0032 7E-08 63.4 3.4 37 319-355 17-54 (249)
492 TIGR00972 3a0107s01c2 phosphat 96.3 0.0027 5.8E-08 64.0 2.7 36 319-354 15-51 (247)
493 TIGR01189 ccmA heme ABC export 96.3 0.0024 5.1E-08 62.3 2.3 36 319-354 14-50 (198)
494 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0029 6.3E-08 61.9 2.9 36 319-354 14-50 (208)
495 TIGR01420 pilT_fam pilus retra 96.2 0.0092 2E-07 63.8 6.9 25 331-355 123-147 (343)
496 PRK14241 phosphate transporter 96.2 0.0027 5.8E-08 64.5 2.7 36 319-354 18-54 (258)
497 PRK11247 ssuB aliphatic sulfon 96.2 0.0025 5.4E-08 65.3 2.5 36 319-354 26-62 (257)
498 cd01130 VirB11-like_ATPase Typ 96.2 0.023 4.9E-07 55.2 9.0 25 331-355 26-50 (186)
499 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0032 6.9E-08 62.5 3.1 36 319-354 28-64 (226)
500 PRK06696 uridine kinase; Valid 96.2 0.01 2.3E-07 59.2 6.8 35 332-366 24-61 (223)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-55 Score=461.21 Aligned_cols=367 Identities=60% Similarity=0.880 Sum_probs=304.2
Q ss_pred cccCCCCCCCCCCCCCceeeecC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhhccccChHHHHH
Q 008014 209 TSSYGDPPEVWQPPGDGIAVRVN-GQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKK 287 (581)
Q Consensus 209 ~~s~~~p~~~~~~~g~g~~vr~~-~~~~~~~~gGggg~~~g~~~~~~~~~~~~~~~~~~~~~ei~~~Ld~~VvGqd~ak~ 287 (581)
-+|..++++-|.+ +++|..++- .+--....+.+.. .+ ......|.+..-...+++|++|++.||++||||+.||+
T Consensus 80 ~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~~--~~-~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~AKK 155 (564)
T KOG0745|consen 80 CTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGAK--PG-KLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKAKK 155 (564)
T ss_pred ccccCCchhhccC-CCCeEEeeccchhhhhhhcccCC--CC-CCCccccccccccCCCCChHHHHHHhhhheechhhhhh
Confidence 4566688888855 566655521 1111111111110 00 11112222333334789999999999999999999999
Q ss_pred HHHHHHHhhHHHHhh--hhhcccccCCCCC-------C-----------------CCCCCCCC--cccccCccEEEECCC
Q 008014 288 VLSVAVYNHYMRIYN--ESSQKRSAGESSS-------C-----------------TTDGVDDD--TVELEKSNILLMGPT 339 (581)
Q Consensus 288 ~L~~~V~~~~~r~~~--~~~~~~~~~~~~~-------~-----------------~~~~l~~v--~~~v~~~~VLL~GPP 339 (581)
.|..+|+|||+|+++ ..+.+..+..+.. . -..++++. ++.+.+.+|||.||+
T Consensus 156 vLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllGPt 235 (564)
T KOG0745|consen 156 VLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLGPT 235 (564)
T ss_pred eeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEECCC
Confidence 999999999999999 3333222211111 0 12234444 788999999999999
Q ss_pred CCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCC
Q 008014 340 GSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (581)
Q Consensus 340 GTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d 419 (581)
|+|||+||+.||+.+++||...+|+.++++||||++++..+.++++.|.+++++++.+||||||+|++.......+.++|
T Consensus 236 GsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RD 315 (564)
T KOG0745|consen 236 GSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRD 315 (564)
T ss_pred CCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777778899
Q ss_pred CchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCCh----hhhhh
Q 008014 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRANM 495 (581)
Q Consensus 420 ~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P----~~e~~ 495 (581)
+++|+||++||+++||+.|+||+.+.+++.+++.+.|||+||+|||.|+|.++|+.+.+|+.++.+||+.| .+.++
T Consensus 316 VsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~ 395 (564)
T KOG0745|consen 316 VSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANM 395 (564)
T ss_pred ccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 66666
Q ss_pred hc-CCCchHHH-HHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEe
Q 008014 496 RA-GGVTDAVV-TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFY 573 (581)
Q Consensus 496 ~~-~~~~~~~~-~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~ 573 (581)
.. .+.+.... ..++++++++.||+.+|+.|||++||+.+|.|..|++++|++|++|+.+.+++||+++|++.+++|+|
T Consensus 396 ~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~f 475 (564)
T KOG0745|consen 396 ATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHF 475 (564)
T ss_pred ccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEe
Confidence 65 44444433 45699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 008014 574 GKCFEI 579 (581)
Q Consensus 574 ~~~~~~ 579 (581)
|++|..
T Consensus 476 Te~Al~ 481 (564)
T KOG0745|consen 476 TEKALE 481 (564)
T ss_pred cHHHHH
Confidence 998853
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-53 Score=434.17 Aligned_cols=294 Identities=61% Similarity=0.965 Sum_probs=275.1
Q ss_pred CCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCC
Q 008014 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (581)
Q Consensus 263 ~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTG 342 (581)
...++|++|++.||++|+||+.||+.|..+|+|||+|+..... ...+++.++++||.||+|||
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~-----------------~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKED-----------------NDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCC-----------------CCceeeeeccEEEECCCCCc
Confidence 3578999999999999999999999999999999999865431 12377889999999999999
Q ss_pred hHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 343 KTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
||+||+.||+.+++||...+++.++++||||++++..+.++++.+++++..+..|||+|||||+++...+..++.+|+++
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
|++|++||++|||+..+||-.|+++|+.+.++.+||+|++|||+|+|.++++.+..|.-.+.|||+...... ..
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------SK 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999876532 12
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
+.....++++++++||.++|+.|||++|++.+..+++|++++|.+|++++.|.+.+||.++|++.|++|+|+++|..
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~ 340 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALK 340 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999998753
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=5.6e-42 Score=369.05 Aligned_cols=292 Identities=62% Similarity=0.971 Sum_probs=257.4
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChH
Q 008014 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (581)
Q Consensus 265 ~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKT 344 (581)
.++|++|.+.|+++|+||++||+.|..++++||+++....... ..+.++++++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~----------------~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD----------------DDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc----------------cccccCCceEEEEcCCCCCHH
Confidence 7899999999999999999999999999999999975532210 023356689999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 345 tLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
++|+++|+.++.||+.++++.+.+.+|+|++++..+..++..+...+.++.++||||||||++...+...+...|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999998889999988888888777766667778899999999999998866666778999999
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHH
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~ 504 (581)
+|++||++|||..+.+|+.+.++++....++|+|+|++|||+|+|.++++.+.+|+....++|....... ....
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~------~~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK------KEKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc------cccc
Confidence 9999999999999999999998999999999999999999999999999999998888899997543211 0111
Q ss_pred HHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 505 ~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
....+++.+.++|+.++||.|||++|++.++.|++|+++++.+|++++++.++++|++.|+.+|+++++++++.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al 350 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEAL 350 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHH
Confidence 13677888999999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=8.7e-41 Score=358.93 Aligned_cols=294 Identities=62% Similarity=0.954 Sum_probs=255.1
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCCh
Q 008014 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (581)
Q Consensus 264 ~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGK 343 (581)
..++|.+|++.|+++|+||++||+.|..++++||+++......+ .+..+.+.++++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 36799999999999999999999999999999999975421100 0012445668999999999999
Q ss_pred HHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 344 TtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
|++|+++|+.++.+|..++++.+.+.+|+|++.+..+...+..+.+.+..+.++||||||||+++++++..+.+.+++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999998888999998778888877777677777889999999999999987777788899999
Q ss_pred hHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchH
Q 008014 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~ 503 (581)
.+|++||++|||..+++|..+.++++....++|+|+|++|||+|+|.++++++.+|.....++|....... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999888888888899999999999999999999999999887766779997543211 1
Q ss_pred HHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 504 ~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
.....+++.+.++|+.+++|.|||++|++.++.|++|+++++.+|+.++++.+.++|++.++.+|++|++++++..
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~ 357 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALK 357 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHH
Confidence 1234667778889999999999999999999999999999999999999999999999999999999999998753
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=3.6e-35 Score=313.43 Aligned_cols=237 Identities=44% Similarity=0.677 Sum_probs=201.5
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHH
Q 008014 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (581)
Q Consensus 266 ~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTt 345 (581)
.+|++|.+.|+++|+||++||+.+..++++||++...... ..-.++++++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~------------------~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE------------------LKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc------------------cccccCCceEEEECCCCCCHHH
Confidence 3799999999999999999999999999999988643211 1123456899999999999999
Q ss_pred HHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhh---------------------------------h---
Q 008014 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---------------------------------Y--- 389 (581)
Q Consensus 346 LAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~---------------------------------~--- 389 (581)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+. .
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 9999999999999999999998778999877777777766540 0
Q ss_pred ------------------------------h-------------------------------------------------
Q 008014 390 ------------------------------N------------------------------------------------- 390 (581)
Q Consensus 390 ------------------------------~------------------------------------------------- 390 (581)
.
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 0
Q ss_pred --------------------HHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCC
Q 008014 391 --------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (581)
Q Consensus 391 --------------------l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~ 450 (581)
-...+.|||||||||+++... .+.+.|+++++||+.||++|||.+|++
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 012578999999999999764 345889999999999999999999986
Q ss_pred CCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcc
Q 008014 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (581)
Q Consensus 451 ~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~R 530 (581)
+...++|++++|||+|+|... +++| +.|||++|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~~-----------------------------------------kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQLA-----------------------------------------KPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCCC-----------------------------------------Chhh-----ccHHHhCc
Confidence 124799999999999998631 2334 67999999
Q ss_pred cCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 531 f~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
|+.++.|++|+++++.+||+++.+++++||+++|+.+|++|+|+++|..
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~ 372 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIK 372 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHH
Confidence 9999999999999999999999999999999999999999999999864
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.5e-34 Score=308.89 Aligned_cols=237 Identities=43% Similarity=0.688 Sum_probs=201.0
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHH
Q 008014 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (581)
Q Consensus 266 ~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTt 345 (581)
.+|++|.+.|+++|+||++||+.|..++++||++...... ....+.+.++||+||||||||+
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~------------------~~~e~~~~~ILliGp~G~GKT~ 65 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE------------------LRDEVTPKNILMIGPTGVGKTE 65 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc------------------cccccCCceEEEECCCCCCHHH
Confidence 5899999999999999999999999999999987532111 1122345899999999999999
Q ss_pred HHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhh--------------------------------------
Q 008014 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS-------------------------------------- 387 (581)
Q Consensus 346 LAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a-------------------------------------- 387 (581)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+
T Consensus 66 LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~ 145 (443)
T PRK05201 66 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGE 145 (443)
T ss_pred HHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccc
Confidence 999999999999999999999988999988777777776665
Q ss_pred ---------------------------------h--h-------------------------------------------
Q 008014 388 ---------------------------------D--Y------------------------------------------- 389 (581)
Q Consensus 388 ---------------------------------~--~------------------------------------------- 389 (581)
+ .
T Consensus 146 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l 225 (443)
T PRK05201 146 EEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKIL 225 (443)
T ss_pred cccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHH
Confidence 0 0
Q ss_pred -----------------hHH-hhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCC
Q 008014 390 -----------------NVA-AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451 (581)
Q Consensus 390 -----------------~l~-~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~ 451 (581)
.+. ....|||||||||+++...+. .+.|+++++||+.||++|||.+|++
T Consensus 226 ~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~----------- 292 (443)
T PRK05201 226 IEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST----------- 292 (443)
T ss_pred HHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee-----------
Confidence 011 237899999999999986432 4789999999999999999999986
Q ss_pred CceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhccc
Q 008014 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF 531 (581)
Q Consensus 452 ~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf 531 (581)
+...|+|++++|||+|+|.. .+++| +.|||++||
T Consensus 293 k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR~ 326 (443)
T PRK05201 293 KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGRF 326 (443)
T ss_pred cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCcc
Confidence 12479999999999999853 02233 679999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 532 PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 532 ~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
|.++.|++|+++++.+||+++.+++++||+++|+.+|++|+||++|..
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~ 374 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIR 374 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHH
Confidence 999999999999999999999999999999999999999999999864
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-31 Score=271.02 Aligned_cols=238 Identities=45% Similarity=0.692 Sum_probs=202.9
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChH
Q 008014 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (581)
Q Consensus 265 ~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKT 344 (581)
..+|++|..+||++||||++||+.+..++.|.|+|...... +.-++-|+++|+.||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~------------------lr~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE------------------LRDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH------------------HhhccCccceEEECCCCCcHH
Confidence 46899999999999999999999999999999988544322 233466799999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhH---------------------------------
Q 008014 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV--------------------------------- 391 (581)
Q Consensus 345 tLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l--------------------------------- 391 (581)
.+||.||+..+.||+.+.++-+++.||||.++++.++++.+.+-..+
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 99999999999999999999999999999999988887655321100
Q ss_pred --------------------------------------------------------------------------------
Q 008014 392 -------------------------------------------------------------------------------- 391 (581)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (581)
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence
Q ss_pred ----------------------HhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCC
Q 008014 392 ----------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (581)
Q Consensus 392 ----------------------~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~ 449 (581)
...+.|||||||||+++.... .+++|++++++|.-||.++||.+|+. +
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T------K-- 294 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST------K-- 294 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec------c--
Confidence 223689999999999988643 33449999999999999999998874 2
Q ss_pred CCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhc
Q 008014 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (581)
Q Consensus 450 ~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~ 529 (581)
.+ .+.|..++||++|+|.- -+++| +.||+-+
T Consensus 295 yG---~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 295 YG---PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred cc---ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 22 47899999999999752 13455 6799999
Q ss_pred ccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 530 Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
|||+.|++..|+.+++.+||+++.+++++||..+|+.+|++|.|+++++.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~ 375 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIK 375 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999874
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=239.36 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=157.4
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|-|.++.+++|+++|..+.+ .++...+. . +|++||||||||||||+||||+|+..+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI--------------------~-PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGI--------------------D-PPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCC--------------------C-CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 589999999999999985442 23333332 2 347999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|+++.++++++ +|+|+. .+.++++|..|+. ..|+||||||||++..+|.+.+.|+|..-.++.-+||..|||
T Consensus 211 AtFIrvvgSElVq-KYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 211 ATFIRVVGSELVQ-KYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ceEEEeccHHHHH-HHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 9999999999994 799999 8999999999875 689999999999999999987777664433333444445554
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
+ + ...|+-+|+|||..+ +|. +++.||||++|+|+.|+.+. ..++++..
T Consensus 285 F-----------D--------~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g-----------R~~Il~IH 334 (406)
T COG1222 285 F-----------D--------PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG-----------RAEILKIH 334 (406)
T ss_pred C-----------C--------CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH-----------HHHHHHHH
Confidence 3 1 245788999999999 444 45688999999999999875 33444433
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~ 552 (581)
...--+...+.=+.+.+. -+.+|-.|+..|++|.
T Consensus 335 trkM~l~~dvd~e~la~~-----~~g~sGAdlkaictEA 368 (406)
T COG1222 335 TRKMNLADDVDLELLARL-----TEGFSGADLKAICTEA 368 (406)
T ss_pred hhhccCccCcCHHHHHHh-----cCCCchHHHHHHHHHH
Confidence 322111112333444433 2467777887777764
No 9
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.7e-26 Score=256.26 Aligned_cols=244 Identities=23% Similarity=0.338 Sum_probs=182.5
Q ss_pred CCCCCCCCCC----CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGNK----FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~~----~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|++.|+... ...+..+++.|.+.|+||++|++.+..+|. +.+ ++..+++. |-
T Consensus 465 ~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIr----raR--------aGL~dp~r-----------Pi 521 (786)
T COG0542 465 RWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIR----RAR--------AGLGDPNR-----------PI 521 (786)
T ss_pred HHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHH----HHh--------cCCCCCCC-----------Cc
Confidence 6888888753 334455889999999999999999999994 322 23333333 23
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC---CCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~---~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
+.+||.||+|+|||.||++||..+. ..++++|++++.+ +||||++.++.+++...+ .+.
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr-------~Py 594 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRR-------KPY 594 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhc-------CCC
Confidence 6889999999999999999999995 7899999999764 799999977777777554 356
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
+||++|||++++++ +.+.||++||.+..+ +.. ...++.+|.++|+|+|... +.+.
T Consensus 595 SViLlDEIEKAHpd--------------V~nilLQVlDdGrLT--------D~~--Gr~VdFrNtiIImTSN~Gs-~~i~ 649 (786)
T COG0542 595 SVILLDEIEKAHPD--------------VFNLLLQVLDDGRLT--------DGQ--GRTVDFRNTIIIMTSNAGS-EEIL 649 (786)
T ss_pred eEEEechhhhcCHH--------------HHHHHHHHhcCCeee--------cCC--CCEEecceeEEEEecccch-HHHH
Confidence 89999999999998 999999999965543 333 3579999999999999543 2222
Q ss_pred HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
.. .. +...+ ..+...+.+++.+ +..|.|||++|++.+|.|.+|+++++.+|++..+..+
T Consensus 650 ~~-~~----~~~~~----------~~~~~~~~v~~~l------~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 650 RD-AD----GDDFA----------DKEALKEAVMEEL------KKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred hh-cc----ccccc----------hhhhHHHHHHHHH------HhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 21 00 00001 1112223333333 3369999999999999999999999999999555544
Q ss_pred HHHHHHHHHhCCCeEEeccccc
Q 008014 557 GKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 557 ~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
.+.+..+|+++++++++.
T Consensus 709 ----~~~L~~~~i~l~~s~~a~ 726 (786)
T COG0542 709 ----AKRLAERGITLELSDEAK 726 (786)
T ss_pred ----HHHHHhCCceEEECHHHH
Confidence 555668899999999874
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-24 Score=227.11 Aligned_cols=223 Identities=22% Similarity=0.332 Sum_probs=170.6
Q ss_pred cccChHHHHHHHHHHHHh--hHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYN--HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~--~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.++||+.|.++|.. .++..+.+.+++| ++||++||||||||+|||++|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 588999999999999974 4678899999988 7999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.|+.+.++ ++|.|++ ++.++-+|+.+++ ..|.+|||||||.|+..|+.. +.++.++++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhc
Confidence 999999999999 7899999 9999999999986 689999999999999987643 5667777899999999997
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhc
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~ 514 (581)
..-+. -..+-+.++++||+++ +|++++ |||.+.|..++|+.+. .+..+...+..+.
T Consensus 343 ~~~t~---------------e~~k~VmVLAATN~PWdiDEAlr-RRlEKRIyIPLP~~~~-------R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 343 VQGTL---------------ENSKVVMVLAATNFPWDIDEALR-RRLEKRIYIPLPDAEA-------RSALIKILLRSVE 399 (491)
T ss_pred ccccc---------------ccceeEEEEeccCCCcchHHHHH-HHHhhheeeeCCCHHH-------HHHHHHHhhcccc
Confidence 42211 0123377888999999 777775 6788899999998875 2222333333332
Q ss_pred chhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHH
Q 008014 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (581)
Q Consensus 515 ~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k 562 (581)
..+ .+.-+.+. -..+.|+-+|+..+.++....-.+++..
T Consensus 400 ~~~----~~~~~~la-----e~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 400 LDD----PVNLEDLA-----ERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCC----CccHHHHH-----HHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 211 11112221 1246788888888887766555554433
No 11
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-23 Score=240.44 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=174.0
Q ss_pred CCCCCCCCCC----CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGNK----FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~~----~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|.+.|.... ......+++.|.+.|+||++|++.|..+|..... +.. .++ .+.
T Consensus 432 ~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~----gl~--------~~~-----------kp~ 488 (758)
T PRK11034 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRA----GLG--------HEH-----------KPV 488 (758)
T ss_pred HHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhc----ccc--------CCC-----------CCc
Confidence 5777766542 2345568899999999999999999999852211 110 000 123
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhccCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~IL 399 (581)
+++||+||||||||++|+++|+.++.+++.++|+++.+ .+|+|.+....+.+.+. ....+||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~-------~~p~sVl 561 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVL 561 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-------hCCCcEE
Confidence 67999999999999999999999999999999988643 35777654444544432 2456899
Q ss_pred EehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhh
Q 008014 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (581)
Q Consensus 400 fIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~r 479 (581)
||||||+++++ +++.||++||++.++- .. ...++.+|++||+|+|.. .+...
T Consensus 562 llDEieka~~~--------------v~~~LLq~ld~G~ltd--------~~--g~~vd~rn~iiI~TsN~g-~~~~~--- 613 (758)
T PRK11034 562 LLDEIEKAHPD--------------VFNLLLQVMDNGTLTD--------NN--GRKADFRNVVLVMTTNAG-VRETE--- 613 (758)
T ss_pred EeccHhhhhHH--------------HHHHHHHHHhcCeeec--------CC--CceecCCCcEEEEeCCcC-HHHHh---
Confidence 99999999987 9999999999765541 11 235788999999999843 33332
Q ss_pred hcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008014 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (581)
Q Consensus 480 rfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q 559 (581)
...++|...+.. ....+. .+..|.|||++|++.+|.|.+|+++++.+|+. ..+++
T Consensus 614 --~~~~g~~~~~~~-------------~~~~~~------~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~----~~l~~ 668 (758)
T PRK11034 614 --RKSIGLIHQDNS-------------TDAMEE------IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVE 668 (758)
T ss_pred --hcccCcccchhh-------------HHHHHH------HHHhcCHHHHccCCEEEEcCCCCHHHHHHHHH----HHHHH
Confidence 234566422110 111111 22358999999999999999999999999998 45555
Q ss_pred HHHHHHhCCCeEEeccccc
Q 008014 560 YRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 560 ~~k~~~~~gi~l~~~~~~~ 578 (581)
..+.++.+|+++++++++.
T Consensus 669 ~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 669 LQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred HHHHHHHCCCCceECHHHH
Confidence 6667788999999998875
No 12
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-23 Score=227.79 Aligned_cols=168 Identities=27% Similarity=0.353 Sum_probs=138.2
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|+++.|++|++.|.+..+ ..+.+... -++++|||+||||||||++||++|++++
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---------------------~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGI---------------------SPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcC---------------------CCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 578899999999999974332 22332221 1348999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.+.+.++. +.|+|++ ++.++++|.+++. ..|+|||+||||++..+|+..+ ..+ .+++.++||..|||
T Consensus 494 ~nFlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g~~--~~v-~~RVlsqLLtEmDG 564 (693)
T KOG0730|consen 494 MNFLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGGSS--SGV-TDRVLSQLLTEMDG 564 (693)
T ss_pred CCeeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCCCc--cch-HHHHHHHHHHHccc
Confidence 999999999988 6799999 9999999999985 6889999999999999987322 233 34599999999997
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~ 494 (581)
. ...+++++|++||.++ +|.++ +.||+|+.|.++.|+.+.
T Consensus 565 ~-------------------e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 565 L-------------------EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred c-------------------cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 3 2346899999999999 66544 568999999999999874
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.8e-23 Score=225.42 Aligned_cols=221 Identities=20% Similarity=0.316 Sum_probs=164.9
Q ss_pred cccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|+++++.+|.++|..+.++ .+...+.. .+.+|||+||||||||+|||++|++.+
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---------------------~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGID---------------------APSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---------------------CCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 5789999999999999755433 33333222 248999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|+.|.+.++. ..|||++ ++.++.+|++++. ..|||||+||+|+|.+.|++.+ ...+.++.++||..|||
T Consensus 571 ~NFisVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 571 ANFISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDG 641 (802)
T ss_pred CceEeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcc
Confidence 999999999998 4699999 9999999999985 6899999999999999987644 34455699999999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcCh-HH-HHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~L-e~-~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
. -+-..+.+|++||.+|+ |. +++.||+|+.+..+.|+.++ ...+++.+
T Consensus 642 l-------------------~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e-----------R~~ILK~~ 691 (802)
T KOG0733|consen 642 L-------------------EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE-----------RVAILKTI 691 (802)
T ss_pred c-------------------ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH-----------HHHHHHHH
Confidence 3 12345788999999994 44 45688999999999998765 23344433
Q ss_pred cchhhhhcCCChhh-hcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 514 ESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 514 ~~~dl~~~gl~PEf-l~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.+. .+..+.++. +.-+...-..+.++-.||..++.|..-.-+++.
T Consensus 692 tkn--~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 692 TKN--TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred hcc--CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 321 011122221 222333345668999999999987655554443
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.2e-23 Score=223.10 Aligned_cols=220 Identities=21% Similarity=0.326 Sum_probs=165.7
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHH-hhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTt 345 (581)
.|++....--++|.|.|+||++|.+.|. ...+..+....-+. +++|||+||||||||+
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKL---------------------PKGVLLvGPPGTGKTl 352 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKL---------------------PKGVLLVGPPGTGKTL 352 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcC---------------------CCceEEeCCCCCchhH
Confidence 4455444434459999999999999995 22233333333332 3799999999999999
Q ss_pred HHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhH
Q 008014 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (581)
Q Consensus 346 LAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~v 425 (581)
|||++|.+.++||+...++++.+. |||.. ++.++++|..++. ..||||||||||++..+|...... ..++.
T Consensus 353 LARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk~----~APcIIFIDEiDavG~kR~~~~~~---y~kqT 423 (752)
T KOG0734|consen 353 LARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAKA----RAPCIIFIDEIDAVGGKRNPSDQH---YAKQT 423 (752)
T ss_pred HHHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHHh----cCCeEEEEechhhhcccCCccHHH---HHHHH
Confidence 999999999999999999999864 99998 8999999998863 689999999999999987653322 34558
Q ss_pred HHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhhhhcCCCchH
Q 008014 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVTDA 503 (581)
Q Consensus 426 q~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~~~~~~~~~~ 503 (581)
.++||..|||+.- ..-|++|++||+++ +|+++ +.+|||..|-.+.|+-.. ..
T Consensus 424 lNQLLvEmDGF~q-------------------NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~G-------R~ 477 (752)
T KOG0734|consen 424 LNQLLVEMDGFKQ-------------------NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRG-------RT 477 (752)
T ss_pred HHHHHHHhcCcCc-------------------CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCccc-------HH
Confidence 8999999998532 23488999999999 77754 678999999999998764 34
Q ss_pred HHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhh
Q 008014 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (581)
Q Consensus 504 ~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e 551 (581)
.++..++.++... ..+.|..+.|=. ..++-.||..++..
T Consensus 478 eIL~~yl~ki~~~----~~VD~~iiARGT-----~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 478 EILKLYLSKIPLD----EDVDPKIIARGT-----PGFSGADLANLVNQ 516 (752)
T ss_pred HHHHHHHhcCCcc----cCCCHhHhccCC-----CCCchHHHHHHHHH
Confidence 4455555555432 247788877742 35777777766663
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.4e-23 Score=227.58 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=162.4
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+++|.++.+.|..+.+ .++....+ +..+||||||||||||++|||+|.++.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglr----------------------kRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLR----------------------KRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhcccc----------------------ccceeEEECCCCCchHHHHHHHHhhce
Confidence 589999999999999974332 22222211 137999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|+.|.+.++.. .|+|++ +..++++|++|+. +.|||||+||+|++++.|+..+.++.++++ +.++||..|||
T Consensus 731 L~FlSVKGPELLN-MYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDg 803 (953)
T KOG0736|consen 731 LNFLSVKGPELLN-MYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDG 803 (953)
T ss_pred eeEEeecCHHHHH-HHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhc
Confidence 9999999999985 599999 9999999999985 899999999999999999999988899988 99999999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcCh-HH-HHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~L-e~-~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
-.- -+++.+.+|.|||++|+ |. +++.||||+-++.+.+..++ ....+++.+.+++
T Consensus 804 ls~-----------------~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e------sk~~vL~AlTrkF 860 (953)
T KOG0736|consen 804 LSD-----------------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE------SKLRVLEALTRKF 860 (953)
T ss_pred ccC-----------------CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH------HHHHHHHHHHHHc
Confidence 311 14667899999999994 43 56788999988887665442 1223333333333
Q ss_pred cchhhhhcCCC-hhhhcccCeEEEcCCCCHHHHHHHHhhhHH
Q 008014 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (581)
Q Consensus 514 ~~~dl~~~gl~-PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~ 554 (581)
.-++ ++. -|...+.+ ..++-.|+..|+....-
T Consensus 861 kLde----dVdL~eiAk~cp-----~~~TGADlYsLCSdA~l 893 (953)
T KOG0736|consen 861 KLDE----DVDLVEIAKKCP-----PNMTGADLYSLCSDAML 893 (953)
T ss_pred cCCC----CcCHHHHHhhCC-----cCCchhHHHHHHHHHHH
Confidence 3211 111 34444443 35778888877764433
No 16
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.89 E-value=5.4e-22 Score=230.90 Aligned_cols=253 Identities=23% Similarity=0.311 Sum_probs=175.3
Q ss_pred CCCCCCCCCCC----CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~~~----~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|.|.|+.... ..+..+++.|.+.|+||++|++.|..++..... +... ++ .+.
T Consensus 483 ~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~----gl~~--------~~-----------~p~ 539 (821)
T CHL00095 483 AWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV----GLKN--------PN-----------RPI 539 (821)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh----cccC--------CC-----------CCc
Confidence 57777766522 335568999999999999999999998852211 1111 11 112
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccc-----------ccccccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~-----------~~gyvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
+.+||+||+|||||++|++||+.+ ..++++++++++. ++||+|.+....+.+.... ...
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-------~p~ 612 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-------KPY 612 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-------CCC
Confidence 467899999999999999999987 4678999998763 2567877644445444332 345
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
+||+|||||++++. +++.|+++||++.++- .. ...++.+|.+||+|+|... +.+
T Consensus 613 ~VvllDeieka~~~--------------v~~~Llq~le~g~~~d--------~~--g~~v~~~~~i~I~Tsn~g~--~~i 666 (821)
T CHL00095 613 TVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTD--------SK--GRTIDFKNTLIIMTSNLGS--KVI 666 (821)
T ss_pred eEEEECChhhCCHH--------------HHHHHHHHhccCceec--------CC--CcEEecCceEEEEeCCcch--HHH
Confidence 89999999999988 9999999999665541 12 2468899999999999754 222
Q ss_pred HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
.. ....++|....... .... +..+.+.+. +++.+ .|.|||++|++.++.|.+|+.+++.+|++..+..+
T Consensus 667 ~~--~~~~~gf~~~~~~~---~~~~----~~~~~~~~~-~~~~~-~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 667 ET--NSGGLGFELSENQL---SEKQ----YKRLSNLVN-EELKQ-FFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred Hh--hccccCCccccccc---cccc----HHHHHHHHH-HHHHH-hcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 21 12346665422110 0001 122222222 22333 49999999999999999999999999999665555
Q ss_pred HHHHHHHHHhCCCeEEeccccc
Q 008014 557 GKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 557 ~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
.++ ++..|+++++++++.
T Consensus 736 ~~r----l~~~~i~l~~~~~~~ 753 (821)
T CHL00095 736 FKR----LNEQGIQLEVTERIK 753 (821)
T ss_pred HHH----HHHCCcEEEECHHHH
Confidence 444 567899999999875
No 17
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.89 E-value=2.6e-22 Score=230.97 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=171.4
Q ss_pred CCCCCCCC----CCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCc
Q 008014 256 WGGSNLGN----KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS 331 (581)
Q Consensus 256 ~~~~~~~~----~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~ 331 (581)
|.+.|... +......+++.|++.|+||++|++.|...+.. .+.+.. .+. .+.+
T Consensus 429 ~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~----~~~g~~--------~~~-----------~p~~ 485 (731)
T TIGR02639 429 MAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKR----SRAGLG--------NPN-----------KPVG 485 (731)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHH----HhcCCC--------CCC-----------CCce
Confidence 66666533 23456678999999999999999999988851 111111 000 1225
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhccCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILf 400 (581)
.+||+||||||||++|+++|+.++.+++.++++++.+ .+|+|.+..+.+.+.+. ....+||+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~-------~~p~~Vvl 558 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR-------KHPHCVLL 558 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH-------hCCCeEEE
Confidence 6889999999999999999999999999999988643 56788765555554433 24568999
Q ss_pred ehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh
Q 008014 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (581)
Q Consensus 401 IDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr 480 (581)
|||||+++++ +++.|+++||++.++ +. ....++.+|.++|+|+|... +...
T Consensus 559 lDEieka~~~--------------~~~~Ll~~ld~g~~~--------d~--~g~~vd~~~~iii~Tsn~g~-~~~~---- 609 (731)
T TIGR02639 559 LDEIEKAHPD--------------IYNILLQVMDYATLT--------DN--NGRKADFRNVILIMTSNAGA-SEMS---- 609 (731)
T ss_pred EechhhcCHH--------------HHHHHHHhhccCeee--------cC--CCcccCCCCCEEEECCCcch-hhhh----
Confidence 9999999987 999999999976553 11 12457899999999998642 1111
Q ss_pred cccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 481 fd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
...++|..... .+.+.+. .+..|.|||++|++.++.|.+|+.+++.+|+...+. +.
T Consensus 610 -~~~~~f~~~~~-------------~~~~~~~------~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~----~l 665 (731)
T TIGR02639 610 -KPPIGFGSENV-------------ESKSDKA------IKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVD----EL 665 (731)
T ss_pred -hccCCcchhhh-------------HHHHHHH------HHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHH----HH
Confidence 12355532110 1112222 233589999999999999999999999999995544 44
Q ss_pred HHHHHhCCCeEEeccccc
Q 008014 561 RKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 561 ~k~~~~~gi~l~~~~~~~ 578 (581)
.+.++..|+++++++++.
T Consensus 666 ~~~l~~~~~~l~i~~~a~ 683 (731)
T TIGR02639 666 SKQLNEKNIKLELTDDAK 683 (731)
T ss_pred HHHHHhCCCeEEeCHHHH
Confidence 555667899999998864
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-22 Score=205.40 Aligned_cols=166 Identities=25% Similarity=0.420 Sum_probs=141.2
Q ss_pred cccChHHHHHHHHHHHHhh--HHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+.||+.|+++|..+ ++.++.+.+.+| +++||+|||||||+.||+++|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw----------------------rgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW----------------------RGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcc----------------------eeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999754 577888888877 7999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
-+|+.++.++++ +.|.|++ ++.+..+|+.++. ..|+||||||||.++..|+. +.....+++...||..|.|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 7899999 9999999999885 68999999999999987653 2334456799999999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e 493 (581)
. -.+...++++.+||.++ +|.++ +|||++.|+.+.|...
T Consensus 263 V------------------G~d~~gvLVLgATNiPw~LDsAI-RRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 263 V------------------GNDNDGVLVLGATNIPWVLDSAI-RRRFEKRIYIPLPEAH 302 (439)
T ss_pred c------------------ccCCCceEEEecCCCchhHHHHH-HHHhhcceeccCCcHH
Confidence 2 12455688888999888 55555 6789999999999765
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-22 Score=226.59 Aligned_cols=171 Identities=26% Similarity=0.366 Sum_probs=141.8
Q ss_pred cccChHHHHHHHHHHHH-hhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|.|+++||++|.+.|. ..-+..|.+...+. ++++||+||||||||+||||+|.+.++
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi---------------------PkGvLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKI---------------------PKGVLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC---------------------cCceEEECCCCCcHHHHHHHHhcccCC
Confidence 59999999999999994 22234444444442 389999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh-hcccCCCCchhhHHHHHHHHHhC
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~-~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
||+.++++++.+ .++|.. ...++++|..++. ..|+|+||||||++...|. ....+.+.+++...++||..|||
T Consensus 371 PF~svSGSEFvE-~~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 371 PFFSVSGSEFVE-MFVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ceeeechHHHHH-Hhcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 999999999996 488887 7899999999874 6899999999999999985 23446677788899999999997
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
.. .++.++++++||.++ +|. +++.||||+.|..+.|+...
T Consensus 445 f~-------------------~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 445 FE-------------------TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred Cc-------------------CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 52 235689999999999 554 45678999999999998764
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=9.7e-22 Score=197.31 Aligned_cols=168 Identities=30% Similarity=0.435 Sum_probs=134.0
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
++||||++||+.-+..+. |...-... ..| .+++|||+||||||||++||++|++.+.
T Consensus 121 ddViGqEeAK~kcrli~~--yLenPe~F-g~W--------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME--YLENPERF-GDW--------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHH--HhhChHHh-ccc--------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 459999999997765553 22211112 233 3489999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
|++.+.++++. ..|||.. .+.+.++++.++ +..|||+||||+|+++-+|.-..+-+|++ + +.|+||..|||-
T Consensus 178 p~l~vkat~li-GehVGdg-ar~Ihely~rA~----~~aPcivFiDE~DAiaLdRryQelRGDVs-E-iVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELI-GEHVGDG-ARRIHELYERAR----KAAPCIVFIDELDAIALDRRYQELRGDVS-E-IVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHH-HHHhhhH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhhhhhHHHhcccHH-H-HHHHHHHhccCc
Confidence 99999999988 4699987 788999998886 47899999999999999987666666654 2 899999999962
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
....-++.||+||.+++-+..-+-||...|+|..|+.++
T Consensus 250 -------------------~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 250 -------------------KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred -------------------ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence 122347889999999966666667899999999998775
No 21
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.3e-21 Score=210.34 Aligned_cols=171 Identities=26% Similarity=0.393 Sum_probs=136.8
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+....+|.+++. |.+ ..+...+ + .|+++|||+||||||||.||+++|++++
T Consensus 191 diGG~d~~~~el~~li~-~i~~Pe~~~~lG--------------------v-~PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELII-HIKHPEVFSSLG--------------------V-RPPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred hccChHHHHHHHHHHHH-HhcCchhHhhcC--------------------C-CCCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 47999999999999885 222 1222222 1 2458999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.||+.++++++. +|+.|++ ++.++++|..+.. ..||||||||||++.++|+.. + ..+.+++..+||..||+
T Consensus 249 vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~a--q-reMErRiVaQLlt~mD~ 319 (802)
T KOG0733|consen 249 VPFLSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREEA--Q-REMERRIVAQLLTSMDE 319 (802)
T ss_pred CceEeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhhH--H-HHHHHHHHHHHHHhhhc
Confidence 999999999999 7999999 9999999999874 689999999999999998762 3 34455699999999995
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
-... .-+...+++|.|||.+| +|.+++ .||||+.|..+-|++..
T Consensus 320 l~~~---------------~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 320 LSNE---------------KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred cccc---------------ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 2110 01235589999999999 666554 46999999999998765
No 22
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.3e-21 Score=191.30 Aligned_cols=171 Identities=24% Similarity=0.373 Sum_probs=138.9
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+-.|+++++++..... .++.+... .++++||++||||||||+||+++|+...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigi---------------------dpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGI---------------------DPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCC---------------------CCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 589999999999999974332 12222221 1458999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|+++.+++++ .+|.|+. -+.++++|..++. ..|.||||||||+++.+|.+.+.|.|..-.++.-.||..|||
T Consensus 215 a~firvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 215 AAFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred hheeeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 999999999999 4799998 6889999988764 689999999999999999998888876655555666666775
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
+. .+.|+-+|+++|..+ ++. +++.+|.|++|+|+.|++-+
T Consensus 289 fd-------------------q~~nvkvimatnradtldpallrpgrldrkiefplpdrrq 330 (408)
T KOG0727|consen 289 FD-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 330 (408)
T ss_pred cC-------------------cccceEEEEecCcccccCHhhcCCccccccccCCCCchhh
Confidence 31 266888999999988 555 45678999999999999876
No 23
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.85 E-value=1.3e-20 Score=219.47 Aligned_cols=245 Identities=20% Similarity=0.337 Sum_probs=170.2
Q ss_pred CCCCCCCCCC----CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGNK----FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~~----~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|+|.|+..- ...+..+++.|.+.|+||++|++.+..++.. .+.+.. .+. .+.
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~----~~~gl~--------~~~-----------~p~ 596 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRT----ARAGLE--------DPR-----------KPL 596 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHH----HhcCCC--------CCC-----------CCc
Confidence 5888877642 3355668999999999999999999998852 111111 111 122
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
+.+||+||||||||.+|++||+.+ ...++.++++++.+ .||+|....+.+.+.+. ..+.
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~-------~~p~ 669 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR-------RKPY 669 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH-------hCCC
Confidence 457899999999999999999988 45789999987642 47888765555554433 2467
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
+||+||||+++++. +++.|+++|+.+.++ +.. ...++.+|.++|+|+|... +.+.
T Consensus 670 svvllDEieka~~~--------------v~~~Llq~ld~g~l~--------d~~--Gr~vd~~n~iiI~TSNlg~-~~~~ 724 (852)
T TIGR03345 670 SVVLLDEVEKAHPD--------------VLELFYQVFDKGVME--------DGE--GREIDFKNTVILLTSNAGS-DLIM 724 (852)
T ss_pred cEEEEechhhcCHH--------------HHHHHHHHhhcceee--------cCC--CcEEeccccEEEEeCCCch-HHHH
Confidence 89999999999987 999999999965543 222 2468999999999999643 2222
Q ss_pred HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
.. ..+.. ..+. .+.....+.+.+. ..|.|||++|++ ++.|.+|+.+++.+|+...+..+
T Consensus 725 ~~-~~~~~---~~~~----------~~~~~~~~~~~~~------~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 725 AL-CADPE---TAPD----------PEALLEALRPELL------KVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred Hh-ccCcc---cCcc----------hHHHHHHHHHHHH------HhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 11 10000 0011 1111222332222 248999999997 89999999999999999777766
Q ss_pred HHHHHHHHHhCCCeEEeccccc
Q 008014 557 GKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 557 ~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
.+++. +..|+++++++++.
T Consensus 784 ~~rl~---~~~gi~l~i~d~a~ 802 (852)
T TIGR03345 784 ARRLK---ENHGAELVYSEALV 802 (852)
T ss_pred HHHHH---HhcCceEEECHHHH
Confidence 55542 24599999998875
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-21 Score=213.88 Aligned_cols=171 Identities=26% Similarity=0.344 Sum_probs=142.6
Q ss_pred cccChHHHHHHHHHHHH-hhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|.|.+++|+++.+.|. ...+..+.....+. ++++||+||||||||+|||++|.+.+.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGaki---------------------PkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKI---------------------PKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhccccc---------------------ccceeEecCCCCCcHHHHHHHhcccCC
Confidence 58999999999999994 22233333333332 379999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
||+.++++++.+. |||.. .+.++++|.+++ +..|||+||||||++...|..+.++++..+|+..++||..|||.
T Consensus 210 PFf~iSGS~FVem-fVGvG-AsRVRdLF~qAk----k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 210 PFFSISGSDFVEM-FVGVG-ASRVRDLFEQAK----KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred Cceeccchhhhhh-hcCCC-cHHHHHHHHHhh----ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 9999999999964 99998 889999999986 36899999999999999998777788888888999999999974
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
. ..+.+++|++||+++ +|. +++.+|||+.|-.+.|+-..
T Consensus 284 ~-------------------~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 284 G-------------------GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred C-------------------CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 2 124588899999999 544 55788999999999998543
No 25
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.84 E-value=4.3e-21 Score=184.53 Aligned_cols=165 Identities=41% Similarity=0.600 Sum_probs=121.4
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCC----CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~----~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
..++||.||+|||||.+|+++|+.+.. +++.++++++.+ +++....+..+...+...+.....+||||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 478999999999999999999999985 999999999875 233344455555555555666677899999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCC
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~I 485 (581)
|+++. .+.+.|++++.+|+.||++||++.+.- .++ +.++++|++||||+|+.........+..
T Consensus 79 Ka~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d--------~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---- 141 (171)
T PF07724_consen 79 KAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTD--------SYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG---- 141 (171)
T ss_dssp GCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEE--------TTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC----
T ss_pred hcccc---ccccchhhHHHHHHHHHHHhcccceec--------ccc--eEEEeCCceEEEecccccchhhhhhccc----
Confidence 99986 456788888899999999999877752 222 5799999999999999885544432211
Q ss_pred CCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeE
Q 008014 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (581)
Q Consensus 486 gF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~i 534 (581)
. .. .........++.+++|.|||++||+.|
T Consensus 142 ---~----------~~------~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ---E----------AI------EQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ---T----------CC------HHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ---c----------cc------HHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0 00 011111224567779999999999875
No 26
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.3e-21 Score=189.73 Aligned_cols=170 Identities=24% Similarity=0.411 Sum_probs=136.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|-|.+..++++++.+..+.+. ++.++.+.++. +.++||+||||||||+||+++|......
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKH------------------PELF~aLGIaQ-PKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKH------------------PELFEALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred HhccHHHHHHHHHHHHhccccC------------------HHHHHhcCCCC-CcceEEecCCCCchhHHHHHHHhhcceE
Confidence 5789999999999999744332 12222223333 3789999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh---
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE--- 434 (581)
|++++++++. ..|+|+. .+.++++|..++. ..|+|+|+||||++...|..++.|+|.. +|.++|++|.
T Consensus 209 firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnqld 279 (404)
T KOG0728|consen 209 FIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQLD 279 (404)
T ss_pred EEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhcc
Confidence 9999999999 4799998 8999999999875 6899999999999999998887776654 6666666555
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
|+ -.++|+-+|+++|..+ +|. +++.+|.|++|+|+.|+++.
T Consensus 280 gf-------------------eatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 280 GF-------------------EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred cc-------------------ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 32 3578899999999999 444 45678999999999998774
No 27
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.81 E-value=4.8e-19 Score=207.05 Aligned_cols=241 Identities=23% Similarity=0.315 Sum_probs=165.7
Q ss_pred CCCCCCCCC----CCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGN----KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~----~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|.|.+... +......+++.|.+.|+||+.|++.+...+.. .+.+.. .++ .+.
T Consensus 539 ~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~----~~~gl~--------~~~-----------~p~ 595 (852)
T TIGR03346 539 RWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRR----SRAGLS--------DPN-----------RPI 595 (852)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHH----HhccCC--------CCC-----------CCC
Confidence 466776654 23345568889999999999999999999852 111111 111 122
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
+.+||+||+|||||++|++||+.+ +.+++.++++++.+ .+|+|......+.+.... ...
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-------~p~ 668 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-------KPY 668 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc-------CCC
Confidence 568899999999999999999987 46899999987532 356666533444443322 345
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
+|||||||+++++. +++.||++||.+.++ + .....++.+|.+||+|+|... +...
T Consensus 669 ~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~--------d--~~g~~vd~rn~iiI~TSn~g~-~~~~ 723 (852)
T TIGR03346 669 SVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLT--------D--GQGRTVDFRNTVIIMTSNLGS-QFIQ 723 (852)
T ss_pred cEEEEeccccCCHH--------------HHHHHHHHHhcCcee--------c--CCCeEEecCCcEEEEeCCcch-HhHh
Confidence 79999999999988 999999999965543 1 123578899999999999543 2111
Q ss_pred HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
.. . ... ..+.....+++.+ +..|.|||++|++.++.|.+++.+++.+|+...+..+
T Consensus 724 ~~--~------~~~----------~~~~~~~~~~~~~------~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 724 EL--A------GGD----------DYEEMREAVMEVL------RAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred hh--c------ccc----------cHHHHHHHHHHHH------HhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 10 0 000 0111112222222 2358999999999999999999999999999665554
Q ss_pred HHHHHHHHHhCCCeEEeccccc
Q 008014 557 GKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 557 ~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
.+.++..|+.+++++++.
T Consensus 780 ----~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 780 ----RKRLAERKITLELSDAAL 797 (852)
T ss_pred ----HHHHHHCCCeecCCHHHH
Confidence 444556789999988764
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.5e-19 Score=196.28 Aligned_cols=221 Identities=23% Similarity=0.259 Sum_probs=156.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
++.|.+.+|..+.+.+....++...... . .+ .++.++||+||||||||++|+++|.+++.+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~--~----------------~~-~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRK--L----------------GL-RPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHh--c----------------CC-CCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 3688999999999999754433221110 0 00 123689999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.++++++. .+|+|++ ++.++++|..++ +..|+||||||+|++...|.... +.+.+++.++||..|+|-
T Consensus 304 fi~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~- 373 (494)
T COG0464 304 FISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGI- 373 (494)
T ss_pred EEEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCC-
Confidence 9999999888 6899998 999999999887 36899999999999999875432 222356999999999952
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcc
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~ 515 (581)
-..+++++|++||.++ +++++.+ +||+..+.++.|+.+.. .+-+...+..
T Consensus 374 ------------------e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r----------~~i~~~~~~~ 425 (494)
T COG0464 374 ------------------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER----------LEIFKIHLRD 425 (494)
T ss_pred ------------------CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH----------HHHHHHHhcc
Confidence 2345588899999999 5555443 69999999999998751 1222222221
Q ss_pred hhh-hhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 516 SDL-IAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 516 ~dl-~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.+. ....+.-+.+.+ .-+.++..|+..++.+......++.
T Consensus 426 ~~~~~~~~~~~~~l~~-----~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 426 KKPPLAEDVDLEELAE-----ITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred cCCcchhhhhHHHHHH-----HhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 010 000111122222 2334899999999998776665554
No 29
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.3e-20 Score=185.34 Aligned_cols=174 Identities=23% Similarity=0.329 Sum_probs=135.1
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
.+|-|..+.++.|.+.|...... ... +-.+.+ .++++||++||||||||++||++|+..+.
T Consensus 177 ~dvggckeqieklrevve~pll~--per----------------fv~lgi-dppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLH--PER----------------FVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred ccccchHHHHHHHHHHHhccccC--HHH----------------HhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 35899999999999999743211 110 000111 14579999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
.|+++-+++++ ..|+|+. .+.++++|+.++. ...||||+||||++...|.+.+.+.|.. +|.++|+++..-
T Consensus 238 cfirvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggdne---vqrtmleli~ql 308 (435)
T KOG0729|consen 238 CFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDNE---VQRTMLELINQL 308 (435)
T ss_pred eEEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcHH---HHHHHHHHHHhc
Confidence 99999999999 4799998 8999999999875 5679999999999999998887777654 777777666510
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
..++. -.|+-+++++|.++ ++. +++.+|.|++++|+.|+.+.
T Consensus 309 --------dgfdp--------rgnikvlmatnrpdtldpallrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 309 --------DGFDP--------RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred --------cCCCC--------CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccc
Confidence 00222 34677889999998 555 45678999999999999874
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.80 E-value=9.6e-19 Score=193.27 Aligned_cols=170 Identities=24% Similarity=0.307 Sum_probs=128.2
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|+|++++|+++.+.+.. ++ ..+..... ..+.++||+||||||||++|+++|..++
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~---------------------~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGA---------------------KIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC---------------------CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 379999999999987752 11 11111111 1236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|.. .+.++.+|..+.. ..|+||||||||.+...+.....+.+...+.+.+.||..||+
T Consensus 114 ~~~~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 114 VPFFSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred CCeeeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 999999999877 3577776 6778888887643 578999999999999887653333344445688899999984
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. ....++++|++||.++ ++.++. .+||+..|.++.|+.+.
T Consensus 188 ~-------------------~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 188 F-------------------GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred c-------------------cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 2 1234578899999877 666665 46999999999999764
No 31
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.79 E-value=2e-18 Score=201.67 Aligned_cols=241 Identities=24% Similarity=0.361 Sum_probs=164.0
Q ss_pred CCCCCCCCCCC----CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008014 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (581)
Q Consensus 255 ~~~~~~~~~~~----~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~ 330 (581)
.|+|.|+.... ..+..+++.|.+.|+||+.+++.|...|. +...+.. .++. +.
T Consensus 542 ~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~----~~~~gl~--------~~~~-----------p~ 598 (857)
T PRK10865 542 RWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIR----RSRAGLS--------DPNR-----------PI 598 (857)
T ss_pred HHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHH----HHHhccc--------CCCC-----------CC
Confidence 68888877533 23456889999999999999999999985 2111111 1110 12
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
+.+||+||+|||||++|++||+.+ +.+++.++++++.+ .+|+|....+.+.+... ....
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p~ 671 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR-------RRPY 671 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH-------hCCC
Confidence 568899999999999999999887 45799999987542 34566543333333322 2345
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
+||+||||+++.+. +++.|+++|+.+.++ + +....++.+|.++|+|+|... + .+
T Consensus 672 ~vLllDEieka~~~--------------v~~~Ll~ile~g~l~--------d--~~gr~vd~rn~iiI~TSN~g~-~-~~ 725 (857)
T PRK10865 672 SVILLDEVEKAHPD--------------VFNILLQVLDDGRLT--------D--GQGRTVDFRNTVVIMTSNLGS-D-LI 725 (857)
T ss_pred CeEEEeehhhCCHH--------------HHHHHHHHHhhCcee--------c--CCceEEeecccEEEEeCCcch-H-HH
Confidence 89999999999987 999999999955442 1 123568889999999999642 1 11
Q ss_pred HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
.+ + |+... .....+.+... .+..|.|||++|++.++.|.+++.+++.+|+...+..+
T Consensus 726 ~~-~------~~~~~----------~~~~~~~~~~~------~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 726 QE-R------FGELD----------YAHMKELVLGV------VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred HH-h------ccccc----------hHHHHHHHHHH------HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 11 1 11111 11111222222 23358999999999999999999999999999655544
Q ss_pred HHHHHHHHHhCCCeEEeccccc
Q 008014 557 GKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 557 ~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
. +.++..|+.+.+++++.
T Consensus 783 ~----~rl~~~gi~l~is~~al 800 (857)
T PRK10865 783 Y----KRLEERGYEIHISDEAL 800 (857)
T ss_pred H----HHHHhCCCcCcCCHHHH
Confidence 3 33456788888888764
No 32
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=1.6e-18 Score=179.49 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=135.2
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHh-hHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCC
Q 008014 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (581)
Q Consensus 264 ~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~-~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTG 342 (581)
.....+++.+.|++.++|++.+|++|.+++.. .+.+.+..... ..+ -+..++||+||||||
T Consensus 10 ~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~------~~~------------~~~~~ill~G~pGtG 71 (287)
T CHL00181 10 EKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGL------TSS------------NPGLHMSFTGSPGTG 71 (287)
T ss_pred cccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCC------CCC------------CCCceEEEECCCCCC
Confidence 34567889999998899999999999988742 12222221111 000 122579999999999
Q ss_pred hHHHHHHHHHHh-------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcc
Q 008014 343 KTLLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (581)
Q Consensus 343 KTtLAraLA~~l-------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~ 415 (581)
||++|+++|+.+ ..+++.++++++. ..|+|+. +....+.+.. +.++||||||++.+...+.
T Consensus 72 KT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~-------a~ggVLfIDE~~~l~~~~~--- 139 (287)
T CHL00181 72 KTTVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKK-------AMGGVLFIDEAYYLYKPDN--- 139 (287)
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHH-------ccCCEEEEEccchhccCCC---
Confidence 999999999876 2368889988876 4588876 3444455443 4568999999999864321
Q ss_pred cCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhh
Q 008014 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (581)
Q Consensus 416 ~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~ 495 (581)
..+ .+..+++.|+++||.. ..++++|++|+...++...
T Consensus 140 -~~~-~~~e~~~~L~~~me~~---------------------~~~~~vI~ag~~~~~~~~~------------------- 177 (287)
T CHL00181 140 -ERD-YGSEAIEILLQVMENQ---------------------RDDLVVIFAGYKDRMDKFY------------------- 177 (287)
T ss_pred -ccc-hHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 112 2344899999999831 2457788887643222111
Q ss_pred hcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHH
Q 008014 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (581)
Q Consensus 496 ~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~ 554 (581)
...|++.+||+.++.|++++.+++.+|+...+.
T Consensus 178 --------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 178 --------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred --------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 146899999999999999999999999985544
No 33
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5e-19 Score=195.90 Aligned_cols=168 Identities=27% Similarity=0.399 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHHh--hHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYN--HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~--~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|..++|..|.+.+.+ .|+.++.....+. +.+|||+||||||||.||-++|..++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 478999999999999973 4566665544332 27999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|+.+.+.++. .+|+|.+ +..++.+|.+|+ ++.|||||+||+|.++++|+..+. .+++ ++.++||..|||
T Consensus 727 ~~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhDsT--GVTD-RVVNQlLTelDG 797 (952)
T KOG0735|consen 727 LRFISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHDST--GVTD-RVVNQLLTELDG 797 (952)
T ss_pred eeEEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCCCC--CchH-HHHHHHHHhhcc
Confidence 999999999998 6799999 999999999987 489999999999999999864332 2333 499999999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
-.. .+-+.++++|++++ +|. +++.||+|+.+..+.|+..+
T Consensus 798 ~Eg-------------------l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 798 AEG-------------------LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred ccc-------------------cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 321 23466788888888 444 45678999999999998764
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.79 E-value=1.1e-18 Score=201.16 Aligned_cols=216 Identities=21% Similarity=0.297 Sum_probs=153.6
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++.+|+.|.+.+...+ +..+.....+ ++.++||+||||||||++|+++|.+++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~---------------------~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIR---------------------PPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC---------------------CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 48999999999999986432 2222222111 236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++.+|..++. ..|+||||||||++.+.|+... .....+++.++||..|||
T Consensus 513 ~~fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg 584 (733)
T TIGR01243 513 ANFIAVRGPEIL-SKWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDG 584 (733)
T ss_pred CCEEEEehHHHh-hcccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhc
Confidence 999999999987 5799998 8889999988763 6789999999999998764321 122334588999999995
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
. ....++++|+|||.++ ++.++.+ +||+..|.++.|+.+. ..++++..
T Consensus 585 ~-------------------~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~-----------R~~i~~~~ 634 (733)
T TIGR01243 585 I-------------------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA-----------RKEIFKIH 634 (733)
T ss_pred c-------------------cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHH-----------HHHHHHHH
Confidence 2 1245688999999988 6666655 7999999999999775 22333221
Q ss_pred cc-hhhhhcCCC-hhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008014 514 ES-SDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (581)
Q Consensus 514 ~~-~dl~~~gl~-PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q 559 (581)
.. ..+.. .+. .++..+ .+.++-.++..++.+.....+++
T Consensus 635 ~~~~~~~~-~~~l~~la~~------t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 635 TRSMPLAE-DVDLEELAEM------TEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred hcCCCCCc-cCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 11 11000 111 122221 34688899988888766554444
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=1.7e-18 Score=172.48 Aligned_cols=168 Identities=28% Similarity=0.447 Sum_probs=107.3
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|++ ++||++.+..+...+.....+ .. .-.|+||+||||+||||||+.||++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r-----~~----------------------~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR-----GE----------------------ALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT-----TS-------------------------EEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc-----CC----------------------CcceEEEECCCccchhHHHHHHHhc
Confidence 3444 799999999988776411100 00 1269999999999999999999999
Q ss_pred hCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 354 l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
++.+|..+++..+... .-+..++... ..+.|||||||+++.+. +|+.|+..|
T Consensus 74 ~~~~~~~~sg~~i~k~--------~dl~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~Llpam 125 (233)
T PF05496_consen 74 LGVNFKITSGPAIEKA--------GDLAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAM 125 (233)
T ss_dssp CT--EEEEECCC--SC--------HHHHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHH
T ss_pred cCCCeEeccchhhhhH--------HHHHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHh
Confidence 9999998888654421 1122222221 35679999999999998 999999999
Q ss_pred hCceeeec-CCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhh
Q 008014 434 EGTVVNVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (581)
Q Consensus 434 Eg~~v~ip-e~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~ 512 (581)
|++.+.+- ..| ...+.+.++...+-+|.||+..+
T Consensus 126 Ed~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g----------------------------------------- 160 (233)
T PF05496_consen 126 EDGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG----------------------------------------- 160 (233)
T ss_dssp HCSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC-----------------------------------------
T ss_pred ccCeEEEEeccc----cccceeeccCCCceEeeeecccc-----------------------------------------
Confidence 98877541 111 22345667777788888876432
Q ss_pred hcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhh
Q 008014 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (581)
Q Consensus 513 v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e 551 (581)
-+.+.+.+||..+..++.|+.+|+.+|++.
T Consensus 161 ---------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 161 ---------LLSSPLRDRFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp ---------CTSHCCCTTSSEEEE----THHHHHHHHHH
T ss_pred ---------ccchhHHhhcceecchhcCCHHHHHHHHHH
Confidence 266899999999999999999999999984
No 36
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.78 E-value=3e-18 Score=184.78 Aligned_cols=171 Identities=25% Similarity=0.382 Sum_probs=126.8
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++.+|++|.+.+...+. ..+...+.. ++.++||+||||||||++|+++|+.++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~---------------------~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGID---------------------PPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC---------------------CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999974433 222222211 247899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.+.++++. ..|+|+. ...++++|..+.. ..|+||||||||.+...|.+...+.+....++...|+..|++
T Consensus 205 ~~fi~i~~s~l~-~k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 205 ATFIRVVGSEFV-QKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred CCEEEEehHHHH-HHhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 999999998877 4688887 6778888876643 578999999999998876544333332223345566666663
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++.+|++||..+ ++.++. .+||+..|.|+.|+.+.
T Consensus 279 ~-------------------~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 279 F-------------------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred c-------------------CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 1 1134577888888877 666554 47999999999998765
No 37
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=6.3e-18 Score=174.60 Aligned_cols=194 Identities=19% Similarity=0.253 Sum_probs=136.9
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHh-hHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCC
Q 008014 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (581)
Q Consensus 264 ~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~-~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTG 342 (581)
+....+++.+.|++.++|++++|+.|.+.+.. .+++.+...... ...+..+++|+||||||
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~------------------~~~~~~~vll~G~pGTG 70 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLA------------------SAAPTLHMSFTGNPGTG 70 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCC------------------cCCCCceEEEEcCCCCC
Confidence 34567889999998899999999999988752 122222221111 11123589999999999
Q ss_pred hHHHHHHHHHHhC-------CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcc
Q 008014 343 KTLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (581)
Q Consensus 343 KTtLAraLA~~l~-------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~ 415 (581)
||++|+++|+.+. .+++.+++.++.. .|+|++ ...+.+.++. +.++||||||++.+...+.
T Consensus 71 KT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~-~~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~--- 138 (284)
T TIGR02880 71 KTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEILKR-------AMGGVLFIDEAYYLYRPDN--- 138 (284)
T ss_pred HHHHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccc-hHHHHHHHHH-------ccCcEEEEechhhhccCCC---
Confidence 9999999998772 3799999988773 688876 4445555543 4569999999999864321
Q ss_pred cCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhh
Q 008014 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (581)
Q Consensus 416 ~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~ 495 (581)
. ...+..+++.|++.|+.. ..++++|++++...++...
T Consensus 139 -~-~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~------------------- 176 (284)
T TIGR02880 139 -E-RDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF------------------- 176 (284)
T ss_pred -c-cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 1 112334899999999831 2457778887633211111
Q ss_pred hcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHH
Q 008014 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (581)
Q Consensus 496 ~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~ 555 (581)
.+.|++.+||+..+.|++|+.+|+.+|+...+..
T Consensus 177 --------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 177 --------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred --------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1569999999999999999999999998855544
No 38
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5e-18 Score=189.16 Aligned_cols=167 Identities=26% Similarity=0.376 Sum_probs=132.9
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008014 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (581)
Q Consensus 254 ~~~~~~~~~~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~V 333 (581)
-+|+.. ..+....++.++.||++..|.+++|+++.+.+.-+-.. .. -++++
T Consensus 302 lPW~~~--sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~------~~---------------------~kGpI 352 (782)
T COG0466 302 LPWGKR--SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT------KK---------------------LKGPI 352 (782)
T ss_pred CCCccc--cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh------cc---------------------CCCcE
Confidence 577543 33567788999999999999999999999998521111 00 12456
Q ss_pred E-EECCCCCChHHHHHHHHHHhCCCeEEeccccccc--------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 334 L-LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 334 L-L~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~--------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
| |+||||+|||+|++.||+.++..|++++..-+.+ .-|+|.-+++.++.+-... ..+.+++||||
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEI 426 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEI 426 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeech
Confidence 6 9999999999999999999999999999877653 3488988777776653322 46789999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
|+++.+ ..++ -.++||++|| ||.+..+.+|.-.+.+|.++++||||+|..+
T Consensus 427 DKm~ss---------~rGD-PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 427 DKMGSS---------FRGD-PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred hhccCC---------CCCC-hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc
Confidence 999765 1122 5789999999 9999999999999999999999999999755
No 39
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.3e-19 Score=180.58 Aligned_cols=171 Identities=26% Similarity=0.385 Sum_probs=134.8
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|-|.+..++++++.|..+. +.+|.....+ ++.+|+|+|+||||||+||+++|+...
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGik---------------------pPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIK---------------------PPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC---------------------CCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 48999999999999997443 3455554443 348999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+++-++++. ..|.|.. .+.++++|..+.. ..|+|+||||||++..+|-+.+.++. +.+|.++|++|..
T Consensus 245 ATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLNQ 315 (440)
T KOG0726|consen 245 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLNQ 315 (440)
T ss_pred hhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHHh
Confidence 999999999998 4799998 7899999998874 68999999999999999887665544 2378877777761
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
- ..++.+ .++-+|++||..+ +|. +++.+|.|++|+|+.|++..
T Consensus 316 l--------dGFdsr--------gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 316 L--------DGFDSR--------GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred c--------cCcccc--------CCeEEEEecccccccCHhhcCCCccccccccCCCchhh
Confidence 0 012222 3466778888776 554 56789999999999999764
No 40
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-18 Score=174.67 Aligned_cols=170 Identities=24% Similarity=0.373 Sum_probs=130.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|.|.+..+++|.+++...+.+.-. +.++.+. +++++|++||||||||++||+.|...+.+
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ek------------------F~~lgi~-pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEK------------------FENLGIR-PPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHH------------------HHhcCCC-CCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 5899999999999999644332110 1111111 34799999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh---
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE--- 434 (581)
|+.+.+..+++ .|+|.. .+.+++.|..+.. ..|+||||||+|++..+|.+..-.+| +.+|.++|++|.
T Consensus 233 FLKLAgPQLVQ-MfIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLNQLD 303 (424)
T KOG0652|consen 233 FLKLAGPQLVQ-MFIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLNQLD 303 (424)
T ss_pred HHHhcchHHHh-hhhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHHhhc
Confidence 99999999885 599998 8899999988764 68999999999999999876433333 347777777666
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcCh-HH-HHHhhhcccCCCCCChhhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~L-e~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
|+ -....+-+|+++|..++ +. +++.+|.|++|+|+.|.++.
T Consensus 304 GF-------------------ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 304 GF-------------------SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred CC-------------------CCccceEEEeecccccccCHHHhhcccccccccCCCCChHH
Confidence 32 12345778899999884 33 56788999999999998774
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.77 E-value=8.4e-18 Score=177.62 Aligned_cols=151 Identities=14% Similarity=0.233 Sum_probs=112.6
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhH-HhhccCeEEehhhhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l-~~a~~~ILfIDEID~l~ 408 (581)
+..++|+||||||||++|+++|+.++.+++.++++++. .+|+|++ ++.++++|..|.... .+.+||||||||||++.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 47888999999999999999999999999999999998 6899998 999999999886432 34579999999999999
Q ss_pred hhhhhcccCCCCchhhHHHHHHHHHhCce-eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCC
Q 008014 409 KKAESLNISRDVSGEGVQQALLKMLEGTV-VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSI 485 (581)
Q Consensus 409 ~~r~~~~~~~d~~~~~vq~aLL~lLEg~~-v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~I 485 (581)
+.|.. .+..+..+.+..+||.+||+-+ +.+ +| .+. ..-....+.+|+|||.++ ++.++ +.+|||+.+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G-~w~-----~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i 295 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GG-DWR-----EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cc-ccc-----ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee
Confidence 98752 2333333445689999999521 111 11 000 011245688899999998 56544 456999865
Q ss_pred CCCChhhhh
Q 008014 486 GFGAPVRAN 494 (581)
Q Consensus 486 gF~~P~~e~ 494 (581)
..|+++.
T Consensus 296 --~lPd~e~ 302 (413)
T PLN00020 296 --WAPTRED 302 (413)
T ss_pred --CCCCHHH
Confidence 4677664
No 42
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.76 E-value=7.4e-18 Score=181.22 Aligned_cols=171 Identities=26% Similarity=0.398 Sum_probs=124.0
Q ss_pred cccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+++++.|.+.+.....+ .+...+.. ++.++||+||||||||++|+++|+.++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~---------------------~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIE---------------------PPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC---------------------CCCceEEECCCCCChHHHHHHHHHHhC
Confidence 5899999999999998643322 22211111 237899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+...+.+.+ ..++..|++++..
T Consensus 191 ~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~ 261 (389)
T PRK03992 191 ATFIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAE 261 (389)
T ss_pred CCEEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHh
Confidence 999999999987 4688887 6778888877653 57899999999999887654332222 2255555555541
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.. + .....++.+|+++|..+ ++.++. .+||+..|.|+.|+.+.
T Consensus 262 ld------~----------~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 262 MD------G----------FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred cc------c----------cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHH
Confidence 00 0 01234678889998877 666654 36999999999999775
No 43
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2e-17 Score=168.33 Aligned_cols=183 Identities=17% Similarity=0.353 Sum_probs=124.8
Q ss_pred HHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHH
Q 008014 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 272 ~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA 351 (581)
.++|++ ++|++.+|+.|.+.+... ......... +. .......+++|+||||||||++|+++|
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~--~~~~~~~~~---g~------------~~~~~~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWI--QINEKRKEE---GL------------KTSKQVLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHH--HHHHHHHHc---CC------------CCCCCcceEEEEcCCCCCHHHHHHHHH
Confidence 356677 799999999999887421 111111100 00 011123689999999999999999999
Q ss_pred HHh-------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 352 RYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 352 ~~l-------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
+.+ ..+++.++++++. ..|+|+. ...+.+++..+ .++||||||+|.+... +....+..
T Consensus 64 ~~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~ 128 (261)
T TIGR02881 64 KLFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKE 128 (261)
T ss_pred HHHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHH
Confidence 875 2468888888877 4688886 55666666543 4689999999999642 11112234
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHH
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~ 504 (581)
+++.|++.||.. ..++++|+++...+++...
T Consensus 129 ~i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~---------------------------- 159 (261)
T TIGR02881 129 AIDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL---------------------------- 159 (261)
T ss_pred HHHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH----------------------------
Confidence 789999999831 2346667776543322111
Q ss_pred HHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhH
Q 008014 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (581)
Q Consensus 505 ~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l 553 (581)
.+.|.+.+||+..+.|++++.+++.+|+....
T Consensus 160 -----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 160 -----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred -----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 15689999999999999999999999988443
No 44
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.76 E-value=1.4e-17 Score=183.61 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=124.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|.|++.+|+.+.+.... +......... ..++++||+||||||||++|+++|..++.+
T Consensus 229 dvgGl~~lK~~l~~~~~~-~~~~~~~~gl---------------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTS-FSKQASNYGL---------------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHH-hhHHHHhcCC---------------------CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 489999999988765431 1111111100 124799999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.++++.+. .+|+|++ +..++++|..++. ..|+||||||||++...+...+ ......++.+.|+..|++
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~-- 356 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE-- 356 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--
Confidence 9999999887 5799998 7888999887653 5899999999999987533211 112234578888888872
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~ 494 (581)
...++++|+|+|..+ +++++ +.+|||..+.++.|+.+.
T Consensus 357 -------------------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 357 -------------------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred -------------------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 124578889998887 66655 457999999999999775
No 45
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.9e-18 Score=194.67 Aligned_cols=252 Identities=21% Similarity=0.304 Sum_probs=172.2
Q ss_pred CCCCCCCCCCCCC----CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccc
Q 008014 253 DGCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL 328 (581)
Q Consensus 253 ~~~~~~~~~~~~~----~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v 328 (581)
...|.+++..... .....+++.|.+.|+||++|+..|.++|. +-+.+...+ -
T Consensus 534 ~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~----~sr~gl~~~--------------------~ 589 (898)
T KOG1051|consen 534 VSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIR----RSRAGLKDP--------------------N 589 (898)
T ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHH----hhhcccCCC--------------------C
Confidence 4678887776643 35666999999999999999999999995 111111111 1
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc--------cccccccchhhhHHHHHhhhhhhhHHhhccC
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL--------TQAGYVGEDVESILYKLLTVSDYNVAAAQQG 397 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l--------~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ 397 (581)
+...++|.||.|+|||.||+++|..+ ...|++++++++ .+++|+|.+....+.+.+.+. ..+
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrrr-------P~s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRR-------PYS 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcC-------Cce
Confidence 23678899999999999999999988 456899999972 337899999777887776654 458
Q ss_pred eEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHH
Q 008014 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (581)
Q Consensus 398 ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~ 477 (581)
||+|||||++++. +++.|+++||.+.+ .+.++ ..|+.+|++||+|+|... +....
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD~Grl--------tDs~G--r~Vd~kN~I~IMTsn~~~-~~i~~ 717 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLDRGRL--------TDSHG--REVDFKNAIFIMTSNVGS-SAIAN 717 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHhcCcc--------ccCCC--cEeeccceEEEEecccch-Hhhhc
Confidence 9999999999998 99999999995443 23333 479999999999998532 11221
Q ss_pred hhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhh----cCCChhhhcccCeEEEcCCCCHHHHHHHHhhhH
Q 008014 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (581)
Q Consensus 478 ~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~----~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l 553 (581)
. .. ..++-.-+.++ .........++ .+..+ ..+.|||++|++.++.+.+++.+++.+|+....
T Consensus 718 ~-~~--~~~~l~~~~~~----~~~~~~~k~~v------~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 718 D-AS--LEEKLLDMDEK----RGSYRLKKVQV------SDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred c-cc--cccccccchhh----hhhhhhhhhhh------hhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 1 11 11111111110 00001111111 22222 458999999999999999999999999999666
Q ss_pred HHHHHHHHHHHHhCCCeEEecccc
Q 008014 554 NALGKQYRKMFQMNGQAAFYGKCF 577 (581)
Q Consensus 554 ~~l~~q~~k~~~~~gi~l~~~~~~ 577 (581)
....+.+ +.+++.+.+++.+
T Consensus 785 ~e~~~r~----~~~~~~~~v~~~~ 804 (898)
T KOG1051|consen 785 TEIEKRL----EERELLLLVTDRV 804 (898)
T ss_pred HHHHHHh----hhhHHHHHHHHHH
Confidence 6554443 3344444444433
No 46
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-17 Score=185.14 Aligned_cols=212 Identities=27% Similarity=0.361 Sum_probs=158.0
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008014 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (581)
Q Consensus 254 ~~~~~~~~~~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~V 333 (581)
-+|+.... +.......++.|+++..|.+++|+++.+.|.- .+++.. .++.|
T Consensus 390 LPWgk~S~--En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV--~kLrgs-------------------------~qGkI 440 (906)
T KOG2004|consen 390 LPWGKSST--ENLDLARAKEILDEDHYGMEDVKERILEFIAV--GKLRGS-------------------------VQGKI 440 (906)
T ss_pred CCCCCCCh--hhhhHHHHHHhhcccccchHHHHHHHHHHHHH--Hhhccc-------------------------CCCcE
Confidence 57865433 35567778899999999999999999999851 111000 12556
Q ss_pred E-EECCCCCChHHHHHHHHHHhCCCeEEeccccccc--------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 334 L-LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 334 L-L~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~--------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
| |+||||+|||++||.||+.++..|++++..-+.+ .-|+|.-+++.+..+-... ..+.+++||||
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~------t~NPliLiDEv 514 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK------TENPLILIDEV 514 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC------CCCceEEeehh
Confidence 6 9999999999999999999999999998876543 2488888777766553322 35679999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhccc
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDS 483 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~ 483 (581)
|++... ..+| -.++||++|| ||.+..+.+|.-.+.+|.+.++||||.|..+ +..++++|+
T Consensus 515 DKlG~g-----~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRM--- 575 (906)
T KOG2004|consen 515 DKLGSG-----HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRM--- 575 (906)
T ss_pred hhhCCC-----CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccccCChhhhhhh---
Confidence 999732 1122 5789999999 9999999999999999999999999999877 444554443
Q ss_pred CCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhh
Q 008014 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFV 528 (581)
Q Consensus 484 ~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl 528 (581)
|.+...++..+....--.+.+.+..+.++|+.|+.+
T Consensus 576 ---------EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v 611 (906)
T KOG2004|consen 576 ---------EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV 611 (906)
T ss_pred ---------heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc
Confidence 122234555555566566777778888888888776
No 47
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-17 Score=173.99 Aligned_cols=237 Identities=18% Similarity=0.286 Sum_probs=164.9
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCCh
Q 008014 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (581)
Q Consensus 264 ~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGK 343 (581)
....|.+|...+++ |.|.+.+|..+.+.|..+.++. +.+....+..++.+|||+|||||||
T Consensus 80 ~~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~p------------------elF~~g~Ll~p~kGiLL~GPpG~GK 140 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRRP------------------ELFAKGKLLRPPKGILLYGPPGTGK 140 (386)
T ss_pred cccchhhceeehhh-ccchHHHHHHHHHHHhhcccch------------------hhhcccccccCCccceecCCCCchH
Confidence 34566667677776 7999999999999996433321 1111223334668999999999999
Q ss_pred HHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 344 TtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
|.+|+++|++.+..|+.+.++.++. .|.|+. ++.++.+|..+. +-+|+||||||+|.+...|. . +.++.-.
T Consensus 141 TmlAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~--s-~dHEa~a 211 (386)
T KOG0737|consen 141 TMLAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRR--S-TDHEATA 211 (386)
T ss_pred HHHHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhcc--c-chHHHHH
Confidence 9999999999999999999999994 899998 888888988775 46899999999999998872 1 2222222
Q ss_pred hHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
.+.+++..+-||-... +...+++++|||++. +|+++.+| +.+.+..+.|+.++
T Consensus 212 ~mK~eFM~~WDGl~s~-----------------~~~rVlVlgATNRP~DlDeAiiRR-~p~rf~V~lP~~~q-------- 265 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSK-----------------DSERVLVLGATNRPFDLDEAIIRR-LPRRFHVGLPDAEQ-------- 265 (386)
T ss_pred HHHHHHHHHhccccCC-----------------CCceEEEEeCCCCCccHHHHHHHh-CcceeeeCCCchhh--------
Confidence 3678888888863221 122478888898887 88888765 45566666776554
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHH
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k 562 (581)
..++++.+.+.+=++..+.=.-+.+ .-+.||-.||.+.........++++.+
T Consensus 266 ---R~kILkviLk~e~~e~~vD~~~iA~-----~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 266 ---RRKILKVILKKEKLEDDVDLDEIAQ-----MTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred ---HHHHHHHHhcccccCcccCHHHHHH-----hcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 4555555543221111111111222 235699999999988777777666654
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=2.2e-17 Score=191.43 Aligned_cols=218 Identities=21% Similarity=0.270 Sum_probs=151.7
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008014 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (581)
Q Consensus 254 ~~~~~~~~~~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~V 333 (581)
-+|... ..+...+..+++.|+++++||+.+|+.+.+.+..+..+ .. ....++
T Consensus 299 ip~~~~--~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~------~~--------------------~~~~~l 350 (775)
T TIGR00763 299 LPWGKY--SKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR------GK--------------------MKGPIL 350 (775)
T ss_pred CCCccc--ccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh------cC--------------------CCCceE
Confidence 367542 22355688899999999999999999999877522110 00 112468
Q ss_pred EEECCCCCChHHHHHHHHHHhCCCeEEeccccccc--------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 334 LL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~--------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
+|+||||||||++|+++|+.++.+++.++++.+.. ..|+|.. .+.+.+.+..+. ..+.||||||||
T Consensus 351 ll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~-~g~i~~~l~~~~-----~~~~villDEid 424 (775)
T TIGR00763 351 CLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAM-PGRIIQGLKKAK-----TKNPLFLLDEID 424 (775)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCC-CchHHHHHHHhC-----cCCCEEEEechh
Confidence 89999999999999999999999999998765421 3577765 334444444332 244699999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCC
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~I 485 (581)
++.+... ++ ..++||++||. +....+.++.....++.++++||+|+|..+
T Consensus 425 k~~~~~~-----~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-------------- 474 (775)
T TIGR00763 425 KIGSSFR-----GD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID-------------- 474 (775)
T ss_pred hcCCccC-----CC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch--------------
Confidence 9985311 11 57899999992 223334444444567889999999998421
Q ss_pred CCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHH
Q 008014 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (581)
Q Consensus 486 gF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~ 565 (581)
.+.|++++|+. ++.|..++.++..+|++..+ ..+. ++
T Consensus 475 ------------------------------------~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l---~~~~---~~ 511 (775)
T TIGR00763 475 ------------------------------------TIPRPLLDRME-VIELSGYTEEEKLEIAKKYL---IPKA---LE 511 (775)
T ss_pred ------------------------------------hCCHHHhCCee-EEecCCCCHHHHHHHHHHHH---HHHH---HH
Confidence 26789999995 68999999999999998433 2333 33
Q ss_pred hCCC---eEEeccccc
Q 008014 566 MNGQ---AAFYGKCFE 578 (581)
Q Consensus 566 ~~gi---~l~~~~~~~ 578 (581)
.+|+ ++.+++++.
T Consensus 512 ~~~l~~~~~~~~~~~l 527 (775)
T TIGR00763 512 DHGLKPDELKITDEAL 527 (775)
T ss_pred HcCCCcceEEECHHHH
Confidence 4454 678887654
No 49
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.74 E-value=9e-18 Score=185.40 Aligned_cols=173 Identities=28% Similarity=0.384 Sum_probs=128.3
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++.+++.+.+.|...+. .++.....+ +++++||+||||||||++|+++|+.++
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---------------------~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLK---------------------PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---------------------CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 388999999999999864332 222222211 237899999999999999999999986
Q ss_pred CC----------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhH
Q 008014 356 VP----------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (581)
Q Consensus 356 ~~----------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~v 425 (581)
.+ |+.+..+++. ..|+|+. ++.++.+|..+........++||||||+|++...|... .+.+. ...+
T Consensus 242 ~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~-e~~i 317 (512)
T TIGR03689 242 QRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV-ETTV 317 (512)
T ss_pred cccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-HHHH
Confidence 54 5566666666 4689987 77888888877654444578999999999999876432 12222 3447
Q ss_pred HHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 426 q~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.++||..|||. ....++++|++||..+ +|.++. .+||+..|.|+.|+.+.
T Consensus 318 l~~LL~~LDgl-------------------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 318 VPQLLSELDGV-------------------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred HHHHHHHhccc-------------------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 78999999952 1235688999999988 676665 47999999999999875
No 50
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=2.8e-17 Score=178.88 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=123.7
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++.+++.+.+++..... .++...... ++.++||+||||||||++|+++|+.++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~---------------------~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIK---------------------PPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC---------------------CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 479999999999999963221 122222111 236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.+.++++. ..|+|+. ...++.+|..+.. ..++||||||||++...|.....+.+....++...||..|+|
T Consensus 243 ~~fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 243 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred CCEEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 999999999887 4688887 6778888876653 578999999999998876543333322212233445555553
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. ....++.+|+++|..+ ++.++. .+|++..|.|+.|+.+.
T Consensus 317 ~-------------------~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 317 F-------------------DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred h-------------------cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 1 1133577888888777 666654 57999999999998765
No 51
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.72 E-value=1e-16 Score=185.55 Aligned_cols=221 Identities=17% Similarity=0.244 Sum_probs=159.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc
Q 008014 253 DGCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN 332 (581)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~ 332 (581)
+-+|+.. ..+...+.+.++.|++++.|++++|+++.+.+..+... .. .....
T Consensus 300 ~~pw~~~--~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~------~~--------------------~~g~~ 351 (784)
T PRK10787 300 QVPWNAR--SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV------NK--------------------IKGPI 351 (784)
T ss_pred hCCCCCC--CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc------cc--------------------CCCce
Confidence 3578553 34566889999999999999999999998877521110 00 01245
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc--------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~--------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
++|+||||||||++++.+|+.++.++++++++.... ..|+|...+. +...+..+. ..+.|++||||
T Consensus 352 i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~-~~~~l~~~~-----~~~~villDEi 425 (784)
T PRK10787 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK-LIQKMAKVG-----VKNPLFLLDEI 425 (784)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcH-HHHHHHhcC-----CCCCEEEEECh
Confidence 789999999999999999999999999998876432 2355554333 333333221 24569999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccC
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~ 484 (581)
|++..... . ..+++|+++|| |+....+.++...+.++.++++||||+|+.
T Consensus 426 dk~~~~~~-----g-----~~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------- 475 (784)
T PRK10787 426 DKMSSDMR-----G-----DPASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------- 475 (784)
T ss_pred hhcccccC-----C-----CHHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCC--------------
Confidence 99986511 1 16899999999 344445667776778899999999998731
Q ss_pred CCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHH
Q 008014 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMF 564 (581)
Q Consensus 485 IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~ 564 (581)
.+.|.|++|+. ++.+.+|+++++.+|++..+ ..+..+..
T Consensus 476 -------------------------------------~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L---~~k~~~~~ 514 (784)
T PRK10787 476 -------------------------------------NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHL---LPKQIERN 514 (784)
T ss_pred -------------------------------------CCCHHHhccee-eeecCCCCHHHHHHHHHHhh---hHHHHHHh
Confidence 26789999995 78999999999999999544 32222333
Q ss_pred HhCCCeEEeccccc
Q 008014 565 QMNGQAAFYGKCFE 578 (581)
Q Consensus 565 ~~~gi~l~~~~~~~ 578 (581)
...+.++.+++++.
T Consensus 515 ~l~~~~l~i~~~ai 528 (784)
T PRK10787 515 ALKKGELTVDDSAI 528 (784)
T ss_pred CCCCCeEEECHHHH
Confidence 45667899998875
No 52
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.5e-17 Score=178.72 Aligned_cols=219 Identities=22% Similarity=0.320 Sum_probs=160.0
Q ss_pred ccccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 277 KFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+++.|++.+|+.+.+++..... .++++.+.+ .+++||.||||+|||+|+++||.++
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p----------------------~rglLLfGPpgtGKtmL~~aiAsE~ 210 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP----------------------VRGLLLFGPPGTGKTMLAKAIATES 210 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccccc----------------------cchhheecCCCCchHHHHHHHHhhh
Confidence 3689999999999999974332 233333322 3789999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+..|+.++++.++ ..|+|+. ++.++.+|..|+. .+|+|+||||||++..+|.+ ..+...++++..+|-.++
T Consensus 211 ~atff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~ 281 (428)
T KOG0740|consen 211 GATFFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFD 281 (428)
T ss_pred cceEeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhc
Confidence 9999999999999 6899998 8999999998874 68999999999999999832 445556668888888887
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
+... ..-.++++|+|||.++ +|+++++ ||...+.++.|+.+.. .....+++...
T Consensus 282 ~~~s-----------------~~~drvlvigaTN~P~e~Dea~~R-rf~kr~yiplPd~etr-------~~~~~~ll~~~ 336 (428)
T KOG0740|consen 282 GKNS-----------------APDDRVLVIGATNRPWELDEAARR-RFVKRLYIPLPDYETR-------SLLWKQLLKEQ 336 (428)
T ss_pred cccC-----------------CCCCeEEEEecCCCchHHHHHHHH-HhhceeeecCCCHHHH-------HHHHHHHHHhC
Confidence 5321 1223789999999999 8888876 8999999999998752 22233333322
Q ss_pred cchhhhhcCCChhhhcccCeEE-EcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLV-SLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV-~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.. .+...-+. .++ ..+.++-.++..++++......+..
T Consensus 337 -~~-----~l~~~d~~---~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 337 -PN-----GLSDLDIS---LLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred -CC-----CccHHHHH---HHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 11 12211111 111 1245788888888887766655443
No 53
>CHL00176 ftsH cell division protein; Validated
Probab=99.72 E-value=5.9e-17 Score=183.60 Aligned_cols=170 Identities=25% Similarity=0.368 Sum_probs=126.1
Q ss_pred cccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|+|.+++|+++.+.+.. ++. .+.... . ..+.++||+||||||||++|+++|.+++
T Consensus 184 dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g--------------------~-~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSF-LKKPERFTAVG--------------------A-KIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred hccChHHHHHHHHHHHHH-HhCHHHHhhcc--------------------C-CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999988741 111 111111 1 1236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.||+.++++++.. .++|.. ...++.+|..+.. ..|+||||||||.+...|.....+.+...+.+.+.||..|||
T Consensus 242 ~p~i~is~s~f~~-~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 242 VPFFSISGSEFVE-MFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred CCeeeccHHHHHH-Hhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 9999999998773 467765 5677888877653 578999999999999877554334444445577888888884
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. ....++++|+++|..+ ++.++. .+||++.|.++.|+.+.
T Consensus 316 ~-------------------~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 316 F-------------------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred c-------------------cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 2 1234578889998876 566554 57999999999998775
No 54
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.69 E-value=4.1e-16 Score=177.53 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=134.7
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtL 346 (581)
.+..+...+++ |.|.+.+++++.+.+.. ++.. .... .....+ +++++|+||||||||++
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~~-~~~~-----------------~~~~~~-~~gill~G~~G~GKt~~ 201 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEY-LREP-SRFQ-----------------KLGGKI-PKGVLMVGPPGTGKTLL 201 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHH-hhCH-HHHH-----------------hcCCCC-CCcEEEECCCCCCHHHH
Confidence 33455556665 79999999999988852 1110 0000 001112 25799999999999999
Q ss_pred HHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 347 AKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 347 AraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
|+++++.++.+|+.++++++.. .|+|.. ...++.+|..+. ...|+||||||||.+...|.....+.+...+++.
T Consensus 202 ~~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 202 AKAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred HHHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 9999999999999999998873 577776 667788887654 3578999999999999887654444455556688
Q ss_pred HHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhh
Q 008014 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (581)
Q Consensus 427 ~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~ 494 (581)
+.||..|||. .....+++|+++|.++ ++.++.+ +||++.|.++.|+.+.
T Consensus 276 n~lL~~mdg~-------------------~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 276 NQMLVEMDGF-------------------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred HHHHHhhhcc-------------------cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 9999999952 1234588899999888 6666654 7999999999999764
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.69 E-value=3.4e-16 Score=166.54 Aligned_cols=171 Identities=26% Similarity=0.385 Sum_probs=118.6
Q ss_pred cccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+++++.+.+.+.....+ .+... .+. ++.++||+||||||||++|+++|+.++
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~--------------------g~~-~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEV--------------------GIE-PPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhc--------------------CCC-CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 5899999999999998633221 11111 111 236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.+.++++. ..|+|+. ...++.+|..+.. ..++||||||+|.+...+.....+.+. .++..|.+++..
T Consensus 182 ~~~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~---~~~~~l~~ll~~ 252 (364)
T TIGR01242 182 ATFIRVVGSELV-RKYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAE 252 (364)
T ss_pred CCEEecchHHHH-HHhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccH---HHHHHHHHHHHH
Confidence 999999888776 3577776 5667777765542 468899999999998775543333222 245555555441
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.. + .-...++.+|+++|..+ ++.++. .++|+..|.|+.|+.+.
T Consensus 253 ld------~----------~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 253 LD------G----------FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred hh------C----------CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 00 0 01134678888888776 555554 46899999999998765
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=5.9e-16 Score=157.75 Aligned_cols=170 Identities=26% Similarity=0.448 Sum_probs=124.3
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|++ .+||+++|+.|...+...-. + .+++ .|+||+||||.||||||..+|++
T Consensus 24 ~l~e-fiGQ~~vk~~L~ifI~AAk~--------r----------~e~l---------DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDE-FIGQEKVKEQLQIFIKAAKK--------R----------GEAL---------DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHH-hcChHHHHHHHHHHHHHHHh--------c----------CCCc---------CeEEeeCCCCCcHHHHHHHHHHH
Confidence 3445 49999999999988852111 1 1112 69999999999999999999999
Q ss_pred hCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 354 l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
++..+...++..+..++ +....+..+ ..+.|||||||+++++. +-..|...|
T Consensus 76 mgvn~k~tsGp~leK~g----DlaaiLt~L----------e~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKPG----DLAAILTNL----------EEGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccChh----hHHHHHhcC----------CcCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 99999888777665432 223333322 35679999999999988 888999999
Q ss_pred hCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 434 Eg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
|++.+.|- -......+.+.++...+-+|.||...+
T Consensus 128 EDf~lDI~---IG~gp~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 128 EDFRLDII---IGKGPAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred hheeEEEE---EccCCccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 99877651 111223345677777888888776433
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~ 552 (581)
.+...+..||..+..++-|+.+|+.+|+...
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHH
Confidence 1456788888888899999999998888844
No 57
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.2e-16 Score=161.03 Aligned_cols=173 Identities=22% Similarity=0.299 Sum_probs=132.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|-|.-..++++.+.|..|... ++....+.+.+ |..++|+||||+|||.+|+++|..++..
T Consensus 133 ~~ggl~~qirelre~ielpl~n------------------p~lf~rvgIk~-Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTN------------------PELFLRVGIKP-PKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred HhCChHHHHHHHHhheEeeccC------------------chhccccCCCC-CceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 4788889999999888755432 11222223333 3689999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.+.++++. .+|.|++ ++.+++.|..++. ..+||||+||||++...+.+.+.++| +.+|.+|.+++++..
T Consensus 194 fl~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~Ts~d---reiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 194 FLKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEGTSSD---REIQRTLMELLNQMD 264 (388)
T ss_pred eEEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccccchh---HHHHHHHHHHHHhhc
Confidence 9999999998 6899998 8999999988875 56899999999999988755443333 348888877777310
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~~IgF~~P~~e~ 494 (581)
| + -....+.+|||||.++ ++. +++.||.++.+..+.|.+..
T Consensus 265 ------g--f--------d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 265 ------G--F--------DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred ------c--c--------hhcccccEEEecCCccccchhhcCCccccceeccCCcchhh
Confidence 0 0 1134577899999998 555 56788999999999998763
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=2.9e-15 Score=158.69 Aligned_cols=83 Identities=30% Similarity=0.450 Sum_probs=70.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.+++|||||||||||+|++||+..+..|..+++..-. .+-+++.++.++.........|||||||+++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6889999999999999999999999999999885422 3557788888765544466789999999999988
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
.|+.||..||.+
T Consensus 120 --------------QQD~lLp~vE~G 131 (436)
T COG2256 120 --------------QQDALLPHVENG 131 (436)
T ss_pred --------------hhhhhhhhhcCC
Confidence 899999999944
No 59
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.61 E-value=2.4e-15 Score=181.08 Aligned_cols=135 Identities=17% Similarity=0.273 Sum_probs=102.2
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHhCCCeEEecccccccccc-------------------------------------
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGY------------------------------------- 371 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gy------------------------------------- 371 (581)
++++|||+||||||||+|||++|..+++||+.++++++.+. |
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhcch
Confidence 45799999999999999999999999999999999997732 2
Q ss_pred ----ccchh-hhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcc
Q 008014 372 ----VGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGAR 446 (581)
Q Consensus 372 ----vGe~~-~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~ 446 (581)
++++. ...++.+|+.|+ +.+||||||||||++.... ..+...+.|+..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc--------
Confidence 11121 123667777765 3689999999999998651 122247889999995210
Q ss_pred cCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhh
Q 008014 447 KHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRA 493 (581)
Q Consensus 447 ~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e 493 (581)
...+.+++||+|||.++ +|.++. .||||+.|.++.|+..
T Consensus 1767 --------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p 1807 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIP 1807 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCch
Confidence 01356789999999999 666554 4799999999988764
No 60
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-15 Score=162.52 Aligned_cols=157 Identities=20% Similarity=0.388 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|||++.|++.+.+.|. .++-.+..|||.|++||||..+||+|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~------------------------------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE------------------------------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH------------------------------HHhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 48999999999988885 112234799999999999999999999877
Q ss_pred CCCeEEecccccc----ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~----~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.|||.+||+.+. ++...|+. .+.++.........+..+++|.||+|||..|+.. +|..||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 6899999999864 35677776 6667777777777788899999999999999998 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCCh
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P 490 (581)
++|.++.+. +-+..+.+.+| +++|+||| .|+++++++|+|...++|...
T Consensus 339 RvLQegEie-------RvG~~r~ikVD---VRiIAATN-RDL~~~V~~G~FRaDLYyRLs 387 (550)
T COG3604 339 RVLQEGEIE-------RVGGDRTIKVD---VRVIAATN-RDLEEMVRDGEFRADLYYRLS 387 (550)
T ss_pred HHHhhccee-------ecCCCceeEEE---EEEEeccc-hhHHHHHHcCcchhhhhhccc
Confidence 999966553 22333344554 89999999 589999999999888777643
No 61
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.60 E-value=2.6e-15 Score=134.20 Aligned_cols=129 Identities=29% Similarity=0.520 Sum_probs=96.1
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhc-cCeEEehhhhhhhhhh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKA 411 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~-~~ILfIDEID~l~~~r 411 (581)
|||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. ...+...+..+.. .. ++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~----~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKK----SAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHH----TSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-ccccccccccccc----cccceeeeeccchhccccc
Confidence 68999999999999999999999999999999987 3466665 6777777776542 33 7999999999999885
Q ss_pred hhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCC
Q 008014 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFG 488 (581)
Q Consensus 412 ~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~ 488 (581)
+.......+.+++.|+..|+... -...++++|+++|..+ +++.+.++||+..+.++
T Consensus 75 ---~~~~~~~~~~~~~~L~~~l~~~~------------------~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ---QPSSSSFEQRLLNQLLSLLDNPS------------------SKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp ---STSSSHHHHHHHHHHHHHHHTTT------------------TTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred ---ccccccccccccceeeecccccc------------------cccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 11233333458899999999310 0134688899988866 55544437888777664
No 62
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.58 E-value=2.3e-14 Score=165.61 Aligned_cols=167 Identities=25% Similarity=0.386 Sum_probs=123.8
Q ss_pred ccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 279 VIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
|+|++++++.|.+.+.... +..+..... .++.++||+||||||||++|+++|+.++.
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi---------------------~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGI---------------------EPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---------------------CCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 7999999999999986322 122221111 12368999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
+++.++++++. ..|.|+. +..++.+|+.+.. ..++||||||||.+...++... .....++++.|+.+|++.
T Consensus 239 ~~i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 239 YFISINGPEIM-SKYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred eEEEEecHHHh-cccccHH-HHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhcc
Confidence 99999999877 4688876 6778888876642 5689999999999998754321 222345899999999842
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.....+++|+++|..+ ++.++. .+||+..+.++.|+.+.
T Consensus 310 -------------------~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 310 -------------------KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred -------------------ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 1123467787888766 666554 36899999999997664
No 63
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-15 Score=161.99 Aligned_cols=141 Identities=28% Similarity=0.423 Sum_probs=116.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-CeEEeccccccccccccchhhhHHHHHhhhhhhhHHh----hccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA----AQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~----a~~~ILfIDEID 405 (581)
+++||+||||||||++||.|.+.++. +--.+++.++. .+|||++ +..++++|..|+..... ..-.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 68999999999999999999999964 34558898888 5799999 89999999988764422 234699999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHHhhhccc
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDS 483 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~~rrfd~ 483 (581)
+++..|++..++..+.+. +.++||.-|||. -...|+++|.-||+.| +|+ +++.+|+.-
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDGV-------------------eqLNNILVIGMTNR~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDGV-------------------EQLNNILVIGMTNRKDLIDEALLRPGRLEV 394 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhcccH-------------------HhhhcEEEEeccCchhhHHHHhcCCCceEE
Confidence 999999987776666655 999999999962 2356899999999999 555 456789999
Q ss_pred CCCCCChhhh
Q 008014 484 SIGFGAPVRA 493 (581)
Q Consensus 484 ~IgF~~P~~e 493 (581)
.++...|+++
T Consensus 395 qmEIsLPDE~ 404 (744)
T KOG0741|consen 395 QMEISLPDEK 404 (744)
T ss_pred EEEEeCCCcc
Confidence 9999999987
No 64
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=152.47 Aligned_cols=176 Identities=27% Similarity=0.336 Sum_probs=121.4
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtL 346 (581)
....+...+.+.++|+++++..+..++. ..+|+||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 4555777888889999999998877773 238999999999999999
Q ss_pred HHHHHHHhCCCeEEecccc-ccccccccchhhhHH---HHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 347 AKTLARYVNVPFVIADATT-LTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 347 AraLA~~l~~~fv~i~~s~-l~~~gyvGe~~~~~l---~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
|+.+|+.++.+|++++|+. +...+.+|....... ...+.-.+..+..+..+|+|+|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 9999999999999999995 555556665422211 111111111111111259999999999988
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh-cccCCCCCChhhh
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR-QDSSIGFGAPVRA 493 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr-fd~~IgF~~P~~e 493 (581)
+|++||++|+++.+++++... ...+..++++.|+|-.-...+ ..+.+++.+|. +...++|+.+..+
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~--~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLTT-IRLPPPFIVIATQNPGEYEGT--YPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEccCccccCCC--cCCCHHHHhhEEEEEecCCCCchHH
Confidence 999999999999999866553 334444555655553333322 12445555554 8888998855544
No 65
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8e-15 Score=170.19 Aligned_cols=168 Identities=24% Similarity=0.356 Sum_probs=130.8
Q ss_pred cccChHHHHHHHHHHHHhh--HHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-
Q 008014 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l- 354 (581)
.|.|.+.++..|++.|... |+..+..... -++++|||+||||||||++|+++|..+
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---------------------tpPrgvL~~GppGTGkTl~araLa~~~s 324 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYPEFFDNFNI---------------------TPPRGVLFHGPPGTGKTLMARALAAACS 324 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhhhHhhhccc---------------------CCCcceeecCCCCCchhHHHHhhhhhhc
Confidence 4899999999999999643 3333332221 134789999999999999999999888
Q ss_pred ----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 ----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
...|+.-++++.. +.|+|+. ++.++-+|+.++. .+|.|+|+||||-+++.|++.+ +..+..+.++||
T Consensus 325 ~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLL 395 (1080)
T KOG0732|consen 325 RGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLL 395 (1080)
T ss_pred ccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccchH---HHhhhhHHHHHH
Confidence 3457777777777 6799998 9999999998864 6899999999999999986543 333445999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.+|+|- -....+++|.|||+++ ++.+++ .++|++.+.|+.|+.+.
T Consensus 396 aLmdGl-------------------dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 396 ALMDGL-------------------DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred HhccCC-------------------CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 999962 1234577888999888 665553 56999999999997663
No 66
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.1e-14 Score=159.24 Aligned_cols=168 Identities=24% Similarity=0.364 Sum_probs=131.5
Q ss_pred ccccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 277 KFVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+.|.......+.+.++... +..+.....+ ++.++|++||||||||.+++++|++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~---------------------~prg~Ll~gppg~Gkt~l~~aVa~e~ 242 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIK---------------------PPRGLLLYGPPGTGKTFLVRAVANEY 242 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCC---------------------CCCCccccCCCCCChHHHHHHHHHHh
Confidence 357889999999988886322 2222222211 34799999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhc-cCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~-~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
+..++.+++.++. .+|.|++ ++.+++.|+.+.. .+ |.++||||+|.+.++|..... + ..++..+|+.+|
T Consensus 243 ~a~~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k----~~~psii~IdEld~l~p~r~~~~~---~-e~Rv~sqlltL~ 312 (693)
T KOG0730|consen 243 GAFLFLINGPELI-SKFPGET-ESNLRKAFAEALK----FQVPSIIFIDELDALCPKREGADD---V-ESRVVSQLLTLL 312 (693)
T ss_pred CceeEecccHHHH-Hhcccch-HHHHHHHHHHHhc----cCCCeeEeHHhHhhhCCcccccch---H-HHHHHHHHHHHH
Confidence 9999999999988 5688888 8999999998763 34 999999999999998764322 2 344999999999
Q ss_pred hCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhh
Q 008014 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 434 Eg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
||. -...++++|+++|.++ ++..++|+||++.+..+.|+...
T Consensus 313 dg~-------------------~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 313 DGL-------------------KPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred hhC-------------------cCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchh
Confidence 952 1245677788888887 88888878999999999998653
No 67
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.7e-14 Score=146.61 Aligned_cols=141 Identities=26% Similarity=0.376 Sum_probs=104.2
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCe--
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGI-- 398 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~I-- 398 (581)
.+-+||+||||||||+|+|++|+.+ ...++++++..+- ++|.+++ ++.+.++|+.-...+. ..++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~-d~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVE-DRGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHh-CCCcEEE
Confidence 3667899999999999999999887 2467899999877 6799998 8999999988765433 34444
Q ss_pred EEehhhhhhhhhhhhcccCCCCch-hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH
Q 008014 399 VYIDEVDKITKKAESLNISRDVSG-EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI 476 (581)
Q Consensus 399 LfIDEID~l~~~r~~~~~~~d~~~-~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l 476 (581)
|+|||+++++..|.+...+.+.++ .++.++||..||. .-...|+++.||+|..+ +|.+.
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~siD~Af 314 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTDSIDVAF 314 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHHHHHHHh
Confidence 557999999999977665555443 4799999999992 22356788889888766 66666
Q ss_pred HhhhcccCCCCCChhhh
Q 008014 477 SERRQDSSIGFGAPVRA 493 (581)
Q Consensus 477 ~~rrfd~~IgF~~P~~e 493 (581)
.+|. |.+...+.|..+
T Consensus 315 VDRA-Di~~yVG~Pt~~ 330 (423)
T KOG0744|consen 315 VDRA-DIVFYVGPPTAE 330 (423)
T ss_pred hhHh-hheeecCCccHH
Confidence 5443 334444455443
No 68
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.53 E-value=4.5e-14 Score=135.61 Aligned_cols=145 Identities=23% Similarity=0.360 Sum_probs=98.0
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---C
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~ 355 (581)
+||.+.+++.+.+.+.. +...+.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~~------------------------------~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR------------------------------AASSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHHH------------------------------HTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHHH------------------------------HhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 58889999988887741 01123789999999999999999999866 5
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhh-----------hhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~-----------a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
.||+.++|+.+.+ +..-.++|.. ....+..+.+++||||||+.|++.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 7999999988753 1112233322 123567788999999999999998
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCC
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~Ig 486 (581)
+|..|+++|+.+.+... +... ....++++|++++ .++++++.+++|...+.
T Consensus 109 ~Q~~Ll~~l~~~~~~~~-------g~~~---~~~~~~RiI~st~-~~l~~~v~~g~fr~dLy 159 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTRL-------GSDK---PVPVDVRIIASTS-KDLEELVEQGRFREDLY 159 (168)
T ss_dssp HHHHHHHHHHHSEEECC-------TSSS---EEE--EEEEEEES-S-HHHHHHTTSS-HHHH
T ss_pred HHHHHHHHHhhchhccc-------cccc---cccccceEEeecC-cCHHHHHHcCCChHHHH
Confidence 99999999996554321 1111 1234689999887 57999999888755443
No 69
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-14 Score=156.04 Aligned_cols=158 Identities=21% Similarity=0.340 Sum_probs=119.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+|.+.++.++.+.+. ++ +..+..||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r~--------------------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----RI--------------------------AKTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----hh--------------------------cCCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 48999999998887773 11 1123789999999999999999998776
Q ss_pred CCCeEEecccccc----ccccccchhhhHHHHHhhh-hhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 355 NVPFVIADATTLT----QAGYVGEDVESILYKLLTV-SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 355 ~~~fv~i~~s~l~----~~gyvGe~~~~~l~~lf~~-a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
+.||+.+||+.+- ++.+.|+. .+.++..-.. ....+..+++|.||||||..|+.. +|..|
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKL 360 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKL 360 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHH
Confidence 6899999999854 34555554 3444443332 234566688999999999999988 99999
Q ss_pred HHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChh
Q 008014 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (581)
Q Consensus 430 L~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~ 491 (581)
|++|+++.+.- -+....+.+ ++++|+||| .++++++..++|...++|...+
T Consensus 361 LRVLQEkei~r-------vG~t~~~~v---DVRIIAATN-~nL~~~i~~G~FReDLYYRLNV 411 (560)
T COG3829 361 LRVLQEKEIER-------VGGTKPIPV---DVRIIAATN-RNLEKMIAEGTFREDLYYRLNV 411 (560)
T ss_pred HHHHhhceEEe-------cCCCCceee---EEEEEeccC-cCHHHHHhcCcchhhheeeece
Confidence 99999765531 222223334 489999999 5799999999999999887544
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.52 E-value=6.1e-14 Score=162.00 Aligned_cols=185 Identities=21% Similarity=0.267 Sum_probs=127.5
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|+ .|+|+++.++.+.+.+.. ..+.++||+||||||||++|+.+|+.
T Consensus 180 ~l~-~~igr~~ei~~~~~~L~~--------------------------------~~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 180 KID-PLIGREDELERTIQVLCR--------------------------------RKKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCC-cccCcHHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 444 489999999987766631 01368999999999999999999988
Q ss_pred h----------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
+ +..++.++++.+.. ..|.|+. +..++++++.+.. ..+.||||||||.+...+...+ .+
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~-----~~ 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSG-----GS 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCC-----cc
Confidence 7 66788888887653 4688876 7888888876542 3578999999999987532111 11
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
..+++.|+..|+. ..+.+|++|+..+
T Consensus 297 ~~~~~~L~~~l~~-----------------------g~i~~IgaTt~~e------------------------------- 322 (731)
T TIGR02639 297 MDASNLLKPALSS-----------------------GKLRCIGSTTYEE------------------------------- 322 (731)
T ss_pred HHHHHHHHHHHhC-----------------------CCeEEEEecCHHH-------------------------------
Confidence 1267778887772 2356677777321
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
+.+.+. ..+.+.+||. .+.+..++.++..+|++ .+..+|++ .+.+.+++++..
T Consensus 323 ------~~~~~~--------~d~al~rRf~-~i~v~~p~~~~~~~il~----~~~~~~e~-----~~~v~i~~~al~ 375 (731)
T TIGR02639 323 ------YKNHFE--------KDRALSRRFQ-KIDVGEPSIEETVKILK----GLKEKYEE-----FHHVKYSDEALE 375 (731)
T ss_pred ------HHHHhh--------hhHHHHHhCc-eEEeCCCCHHHHHHHHH----HHHHHHHh-----ccCcccCHHHHH
Confidence 111111 3477888886 58888889999888888 44444432 334566666543
No 71
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.51 E-value=3e-14 Score=155.21 Aligned_cols=161 Identities=19% Similarity=0.356 Sum_probs=121.8
Q ss_pred hccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-
Q 008014 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 276 d~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l- 354 (581)
...++|++.++++|...+. + ++..+.+||+.|++||||.++||+|.+..
T Consensus 140 ~~~liG~S~am~~l~~~i~----k--------------------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIA----K--------------------------VAPSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHH----H--------------------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 4468999999999988885 1 11234799999999999999999998777
Q ss_pred --CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHH
Q 008014 355 --NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (581)
Q Consensus 355 --~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~a 428 (581)
+.||+.+||..+.+ +.+.|+. .+.++.........+..+++|+||||||..|+.. +|..
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~k 254 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVK 254 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHHH
Confidence 57999999998653 3455554 3444444444445667789999999999999988 9999
Q ss_pred HHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhh
Q 008014 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (581)
Q Consensus 429 LL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~ 492 (581)
||++|+.+.+.- -+....+.+ ++++|++|+ .++++.+.+++|...++|...+-
T Consensus 255 LLRvLqe~~~~r-------vG~~~~i~v---dvRiIaaT~-~dL~~~v~~G~FReDLyyRLnV~ 307 (464)
T COG2204 255 LLRVLQEREFER-------VGGNKPIKV---DVRIIAATN-RDLEEEVAAGRFREDLYYRLNVV 307 (464)
T ss_pred HHHHHHcCeeEe-------cCCCcccce---eeEEEeecC-cCHHHHHHcCCcHHHHHhhhccc
Confidence 999999765542 122222333 589999998 68999999999988888865543
No 72
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=5.9e-13 Score=137.48 Aligned_cols=105 Identities=29% Similarity=0.450 Sum_probs=73.4
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCCe
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~f 358 (581)
++||+++++.|...+...-. . . -...+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~-----~--~--------------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKM-----R--Q--------------------EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHh-----c--C--------------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 79999999998887741100 0 0 0126799999999999999999999998887
Q ss_pred EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCcee
Q 008014 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (581)
Q Consensus 359 v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v 438 (581)
..+.++..... ..+...+.. ...+.+||||||+.+.+. .+..|+.+|++..+
T Consensus 59 ~~~~~~~~~~~--------~~l~~~l~~------~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 59 KITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRL 110 (305)
T ss_pred EEeccchhcCc--------hhHHHHHHh------cccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhhe
Confidence 66655433211 112122211 135689999999999876 67889999986543
No 73
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.49 E-value=7.6e-13 Score=138.98 Aligned_cols=156 Identities=22% Similarity=0.325 Sum_probs=94.1
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCCe
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~f 358 (581)
++||++.++.+...+.....+ . .+..+++|+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~-------~--------------------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR-------G--------------------EALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 799999999998877421000 0 0236899999999999999999999999888
Q ss_pred EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCcee
Q 008014 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (581)
Q Consensus 359 v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v 438 (581)
..+++..+.. ...+...+... ..++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 7666654331 11222222221 35789999999999865 67778899986544
Q ss_pred eecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhh
Q 008014 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 439 ~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e 493 (581)
.+--... .....+.+....+.+|++++... +...+.+ ||...+.|..++.+
T Consensus 132 ~~~l~~~---~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-Rf~~~~~l~~~~~~ 183 (328)
T PRK00080 132 DIMIGKG---PAARSIRLDLPPFTLIGATTRAGLLTSPLRD-RFGIVQRLEFYTVE 183 (328)
T ss_pred eeeeccC---ccccceeecCCCceEEeecCCcccCCHHHHH-hcCeeeecCCCCHH
Confidence 3210000 00111222333456677766544 3333332 34444455544433
No 74
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.47 E-value=1.6e-13 Score=136.79 Aligned_cols=201 Identities=25% Similarity=0.352 Sum_probs=130.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-C-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-N- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-~- 355 (581)
+|||.++.+++|..... -+ .-+|++|.|||||||||.+.++|+++ |
T Consensus 28 dIVGNe~tv~rl~via~---------------~g-----------------nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK---------------EG-----------------NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHH---------------cC-----------------CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 48999999999987663 01 12699999999999999999999888 3
Q ss_pred ---CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHH
Q 008014 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (581)
Q Consensus 356 ---~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~l 432 (581)
.-++++++++-. |-++-+.-.+.|.+.+..+......||++||+|++... .|++|.+.
T Consensus 76 ~~ke~vLELNASdeR-----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASDER-----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCcccc-----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 235677776644 44555555677777665555577889999999999877 89999999
Q ss_pred HhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhh
Q 008014 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (581)
Q Consensus 433 LEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~ 512 (581)
|| +-..++++.++|.... .+-+.++.| ++.+++.++++++++..+++.
T Consensus 137 ME-------------------iyS~ttRFalaCN~s~-KIiEPIQSR------------CAiLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 137 ME-------------------IYSNTTRFALACNQSE-KIIEPIQSR------------CAILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred HH-------------------HHcccchhhhhhcchh-hhhhhHHhh------------hHhhhhcccCHHHHHHHHHHH
Confidence 99 1123444444443332 244444443 456677788889998888887
Q ss_pred hcchhhh------------hcCCChhhhcccCeEE-EcCCCCHHHHHHHHhhhHHHHHHHHH
Q 008014 513 VESSDLI------------AYGLIPEFVGRFPVLV-SLLALTENQLVQVLTEPKNALGKQYR 561 (581)
Q Consensus 513 v~~~dl~------------~~gl~PEfl~Rf~~iV-~l~~LsedeL~~Il~e~l~~l~~q~~ 561 (581)
++.+.+. ..|-...-++.++..+ .+...+.|.+.++++++...++++..
T Consensus 185 ~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 185 AKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred HHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 7754331 1111122233333333 34445556666666555554444433
No 75
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.45 E-value=1.3e-14 Score=133.36 Aligned_cols=107 Identities=28% Similarity=0.308 Sum_probs=65.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccc-cccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s-~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
||||+|+||+|||++|+++|+.++..|.+|+++ ++..++..|..+...-...|.-.+. ..-..|+++|||+++.++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G---Pif~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG---PIFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE----TT-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecC---hhhhceeeecccccCCHH
Confidence 789999999999999999999999999999997 5666666665432111111211111 123579999999999998
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeec
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQID 457 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~ 457 (581)
+|++||++|+++.|++ .|..+.....+.+++
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViA 108 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DGQTYPLPDPFFVIA 108 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TTEEEE--SS-EEEE
T ss_pred --------------HHHHHHHHHHcCeEEe--CCEEEECCCcEEEEE
Confidence 9999999999999987 344343333333333
No 76
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.45 E-value=2.6e-13 Score=142.51 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=82.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc-cccccccchhhhHHHH-----HhhhhhhhHHhhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL-TQAGYVGEDVESILYK-----LLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l-~~~gyvGe~~~~~l~~-----lf~~a~~~l~~a~~~ILfIDEI 404 (581)
++|||.||||||||++|+.+|+.++.++++++++.. ...+++|...- .+.. .|.......+...+++|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~-~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAI-VLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCcee-eccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 789999999999999999999999999999999874 33457776421 0100 1111111112346778999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh-CceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE-g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
|++.++ +++.|+.+|| ++.+++++.+.....+. ++++|+|.|.
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp--------~FrviAT~Np 187 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIRAHP--------AFRLFATANT 187 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEecCCC--------CeEEEEeeCC
Confidence 999888 9999999999 67888877654443443 4555666554
No 77
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=1.3e-12 Score=133.55 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=91.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc-cccccccchh----hhHHHHH--------------hhhhhhhH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL-TQAGYVGEDV----ESILYKL--------------LTVSDYNV 391 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l-~~~gyvGe~~----~~~l~~l--------------f~~a~~~l 391 (581)
.++||.||||||||++|+++|+.++.+++.++|..- ....++|... ...+... +.......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 689999999999999999999999999999998752 2223333211 1111110 00111111
Q ss_pred HhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCc-
Q 008014 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV- 470 (581)
Q Consensus 392 ~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~- 470 (581)
+...+++|+||||+++.++ +|+.|+.+|+++.+.+|+.+.. ..++....++.+|+|+|..
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~-----~~~i~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT-----SRYVDVHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC-----CceEecCCCCEEEEeeCCcc
Confidence 2356789999999999887 9999999999988888764321 1122234566777777754
Q ss_pred -----ChHHHHHhhhcccCCCCCCh
Q 008014 471 -----DIEKTISERRQDSSIGFGAP 490 (581)
Q Consensus 471 -----~Le~~l~~rrfd~~IgF~~P 490 (581)
.+.+++.+|...-.+.++..
T Consensus 163 ~~g~~~l~~aL~~R~~~i~i~~P~~ 187 (262)
T TIGR02640 163 YAGVHETQDALLDRLITIFMDYPDI 187 (262)
T ss_pred ccceecccHHHHhhcEEEECCCCCH
Confidence 24556666654445555433
No 78
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.44 E-value=1.5e-13 Score=135.81 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=79.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+|+.|..+.. ...|+||+||||||||++|+.+...+-.
T Consensus 4 dI~GQe~aKrAL~iAAa----------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA----------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHH----------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHc----------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 58999999999987774 2379999999999999999999977621
Q ss_pred ---CeEE------ecc----ccc-cccccccchhhhHHHHHh----hhhhhhHHhhccCeEEehhhhhhhhhhhhcccCC
Q 008014 357 ---PFVI------ADA----TTL-TQAGYVGEDVESILYKLL----TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (581)
Q Consensus 357 ---~fv~------i~~----s~l-~~~gyvGe~~~~~l~~lf----~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~ 418 (581)
...+ +.. ..+ ...-|.--.-......++ ......+..++.+|||+||+..+.+.
T Consensus 50 ~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~-------- 121 (206)
T PF01078_consen 50 TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS-------- 121 (206)
T ss_dssp CEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH--------
T ss_pred chHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH--------
Confidence 0000 000 000 000000000000011111 11223567789999999999999877
Q ss_pred CCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcC
Q 008014 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (581)
Q Consensus 419 d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~ 498 (581)
+.++|++.||.+.+.|...+.. +.--.++++|+|.|.-. =+. |+.+...
T Consensus 122 ------vld~Lr~ple~g~v~i~R~~~~--------~~~Pa~f~lv~a~NPcp------CG~------~~~~~~~----- 170 (206)
T PF01078_consen 122 ------VLDALRQPLEDGEVTISRAGGS--------VTYPARFLLVAAMNPCP------CGY------YGDPDNR----- 170 (206)
T ss_dssp ------HHHHHHHHHHHSBEEEEETTEE--------EEEB--EEEEEEE-S-----------------------------
T ss_pred ------HHHHHHHHHHCCeEEEEECCce--------EEEecccEEEEEecccc------ccc------ccccccc-----
Confidence 9999999999888877444432 22345677778766422 000 0000000
Q ss_pred CCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHH
Q 008014 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (581)
Q Consensus 499 ~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~Lsede 544 (581)
=.+.+.....+.+ .++-.+++|||..+.+..++.+|
T Consensus 171 C~Cs~~~~~~Y~~----------rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 171 CRCSPRQIRRYQS----------RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccc----------cccccccccccccccccccccCC
Confidence 0011111222222 26678999999999999887664
No 79
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.42 E-value=1.1e-12 Score=138.53 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=96.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---C
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~ 355 (581)
++|++.+++.+.+.+.. . .....+|||.|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~~----~--------------------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR----L--------------------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHHH----H--------------------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 47889988888877741 1 1123789999999999999999998766 4
Q ss_pred CCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHH
Q 008014 356 VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (581)
Q Consensus 356 ~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~ 431 (581)
.||+.++|..+.+. ...|.. ...+..........+..+.+++||||||+.|... +|..|+.
T Consensus 51 ~pfv~vnc~~~~~~~l~~~lfG~~-~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSENLLDSELFGHE-AGAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChHHHHHHHhccc-cccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 79999999876531 011111 0000000001112345577899999999999988 9999999
Q ss_pred HHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 432 lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
+|+.+.+.- .|. .. ....++++|++++ .++++++.++.|..
T Consensus 116 ~l~~~~~~~--~g~-------~~-~~~~~~RiI~at~-~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 116 VIEYGEFER--VGG-------SQ-TLQVDVRLVCATN-ADLPALAAEGRFRA 156 (329)
T ss_pred HHHcCcEEe--cCC-------Cc-eeccceEEEEech-hhHHHHhhcCchHH
Confidence 999554321 111 11 1234688888886 45666666555433
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.42 E-value=1.2e-12 Score=153.47 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=127.3
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|+ .|+||++.++.+.+.+.. + .+.+++|+||||||||++|+.+|+.
T Consensus 185 ~ld-~~iGr~~ei~~~i~~l~r---------~-----------------------~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 185 KID-PVLGRDDEIRQMIDILLR---------R-----------------------RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCC-cccCCHHHHHHHHHHHhc---------C-----------------------CcCceeEECCCCCCHHHHHHHHHHH
Confidence 344 489999988877766631 0 1368999999999999999999987
Q ss_pred h----------CCCeEEecccccc-ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~-~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
+ +..++.++.+.+. ...|.|+. +..++.++..... ...+.|||||||+.+...+...+ +
T Consensus 232 i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~~------~ 301 (852)
T TIGR03345 232 IAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQAG------Q 301 (852)
T ss_pred HhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCccc------c
Confidence 6 2457777777655 24577776 7778888776532 13578999999999987632111 1
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
..+-+.|+..|+. ..+.+|+||+..+
T Consensus 302 ~d~~n~Lkp~l~~-----------------------G~l~~IgaTT~~e------------------------------- 327 (852)
T TIGR03345 302 GDAANLLKPALAR-----------------------GELRTIAATTWAE------------------------------- 327 (852)
T ss_pred ccHHHHhhHHhhC-----------------------CCeEEEEecCHHH-------------------------------
Confidence 1144567777772 2356677776321
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
+.+.+. ..|.|.+||. .|.+..++.++..+|+. .+.+.|++ .+.+.+++++..
T Consensus 328 ------~~~~~~--------~d~AL~rRf~-~i~v~eps~~~~~~iL~----~~~~~~e~-----~~~v~i~d~al~ 380 (852)
T TIGR03345 328 ------YKKYFE--------KDPALTRRFQ-VVKVEEPDEETAIRMLR----GLAPVLEK-----HHGVLILDEAVV 380 (852)
T ss_pred ------Hhhhhh--------ccHHHHHhCe-EEEeCCCCHHHHHHHHH----HHHHhhhh-----cCCCeeCHHHHH
Confidence 111111 4689999995 78999999999999987 66666644 345777777654
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-12 Score=137.13 Aligned_cols=184 Identities=18% Similarity=0.279 Sum_probs=119.2
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~ 409 (581)
-+++||+||||||||+.||-||+..|..+-...+.|+.+.| ...+.++.+..++.-.+..+-+|||||+|++..
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG------~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG------AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc------hHHHHHHHHHHHHHhhcccceEEEehhhHHHHH
Confidence 37999999999999999999999999999888888887543 233344433334433445677899999999999
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCC
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFG 488 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~ 488 (581)
+|.... +++...++|..+|-- ++. -..+++++.++|.++ +|.++. .|+|..|+|+
T Consensus 458 eRnkty-----mSEaqRsaLNAlLfR------------TGd------qSrdivLvlAtNrpgdlDsAV~-DRide~veFp 513 (630)
T KOG0742|consen 458 ERNKTY-----MSEAQRSALNALLFR------------TGD------QSRDIVLVLATNRPGDLDSAVN-DRIDEVVEFP 513 (630)
T ss_pred Hhchhh-----hcHHHHHHHHHHHHH------------hcc------cccceEEEeccCCccchhHHHH-hhhhheeecC
Confidence 987654 444466777777751 111 133467777888777 666665 5789999999
Q ss_pred ChhhhhhhcCCCchHHHHHHHHhh-hcchhhhh-cCCChhhhcccCeEEEcCC-CCHHHHHHHHh
Q 008014 489 APVRANMRAGGVTDAVVTSSLMET-VESSDLIA-YGLIPEFVGRFPVLVSLLA-LTENQLVQVLT 550 (581)
Q Consensus 489 ~P~~e~~~~~~~~~~~~~~~l~~~-v~~~dl~~-~gl~PEfl~Rf~~iV~l~~-LsedeL~~Il~ 550 (581)
.|.+++ ....+..++.. +...+..+ -+....+.......+.+.. ++++-+.+..+
T Consensus 514 LPGeEE-------Rfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 514 LPGEEE-------RFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CCChHH-------HHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 998875 33444444433 32222221 1223333444466677776 44444444433
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.40 E-value=2.8e-12 Score=139.04 Aligned_cols=82 Identities=33% Similarity=0.505 Sum_probs=62.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++++++.+..........||||||||++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999988875421 1223444443322222236789999999999876
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.|+.|+..|++
T Consensus 108 --------------~q~~LL~~le~ 118 (413)
T PRK13342 108 --------------QQDALLPHVED 118 (413)
T ss_pred --------------HHHHHHHHhhc
Confidence 79999999984
No 83
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=2.7e-12 Score=146.14 Aligned_cols=105 Identities=30% Similarity=0.413 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+||||+.+++.|...+.. .+ -...+||+||+||||||+|+++|+.++..
T Consensus 17 EVIGQe~Vv~~L~~aL~~---------gR----------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 17 SLVGQEHVVRALTHALDG---------GR----------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHcCcHHHHHHHHHHHhc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 489999999999888741 00 01345899999999999999999988532
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
+++++..+ -.|. ..++++++............|+||||+|.|...
T Consensus 66 ~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rgV---DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--- 134 (830)
T PRK07003 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRGV---DEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--- 134 (830)
T ss_pred cCCCCCCCcccHHHHHHhcCCCceEEEecccc-----cccH---HHHHHHHHHHHhccccCCceEEEEeChhhCCHH---
Confidence 22222221 0111 123444433222122245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------A~NALLKtLEE 145 (830)
T PRK07003 135 -----------AFNAMLKTLEE 145 (830)
T ss_pred -----------HHHHHHHHHHh
Confidence 79999999993
No 84
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.37 E-value=5.6e-12 Score=138.28 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=83.6
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
...+.+.|.+.|+|++++++.+..++. ..++|||.||||||||++|
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHH
Confidence 566889999999999999998887773 3489999999999999999
Q ss_pred HHHHHHhCC--CeEEeccccccccccccch-hhhHH-HHHhhhh-hhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 348 KTLARYVNV--PFVIADATTLTQAGYVGED-VESIL-YKLLTVS-DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 348 raLA~~l~~--~fv~i~~s~l~~~gyvGe~-~~~~l-~~lf~~a-~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
++++...+. +|..+.+.-.+..+.+|.. +...- ...|... ...+ ....+||+|||++++++
T Consensus 57 raLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L--~~A~lLfLDEI~rasp~------------ 122 (498)
T PRK13531 57 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYL--PEAEIVFLDEIWKAGPA------------ 122 (498)
T ss_pred HHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcc--ccccEEeecccccCCHH------------
Confidence 999987743 4544433311223344431 00000 0111100 0001 12349999999999988
Q ss_pred hhHHHHHHHHHhCceeee
Q 008014 423 EGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~i 440 (581)
+|++||++|+++.+++
T Consensus 123 --~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 123 --ILNTLLTAINERRFRN 138 (498)
T ss_pred --HHHHHHHHHHhCeEec
Confidence 9999999999887764
No 85
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.37 E-value=6e-12 Score=140.71 Aligned_cols=117 Identities=31% Similarity=0.441 Sum_probs=78.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++||+.+++.+..++.. ..+.++||+||||||||++|+++++.+
T Consensus 66 ~iiGqs~~i~~l~~al~~--------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 113 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--------------------------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKN 113 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 389999999988765520 012689999999999999999998653
Q ss_pred -------CCCeEEeccccc--cccc----cccchhhhHH--HHHh------hhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 355 -------NVPFVIADATTL--TQAG----YVGEDVESIL--YKLL------TVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 355 -------~~~fv~i~~s~l--~~~g----yvGe~~~~~l--~~lf------~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
+.+|+.++|+.. .+.+ ..|....... ...+ +.....+..+.+++||||||+.|++.
T Consensus 114 ~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--- 190 (531)
T TIGR02902 114 PASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--- 190 (531)
T ss_pred cCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH---
Confidence 368999998742 1111 1111000000 0000 01112344577899999999999988
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeee
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
+|+.||+.||.+.+.+
T Consensus 191 -----------~q~~LL~~Le~~~~~~ 206 (531)
T TIGR02902 191 -----------QMNKLLKVLEDRKVFL 206 (531)
T ss_pred -----------HHHHHHHHHHhCeeee
Confidence 8999999999766654
No 86
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=3.6e-13 Score=123.32 Aligned_cols=124 Identities=25% Similarity=0.373 Sum_probs=76.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
+|+|+||||||||++|+.+|+.++.+++.++++...+ .++.|.-........+......-....+++++||||+++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999999999999987443 222222100000000011111112247899999999999877
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
+++.|+.++|+..+.+++.+.....+... ....++.+|+|+|..+
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPRD 125 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSST
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCCC
Confidence 99999999998888776555433222211 2233689999988655
No 87
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.36 E-value=3.1e-12 Score=142.85 Aligned_cols=176 Identities=20% Similarity=0.336 Sum_probs=112.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++.+++.+.+.+.. . .....+|||+|++|||||++|++|....
T Consensus 197 ~liG~s~~~~~~~~~~~~----~--------------------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARV----V--------------------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHHH----H--------------------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 578999999988877741 1 0123689999999999999999999875
Q ss_pred CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.||+.++|..+.+. ...|.. .+.+..........+..+.+++||||||+.+... +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 579999999887531 011111 0000000000111244567899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHH
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~ 510 (581)
++|+.+.+... + ... . ...++.+|++++ .++++++..+.
T Consensus 312 ~~l~~~~~~~~--~-----~~~--~-~~~~~riI~~s~-~~l~~~~~~~~------------------------------ 350 (534)
T TIGR01817 312 RVLQEGEFERV--G-----GNR--T-LKVDVRLVAATN-RDLEEAVAKGE------------------------------ 350 (534)
T ss_pred HHHhcCcEEEC--C-----CCc--e-EeecEEEEEeCC-CCHHHHHHcCC------------------------------
Confidence 99995543311 1 111 1 123578888876 34444443322
Q ss_pred hhhcchhhhhcCCChhhhcccCe-EEEcCCCC--HHHHHHHHhh
Q 008014 511 ETVESSDLIAYGLIPEFVGRFPV-LVSLLALT--ENQLVQVLTE 551 (581)
Q Consensus 511 ~~v~~~dl~~~gl~PEfl~Rf~~-iV~l~~Ls--edeL~~Il~e 551 (581)
|.++|..|+.. .+.+++|. .+|+..++..
T Consensus 351 ------------f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~ 382 (534)
T TIGR01817 351 ------------FRADLYYRINVVPIFLPPLRERREDIPLLAEA 382 (534)
T ss_pred ------------CCHHHHHHhcCCeeeCCCcccccccHHHHHHH
Confidence 55677777643 46677776 4667667663
No 88
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.36 E-value=4e-12 Score=149.19 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=84.6
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|+. |+|++..++.+.+.+.. + .+.+++|+||||||||++|+.+|..
T Consensus 176 ~l~~-vigr~~ei~~~i~iL~r---------~-----------------------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 176 KLDP-VIGRDEEIRRTIQVLQR---------R-----------------------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCc-CCCCHHHHHHHHHHHhc---------C-----------------------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 4454 89999988888777741 0 1368999999999999999999988
Q ss_pred h----------CCCeEEecccccc-ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~-~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
+ +.+++.++...+. ...|.|+. +..++.++..... ...+.|||||||+.+...+.. ..+
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~------~~~ 292 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA------DGA 292 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCC------ccc
Confidence 7 6788888888754 24577775 7777777765321 135789999999999865321 111
Q ss_pred hhHHHHHHHHHh
Q 008014 423 EGVQQALLKMLE 434 (581)
Q Consensus 423 ~~vq~aLL~lLE 434 (581)
..+++.|...|+
T Consensus 293 ~d~~~~lkp~l~ 304 (857)
T PRK10865 293 MDAGNMLKPALA 304 (857)
T ss_pred hhHHHHhcchhh
Confidence 226777777666
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=5.2e-12 Score=132.29 Aligned_cols=105 Identities=30% Similarity=0.402 Sum_probs=69.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC---
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~--- 355 (581)
|+||+++++.|...+.. . ...|+||+||||||||++|+++|+.+.
T Consensus 15 ~~g~~~~~~~L~~~~~~---------~-----------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARD---------G-----------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhc---------C-----------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 78999999988876631 0 115799999999999999999999872
Q ss_pred --CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 356 --~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
..++++++++.. |.+.-+...+.+.............|++|||+|.+... .|++|++.|
T Consensus 63 ~~~~~~eln~sd~~-----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~l 123 (319)
T PLN03025 63 YKEAVLELNASDDR-----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTM 123 (319)
T ss_pred Cccceeeecccccc-----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHH
Confidence 235566665432 22111111111211111111134679999999999877 799999999
Q ss_pred h
Q 008014 434 E 434 (581)
Q Consensus 434 E 434 (581)
|
T Consensus 124 E 124 (319)
T PLN03025 124 E 124 (319)
T ss_pred h
Confidence 8
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.35 E-value=1.4e-11 Score=127.01 Aligned_cols=110 Identities=29% Similarity=0.362 Sum_probs=74.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+++||+.++..|..++.. + .-.++||+||||||||+.|+++|+.+..
T Consensus 37 e~~gQe~vV~~L~~a~~~---~-----------------------------~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR---R-----------------------------ILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred hhcchHHHHHHHHHHHhh---c-----------------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 379999999999998851 0 0168999999999999999999999855
Q ss_pred -----CeEEeccccccccccccchhhhHHHHHhhhh--hhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 357 -----PFVIADATTLTQAGYVGEDVESILYKLLTVS--DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 357 -----~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a--~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
.+.+.++++......+.+.+ +.+.++.... ..........|++|||.|.|+.+ .|.+|
T Consensus 85 ~~~~~rvl~lnaSderGisvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aL 149 (346)
T KOG0989|consen 85 QLFPCRVLELNASDERGISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAAL 149 (346)
T ss_pred cccccchhhhcccccccccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHH
Confidence 23455555544333333321 1111211111 00011123479999999999988 99999
Q ss_pred HHHHh
Q 008014 430 LKMLE 434 (581)
Q Consensus 430 L~lLE 434 (581)
++.||
T Consensus 150 rr~mE 154 (346)
T KOG0989|consen 150 RRTME 154 (346)
T ss_pred HHHHh
Confidence 99999
No 91
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.35 E-value=4.5e-12 Score=146.54 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=122.7
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++. ++|.+..++.+.+.+.. + .+.++||+||||||||++|+.+|..
T Consensus 184 ~~~~-liGR~~ei~~~i~iL~r---------~-----------------------~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 184 GIDP-LIGREKELERAIQVLCR---------R-----------------------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCc-CcCCCHHHHHHHHHHhc---------c-----------------------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444 89999999999887741 0 1368899999999999999999976
Q ss_pred h----------CCCeEEecccccc-ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~-~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
+ +..++.++.+.+. ...|.|+. +..++.++.... +..++||||||||.+...+.. ...+
T Consensus 231 i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~----~~~~~ILfIDEIh~L~g~g~~-----~~g~ 300 (758)
T PRK11034 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGGQ 300 (758)
T ss_pred HHhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHH----hcCCCEEEeccHHHHhccCCC-----CCcH
Confidence 4 3445555554433 23466765 666666665432 356789999999999765321 1111
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
..+.+.|..+++ ...+.+|++|+..+..
T Consensus 301 ~d~~nlLkp~L~-----------------------~g~i~vIgATt~~E~~----------------------------- 328 (758)
T PRK11034 301 VDAANLIKPLLS-----------------------SGKIRVIGSTTYQEFS----------------------------- 328 (758)
T ss_pred HHHHHHHHHHHh-----------------------CCCeEEEecCChHHHH-----------------------------
Confidence 225555666665 2346678888743211
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
+.+ ...|.+.+||. .|.++.++.++..+|+. .+..+|+. .+++.+++++.
T Consensus 329 --------~~~--------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~----~~~~~ye~-----~h~v~i~~~al 378 (758)
T PRK11034 329 --------NIF--------EKDRALARRFQ-KIDITEPSIEETVQIIN----GLKPKYEA-----HHDVRYTAKAV 378 (758)
T ss_pred --------HHh--------hccHHHHhhCc-EEEeCCCCHHHHHHHHH----HHHHHhhh-----ccCCCcCHHHH
Confidence 111 14588889995 69999999999999998 66666644 44566666654
No 92
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=5.2e-12 Score=133.66 Aligned_cols=138 Identities=22% Similarity=0.355 Sum_probs=83.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
.|+||+++|+.|..++.+ ...+|+||.|+||||||++||++++.+.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~--------------------------------~~~~~vLl~G~pG~gKT~lar~la~llP~~ 56 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID--------------------------------PGIGGVLVFGDRGTGKSTAVRALAALLPLI 56 (334)
T ss_pred HhCCHHHHHHHHHHHHhc--------------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCc
Confidence 489999999988754420 0116999999999999999999999882
Q ss_pred -----CC--eEEeccc-cc----------------------cccccccc-hhhhHH-HHHhhhhhhhHHhhccCeEEehh
Q 008014 356 -----VP--FVIADAT-TL----------------------TQAGYVGE-DVESIL-YKLLTVSDYNVAAAQQGIVYIDE 403 (581)
Q Consensus 356 -----~~--fv~i~~s-~l----------------------~~~gyvGe-~~~~~l-~~lf~~a~~~l~~a~~~ILfIDE 403 (581)
.+ +..+.+. ++ ++...+|. +....+ ..-+....+.+..+.+++||+||
T Consensus 57 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDE 136 (334)
T PRK13407 57 KAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDE 136 (334)
T ss_pred chhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecC
Confidence 21 1111111 00 01112332 111111 01111112234446779999999
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 404 ID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
|+.+.++ +|+.|++.|+++.+++...|.... ...++++|++.|.
T Consensus 137 Inrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~~--------~p~rfiviAt~NP 180 (334)
T PRK13407 137 VNLLEDH--------------IVDLLLDVAQSGENVVEREGLSIR--------HPARFVLVGSGNP 180 (334)
T ss_pred hHhCCHH--------------HHHHHHHHHHcCCeEEEECCeEEe--------cCCCEEEEecCCc
Confidence 9999988 999999999977765543443221 1235677777764
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=8.3e-12 Score=137.05 Aligned_cols=105 Identities=30% Similarity=0.356 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|..++.. .+ -...+||+||+|||||++|+.+|+.++..
T Consensus 19 dvVGQe~iv~~L~~~i~~---------~r----------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 19 DVIHQDLAIGALQNALKS---------GK----------------------IGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhChHHHHHHHHHHHHc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 389999999998888841 00 01247899999999999999999988642
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++++++.. -.|. ..++++.+............|+||||+|.+...
T Consensus 68 ~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-----~~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--- 136 (484)
T PRK14956 68 NPIGNEPCNECTSCLEITKGISSDVLEIDAAS-----NRGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--- 136 (484)
T ss_pred cccCccccCCCcHHHHHHccCCccceeechhh-----cccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH---
Confidence 22222211 1111 223333332222112234569999999999887
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 137 -----------A~NALLKtLEE 147 (484)
T PRK14956 137 -----------SFNALLKTLEE 147 (484)
T ss_pred -----------HHHHHHHHhhc
Confidence 89999999993
No 94
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=8.9e-12 Score=137.45 Aligned_cols=104 Identities=32% Similarity=0.445 Sum_probs=70.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|..++... + .+..+||+|||||||||+|+++|+.++.
T Consensus 15 divGq~~i~~~L~~~i~~~----------~---------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKN----------S---------------------ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred HccCcHHHHHHHHHHHHcC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4899999999888777410 0 1145799999999999999999998754
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++.++++. ..|. ..++++.+............||||||+|.+...
T Consensus 64 ~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--- 132 (472)
T PRK14962 64 NRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--- 132 (472)
T ss_pred cCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---
Confidence 244444422 1111 223343333222112245679999999999866
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.|+
T Consensus 133 -----------a~~~LLk~LE 142 (472)
T PRK14962 133 -----------AFNALLKTLE 142 (472)
T ss_pred -----------HHHHHHHHHH
Confidence 7899999999
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.6e-12 Score=142.66 Aligned_cols=139 Identities=27% Similarity=0.356 Sum_probs=87.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+||||+.+++.|..++... + -...+||+||+|||||++|+.+|+.++.
T Consensus 17 dVIGQe~vv~~L~~al~~g----------R---------------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQ----------R---------------------LHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhC----------C---------------------CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4899999999999888510 0 0134589999999999999999998864
Q ss_pred ----------------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 357 ----------------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
.+++++..+ -.| -..++++.+.....-......|+||||+|.|+
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-----~~g---VDdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-----NRG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 122222211 111 12244444333222223456799999999998
Q ss_pred hhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC-cChHHHHHhhhcccCCCC
Q 008014 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF-VDIEKTISERRQDSSIGF 487 (581)
Q Consensus 409 ~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~-~~Le~~l~~rrfd~~IgF 487 (581)
.. .+++||+.||+- ..+++||++++. ..+...++.|. ..+.|
T Consensus 138 ~~--------------AaNALLKTLEEP---------------------P~~v~FILaTtep~kLlpTIrSRC--q~f~f 180 (700)
T PRK12323 138 NH--------------AFNAMLKTLEEP---------------------PEHVKFILATTDPQKIPVTVLSRC--LQFNL 180 (700)
T ss_pred HH--------------HHHHHHHhhccC---------------------CCCceEEEEeCChHhhhhHHHHHH--Hhccc
Confidence 77 899999999941 123444444443 33666666665 34455
Q ss_pred CChhh
Q 008014 488 GAPVR 492 (581)
Q Consensus 488 ~~P~~ 492 (581)
..+..
T Consensus 181 ~~ls~ 185 (700)
T PRK12323 181 KQMPP 185 (700)
T ss_pred CCCCh
Confidence 54443
No 96
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.34 E-value=1e-11 Score=130.93 Aligned_cols=148 Identities=18% Similarity=0.320 Sum_probs=95.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|.+.+++.+.+.+... .....+|||.|++||||+++|++|....
T Consensus 7 ~liG~S~~~~~~~~~i~~~------------------------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~ 56 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRL------------------------------APLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (326)
T ss_pred ccEECCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCcc
Confidence 4799999999998888511 1123789999999999999999998665
Q ss_pred CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.||+.++|..+.+. .+.|.. ...+..........+..+.+++||||||+.+... +|..|+
T Consensus 57 ~~pfv~v~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~ 121 (326)
T PRK11608 57 QGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLL 121 (326)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcccc-ccccCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHH
Confidence 479999999986421 111211 0000000000012245577899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrf 481 (581)
.+|+.+.+.- .+. . ..+ ..++.+|++++ .++++++.++.|
T Consensus 122 ~~l~~~~~~~--~g~-----~--~~~-~~~~RiI~~s~-~~l~~l~~~g~f 161 (326)
T PRK11608 122 RVIEYGELER--VGG-----S--QPL-QVNVRLVCATN-ADLPAMVAEGKF 161 (326)
T ss_pred HHHhcCcEEe--CCC-----C--cee-eccEEEEEeCc-hhHHHHHHcCCc
Confidence 9999544321 010 0 111 23578888876 456666655544
No 97
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=8.8e-12 Score=145.93 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=85.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+|+++.++.+.+.+.. ..+.+++|+||||||||++|+.+|..+
T Consensus 180 ~~igr~~ei~~~~~~L~r--------------------------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 180 PVIGREKEIERVIQILGR--------------------------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred CCCCcHHHHHHHHHHHcc--------------------------------cccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 489999999999888741 023689999999999999999999876
Q ss_pred -------CCCeEEecccccc-ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 355 -------~~~fv~i~~s~l~-~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
+.+++.++++.+. ...|.|+. +..+..+++.+.. ..+.|||||||+.+...+... + +..+.
T Consensus 228 ~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~---g---~~~~a 296 (821)
T CHL00095 228 DVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAE---G---AIDAA 296 (821)
T ss_pred CCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCC---C---cccHH
Confidence 3678899988754 35688876 7788888876532 457899999999998653211 1 11266
Q ss_pred HHHHHHHh
Q 008014 427 QALLKMLE 434 (581)
Q Consensus 427 ~aLL~lLE 434 (581)
+.|...|.
T Consensus 297 ~lLkp~l~ 304 (821)
T CHL00095 297 NILKPALA 304 (821)
T ss_pred HHhHHHHh
Confidence 77777776
No 98
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33 E-value=7e-12 Score=133.24 Aligned_cols=137 Identities=23% Similarity=0.375 Sum_probs=83.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
.|+||+++|+.|...+.++ .-+++||.|++|||||++||++++.+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p--------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP--------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred HHhChHHHHHHHHHhccCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4899999999988776410 127899999999999999999988772
Q ss_pred -----CCeEEecccc---------------------------------cccccccc-chhhhHHHHHhhh-hhhhHHhhc
Q 008014 356 -----VPFVIADATT---------------------------------LTQAGYVG-EDVESILYKLLTV-SDYNVAAAQ 395 (581)
Q Consensus 356 -----~~fv~i~~s~---------------------------------l~~~gyvG-e~~~~~l~~lf~~-a~~~l~~a~ 395 (581)
.||. .+... .++...+| -+++..+..-... ....+..+.
T Consensus 66 ~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~ 144 (350)
T CHL00081 66 EVVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN 144 (350)
T ss_pred CccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecC
Confidence 2232 00000 00011111 1111111111000 122345677
Q ss_pred cCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
.++||+|||+++.+. +|+.|++.|+.+.+.+...|... .. ..++++|++.|.
T Consensus 145 ~GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s~-------~~-p~rfiviaT~np 196 (350)
T CHL00081 145 RGILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGISI-------RH-PARFVLVGSGNP 196 (350)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCeee-------ec-CCCEEEEeccCc
Confidence 899999999999988 99999999997666553333221 11 235677777663
No 99
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=8.4e-12 Score=134.19 Aligned_cols=147 Identities=21% Similarity=0.372 Sum_probs=104.3
Q ss_pred hccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH--
Q 008014 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY-- 353 (581)
Q Consensus 276 d~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~-- 353 (581)
.+.+||.+...+++.+.+.. | .....+||+.|++||||+.+|++|...
T Consensus 77 ~~~LIG~~~~~~~~~eqik~-~-----------------------------ap~~~~vLi~GetGtGKel~A~~iH~~s~ 126 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA-Y-----------------------------APSGLPVLIIGETGTGKELFARLIHALSA 126 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh-h-----------------------------CCCCCcEEEecCCCccHHHHHHHHHHhhh
Confidence 34589999999999888852 1 112379999999999999999999743
Q ss_pred --hCCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 354 --VNVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 354 --l~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
.+.||+.+||+++.+. ...|.. .+.++.........+..+.+|+||+|||..+.+. .|.
T Consensus 127 r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~ 191 (403)
T COG1221 127 RRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQE 191 (403)
T ss_pred cccCCCEEEEEHHHhCcCHHHHHHhccc-cceeecccCCcCchheecCCCEEehhhhhhCCHh--------------HHH
Confidence 3679999999997652 233332 2333333333344567788999999999999998 999
Q ss_pred HHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHh
Q 008014 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (581)
Q Consensus 428 aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~ 478 (581)
.|+.+||.++++- -|. . .....++++||||+ .++++.+..
T Consensus 192 kLl~~le~g~~~r--vG~-----~---~~~~~dVRli~AT~-~~l~~~~~~ 231 (403)
T COG1221 192 KLLRVLEEGEYRR--VGG-----S---QPRPVDVRLICATT-EDLEEAVLA 231 (403)
T ss_pred HHHHHHHcCceEe--cCC-----C---CCcCCCceeeeccc-cCHHHHHHh
Confidence 9999999776652 011 1 12355789999998 445555443
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.8e-11 Score=139.01 Aligned_cols=104 Identities=31% Similarity=0.363 Sum_probs=70.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+||||+.+++.|...+... + -.| +||+||+||||||+|+++|+.++.
T Consensus 17 divGQe~vv~~L~~~l~~~----------r----------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 17 EVVGQEHVLTALANALDLG----------R----------------------LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HhcCcHHHHHHHHHHHHcC----------C----------------------CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4899999999998888410 0 034 589999999999999999998854
Q ss_pred C------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 357 P------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 357 ~------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
. ++++++++ ..+. ..++++.......-......|++|||+|+|+..
T Consensus 65 ~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~V---ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-- 134 (647)
T PRK07994 65 ETGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-- 134 (647)
T ss_pred ccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--
Confidence 2 22333221 1111 223444433322212245679999999999987
Q ss_pred hcccCCCCchhhHHHHHHHHHhC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 ------------a~NALLKtLEE 145 (647)
T PRK07994 135 ------------SFNALLKTLEE 145 (647)
T ss_pred ------------HHHHHHHHHHc
Confidence 89999999994
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.1e-11 Score=138.02 Aligned_cols=105 Identities=30% Similarity=0.339 Sum_probs=72.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+||||+.+++.|..++... + -+..+||+||+|||||++|+++|+.++..
T Consensus 17 divGq~~v~~~L~~~~~~~----------~---------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ----------Y---------------------LHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC----------C---------------------CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4899999999999888410 0 01346899999999999999999988542
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++++++++ ..|. ..++++.+............|++|||+|.|+..
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~v---~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--- 134 (509)
T PRK14958 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTKV---EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--- 134 (509)
T ss_pred CCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCCH---HHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---
Confidence 34444322 1111 224444443322222345679999999999987
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------a~naLLk~LEe 145 (509)
T PRK14958 135 -----------SFNALLKTLEE 145 (509)
T ss_pred -----------HHHHHHHHHhc
Confidence 79999999993
No 102
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.2e-11 Score=141.04 Aligned_cols=104 Identities=29% Similarity=0.365 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+||+.+++.|..++... + -.| +||+||+|||||++||++|+.++.
T Consensus 17 dIIGQe~Iv~~LknaI~~~--r------------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQ--R------------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HhcCcHHHHHHHHHHHHhC--C------------------------------CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3899999999988887410 0 035 489999999999999999998865
Q ss_pred Ce------------------------EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 357 PF------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 357 ~f------------------------v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
.- +++++.+ ..+. ..++++..............|+||||+|+|...
T Consensus 65 e~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-----~~kV---DdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-- 134 (944)
T PRK14949 65 EQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----RTKV---DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-- 134 (944)
T ss_pred ccCCCCCCCCCchHHHHHhcCCCceEEEecccc-----ccCH---HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--
Confidence 31 1111110 1111 223444433322222345679999999999877
Q ss_pred hcccCCCCchhhHHHHHHHHHhC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 ------------AqNALLKtLEE 145 (944)
T PRK14949 135 ------------SFNALLKTLEE 145 (944)
T ss_pred ------------HHHHHHHHHhc
Confidence 89999999994
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.30 E-value=1.8e-11 Score=128.53 Aligned_cols=83 Identities=27% Similarity=0.440 Sum_probs=64.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC---eEEeccccccccccccchhhhHHHHHhhhhhhhH-HhhccCeEEehhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDK 406 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~---fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l-~~a~~~ILfIDEID~ 406 (581)
..++|+||||||||+|||.|+.-...+ |++++++.-. .+-++++|+.+.... .-.+..|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 578999999999999999999888665 7877775432 244667777665422 235678999999999
Q ss_pred hhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 407 ITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 407 l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
+... .|+.||...|.+
T Consensus 234 FNks--------------QQD~fLP~VE~G 249 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENG 249 (554)
T ss_pred hhhh--------------hhhcccceeccC
Confidence 9987 789999999843
No 104
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.30 E-value=3.2e-11 Score=134.78 Aligned_cols=152 Identities=22% Similarity=0.362 Sum_probs=101.9
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH-----
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~----- 353 (581)
++|++.+++.+.+.+.. + .....+|||.|++||||+++|++|...
T Consensus 221 iiG~S~~m~~~~~~i~~-~-----------------------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTILL-Y-----------------------------ARSSAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHHH-H-----------------------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 79999999988888741 1 112368999999999999999999887
Q ss_pred ------hCCCeEEecccccccc----ccccchhhhHHHHHhh-hhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 ------VNVPFVIADATTLTQA----GYVGEDVESILYKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 ------l~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~-~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
.+.||+.++|+.+.+. ...|+. .+.+...-. .....+..+.+++||||||+.|...
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------------ 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYE-EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------------ 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCc-cccccCccccccCCchhccCCCEEEEcChHhCCHH------------
Confidence 3679999999987531 112221 111110000 0112344577899999999999988
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCC
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~Ig 486 (581)
+|..|+++|+++.+.- .|. .. .+ ..++++|++++ .++++.+.+++|...+.
T Consensus 338 --~Q~kLl~~L~e~~~~r--~G~-----~~--~~-~~dvRiIaat~-~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 338 --LQTRLLRVLEEKEVTR--VGG-----HQ--PV-PVDVRVISATH-CDLEEDVRQGRFRRDLF 388 (538)
T ss_pred --HHHHHHhhhhcCeEEe--cCC-----Cc--ee-ccceEEEEecC-CCHHHHHhcccchHHHH
Confidence 9999999999665431 111 11 11 34588899887 46777777776654433
No 105
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.30 E-value=2.1e-11 Score=135.74 Aligned_cols=148 Identities=22% Similarity=0.347 Sum_probs=96.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++.+++.+.+.+.. +...+.+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~~------------------------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEV------------------------------VAASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHHH------------------------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 478888888888877741 11124799999999999999999998875
Q ss_pred CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.||+.++|..+.+. .+.|.. ...+..........+..+.+++||||||+.+... +|..|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 579999999987531 111211 0001000011112345578899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrf 481 (581)
++|+.+.+.- .|. .. . ...++.+|++++ .++++.+..+.|
T Consensus 303 ~~l~~~~~~~--~g~-----~~--~-~~~~~RiI~~t~-~~l~~~~~~~~f 342 (509)
T PRK05022 303 RVLQYGEIQR--VGS-----DR--S-LRVDVRVIAATN-RDLREEVRAGRF 342 (509)
T ss_pred HHHhcCCEee--CCC-----Cc--c-eecceEEEEecC-CCHHHHHHcCCc
Confidence 9999554321 011 11 1 123578888887 346666655444
No 106
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.9e-11 Score=137.93 Aligned_cols=105 Identities=29% Similarity=0.376 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|..++.. . + ....+||+||+|||||++|+++|+.++.
T Consensus 16 dVIGQe~vv~~L~~aI~~---------g-r---------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 16 ELVGQNHVSRALSSALER---------G-R---------------------LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999888841 0 0 0146689999999999999999998854
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++++++++- .+ -..++++..............|++|||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--- 133 (702)
T PRK14960 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--- 133 (702)
T ss_pred cCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---
Confidence 2333433221 11 1234444443332222345679999999999877
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 134 -----------A~NALLKtLEE 144 (702)
T PRK14960 134 -----------SFNALLKTLEE 144 (702)
T ss_pred -----------HHHHHHHHHhc
Confidence 79999999993
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=1.8e-11 Score=143.91 Aligned_cols=184 Identities=22% Similarity=0.260 Sum_probs=120.4
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++. |+|++..++.+.+.+.. + .+.+++|+||||||||++|+.+|..
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r---------~-----------------------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSR---------R-----------------------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhc---------C-----------------------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 4444 89999988888777741 0 2368899999999999999999987
Q ss_pred h----------CCCeEEecccccc-ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCch
Q 008014 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~-~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~ 422 (581)
+ +.+++.++...+. ...|.|+. +..+..++..... ...+.|||||||+.+...+... .+
T Consensus 218 i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~~------~~ 287 (852)
T TIGR03346 218 IVNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKAE------GA 287 (852)
T ss_pred HhccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCCc------ch
Confidence 5 5677888777654 23577765 6677777765421 1357899999999997642211 11
Q ss_pred hhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCch
Q 008014 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 423 ~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~ 502 (581)
..+++.|..+++ ...+.+|++|+..+
T Consensus 288 ~d~~~~Lk~~l~-----------------------~g~i~~IgaTt~~e------------------------------- 313 (852)
T TIGR03346 288 MDAGNMLKPALA-----------------------RGELHCIGATTLDE------------------------------- 313 (852)
T ss_pred hHHHHHhchhhh-----------------------cCceEEEEeCcHHH-------------------------------
Confidence 125555555554 23466788877322
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
+...+. ..+.+.+||.. |.+..++.++..+|+. .+..+|.. .+.+.+++++.
T Consensus 314 ------~r~~~~--------~d~al~rRf~~-i~v~~p~~~~~~~iL~----~~~~~~e~-----~~~v~~~d~~i 365 (852)
T TIGR03346 314 ------YRKYIE--------KDAALERRFQP-VFVDEPTVEDTISILR----GLKERYEV-----HHGVRITDPAI 365 (852)
T ss_pred ------HHHHhh--------cCHHHHhcCCE-EEeCCCCHHHHHHHHH----HHHHHhcc-----ccCCCCCHHHH
Confidence 111111 45888889965 6778889999988887 55555532 34444454443
No 108
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.2e-11 Score=127.18 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=67.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.+..++.. . + -+..+||+||+|||||++|+++|+.+...
T Consensus 17 ~iiGq~~~~~~l~~~~~~---------~-~---------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSL---------G-R---------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred hccChHHHHHHHHHHHHc---------C-C---------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999888741 0 0 01346899999999999999999988532
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++.+++++ .. . ...++++.+............|++|||+|++...
T Consensus 66 ~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~--~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--- 134 (363)
T PRK14961 66 NGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RT--K-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--- 134 (363)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---
Confidence 11121110 00 1 1223333332211111234569999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------a~naLLk~lEe 145 (363)
T PRK14961 135 -----------SFNALLKTLEE 145 (363)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999993
No 109
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.27 E-value=2.4e-11 Score=128.73 Aligned_cols=137 Identities=24% Similarity=0.379 Sum_probs=82.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+||+++|+.|...+.. ...++++|.|+||+||||++|++++.+
T Consensus 5 ~ivgq~~~~~al~~~~~~--------------------------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID--------------------------------PKIGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcC--------------------------------CCCCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 489999999988655531 013789999999999999999999877
Q ss_pred ----CCCeE-------------Ee--cc-------------cc----ccccccccch-hhhHH-HHHhhhhhhhHHhhcc
Q 008014 355 ----NVPFV-------------IA--DA-------------TT----LTQAGYVGED-VESIL-YKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 355 ----~~~fv-------------~i--~~-------------s~----l~~~gyvGe~-~~~~l-~~lf~~a~~~l~~a~~ 396 (581)
+.++- +. +. .+ .++..++|.. ....+ ...+......+.++.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~ 132 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR 132 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC
Confidence 22221 00 00 01 0011233331 11111 0111112233455778
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCC
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn 468 (581)
++||||||+++.+. +|+.|+++|+.+.+.+...|... .. ..++++|++.|
T Consensus 133 GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~-------~~-~~r~iviat~n 182 (337)
T TIGR02030 133 GILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISI-------RH-PARFVLVGSGN 182 (337)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEE-------Ec-CCCEEEEeccc
Confidence 99999999999887 99999999996654443333221 11 23567777765
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.27 E-value=4.8e-11 Score=137.50 Aligned_cols=82 Identities=29% Similarity=0.421 Sum_probs=59.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHH-hhccCeEEehhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEID~l~~ 409 (581)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..+++.+..+..... .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999888875311 1 112222222211111 12457999999999987
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
. .|+.|+..+++
T Consensus 124 ~--------------qQdaLL~~lE~ 135 (725)
T PRK13341 124 A--------------QQDALLPWVEN 135 (725)
T ss_pred H--------------HHHHHHHHhcC
Confidence 6 78999999983
No 111
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.1e-11 Score=139.67 Aligned_cols=104 Identities=34% Similarity=0.368 Sum_probs=69.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+||||+.+++.|...+.. . ...| +||+||+|||||++|++||+.++.
T Consensus 16 eiiGqe~v~~~L~~~i~~---------~-----------------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDS---------G-----------------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HhcCcHHHHHHHHHHHHh---------C-----------------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 389999999999888841 0 0135 689999999999999999998853
Q ss_pred C--------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 357 P--------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 357 ~--------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
. +++++..+ ..|. ..++++.+.....-......|+||||+|+|+..
T Consensus 64 ~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-----~~~V---d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~ 135 (824)
T PRK07764 64 VEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-----HGGV---DDARELRERAFFAPAESRYKIFIIDEAHMVTPQ 135 (824)
T ss_pred ccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-----cCCH---HHHHHHHHHHHhchhcCCceEEEEechhhcCHH
Confidence 1 22222211 1111 223333322222122346679999999999987
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.++.||+.||+
T Consensus 136 --------------a~NaLLK~LEE 146 (824)
T PRK07764 136 --------------GFNALLKIVEE 146 (824)
T ss_pred --------------HHHHHHHHHhC
Confidence 89999999994
No 112
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.26 E-value=8e-11 Score=131.49 Aligned_cols=149 Identities=19% Similarity=0.371 Sum_probs=98.0
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---C
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~ 355 (581)
++|++.+++.+.+.+.. + .....+|||.|++||||+++|++|.... +
T Consensus 214 iiG~S~~m~~~~~~i~~-~-----------------------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVRL-Y-----------------------------ARSDATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHHH-H-----------------------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 78999998888877741 1 1123689999999999999999998765 6
Q ss_pred CCeEEecccccccc----ccccchhhhHHHHHhh-hhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 356 VPFVIADATTLTQA----GYVGEDVESILYKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 356 ~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~-~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
.||+.++|..+.+. .+.|+. .+.+..... .....+..+.+++||||||+.|+.. +|..|+
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll 328 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYE-EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLL 328 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCc-ccccccccccccccchhhcCCceEEecChHhCCHH--------------HHHHHH
Confidence 79999999887531 122221 111100000 0112344567899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
++|+++.+.- .|. ... ...++++|++++ .++++.+.++.|..
T Consensus 329 ~~L~~~~~~r--~g~-----~~~---~~~dvRiIaat~-~~l~~~v~~g~fr~ 370 (526)
T TIGR02329 329 RVLEEREVVR--VGG-----TEP---VPVDVRVVAATH-CALTTAVQQGRFRR 370 (526)
T ss_pred HHHhcCcEEe--cCC-----Cce---eeecceEEeccC-CCHHHHhhhcchhH
Confidence 9999654431 111 111 123578888887 45666666665544
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=5.2e-11 Score=128.71 Aligned_cols=152 Identities=21% Similarity=0.314 Sum_probs=94.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+.+++.|..++...... .. ..... -+..+||+||+|+|||++|+++|+.+...
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~--~~-------------------~~~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD--VA-------------------AAGSG-MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc--cc-------------------ccCCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3899999999999999521100 00 00000 12568899999999999999999877432
Q ss_pred e-----------------------EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhc
Q 008014 358 F-----------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (581)
Q Consensus 358 f-----------------------v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~ 414 (581)
- ..+.... ..++ -..++++++.....-......|+||||+|++...
T Consensus 64 ~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---- 132 (394)
T PRK07940 64 DPDEPGCGECRACRTVLAGTHPDVRVVAPEG----LSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---- 132 (394)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEecccc----ccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----
Confidence 1 1111100 0111 1234555544432222345679999999999887
Q ss_pred ccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 415 ~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
.+++||+.||+. ....+.+++|++...+...++.|. ..+.|..|..+.
T Consensus 133 ----------aanaLLk~LEep--------------------~~~~~fIL~a~~~~~llpTIrSRc--~~i~f~~~~~~~ 180 (394)
T PRK07940 133 ----------AANALLKAVEEP--------------------PPRTVWLLCAPSPEDVLPTIRSRC--RHVALRTPSVEA 180 (394)
T ss_pred ----------HHHHHHHHhhcC--------------------CCCCeEEEEECChHHChHHHHhhC--eEEECCCCCHHH
Confidence 789999999931 011245556666556777777765 477888886654
No 114
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.25 E-value=4.3e-11 Score=133.24 Aligned_cols=199 Identities=19% Similarity=0.294 Sum_probs=116.6
Q ss_pred HHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHH
Q 008014 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (581)
Q Consensus 269 ~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAr 348 (581)
..+...+...|.|++.+|+.+..++..-.. .. . -++..+ ....||||+|+||||||++||
T Consensus 195 ~~l~~si~p~i~G~~~~k~~l~l~l~gg~~-------~~-------~-----~~~~~~-r~~~~vLL~G~pGtGKs~lar 254 (509)
T smart00350 195 ERLSRSLAPSIYGHEDIKKAILLLLFGGVH-------KN-------L-----PDGMKI-RGDINILLLGDPGTAKSQLLK 254 (509)
T ss_pred HHHHHhhCccccCcHHHHHHHHHHHhCCCc-------cc-------c-----CCCccc-cccceEEEeCCCChhHHHHHH
Confidence 345667777899999999888766631000 00 0 001111 123599999999999999999
Q ss_pred HHHHHhCCC-eEEe---ccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 349 TLARYVNVP-FVIA---DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 349 aLA~~l~~~-fv~i---~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
++++..... |+.. ++..+. +..........+....+.+..+++++++|||+|++.+.
T Consensus 255 ~l~~~~~r~~~~~~~~~~~~~l~-----~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~-------------- 315 (509)
T smart00350 255 YVEKTAPRAVYTTGKGSSAVGLT-----AAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS-------------- 315 (509)
T ss_pred HHHHHcCcceEcCCCCCCcCCcc-----ccceEccCcceEEecCccEEecCCCEEEEechhhCCHH--------------
Confidence 999987543 3221 121121 10000000000111112234467899999999999887
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHH
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~ 504 (581)
.|+.|+++||...+++...|... .. ..++.+|+|+|... ++++...
T Consensus 316 ~q~~L~e~me~~~i~i~k~G~~~-------~l-~~~~~viAa~NP~~-------g~y~~~~------------------- 361 (509)
T smart00350 316 DRTAIHEAMEQQTISIAKAGITT-------TL-NARCSVLAAANPIG-------GRYDPKL------------------- 361 (509)
T ss_pred HHHHHHHHHhcCEEEEEeCCEEE-------Ee-cCCcEEEEEeCCCC-------cccCCCc-------------------
Confidence 89999999998888775444322 12 24577788887432 2222210
Q ss_pred HHHHHHhhhcchhhhhcCCChhhhcccCeEEEcC-CCCHHHHHHHHhh
Q 008014 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLL-ALTENQLVQVLTE 551 (581)
Q Consensus 505 ~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~-~LsedeL~~Il~e 551 (581)
.+. .++.+.|.+++||+.+..+. ..+++.-.+|++.
T Consensus 362 ---~~~--------~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 362 ---TPE--------ENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred ---Chh--------hccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 011 12247889999998876554 4666655666653
No 115
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.24 E-value=8.4e-11 Score=134.01 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=95.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|.+.+++.+.+.+... .....+|||+|++||||+++|++|.+..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~------------------------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQA------------------------------AKSSFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHHHH------------------------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 3789999988887777410 0123689999999999999999998876
Q ss_pred CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.||+.++|..+.+ ..+.|+.... ........+..+.+++||||||+.|... +|..|+
T Consensus 376 ~~pfv~vnc~~~~~~~~~~elfg~~~~~----~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll 437 (638)
T PRK11388 376 AGPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALL 437 (638)
T ss_pred CCCeEEEECCCCChHHHHHHhcCCCCcC----ccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHH
Confidence 47999999988653 1122221000 0000011234467899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
++|+...+.- .+....+ .-++.+|++++ .++.+++..+.|..
T Consensus 438 ~~l~~~~~~~-------~~~~~~~---~~~~riI~~t~-~~l~~~~~~~~f~~ 479 (638)
T PRK11388 438 QVLKTGVITR-------LDSRRLI---PVDVRVIATTT-ADLAMLVEQNRFSR 479 (638)
T ss_pred HHHhcCcEEe-------CCCCceE---EeeEEEEEecc-CCHHHHHhcCCChH
Confidence 9999654431 0111111 22577888887 45666665555433
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=8.2e-11 Score=130.08 Aligned_cols=105 Identities=29% Similarity=0.336 Sum_probs=73.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
+|+||+.+++.|..++.. . + -+.++||+||+|+||||+|+.+|+.++
T Consensus 14 dliGQe~vv~~L~~a~~~---------~-r---------------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTL---------N-K---------------------IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 379999999998877741 0 0 125789999999999999999998663
Q ss_pred ----------------------CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 356 ----------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 356 ----------------------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
..++++++++- .|. ..++++.+........+...|++|||+|.+...
T Consensus 63 ~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~-----~~v---ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--- 131 (491)
T PRK14964 63 NGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN-----TSV---DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--- 131 (491)
T ss_pred CCCCCCCccccHHHHHHhccCCCCEEEEecccC-----CCH---HHHHHHHHHHHhccccCCceEEEEeChHhCCHH---
Confidence 23455555321 122 234444444332222356789999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 132 -----------A~NaLLK~LEe 142 (491)
T PRK14964 132 -----------AFNALLKTLEE 142 (491)
T ss_pred -----------HHHHHHHHHhC
Confidence 79999999993
No 117
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.23 E-value=4.5e-11 Score=136.35 Aligned_cols=136 Identities=26% Similarity=0.350 Sum_probs=89.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+||+.+|+.|..++.+. ..++|||.|++|||||++|++|+..+
T Consensus 5 ~ivGq~~~~~al~~~av~~--------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP--------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCC--------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 4899999998887555310 11689999999999999999999887
Q ss_pred --------------------------------CCCeEEeccccccccccccc-hhhhHHHH-HhhhhhhhHHhhccCeEE
Q 008014 355 --------------------------------NVPFVIADATTLTQAGYVGE-DVESILYK-LLTVSDYNVAAAQQGIVY 400 (581)
Q Consensus 355 --------------------------------~~~fv~i~~s~l~~~gyvGe-~~~~~l~~-lf~~a~~~l~~a~~~ILf 400 (581)
..||+.+.++... ..++|. ++...+.. ........+..+..+|||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 2466666554322 223442 21221210 011112334456789999
Q ss_pred ehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCC
Q 008014 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (581)
Q Consensus 401 IDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn 468 (581)
||||+++.+. +|+.|++.|+.+.+.+...|... . ...++++|++.|
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~-------~-~~~~~~lIat~n 177 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSV-------S-HPARFVLIGTMN 177 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCcee-------e-ecCCeEEEEecC
Confidence 9999999988 99999999997655543333221 1 235677788776
No 118
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=9.4e-11 Score=130.24 Aligned_cols=104 Identities=33% Similarity=0.425 Sum_probs=71.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+++||+.+++.|..++... + -...+||+||+||||||+|+++|+.++..
T Consensus 22 dliGq~~vv~~L~~ai~~~----------r---------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND----------R---------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC----------C---------------------CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4799999999998877410 0 12578999999999999999999988542
Q ss_pred ----------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhh
Q 008014 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 358 ----------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~ 409 (581)
++++++.+ -.| ...++++++.+......+...|++|||+|.+..
T Consensus 71 ~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas-----~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 71 ALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS-----KTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC-----CCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 12222111 111 223455554443322234677999999999987
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHh
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
. .+++|++.||
T Consensus 143 ~--------------a~naLLk~LE 153 (507)
T PRK06645 143 G--------------AFNALLKTLE 153 (507)
T ss_pred H--------------HHHHHHHHHh
Confidence 6 7999999999
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.22 E-value=2.4e-10 Score=118.64 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=69.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+++++.+...+.. . . .+..+||+||||+|||++|+++++.++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~---------~-~---------------------~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 22 ECILPAADKETFKSIVKK---------G-R---------------------IPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred HhcCcHHHHHHHHHHHhc---------C-C---------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 379999999998877741 0 0 11344469999999999999999999888
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
++.+++++ .. +. .+...+........ ....+.||+|||+|.+... ..++.|...|+
T Consensus 71 ~~~i~~~~-~~---~~-~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le 126 (316)
T PHA02544 71 VLFVNGSD-CR---ID-FVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFME 126 (316)
T ss_pred ceEeccCc-cc---HH-HHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHHHHHHHH
Confidence 98898876 21 11 00111211111111 1135789999999998332 16778888888
No 120
>PHA02244 ATPase-like protein
Probab=99.22 E-value=2.4e-10 Score=121.91 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=74.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccc--ccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT--LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~--l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
.+|||+||||||||++|+++|..++.+|+.++... +.-.+++... . .+.......+...+++|+||||+.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~--g----~~~dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN--G----KFHETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc--c----cccchHHHHHhhcCCEEEEeCcCcCC
Confidence 68999999999999999999999999999887531 0001122111 0 11111111123578999999999999
Q ss_pred hhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 409 ~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
++ ++..|+.++++..+..+ +.. .....++.+|+|+|.
T Consensus 194 p~--------------vq~~L~~lLd~r~l~l~--g~~--------i~~h~~FRlIATsN~ 230 (383)
T PHA02244 194 PE--------------ALIIINSAIANKFFDFA--DER--------VTAHEDFRVISAGNT 230 (383)
T ss_pred HH--------------HHHHHHHHhccCeEEec--CcE--------EecCCCEEEEEeeCC
Confidence 88 89999999997655542 111 223456788888875
No 121
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=8e-11 Score=133.31 Aligned_cols=105 Identities=29% Similarity=0.408 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|..++... + -...+||+||+|||||++|+++|+.++.
T Consensus 17 dviGQe~vv~~L~~~l~~~----------r---------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ----------R---------------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3789999999999888410 0 0134589999999999999999998853
Q ss_pred ----------------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 357 ----------------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
.++++++++ ..|. ..++++.+.....-......|++|||+|.|+
T Consensus 66 ~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-----~~~V---d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 66 GPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-----NRGV---DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT 137 (618)
T ss_pred CcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-----ccCH---HHHHHHHHHHHhCcccCCceEEEEEChhhCC
Confidence 122222211 1111 2344444433221122345799999999998
Q ss_pred hhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 409 ~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.. .+++||+.||+
T Consensus 138 ~~--------------a~NaLLKtLEE 150 (618)
T PRK14951 138 NT--------------AFNAMLKTLEE 150 (618)
T ss_pred HH--------------HHHHHHHhccc
Confidence 87 79999999993
No 122
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6.9e-11 Score=134.33 Aligned_cols=105 Identities=31% Similarity=0.431 Sum_probs=70.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|..++.. + + ....+||+||+|||||++|+++|+.++..
T Consensus 17 dIIGQe~vv~~L~~ai~~---------~-r---------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 17 DLVGQEHVVKALQNALDE---------G-R---------------------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHcCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 489999999999988841 0 0 11457999999999999999999987542
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
+++++.++ -.| ...+++++......-......|+||||+|.+...
T Consensus 66 ~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs-----~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--- 134 (709)
T PRK08691 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS-----NTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--- 134 (709)
T ss_pred CCCCCCCCcccHHHHHHhccCccceEEEeccc-----cCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH---
Confidence 11222111 111 1235555544332212245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------A~NALLKtLEE 145 (709)
T PRK08691 135 -----------AFNAMLKTLEE 145 (709)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999993
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1e-10 Score=131.82 Aligned_cols=104 Identities=34% Similarity=0.376 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+||+.+++.|...+.. . ...| +||+||+|||||++|+++|+.++.
T Consensus 14 eivGq~~i~~~L~~~i~~---------~-----------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDA---------G-----------------------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-----------------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 479999999999988841 0 0145 589999999999999999988753
Q ss_pred C--------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 357 P--------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 357 ~--------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
. +++++++. ..|. ..++++.+.....-......|++|||+|.|...
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-----~~gv---d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~ 133 (584)
T PRK14952 62 AQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-----HGGV---DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA 133 (584)
T ss_pred ccCCCCCcccccHHHHHhhcccCCCceEEEecccc-----ccCH---HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH
Confidence 1 22222211 1122 223333332222112245679999999999877
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 134 --------------A~NALLK~LEE 144 (584)
T PRK14952 134 --------------GFNALLKIVEE 144 (584)
T ss_pred --------------HHHHHHHHHhc
Confidence 89999999993
No 124
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=4.1e-11 Score=132.95 Aligned_cols=178 Identities=21% Similarity=0.304 Sum_probs=108.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
+|+||+.+++.+..++. ...+++|.||||||||++|+.++..+.
T Consensus 193 dv~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred HhcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 48999999887765552 226789999999999999999997551
Q ss_pred --------------------------CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhh
Q 008014 356 --------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 356 --------------------------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~ 409 (581)
.||....++... ...+|.. .......+..++++||||||++.+.+
T Consensus 239 ~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~-~~~~ggg--------~~~~pG~i~lA~~GvLfLDEi~e~~~ 309 (499)
T TIGR00368 239 TNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASK-PALVGGG--------PIPLPGEISLAHNGVLFLDELPEFKR 309 (499)
T ss_pred CCcEEEeccccccchhhhccccccccCCccccccccch-hhhhCCc--------cccchhhhhccCCCeEecCChhhCCH
Confidence 111111111100 0111110 00112245567889999999999988
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCC
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~ 489 (581)
. +|+.|++.||.+.+.+...+... . -..++.+|+++|.-. -+.++....+..
T Consensus 310 ~--------------~~~~L~~~LE~~~v~i~r~g~~~-------~-~pa~frlIaa~Npcp------cg~~~~~~~~c~ 361 (499)
T TIGR00368 310 S--------------VLDALREPIEDGSISISRASAKI-------F-YPARFQLVAAMNPCP------CGHYGGKNTHCR 361 (499)
T ss_pred H--------------HHHHHHHHHHcCcEEEEecCcce-------e-ccCCeEEEEecCCcc------cCcCCCCccccc
Confidence 7 99999999998877764433322 1 235678888887421 111111111110
Q ss_pred hhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHH
Q 008014 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQ 547 (581)
Q Consensus 490 P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~ 547 (581)
+.. .++.+... .+...+++||+..+.+.+++.+++.+
T Consensus 362 -----------c~~---~~~~~y~~-------~is~pllDR~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 362 -----------CSP---QQISRYWN-------KLSGPFLDRIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred -----------CCH---HHHHHHhh-------hccHhHHhhCCEEEEEcCCCHHHHhc
Confidence 111 11222222 27789999999999999988776643
No 125
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.1e-10 Score=123.68 Aligned_cols=222 Identities=16% Similarity=0.187 Sum_probs=140.9
Q ss_pred ccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 279 VIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
|+=..+.|+.|.+-+.... +..+.+.+++|. ++.||+||||||||+++-|+|++++.
T Consensus 203 laMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK---------------------RGYLLYGPPGTGKSS~IaAmAn~L~y 261 (457)
T KOG0743|consen 203 LAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK---------------------RGYLLYGPPGTGKSSFIAAMANYLNY 261 (457)
T ss_pred cccChhHHHHHHHHHHHHHhcchHHHhcCcchh---------------------ccceeeCCCCCCHHHHHHHHHhhcCC
Confidence 4555666666666665333 345666667773 89999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCC----CchhhHHHHHHHH
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD----VSGEGVQQALLKM 432 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d----~~~~~vq~aLL~l 432 (581)
.++.++.+++... .-++.++... ...+||+|.+||....-++....... ..+....+.||..
T Consensus 262 dIydLeLt~v~~n--------~dLr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNf 327 (457)
T KOG0743|consen 262 DIYDLELTEVKLD--------SDLRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNF 327 (457)
T ss_pred ceEEeeeccccCc--------HHHHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhh
Confidence 9999988876531 2266766554 36789999999998764443322111 1223478899999
Q ss_pred HhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHH-HHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHH
Q 008014 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT-ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (581)
Q Consensus 433 LEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~-l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~ 510 (581)
+||-.- -.....++|+|||..+ +|.+ +++||.|-+|.++...-+. .+.+.
T Consensus 328 iDGlwS-----------------scg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~-----------fK~La 379 (457)
T KOG0743|consen 328 LDGLWS-----------------SCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEA-----------FKTLA 379 (457)
T ss_pred hccccc-----------------cCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHH-----------HHHHH
Confidence 996211 0113467788999888 7765 4567999988887665443 33333
Q ss_pred hhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh---HHHHHHHHHHHHHhCC
Q 008014 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP---KNALGKQYRKMFQMNG 568 (581)
Q Consensus 511 ~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~---l~~l~~q~~k~~~~~g 568 (581)
.....-+ -.+.+..-|...+.=..++..++.+-+-.. ....++...+.++..+
T Consensus 380 ~nYL~~~-----~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743|consen 380 SNYLGIE-----EDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKK 435 (457)
T ss_pred HHhcCCC-----CCcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 3332210 034555555445555567777776644322 3444455555444443
No 126
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.3e-10 Score=129.91 Aligned_cols=105 Identities=31% Similarity=0.391 Sum_probs=69.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|...+.. . + ....+||+||+|||||++|+.+|+.+..
T Consensus 17 diiGq~~~v~~L~~~i~~---------~-r---------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 17 EVAGQQHALNSLVHALET---------Q-K---------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999998887741 0 0 0134789999999999999999998753
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++++++. ...|.+ .++++.+............|++|||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--- 134 (546)
T PRK14957 66 TGVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--- 134 (546)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH---
Confidence 22222221 112221 22333333222112345679999999999887
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.++.||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (546)
T PRK14957 135 -----------SFNALLKTLEE 145 (546)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.5e-10 Score=130.83 Aligned_cols=140 Identities=28% Similarity=0.327 Sum_probs=86.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|..++... + -...+||+||+|||||++|+++|+.+...
T Consensus 17 dIiGQe~v~~~L~~ai~~~----------r---------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN----------R---------------------VAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC----------C---------------------CCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3799999999998888410 0 01578899999999999999999988542
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++++++.. ..+.+..+.+.+.+... -......||||||+|.|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~---p~~g~~kVIIIDEad~Lt~~--- 134 (624)
T PRK14959 66 TAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYA---PMEGRYKVFIIDEAHMLTRE--- 134 (624)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhh---hhcCCceEEEEEChHhCCHH---
Confidence 23333211 11111112222222211 11245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC-cChHHHHHhhhcccCCCCCChhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF-VDIEKTISERRQDSSIGFGAPVR 492 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~-~~Le~~l~~rrfd~~IgF~~P~~ 492 (581)
.+++||+.||+. ..++++|++++. ..+...+..|.+ .+.|.....
T Consensus 135 -----------a~naLLk~LEEP---------------------~~~~ifILaTt~~~kll~TI~SRcq--~i~F~pLs~ 180 (624)
T PRK14959 135 -----------AFNALLKTLEEP---------------------PARVTFVLATTEPHKFPVTIVSRCQ--HFTFTRLSE 180 (624)
T ss_pred -----------HHHHHHHHhhcc---------------------CCCEEEEEecCChhhhhHHHHhhhh--ccccCCCCH
Confidence 799999999931 123445554443 335555555543 556665544
Q ss_pred h
Q 008014 493 A 493 (581)
Q Consensus 493 e 493 (581)
+
T Consensus 181 ~ 181 (624)
T PRK14959 181 A 181 (624)
T ss_pred H
Confidence 4
No 128
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.18 E-value=2.3e-10 Score=131.68 Aligned_cols=150 Identities=21% Similarity=0.339 Sum_probs=95.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++.+++.+.+.+.. . .....+|||.|++|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~~----~--------------------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEM----V--------------------------AQSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHHH----H--------------------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 478888888888777741 0 1123689999999999999999998765
Q ss_pred CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.+|+.++|..+.+ ..+.|.. ...+..........+..+.+++||||||+.+... +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHE-RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCcc-cccccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 57999999987642 1122221 0000000000111234467899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
.+|+...+... |. . . ....++.+|++++ .++++.+..+.|..
T Consensus 492 ~~l~~~~~~~~--g~-----~--~-~~~~~~RiI~~t~-~~l~~~~~~~~f~~ 533 (686)
T PRK15429 492 RVLQEQEFERL--GS-----N--K-IIQTDVRLIAATN-RDLKKMVADREFRS 533 (686)
T ss_pred HHHHhCCEEeC--CC-----C--C-cccceEEEEEeCC-CCHHHHHHcCcccH
Confidence 99995443211 11 0 1 1134678888886 45666665554433
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.18 E-value=2.2e-10 Score=130.33 Aligned_cols=117 Identities=33% Similarity=0.431 Sum_probs=77.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++||+.+++.+...+... .+.+++|+|||||||||+|+++++..
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3799999999776555210 12579999999999999999998665
Q ss_pred -------CCCeEEeccccccc------cccccchhhh---HHHHHhh------hhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 355 -------NVPFVIADATTLTQ------AGYVGEDVES---ILYKLLT------VSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~------~gyvGe~~~~---~l~~lf~------~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
+.+|+.++|..+.. ..+.|..... .....+. .....+..+.+++|||||++.|...
T Consensus 203 ~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-- 280 (615)
T TIGR02903 203 KHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-- 280 (615)
T ss_pred cCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--
Confidence 35789999876521 0112211000 0001110 0111234567899999999999887
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeee
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
.|+.|++.|+...+.+
T Consensus 281 ------------~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 281 ------------LQNKLLKVLEDKRVEF 296 (615)
T ss_pred ------------HHHHHHHHHhhCeEEe
Confidence 8999999999776654
No 130
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.18 E-value=4.7e-10 Score=125.35 Aligned_cols=150 Identities=17% Similarity=0.269 Sum_probs=95.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|.+.+++.+...+. +. +....+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~----~~--------------------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----KL--------------------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----HH--------------------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 47999998888777763 11 1123689999999999999999997665
Q ss_pred CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
+.||+.++|+.+.+. ...|... ..+..........+..+.+++||||||+.++.. +|..|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~~-~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHAP-GAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCCC-CCcCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 479999999886531 1111110 000000001112244567899999999999988 999999
Q ss_pred HHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 431 ~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
++++.+.+.- .+... ....++++||+++ .++++++.++.|..
T Consensus 320 ~~l~~~~~~~-------~g~~~---~~~~~vRiI~st~-~~l~~l~~~g~f~~ 361 (520)
T PRK10820 320 RFLNDGTFRR-------VGEDH---EVHVDVRVICATQ-KNLVELVQKGEFRE 361 (520)
T ss_pred HHHhcCCccc-------CCCCc---ceeeeeEEEEecC-CCHHHHHHcCCccH
Confidence 9998543211 01111 1134578888876 45667776655544
No 131
>PRK04195 replication factor C large subunit; Provisional
Probab=99.18 E-value=2.5e-10 Score=126.22 Aligned_cols=110 Identities=27% Similarity=0.417 Sum_probs=75.6
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCCe
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~f 358 (581)
|+|++.+++.|...+....+ + .+..++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~----g------------------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK----G------------------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 79999999999988852110 0 0136899999999999999999999999999
Q ss_pred EEeccccccccccccchhhhHHHHHhhhhhh--hHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 359 VIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 359 v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~--~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+++++.... ..+......+.. .+......||+|||+|.+....+ ...+++|++.++
T Consensus 68 ielnasd~r~~--------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----------~~~~~aL~~~l~ 127 (482)
T PRK04195 68 IELNASDQRTA--------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----------RGGARAILELIK 127 (482)
T ss_pred EEEcccccccH--------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----------hhHHHHHHHHHH
Confidence 99999875421 112222111110 01112467999999999875311 125788999888
No 132
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.7e-10 Score=128.95 Aligned_cols=105 Identities=30% Similarity=0.419 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|..++.. . + -...+||+||+|||||++|+++|+.++..
T Consensus 17 divGq~~v~~~L~~~i~~---------~-~---------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQ---------Q-R---------------------LHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999888841 0 0 01346899999999999999999988542
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++.++++. ..+ ...++++..............|++|||+|++...
T Consensus 66 ~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-----~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--- 134 (527)
T PRK14969 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-----NTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--- 134 (527)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceeEeeccc-----cCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---
Confidence 12222110 111 1234444443322222345679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (527)
T PRK14969 135 -----------AFNAMLKTLEE 145 (527)
T ss_pred -----------HHHHHHHHHhC
Confidence 79999999993
No 133
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4.8e-10 Score=124.78 Aligned_cols=103 Identities=30% Similarity=0.332 Sum_probs=67.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccE-EEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~V-LL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+||+.+++.|..++.. . ...|. ||+|||||||||+|+++|+.+..
T Consensus 15 dvvGq~~v~~~L~~~i~~---------~-----------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQ---------G-----------------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhcChHHHHHHHHHHHHc---------C-----------------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 389999999999988841 0 01344 89999999999999999988742
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++.+++++ ..+ ...++++..............||+|||+|.+...
T Consensus 63 ~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~--- 131 (504)
T PRK14963 63 SGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS--- 131 (504)
T ss_pred cCCCCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH---
Confidence 133333321 111 1223333222211111245679999999998765
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+++|++.|+
T Consensus 132 -----------a~naLLk~LE 141 (504)
T PRK14963 132 -----------AFNALLKTLE 141 (504)
T ss_pred -----------HHHHHHHHHH
Confidence 7999999999
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.8e-10 Score=128.58 Aligned_cols=105 Identities=29% Similarity=0.358 Sum_probs=70.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+.. . + -+..+||+||+|+|||++|+++|+.++..
T Consensus 17 ~iiGq~~v~~~L~~~i~~---------~-~---------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDT---------G-R---------------------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HccCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 489999999999988841 0 0 01346899999999999999999987532
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++++++.+ ..|. ..++++.+.....-......|++|||+|.++..
T Consensus 66 ~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----~~~v---~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--- 134 (576)
T PRK14965 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----NTGV---DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--- 134 (576)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----ccCH---HHHHHHHHHHHhccccCCceEEEEEChhhCCHH---
Confidence 22232211 1111 223444333322112245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------a~naLLk~LEe 145 (576)
T PRK14965 135 -----------AFNALLKTLEE 145 (576)
T ss_pred -----------HHHHHHHHHHc
Confidence 79999999993
No 135
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-10 Score=127.07 Aligned_cols=182 Identities=24% Similarity=0.386 Sum_probs=107.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
+|+||+.||+.+..+.. ...|+||+||||||||++|+.+...+-
T Consensus 180 DV~GQ~~AKrAleiAAA----------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 59999999999987773 237899999999999999999875551
Q ss_pred --CCeEEeccccccccccccchh----------------hhHHHHHh----hhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 356 --VPFVIADATTLTQAGYVGEDV----------------ESILYKLL----TVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 356 --~~fv~i~~s~l~~~gyvGe~~----------------~~~l~~lf----~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
...++++. +. .+.|... ......+. ......+..+++|||||||+-....+
T Consensus 226 s~~E~lE~s~--I~--s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~--- 298 (490)
T COG0606 226 SIPEALEVSA--IH--SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS--- 298 (490)
T ss_pred ChHHHHHHHH--Hh--hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH---
Confidence 00111110 00 0111000 00000111 11123456689999999998887665
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
+.+.|.+-||.+.+.|...+. .+.+ ..++.+|+++|.-- ...+..+.+.
T Consensus 299 -----------iLe~LR~PLE~g~i~IsRa~~-------~v~y-pa~Fqlv~AmNpcp------------cG~~~~~~~~ 347 (490)
T COG0606 299 -----------ILEALREPLENGKIIISRAGS-------KVTY-PARFQLVAAMNPCP------------CGNLGAPLRR 347 (490)
T ss_pred -----------HHHHHhCccccCcEEEEEcCC-------eeEE-eeeeEEhhhcCCCC------------ccCCCCCCCC
Confidence 999999999988777633332 2222 44566677766321 1122222211
Q ss_pred hhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHH
Q 008014 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (581)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~ 546 (581)
. .+.......+.+. ++-.|++|||..+....++..++.
T Consensus 348 ----C-~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~~ 385 (490)
T COG0606 348 ----C-PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGELI 385 (490)
T ss_pred ----c-CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHhh
Confidence 0 0112222333332 566899999999999999855554
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.9e-10 Score=127.87 Aligned_cols=194 Identities=21% Similarity=0.242 Sum_probs=136.5
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtL 346 (581)
+...-...||. |+|.++.++++.+.+.. + .+.|-+|+|+||+|||.+
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~R---------R-----------------------~KNNPvLiGEpGVGKTAI 207 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSR---------R-----------------------TKNNPVLVGEPGVGKTAI 207 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhc---------c-----------------------CCCCCeEecCCCCCHHHH
Confidence 44444556666 89999999999888841 1 236779999999999999
Q ss_pred HHHHHHHh----------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcc
Q 008014 347 AKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (581)
Q Consensus 347 AraLA~~l----------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~ 415 (581)
+..+|... +..++.++.+.+.. .+|.|+- +..+..++.... +..+.|||||||+.+-......+
T Consensus 208 vEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev~----~~~~vILFIDEiHtiVGAG~~~G 282 (786)
T COG0542 208 VEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEVE----KSKNVILFIDEIHTIVGAGATEG 282 (786)
T ss_pred HHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHHh----cCCCeEEEEechhhhcCCCcccc
Confidence 99999655 56678888888653 6788885 778877766543 34588999999999987622211
Q ss_pred cCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhh
Q 008014 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (581)
Q Consensus 416 ~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~ 495 (581)
+ .-.+-|-|..+|.-+ .+.+|.+|+
T Consensus 283 ---~--a~DAaNiLKPaLARG-----------------------eL~~IGATT--------------------------- 307 (786)
T COG0542 283 ---G--AMDAANLLKPALARG-----------------------ELRCIGATT--------------------------- 307 (786)
T ss_pred ---c--ccchhhhhHHHHhcC-----------------------CeEEEEecc---------------------------
Confidence 1 122667777777722 134455554
Q ss_pred hcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecc
Q 008014 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGK 575 (581)
Q Consensus 496 ~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~ 575 (581)
.+++++.+++ .+.+-.||+. |.++..+.++-..|+. .+.++|+. ++.+.++|
T Consensus 308 ----------~~EYRk~iEK--------D~AL~RRFQ~-V~V~EPs~e~ti~ILr----Glk~~yE~-----hH~V~i~D 359 (786)
T COG0542 308 ----------LDEYRKYIEK--------DAALERRFQK-VLVDEPSVEDTIAILR----GLKERYEA-----HHGVRITD 359 (786)
T ss_pred ----------HHHHHHHhhh--------chHHHhcCce-eeCCCCCHHHHHHHHH----HHHHHHHH-----ccCceecH
Confidence 3455566664 2556666654 7888999999999999 88888855 66678888
Q ss_pred cccccC
Q 008014 576 CFEINC 581 (581)
Q Consensus 576 ~~~~~~ 581 (581)
+|...|
T Consensus 360 ~Al~aA 365 (786)
T COG0542 360 EALVAA 365 (786)
T ss_pred HHHHHH
Confidence 876543
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=6.4e-10 Score=125.24 Aligned_cols=105 Identities=32% Similarity=0.405 Sum_probs=70.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|..++.. .+ ....+||+||+|||||++|+.+|+.++.
T Consensus 17 ~viGq~~v~~~L~~~i~~---------~~----------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQ---------GK----------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999888841 00 0134679999999999999999988742
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
+++++++++ ..| ...++++..........+...|++|||+|.|+..
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~~~---vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----NNG---VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----cCC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 223333321 111 1234444433322222345679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 135 -----------a~naLLKtLEe 145 (559)
T PRK05563 135 -----------AFNALLKTLEE 145 (559)
T ss_pred -----------HHHHHHHHhcC
Confidence 79999999993
No 138
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.10 E-value=1e-09 Score=114.28 Aligned_cols=110 Identities=26% Similarity=0.377 Sum_probs=70.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC---
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~--- 355 (581)
++|++++++.|..++.. . ..++++|+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~-----------~---------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDS-----------P---------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhC-----------C---------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 68999999998887741 0 014799999999999999999999873
Q ss_pred --CCeEEecccccccc--ccccch----------------hhhHHHHHhhhhhh-hHHhhccCeEEehhhhhhhhhhhhc
Q 008014 356 --VPFVIADATTLTQA--GYVGED----------------VESILYKLLTVSDY-NVAAAQQGIVYIDEVDKITKKAESL 414 (581)
Q Consensus 356 --~~fv~i~~s~l~~~--gyvGe~----------------~~~~l~~lf~~a~~-~l~~a~~~ILfIDEID~l~~~r~~~ 414 (581)
.+++.+++.++... .+.++. ....++.+...... ........+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 34677787664311 011000 01112221111100 000134579999999999765
Q ss_pred ccCCCCchhhHHHHHHHHHh
Q 008014 415 NISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 415 ~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.|+
T Consensus 141 ----------~~~~L~~~le 150 (337)
T PRK12402 141 ----------AQQALRRIME 150 (337)
T ss_pred ----------HHHHHHHHHH
Confidence 6888999998
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=7.7e-10 Score=126.74 Aligned_cols=112 Identities=25% Similarity=0.317 Sum_probs=70.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+.+++.|..++... + -...+||+||+|+|||++|+++|+.+...
T Consensus 19 dIiGQe~~v~~L~~aI~~~----------r---------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN----------K---------------------ISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC----------C---------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4899999999999888410 0 01346899999999999999999887442
Q ss_pred eEE---ecccccc-----ccccc---c---chhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 358 FVI---ADATTLT-----QAGYV---G---EDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 358 fv~---i~~s~l~-----~~gyv---G---e~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
-.. -.|.... ..+++ + .. ...++++.+............|++|||+|.|...
T Consensus 68 ~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~------------- 133 (725)
T PRK07133 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS------------- 133 (725)
T ss_pred ccCCCCCchhHHHHhhcCCCcEEEEeccccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------
Confidence 100 0110000 00110 0 00 1224454444332222356679999999999876
Q ss_pred hHHHHHHHHHhC
Q 008014 424 GVQQALLKMLEG 435 (581)
Q Consensus 424 ~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 134 -A~NALLKtLEE 144 (725)
T PRK07133 134 -AFNALLKTLEE 144 (725)
T ss_pred -HHHHHHHHhhc
Confidence 89999999993
No 140
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.10 E-value=7.8e-10 Score=116.29 Aligned_cols=104 Identities=32% Similarity=0.426 Sum_probs=68.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+++++.|...+.. ++ .+..+||+||||+|||++|+++++.+...
T Consensus 15 ~iig~~~~~~~l~~~~~~---------~~----------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKN---------GR----------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred hccCcHHHHHHHHHHHHc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999988841 00 11457899999999999999999887422
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++.+++.+ .. . ...++++++............||+|||+|.+...
T Consensus 64 ~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~~--~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--- 132 (355)
T TIGR02397 64 NGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----NN--G-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--- 132 (355)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----cC--C-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---
Confidence 12222210 00 1 1223444443322112245579999999999765
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.||
T Consensus 133 -----------~~~~Ll~~le 142 (355)
T TIGR02397 133 -----------AFNALLKTLE 142 (355)
T ss_pred -----------HHHHHHHHHh
Confidence 7899999998
No 141
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=7.6e-10 Score=124.61 Aligned_cols=141 Identities=30% Similarity=0.406 Sum_probs=86.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
.|+||+.+++.|..++.. . + .+..+||+||+|+|||++|+++|+.+..
T Consensus 17 dIIGQe~iv~~L~~aI~~---------~-r---------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 17 QIIGQELIKKILVNAILN---------N-K---------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 479999999999887741 0 0 0145889999999999999999998742
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++.++++. ..|. ..++++..............|++|||+|.|...
T Consensus 66 ~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--- 134 (605)
T PRK05896 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--- 134 (605)
T ss_pred CCCCCCCCcccHHHHHHHcCCCCceEEecccc-----ccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH---
Confidence 122222211 1121 223444333322112245679999999999866
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEE-ecCCCcChHHHHHhhhcccCCCCCChhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI-CGGAFVDIEKTISERRQDSSIGFGAPVR 492 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I-~tgn~~~Le~~l~~rrfd~~IgF~~P~~ 492 (581)
.+++||+.||+. ..++++| +++....+...++.|. ..+.|..+..
T Consensus 135 -----------A~NaLLKtLEEP---------------------p~~tvfIL~Tt~~~KLl~TI~SRc--q~ieF~~Ls~ 180 (605)
T PRK05896 135 -----------AWNALLKTLEEP---------------------PKHVVFIFATTEFQKIPLTIISRC--QRYNFKKLNN 180 (605)
T ss_pred -----------HHHHHHHHHHhC---------------------CCcEEEEEECCChHhhhHHHHhhh--hhcccCCCCH
Confidence 799999999931 1123334 4444444655555553 3567766655
Q ss_pred hh
Q 008014 493 AN 494 (581)
Q Consensus 493 e~ 494 (581)
+.
T Consensus 181 ~e 182 (605)
T PRK05896 181 SE 182 (605)
T ss_pred HH
Confidence 43
No 142
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.09 E-value=7.2e-10 Score=128.84 Aligned_cols=203 Identities=14% Similarity=0.183 Sum_probs=115.0
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
+...+...|.|.+.+|+.|.-++.. +..+....+.. + + .......-....||||+|+||||||++|+.+
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~g-------G~~k~~~~~~~-~-d--g~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFS-------GNKNSSDFNKS-P-D--ACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhc-------CCccccccccc-c-c--cccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 4455556789999999988766631 11000000000 0 0 0000011123469999999999999999999
Q ss_pred HHHhC-------CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 351 ARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 351 A~~l~-------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
++... .++..+.++.... +.... ...+....+.+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 98653 3444443332210 00000 000111112234567899999999999887
Q ss_pred hHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchH
Q 008014 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~ 503 (581)
.|.+|+++||..+++|...|... . -..++.+||++|... ++++....
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~-------t-L~ar~rVIAAaNP~~-------gryd~~~s----------------- 619 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVA-------T-LKAETAILASCNPIN-------SRYNKNKA----------------- 619 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcce-------e-cCCCeEEEEEcCCcc-------cccCcccC-----------------
Confidence 89999999998888775444322 1 234678888888532 33332110
Q ss_pred HHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCC-CCHHHHHHHHh
Q 008014 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLA-LTENQLVQVLT 550 (581)
Q Consensus 504 ~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~-LsedeL~~Il~ 550 (581)
+. .+..+.|.+++||+.+..+.+ .+++.=.+|..
T Consensus 620 -----~~--------eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 620 -----VI--------ENINISPSLFTRFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred -----cc--------cccCCChHHhhhhcEEEEecCCCChHHHHHHHH
Confidence 01 122488999999988875555 55443334443
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=1.5e-09 Score=119.41 Aligned_cols=104 Identities=28% Similarity=0.356 Sum_probs=68.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+.. + + -+..+||+||+|+|||++|+++|+.+...
T Consensus 18 diiGq~~~v~~L~~~i~~---------~-~---------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 18 EILGQDAVVAVLKNALRF---------N-R---------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 489999999998888841 0 0 01457899999999999999999887431
Q ss_pred -------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 358 -------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
++++++. ...|. ..++.+.+........+...|++|||+|.+...
T Consensus 67 ~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-----~~~gi---d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-- 136 (451)
T PRK06305 67 NPTEDQEPCNQCASCKEISSGTSLDVLEIDGA-----SHRGI---EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-- 136 (451)
T ss_pred CcccCCCCCcccHHHHHHhcCCCCceEEeecc-----ccCCH---HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--
Confidence 2222221 11121 122222222221112356789999999999876
Q ss_pred hcccCCCCchhhHHHHHHHHHh
Q 008014 413 SLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.||
T Consensus 137 ------------~~n~LLk~lE 146 (451)
T PRK06305 137 ------------AFNSLLKTLE 146 (451)
T ss_pred ------------HHHHHHHHhh
Confidence 7999999999
No 144
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=6.2e-10 Score=120.34 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=68.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+.+++.|...+.+. + -+..+||+||+|||||++|+++|+.+...
T Consensus 17 eiiGq~~~~~~L~~~~~~~----------~---------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG----------R---------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hccChHHHHHHHHHHHHhC----------C---------------------cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4899999999988877410 0 01348899999999999999999988542
Q ss_pred e-E---------Eeccccc------c---ccc---cccch-h-hhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 F-V---------IADATTL------T---QAG---YVGED-V-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 f-v---------~i~~s~l------~---~~g---yvGe~-~-~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
- . .-.|... . ... +.|.+ . ...++++.+........+...|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--- 142 (397)
T PRK14955 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--- 142 (397)
T ss_pred CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH---
Confidence 1 0 0011100 0 000 11110 0 1223333332211112245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.||
T Consensus 143 -----------~~~~LLk~LE 152 (397)
T PRK14955 143 -----------AFNAFLKTLE 152 (397)
T ss_pred -----------HHHHHHHHHh
Confidence 7899999999
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.3e-09 Score=123.94 Aligned_cols=112 Identities=24% Similarity=0.303 Sum_probs=72.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+++++.|..++... + -..++||+||+|+|||++|+++|+.+...
T Consensus 17 ~liGq~~i~~~L~~~l~~~----------r---------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 17 ELVGQEAIATTLKNALISN----------R---------------------IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hccChHHHHHHHHHHHHcC----------C---------------------CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4799999999998888410 0 01578999999999999999999988542
Q ss_pred eEE----eccc--------------cccccc-cccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCC
Q 008014 358 FVI----ADAT--------------TLTQAG-YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (581)
Q Consensus 358 fv~----i~~s--------------~l~~~g-yvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~ 418 (581)
... -.|. ++.... ..... ...++++...+...-......|++|||+|.|...
T Consensus 66 ~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-------- 136 (620)
T PRK14948 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-------- 136 (620)
T ss_pred CcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------
Confidence 100 0111 000000 00111 2345555544432222245679999999999876
Q ss_pred CCchhhHHHHHHHHHhC
Q 008014 419 DVSGEGVQQALLKMLEG 435 (581)
Q Consensus 419 d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 137 ------a~naLLK~LEe 147 (620)
T PRK14948 137 ------AFNALLKTLEE 147 (620)
T ss_pred ------HHHHHHHHHhc
Confidence 89999999993
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=3.4e-09 Score=112.93 Aligned_cols=109 Identities=29% Similarity=0.329 Sum_probs=68.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.+...+.+ .+ .+.++||+||||+|||++|+++++.+..+
T Consensus 18 ~iig~~~~~~~l~~~i~~---------~~----------------------~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 18 DVVGQSHITNTLLNAIEN---------NH----------------------LAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred hcCCcHHHHHHHHHHHHc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999998888841 00 12578899999999999999999987542
Q ss_pred eEEeccc-------cccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 358 FVIADAT-------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 358 fv~i~~s-------~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
.....+. ++......+ ...++.+++.+...-......||+|||+|.+... .++.|+
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll 129 (367)
T PRK14970 67 GYDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFL 129 (367)
T ss_pred CCCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHH
Confidence 2111110 011011111 1234444443221111234579999999999765 688999
Q ss_pred HHHh
Q 008014 431 KMLE 434 (581)
Q Consensus 431 ~lLE 434 (581)
+.|+
T Consensus 130 ~~le 133 (367)
T PRK14970 130 KTLE 133 (367)
T ss_pred HHHh
Confidence 9998
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.1e-09 Score=119.98 Aligned_cols=105 Identities=36% Similarity=0.433 Sum_probs=68.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.|...+.. . + -+..+||+||+|+|||++|+++|+.+..
T Consensus 15 eiiGqe~v~~~L~~~I~~---------g-r---------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 15 ELIGQESVSKTLSLALDN---------N-R---------------------LAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HccCcHHHHHHHHHHHHc---------C-C---------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 389999999999988841 0 0 0134589999999999999999988731
Q ss_pred -----------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 357 -----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
.++.+++++ ..| -..++++..........+...|++|||+|.+...
T Consensus 64 ~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--- 132 (535)
T PRK08451 64 QGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--- 132 (535)
T ss_pred CCCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 122222211 111 1234444332211111234579999999999877
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||.
T Consensus 133 -----------A~NALLK~LEE 143 (535)
T PRK08451 133 -----------AFNALLKTLEE 143 (535)
T ss_pred -----------HHHHHHHHHhh
Confidence 89999999993
No 148
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.03 E-value=9.4e-10 Score=124.61 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=77.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC--CCeEEeccccccccccccc-hhhhHHH-HHhhhhhhhHHhhccCeEEehhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGE-DVESILY-KLLTVSDYNVAAAQQGIVYIDEVDK 406 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~--~~fv~i~~s~l~~~gyvGe-~~~~~l~-~lf~~a~~~l~~a~~~ILfIDEID~ 406 (581)
++|||.|+||||||++|+++++.+. .+|++++... +.....|. ++...+. ..+......+.++++++||||||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV-TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 7999999999999999999999885 3699888632 22223332 1111111 0111112234457789999999999
Q ss_pred hhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 407 l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
+.+. +|+.|+++|+.+.+++...|... .. ..++.+|++.|.
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~~-------~~-p~~f~lIAt~np 136 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGISV-------VH-PAKFALIATYDP 136 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCce-------ee-cCceEEEEecCC
Confidence 9998 99999999998877764434321 11 345777887763
No 149
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.4e-09 Score=121.31 Aligned_cols=110 Identities=29% Similarity=0.337 Sum_probs=72.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+.. .+ .+..+||+||+|+|||++|+++|+.++..
T Consensus 25 dliGq~~~v~~L~~~~~~---------gr----------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFET---------GR----------------------IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhcCcHHHHHHHHHHHHc---------CC----------------------CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 489999999999888741 00 12468999999999999999999988543
Q ss_pred eEEec-------cc--------------cccc---cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 FVIAD-------AT--------------TLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 fv~i~-------~s--------------~l~~---~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
....+ |. ++.. .+..|. ..++++.+........+...|++|||+|.+...
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gv---d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--- 147 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGV---DDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--- 147 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCH---HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH---
Confidence 21111 10 0000 111221 234445444332222356789999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 148 -----------a~naLLKtLEe 158 (598)
T PRK09111 148 -----------AFNALLKTLEE 158 (598)
T ss_pred -----------HHHHHHHHHHh
Confidence 79999999993
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=2.2e-09 Score=120.98 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=68.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+.+ ++ -+..+||+||+|+|||++|+++|+.+...
T Consensus 17 diiGqe~iv~~L~~~i~~---------~~----------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 17 SLEGQDFVVETLKHSIES---------NK----------------------IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HccCcHHHHHHHHHHHHc---------CC----------------------CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 489999999999888841 00 01357899999999999999999988532
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++++++.. -.+ -..++++.+........+...|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--- 134 (563)
T PRK06647 66 NGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--- 134 (563)
T ss_pred cCCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH---
Confidence 12222111 001 1223333322222112356679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+++||+.||
T Consensus 135 -----------a~naLLK~LE 144 (563)
T PRK06647 135 -----------AFNALLKTIE 144 (563)
T ss_pred -----------HHHHHHHhhc
Confidence 7999999999
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.01 E-value=3.6e-09 Score=93.93 Aligned_cols=87 Identities=34% Similarity=0.599 Sum_probs=57.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++++||||||||++++.+++.+ +.+++.+++.+.... +......... .............+++|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVVAELFGHF--LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHHHHHhhhh--hHhHHHHhhccCCCeEEEEeChhhh
Confidence 689999999999999999999998 888888888765421 1111000000 0000011112346789999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
... .+..+++.++
T Consensus 97 ~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 97 SRG--------------AQNALLRVLE 109 (151)
T ss_pred hHH--------------HHHHHHHHHH
Confidence 554 5677888877
No 152
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=3.3e-09 Score=120.15 Aligned_cols=105 Identities=30% Similarity=0.362 Sum_probs=67.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+... + -...+||+||+|+|||++|+++|+.++..
T Consensus 17 eiiGq~~~~~~L~~~i~~~---------~----------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEG---------R----------------------VAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HhcCCHHHHHHHHHHHHhC---------C----------------------CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4899999999998877410 0 01346899999999999999999887531
Q ss_pred e-------------------------EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 358 F-------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 358 f-------------------------v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
. +.++.+ +..+. ..++++.+.....-......||+|||+|.|..+
T Consensus 66 ~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~v---d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-- 135 (585)
T PRK14950 66 TNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTSV---DDAREIIERVQFRPALARYKVYIIDEVHMLSTA-- 135 (585)
T ss_pred CCCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCCH---HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--
Confidence 1 111111 11111 123333222211111245679999999999876
Q ss_pred hcccCCCCchhhHHHHHHHHHhC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.++.||+.||+
T Consensus 136 ------------a~naLLk~LEe 146 (585)
T PRK14950 136 ------------AFNALLKTLEE 146 (585)
T ss_pred ------------HHHHHHHHHhc
Confidence 78999999993
No 153
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.00 E-value=1.5e-09 Score=115.49 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=47.1
Q ss_pred hhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 275 Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
++++|+|+++++.++.+.+.... .+.. ..+.-++|+|||||||||+|++|++.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a----~g~~----------------------~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA----QGLE----------------------ERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH----hcCC----------------------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34469999999999887774211 1100 122567899999999999999999998
Q ss_pred CC-------CeEEecc
Q 008014 355 NV-------PFVIADA 363 (581)
Q Consensus 355 ~~-------~fv~i~~ 363 (581)
+. +++.+.+
T Consensus 103 ~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 103 EEYSKTPEGRRYTFKW 118 (361)
T ss_pred hhhcccccCceEEEEe
Confidence 65 8888877
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.8e-09 Score=111.38 Aligned_cols=122 Identities=31% Similarity=0.359 Sum_probs=80.8
Q ss_pred cc-EEEECCCCCChHHHHHHHHHHhC------------------------CCeEEeccccccccccccchhhhHHHHHhh
Q 008014 331 SN-ILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLT 385 (581)
Q Consensus 331 ~~-VLL~GPPGTGKTtLAraLA~~l~------------------------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~ 385 (581)
.| +||+||||+|||++|.++|+.+. ..++++++++....+ +. ...++++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~---~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-II---VEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-ch---HHHHHHHHH
Confidence 45 89999999999999999999885 467778777654321 11 222333322
Q ss_pred hhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEe
Q 008014 386 VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFIC 465 (581)
Q Consensus 386 ~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~ 465 (581)
.....-......|++|||+|.|+.. .+++|++.||. ...+.+||+
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe---------------------p~~~~~~il 144 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE---------------------PPKNTRFIL 144 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc---------------------CCCCeEEEE
Confidence 2211111245679999999999987 89999999993 244566666
Q ss_pred cCCCcC-hHHHHHhhhcccCCCCCChhhh
Q 008014 466 GGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 466 tgn~~~-Le~~l~~rrfd~~IgF~~P~~e 493 (581)
.+|... +-..++.|.+ .+.|..|.+.
T Consensus 145 ~~n~~~~il~tI~SRc~--~i~f~~~~~~ 171 (325)
T COG0470 145 ITNDPSKILPTIRSRCQ--RIRFKPPSRL 171 (325)
T ss_pred EcCChhhccchhhhcce--eeecCCchHH
Confidence 666443 5556666643 5666554443
No 155
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.00 E-value=4.6e-09 Score=114.99 Aligned_cols=125 Identities=22% Similarity=0.380 Sum_probs=80.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 403 (581)
.++++.|++|||||++|+++.... +.+|+.++|+.+.+. ...|.. .+.+..........+..+.+++|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~-~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHE-KGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCC-CCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 689999999999999999998876 579999999886421 111111 000000000001123446789999999
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhc
Q 008014 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (581)
Q Consensus 404 ID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrf 481 (581)
|+.+... +|..|+++++.+.+.- .+ .... ...++.+|++++ .++++.+.++.|
T Consensus 241 i~~l~~~--------------~q~~L~~~l~~~~~~~--~~-----~~~~---~~~~~rii~~~~-~~l~~~~~~~~~ 293 (469)
T PRK10923 241 IGDMPLD--------------VQTRLLRVLADGQFYR--VG-----GYAP---VKVDVRIIAATH-QNLEQRVQEGKF 293 (469)
T ss_pred cccCCHH--------------HHHHHHHHHhcCcEEe--CC-----CCCe---EEeeEEEEEeCC-CCHHHHHHcCCc
Confidence 9999988 9999999999554321 01 1111 123688888886 356666655444
No 156
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.00 E-value=2.5e-09 Score=116.27 Aligned_cols=127 Identities=21% Similarity=0.420 Sum_probs=82.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 403 (581)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. .+.|.. ...+..........+..+.+++|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCCCccCCCCceeECCCCEEEEec
Confidence 689999999999999999998776 468999999886421 011110 000000000111223456789999999
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhccc
Q 008014 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (581)
Q Consensus 404 ID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~ 483 (581)
|+.+... +|..|+++++.+.+.. .+ ... -...++.+|++++ .++++.+.++.|..
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~~--~~-----~~~---~~~~~~rii~~~~-~~l~~~~~~~~~~~ 296 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIER--LG-----GRE---EIPVDVRIVCATN-QDLKRMIAEGTFRE 296 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEEe--CC-----CCc---eeeeceEEEEecC-CCHHHHHHcCCccH
Confidence 9999988 9999999999654321 01 111 1124678888886 45667766665544
No 157
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=3.7e-09 Score=117.30 Aligned_cols=141 Identities=31% Similarity=0.440 Sum_probs=84.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+.+++.|...+.. . + -...+||+||+|+|||++|+.+|+.++..
T Consensus 17 diiGq~~i~~~L~~~i~~---------~-~---------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKL---------Q-R---------------------VSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HccChHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 479999999999888841 0 0 01346799999999999999999987531
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++.++++. -.|.+ .++.+..........+...|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas-----~~gvd---~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--- 134 (486)
T PRK14953 66 NPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS-----NRGID---DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--- 134 (486)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc-----CCCHH---HHHHHHHHHHhCcccCCeeEEEEEChhhcCHH---
Confidence 11111110 11211 12333222222112245679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
.+++|++.|+.. + ...++++++++...+.+.+..|.. .+.|..+..+
T Consensus 135 -----------a~naLLk~LEep-------------p-------~~~v~Il~tt~~~kl~~tI~SRc~--~i~f~~ls~~ 181 (486)
T PRK14953 135 -----------AFNALLKTLEEP-------------P-------PRTIFILCTTEYDKIPPTILSRCQ--RFIFSKPTKE 181 (486)
T ss_pred -----------HHHHHHHHHhcC-------------C-------CCeEEEEEECCHHHHHHHHHHhce--EEEcCCCCHH
Confidence 789999999931 0 112444455544445555555543 5666665444
No 158
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.99 E-value=2.9e-09 Score=120.99 Aligned_cols=50 Identities=40% Similarity=0.572 Sum_probs=42.0
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|-+.|+||+++++.+..++. .+.+++|+||||||||++|+++++.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----------------------------------~~~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----------------------------------QKRNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----------------------------------cCCCEEEECCCCCCHHHHHHHHHHH
Confidence 555669999999999888874 1258999999999999999999988
Q ss_pred hCCC
Q 008014 354 VNVP 357 (581)
Q Consensus 354 l~~~ 357 (581)
++..
T Consensus 61 l~~~ 64 (608)
T TIGR00764 61 LPDE 64 (608)
T ss_pred cCch
Confidence 8543
No 159
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=4.9e-09 Score=119.19 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=69.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.|+||+.+++.|..++.+ . + -...+||+||+||||||+|+.+|+.+...
T Consensus 17 eivGQe~i~~~L~~~i~~---------~-r---------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 17 DITAQEHITHTIQNSLRM---------D-R---------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999998887741 0 0 01358899999999999999999988552
Q ss_pred eEE----------eccccc------c---ccc---cccchh--hhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 FVI----------ADATTL------T---QAG---YVGEDV--ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 fv~----------i~~s~l------~---~~g---yvGe~~--~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
-.. -.|... . ... +.|.+. ...++++.+.....-..+...|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--- 142 (620)
T PRK14954 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--- 142 (620)
T ss_pred CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH---
Confidence 100 011100 0 000 111110 1233343333221112345679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHhC
Q 008014 414 LNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++||+.||+
T Consensus 143 -----------a~naLLK~LEe 153 (620)
T PRK14954 143 -----------AFNAFLKTLEE 153 (620)
T ss_pred -----------HHHHHHHHHhC
Confidence 79999999993
No 160
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.98 E-value=1.7e-09 Score=120.20 Aligned_cols=164 Identities=16% Similarity=0.258 Sum_probs=95.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC--eEEeccccccc--------ccc-----c-cchhhhHHHHHhh----hhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ--------AGY-----V-GEDVESILYKLLT----VSDYN 390 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~~--------~gy-----v-Ge~~~~~l~~lf~----~a~~~ 390 (581)
.+++|.||||||||++++.++..+... -..+..+.+.. ..+ . +.. ......++. .....
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~pG~ 289 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGPGE 289 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehhhH
Confidence 578899999999999999999766211 01122221110 000 0 000 000001111 11234
Q ss_pred HHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCc
Q 008014 391 VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (581)
Q Consensus 391 l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~ 470 (581)
+..+++++|||||++.+.+. +|+.|++.||.+.++|...+... ....++.+|+|+|..
T Consensus 290 l~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~--------~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 290 ISLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKI--------TYPARFQLVAAMNPS 347 (506)
T ss_pred hhhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcce--------eccCCEEEEEeecCc
Confidence 66688999999999999877 99999999998888775444322 123567788888743
Q ss_pred ChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHH
Q 008014 471 DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (581)
Q Consensus 471 ~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~ 546 (581)
. -+. |+.+.+ .+.......++. .+...+++||+..+.+..++.+++.
T Consensus 348 p------cG~------~~~~~c-------~c~~~~~~~Y~~----------~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 348 P------TGH------YQGNHN-------RCTPEQTLRYLN----------RLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred c------cee------cCCCCC-------CcCHHHHHHHHh----------hCCHhHHhhccEEEEeCCCCHHHHh
Confidence 2 011 110000 011111222222 2678999999999999988766553
No 161
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.97 E-value=1.3e-08 Score=108.74 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=46.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|.++..+.|...+...... ..+.+++++||||||||++++.+++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~----------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRG----------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999998888421110 012578999999999999999999876
Q ss_pred --CCCeEEeccccc
Q 008014 355 --NVPFVIADATTL 366 (581)
Q Consensus 355 --~~~fv~i~~s~l 366 (581)
+..++.++|...
T Consensus 83 ~~~~~~v~in~~~~ 96 (394)
T PRK00411 83 AVKVVYVYINCQID 96 (394)
T ss_pred cCCcEEEEEECCcC
Confidence 466888888654
No 162
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.97 E-value=9.5e-09 Score=104.18 Aligned_cols=174 Identities=22% Similarity=0.322 Sum_probs=109.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|.++.|+.|.+-...+... .+..|+||+|+.|||||+++|++...+
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G----------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcC----------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3799999999887766432221 123799999999999999999998877
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
|..++++...++... .. +.+.+... ...=|||+|++. -+. ++.--..|-.+||
T Consensus 80 GLRlIev~k~~L~~l-------~~-l~~~l~~~------~~kFIlf~DDLs---Fe~----------~d~~yk~LKs~Le 132 (249)
T PF05673_consen 80 GLRLIEVSKEDLGDL-------PE-LLDLLRDR------PYKFILFCDDLS---FEE----------GDTEYKALKSVLE 132 (249)
T ss_pred CceEEEECHHHhccH-------HH-HHHHHhcC------CCCEEEEecCCC---CCC----------CcHHHHHHHHHhc
Confidence 667788877766521 12 22222221 134499999632 211 1124678899999
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
|+.- -...|+++.+|+|..- +.+...++.. +..+ .+
T Consensus 133 Ggle-----------------~~P~NvliyATSNRRHLv~E~~~d~~~--------~~~~------------------ei 169 (249)
T PF05673_consen 133 GGLE-----------------ARPDNVLIYATSNRRHLVPESFSDRED--------IQDD------------------EI 169 (249)
T ss_pred Cccc-----------------cCCCcEEEEEecchhhccchhhhhccC--------CCcc------------------cc
Confidence 7532 2356888888888655 2222222110 0000 11
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhh
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e 551 (581)
.+.|..+.. -.+.+||..++.|.+.+.++..+|++.
T Consensus 170 h~~d~~eEk--lSLsDRFGL~l~F~~~~q~~YL~IV~~ 205 (249)
T PF05673_consen 170 HPSDTIEEK--LSLSDRFGLWLSFYPPDQEEYLAIVRH 205 (249)
T ss_pred CcchHHHHH--HhHHHhCCcEEEecCCCHHHHHHHHHH
Confidence 111211111 256789999999999999999999993
No 163
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.97 E-value=5.9e-09 Score=110.17 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=46.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
.++|+++.++.|...+..... + ..+++++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999888852110 0 0126789999999999999999987652
Q ss_pred -------CCeEEecccccc
Q 008014 356 -------VPFVIADATTLT 367 (581)
Q Consensus 356 -------~~fv~i~~s~l~ 367 (581)
..++.++|....
T Consensus 68 ~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred hhccCCceEEEEEECCCCC
Confidence 457888886543
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.96 E-value=6.7e-09 Score=107.23 Aligned_cols=104 Identities=30% Similarity=0.440 Sum_probs=66.5
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC---
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~--- 355 (581)
++|++++++.|...+.. . ..++++|+||||||||++++++++.+.
T Consensus 19 ~~g~~~~~~~l~~~i~~-----------~---------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE-----------K---------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhC-----------C---------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 68999999998887741 0 114689999999999999999998873
Q ss_pred --CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 356 --VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 356 --~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
..++.+++++...... ....+........ .......+|+|||+|.+... .++.|++.+
T Consensus 67 ~~~~~i~~~~~~~~~~~~----~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T PRK00440 67 WRENFLELNASDERGIDV----IRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQALRRTM 126 (319)
T ss_pred cccceEEeccccccchHH----HHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHHHHHHH
Confidence 2345554443221000 0111111111110 11134569999999999765 678899999
Q ss_pred h
Q 008014 434 E 434 (581)
Q Consensus 434 E 434 (581)
+
T Consensus 127 e 127 (319)
T PRK00440 127 E 127 (319)
T ss_pred h
Confidence 8
No 165
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=6.7e-09 Score=118.18 Aligned_cols=105 Identities=29% Similarity=0.337 Sum_probs=69.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|...+.. . + -+..+||+||+|+|||++|+++|+.+...
T Consensus 18 ~viGq~~~~~~L~~~i~~---------~-~---------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIAT---------N-K---------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHc---------C-C---------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999888841 0 0 01347899999999999999999987521
Q ss_pred -------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 358 -------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
++.+++.+ ..+ ...++.+...+......+...|++|||+|.+...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-----~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAAS-----NNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 22222211 001 1223444333221112245679999999999876
Q ss_pred hcccCCCCchhhHHHHHHHHHhC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++|++.||.
T Consensus 137 ------------a~naLLK~LEe 147 (614)
T PRK14971 137 ------------AFNAFLKTLEE 147 (614)
T ss_pred ------------HHHHHHHHHhC
Confidence 79999999993
No 166
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.2e-09 Score=117.69 Aligned_cols=134 Identities=31% Similarity=0.392 Sum_probs=88.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+||+.+++.|..++.+ .++ ....||.||-|||||++||.+|+.++..
T Consensus 17 evvGQe~v~~~L~nal~~--~ri-----------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 17 DVVGQEHVVKTLSNALEN--GRI-----------------------------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhcccHHHHHHHHHHHHh--Ccc-----------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 479999999999999952 111 1467899999999999999999988542
Q ss_pred -------eE------Eeccc---cccc---cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCC
Q 008014 358 -------FV------IADAT---TLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (581)
Q Consensus 358 -------fv------~i~~s---~l~~---~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~ 418 (581)
+. .++.. |+.+ ..-.|. ..++++.+...+........|.+|||++.++..
T Consensus 66 ~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gV---ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGV---DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred CCCCCCcchhhhhhHhhhcCCcccchhhhhhhccCh---HHHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 10 00000 1111 111121 234555555554445577889999999999988
Q ss_pred CCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhh
Q 008014 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERR 480 (581)
Q Consensus 419 d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rr 480 (581)
..++||+.||+ ...++.||++|.... +...+..|.
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe~~Kip~TIlSRc 170 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTEPQKIPNTILSRC 170 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCCcCcCchhhhhcc
Confidence 89999999994 234566666665444 555555553
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.94 E-value=1.2e-08 Score=100.43 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=53.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|||||++|+++++.+ +.+++.+++.++... ....+... ....+|+|||++.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 689999999999999999999876 467788888765421 01111111 23469999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... .++.|..+++
T Consensus 103 ~~~~~------------~~~~L~~~l~ 117 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYN 117 (226)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 75411 3667777776
No 168
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.94 E-value=3.1e-09 Score=111.77 Aligned_cols=130 Identities=21% Similarity=0.373 Sum_probs=93.5
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
..++|+.|++||||.++||+..... ..||+.++|+.+-+ +...|..++ -+.....+..+.++.||+|
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg------~~gk~GffE~AngGTVlLD 300 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG------DEGKKGFFEQANGGTVLLD 300 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC------CCCccchhhhccCCeEEee
Confidence 3789999999999999999886554 68999999998653 222232211 0011123455788999999
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcc
Q 008014 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd 482 (581)
||..+++. .|..||+.|.++++.- -+....+-+ ++++||+|. .++.+.+..|.|.
T Consensus 301 eIgEmSp~--------------lQaKLLRFL~DGtFRR-------VGee~Ev~v---dVRVIcatq-~nL~~lv~~g~fR 355 (511)
T COG3283 301 EIGEMSPR--------------LQAKLLRFLNDGTFRR-------VGEDHEVHV---DVRVICATQ-VNLVELVQKGKFR 355 (511)
T ss_pred hhhhcCHH--------------HHHHHHHHhcCCceee-------cCCcceEEE---EEEEEeccc-ccHHHHHhcCchH
Confidence 99999998 9999999999665431 112222233 589999986 6799999999998
Q ss_pred cCCCCCCh
Q 008014 483 SSIGFGAP 490 (581)
Q Consensus 483 ~~IgF~~P 490 (581)
..+.+...
T Consensus 356 eDLfyRLN 363 (511)
T COG3283 356 EDLFYRLN 363 (511)
T ss_pred HHHHHHhh
Confidence 88777643
No 169
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.93 E-value=6e-09 Score=113.70 Aligned_cols=126 Identities=20% Similarity=0.342 Sum_probs=80.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 403 (581)
.++++.|++||||+++|+++.+.. +.+|+.++|..+.+. ...|.. ...+..........+..+.+++|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 578999999999999999998775 569999999886421 111211 000000001111123346689999999
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcc
Q 008014 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (581)
Q Consensus 404 ID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd 482 (581)
|+.+... +|..|+++|+.+.+.. .+ ... ....++.+|++++ .++++.+..+.|.
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~~--~~-----~~~---~~~~~~rii~~~~-~~l~~~~~~~~f~ 290 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFYR--VG-----GRT---PIKVDVRIVAATH-QNLEALVRQGKFR 290 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEE--CC-----CCc---eeeeeeEEEEeCC-CCHHHHHHcCCcH
Confidence 9999988 8999999999554321 01 001 1123577888876 4566666655543
No 170
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.93 E-value=5.3e-09 Score=113.79 Aligned_cols=131 Identities=20% Similarity=0.348 Sum_probs=84.8
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
..++++.|++||||+++|+++.... +.+|+.++|..+.+. .+.|.. ...+..........+..+.+++||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE-KGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC-CCCCCCCCCCCCCceEECCCCEEEEe
Confidence 3689999999999999999998765 579999999886531 111111 00000000001112344678999999
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcc
Q 008014 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd 482 (581)
||+.+... +|..|+.+++...+... + ... . ...++.+|++++ .++++++.++.|.
T Consensus 245 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~--~-----~~~--~-~~~~~rii~~t~-~~l~~~~~~g~~~ 299 (457)
T PRK11361 245 EIGEMPLV--------------LQAKLLRILQEREFERI--G-----GHQ--T-IKVDIRIIAATN-RDLQAMVKEGTFR 299 (457)
T ss_pred chhhCCHH--------------HHHHHHHHHhcCcEEeC--C-----CCc--e-eeeceEEEEeCC-CCHHHHHHcCCch
Confidence 99999988 89999999996543210 1 111 1 134678888887 4677777777765
Q ss_pred cCCC
Q 008014 483 SSIG 486 (581)
Q Consensus 483 ~~Ig 486 (581)
..+.
T Consensus 300 ~~l~ 303 (457)
T PRK11361 300 EDLF 303 (457)
T ss_pred HHHH
Confidence 5444
No 171
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.90 E-value=6.1e-10 Score=102.73 Aligned_cols=91 Identities=33% Similarity=0.648 Sum_probs=64.8
Q ss_pred cChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC---C
Q 008014 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN---V 356 (581)
Q Consensus 280 vGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~---~ 356 (581)
||...+++.+...+. ++ .-...+|+|+|++||||+++|++|..... .
T Consensus 1 vG~S~~~~~l~~~l~----~~--------------------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~ 50 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLE----RL--------------------------AKSSSPVLITGEPGTGKSLLARALHRYSGRANG 50 (138)
T ss_dssp --SCHHHHHHHHHHH----HH--------------------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS
T ss_pred CCCCHHHHHHHHHHH----HH--------------------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC
Confidence 577888888887774 11 01237899999999999999999998774 3
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+|+.++|.... .++++ .+.+++|||+|||.+... .|..|+..|+
T Consensus 51 ~~~~~~~~~~~-------------~~~l~-------~a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 51 PFIVIDCASLP-------------AELLE-------QAKGGTLYLKNIDRLSPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -CCCCCHHCTC-------------HHHHH-------HCTTSEEEEECGCCS-HH--------------HHHHHHHHHH
T ss_pred CeEEechhhCc-------------HHHHH-------HcCCCEEEECChHHCCHH--------------HHHHHHHHHH
Confidence 66666665432 12222 247899999999999988 8999999998
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.89 E-value=3.7e-08 Score=107.70 Aligned_cols=133 Identities=23% Similarity=0.349 Sum_probs=75.0
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCC--CeEEeccccccc--------ccc----ccchh-hhHHHHHhhhhhhhHHhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ--------AGY----VGEDV-ESILYKLLTVSDYNVAAA 394 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~--------~gy----vGe~~-~~~l~~lf~~a~~~l~~a 394 (581)
+++++|+||||||||++|+.+|..+.. .+..+.+..+.+ .|+ +|... ...+.+....+.. ...
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~--~p~ 271 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKE--QPE 271 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHh--ccc
Confidence 379999999999999999999988743 122222211110 112 22111 1223333333321 113
Q ss_pred ccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc----eeeecCCCcccCCCCCceeeccCcEEEEecCCCc
Q 008014 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (581)
Q Consensus 395 ~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~----~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~ 470 (581)
.+.+||||||++...++ +...|+.+||.. ...+|-. .............|+.+|+|.|..
T Consensus 272 ~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~---y~e~d~e~f~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 272 KKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLT---YSENDEERFYVPENVYIIGLMNTA 335 (459)
T ss_pred CCcEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeee---ccccccccccCCCCeEEEEecCcc
Confidence 57899999999998652 677788888821 1111100 000000112335899999999988
Q ss_pred C-----hHHHHHhhhc
Q 008014 471 D-----IEKTISERRQ 481 (581)
Q Consensus 471 ~-----Le~~l~~rrf 481 (581)
+ ++.++ +|||
T Consensus 336 Drs~~~lD~Al-rRRF 350 (459)
T PRK11331 336 DRSLAVVDYAL-RRRF 350 (459)
T ss_pred ccchhhccHHH-Hhhh
Confidence 8 44444 4555
No 173
>PRK15115 response regulator GlrR; Provisional
Probab=98.88 E-value=1.6e-08 Score=109.97 Aligned_cols=125 Identities=21% Similarity=0.361 Sum_probs=86.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhh-----------hhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~-----------a~~~l~~a~~ 396 (581)
.++++.|++|||||++|+++.+.. +.+|+.++|..+.+. +. -..+|.. ....+..+.+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~-~~-------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ-LL-------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH-HH-------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 579999999999999999998875 579999999876431 11 0111211 1112344678
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l 476 (581)
++||||||+.+... +|..|++.|+.+.+.- .|. .. ....++++|++++. ++++.+
T Consensus 230 gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~--~g~-----~~---~~~~~~rii~~~~~-~l~~~~ 284 (444)
T PRK15115 230 GTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRP--LGS-----NR---DIDIDVRIISATHR-DLPKAM 284 (444)
T ss_pred CEEEEEccccCCHH--------------HHHHHHHHHhhCCEEe--CCC-----Cc---eeeeeEEEEEeCCC-CHHHHH
Confidence 99999999999988 8999999999544321 011 01 11236888888874 588888
Q ss_pred HhhhcccCCCCC
Q 008014 477 SERRQDSSIGFG 488 (581)
Q Consensus 477 ~~rrfd~~IgF~ 488 (581)
.++.|...+.|.
T Consensus 285 ~~~~f~~~l~~~ 296 (444)
T PRK15115 285 ARGEFREDLYYR 296 (444)
T ss_pred HcCCccHHHHHh
Confidence 888776655543
No 174
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.87 E-value=6.4e-09 Score=118.39 Aligned_cols=205 Identities=18% Similarity=0.229 Sum_probs=116.5
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
+...+-..|.|.+.+|+.+.-++.--.+.... +-.--...-||||+|.||||||.|.|.+
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~--------------------~g~~iRGDInILLvGDPgtaKSqlLk~v 339 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNLP--------------------DGTRIRGDIHILLVGDPGTAKSQLLKYV 339 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccCC--------------------CCcccccceeEEEcCCCchhHHHHHHHH
Confidence 34444566889999999887666311111000 0001122369999999999999999999
Q ss_pred HHHhCCCeEEeccccccccccccchhhhHH-HHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 351 ARYVNVPFVIADATTLTQAGYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 351 A~~l~~~fv~i~~s~l~~~gyvGe~~~~~l-~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
++.+-..++ .++..-...|....-..... .++.-.+ +.+-.+++||+.|||+|+|... .+.+|
T Consensus 340 ~~~aPr~vy-tsgkgss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm~~~--------------dr~ai 403 (682)
T COG1241 340 AKLAPRGVY-TSGKGSSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKMNEE--------------DRVAI 403 (682)
T ss_pred HhhCCceEE-EccccccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCCChH--------------HHHHH
Confidence 988744332 22211111111100000000 0111111 2233478999999999999877 79999
Q ss_pred HHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHH
Q 008014 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (581)
Q Consensus 430 L~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l 509 (581)
++.||..+++|...|-. ..-....-++||.|... ||++... + +
T Consensus 404 hEaMEQQtIsIaKAGI~--------atLnARcsvLAAaNP~~-------Gryd~~~----~------------------~ 446 (682)
T COG1241 404 HEAMEQQTISIAKAGIT--------ATLNARCSVLAAANPKF-------GRYDPKK----T------------------V 446 (682)
T ss_pred HHHHHhcEeeeccccee--------eecchhhhhhhhhCCCC-------CcCCCCC----C------------------H
Confidence 99999999988544421 12223355667776432 3333221 1 1
Q ss_pred HhhhcchhhhhcCCChhhhcccCeEEEcCC-CCHHHHHHHHhhhHHHH
Q 008014 510 METVESSDLIAYGLIPEFVGRFPVLVSLLA-LTENQLVQVLTEPKNAL 556 (581)
Q Consensus 510 ~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~-LsedeL~~Il~e~l~~l 556 (581)
.+ +..+.+.+++|||.++.+.+ .+++.-.+|.+..+...
T Consensus 447 ~e--------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 447 AE--------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred HH--------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 11 22478899999999987766 44444445555444443
No 175
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.4e-08 Score=105.52 Aligned_cols=48 Identities=33% Similarity=0.423 Sum_probs=38.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
.|+||+++++.+..++.. . + -+..+||+||+|+|||++|+.+|+.+..
T Consensus 24 ~l~Gh~~a~~~L~~a~~~---------g-r---------------------l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYRE---------G-K---------------------LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hccCcHHHHHHHHHHHHc---------C-C---------------------CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 489999999999988841 0 0 0135889999999999999999988843
No 176
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.86 E-value=1.4e-08 Score=109.17 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=71.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc----cccc----------------------------------ccc-c
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA----TTLT----------------------------------QAG-Y 371 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~----s~l~----------------------------------~~g-y 371 (581)
+++|+.|+.||||||++|+|+..+..--+...| .-.. ..+ .
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 799999999999999999999888321111122 0000 001 2
Q ss_pred ccc-hhhhHHHHHhh-hhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCC
Q 008014 372 VGE-DVESILYKLLT-VSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (581)
Q Consensus 372 vGe-~~~~~l~~lf~-~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~ 449 (581)
+|. ++.+.+..-.. -....+..++.+||++||++.|... +|+.||..++++.-.|-..|...
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi-- 182 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISI-- 182 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceee--
Confidence 221 11222221100 1123567789999999999999988 99999999997533332233221
Q ss_pred CCCceeeccCcEEEEecCCC
Q 008014 450 RGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 450 ~~~~ivI~tsnii~I~tgn~ 469 (581)
-.-.++++|+|.|.
T Consensus 183 ------~hpa~fvligTmNP 196 (423)
T COG1239 183 ------RHPARFLLIGTMNP 196 (423)
T ss_pred ------ccCccEEEEeecCc
Confidence 11345778888874
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.84 E-value=3.2e-08 Score=95.67 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=53.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC------------------------eEEeccccccccccccchhhhHHHHHhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~ 386 (581)
..+||+||+|+|||++|+.+++.+... +..+.... +..+ ...++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHHHH
Confidence 458899999999999999999887321 11111100 0111 1233333333
Q ss_pred hhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 387 a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
...........|++|||+|++... .++.||+.||
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le 121 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLE 121 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhc
Confidence 222112245679999999999877 7999999999
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.84 E-value=1.3e-08 Score=89.18 Aligned_cols=76 Identities=28% Similarity=0.437 Sum_probs=51.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC---eEEecccccccccc------------ccchhhhHHHHHhhhhhhhHHhhc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGY------------VGEDVESILYKLLTVSDYNVAAAQ 395 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~---fv~i~~s~l~~~gy------------vGe~~~~~l~~lf~~a~~~l~~a~ 395 (581)
.+++|+||||||||++++.+|..+... ++.+++........ ............++.++ ...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH----hcC
Confidence 678999999999999999999999765 78787775432110 00111223333333332 123
Q ss_pred cCeEEehhhhhhhhh
Q 008014 396 QGIVYIDEVDKITKK 410 (581)
Q Consensus 396 ~~ILfIDEID~l~~~ 410 (581)
+.+|+|||++++...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 599999999999876
No 179
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.84 E-value=3.6e-08 Score=99.31 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=39.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC---CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~---~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|||||+|++++++.+. .....++..+... ...+..+.. ..-.+|+||||+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~~~~~~~~------~~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FVPEVLEGM------EQLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hhHHHHHHh------hhCCEEEEeChhhh
Confidence 5789999999999999999998763 2233333322110 011111111 12358999999998
Q ss_pred hhh
Q 008014 408 TKK 410 (581)
Q Consensus 408 ~~~ 410 (581)
..+
T Consensus 110 ~~~ 112 (235)
T PRK08084 110 AGD 112 (235)
T ss_pred cCC
Confidence 654
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.84 E-value=4.2e-08 Score=110.73 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=106.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCC---cccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD---TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v---~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+++|-+.+-+.+...+....+-.+.....++.+.. ++...++++.. .-..+++-+||+||||.||||||+.+|+.+
T Consensus 272 dLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~-~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 272 DLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASK-GPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred HHhcchhHHHHHHHHHHhhcHHhhcchHhhhcccc-ccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhc
Confidence 35677777777766665333334442222221111 11111111111 111233455699999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
|..+++++++|-.... .+...+..+.+.....-+..+|..|+|||||-.... ..+.|+.++.
T Consensus 351 GYsVvEINASDeRt~~----~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~ 412 (877)
T KOG1969|consen 351 GYSVVEINASDERTAP----MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVK 412 (877)
T ss_pred CceEEEecccccccHH----HHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHH
Confidence 9999999999866422 223333333333322112357889999999998765 7888888888
Q ss_pred --CceeeecCCC---cccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 435 --GTVVNVPEKG---ARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 435 --g~~v~ipe~g---~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
+...+-+..+ .++..+. ..-+..|+.||.--+.. .+-.-|-+...|.|..|....
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~---~~L~RPIICICNdLYaP--aLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRS---KLLTRPIICICNDLYAP--ALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred hhcchhhcCcccchhhhhhhcc---ccccCCEEEEecCccch--hhhhcccceEEEEecCCChhH
Confidence 3222222221 1111111 22355566666432222 112223456677887776543
No 181
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=5.1e-08 Score=102.81 Aligned_cols=62 Identities=37% Similarity=0.585 Sum_probs=48.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
-+|||.+|.+..-..+. .+..+. ...++||+.||||||||.||-++|+++|
T Consensus 40 G~VGQ~~AReAaGvIv~----mik~gk-----------------------~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 40 GLVGQEEAREAAGVIVK----MIKQGK-----------------------MAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred cccchHHHHHhhhHHHH----HHHhCc-----------------------ccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 37999999998776663 221111 1237999999999999999999999995
Q ss_pred CCeEEeccccc
Q 008014 356 VPFVIADATTL 366 (581)
Q Consensus 356 ~~fv~i~~s~l 366 (581)
.||+.++++++
T Consensus 93 vPF~~isgsEi 103 (450)
T COG1224 93 VPFVAISGSEI 103 (450)
T ss_pred CCceeecccee
Confidence 79999999885
No 182
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=4.4e-08 Score=105.13 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=37.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.|+||+.+++.|..++.. . + -+..+||+||+|+||+++|.++|+.+
T Consensus 20 ~iiGq~~~~~~L~~~~~~---------~-r---------------------l~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRS---------G-R---------------------LHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hccChHHHHHHHHHHHHc---------C-C---------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999988841 0 0 01348899999999999999999887
No 183
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.83 E-value=4.3e-08 Score=113.23 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=70.3
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccE-EEECCCCCChHHHHHHHHHHh-
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~V-LL~GPPGTGKTtLAraLA~~l- 354 (581)
+.++|.++.++.|...|...... ..+.++ +++|+||||||++++.+.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999888521110 012455 599999999999999998766
Q ss_pred ------C---CCeEEeccccccccc---------c------ccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 355 ------N---VPFVIADATTLTQAG---------Y------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 355 ------~---~~fv~i~~s~l~~~g---------y------vGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
+ ..++.++|..+.... + .|......+..+|..... ......||+|||||.|...
T Consensus 807 eeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 807 HKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc
Confidence 1 456889996544210 0 011111222333322110 0112458999999999865
Q ss_pred hhhcccCCCCchhhHHHHHHHHHh
Q 008014 411 AESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.|..|+.+++
T Consensus 885 --------------~QDVLYnLFR 894 (1164)
T PTZ00112 885 --------------TQKVLFTLFD 894 (1164)
T ss_pred --------------HHHHHHHHHH
Confidence 4667888877
No 184
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.82 E-value=5.5e-09 Score=116.58 Aligned_cols=137 Identities=22% Similarity=0.361 Sum_probs=101.2
Q ss_pred ccCccEEEECCCCCChHHHHHHHHHHh--CCCeEEeccccccc----cccccchhhhHHHHHhhh-hhhhHHhhccCeEE
Q 008014 328 LEKSNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLTQ----AGYVGEDVESILYKLLTV-SDYNVAAAQQGIVY 400 (581)
Q Consensus 328 v~~~~VLL~GPPGTGKTtLAraLA~~l--~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~-a~~~l~~a~~~ILf 400 (581)
....++++.|+|||||-.+||++.... ..||+.++|..+.+ +.++|+. ...++..+.+ ....+..+.++.+|
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~-~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV-AGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC-ccccccchhccccccceecCCCccH
Confidence 345789999999999999999997555 67999999998653 3344443 2222222211 22356678899999
Q ss_pred ehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh
Q 008014 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (581)
Q Consensus 401 IDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr 480 (581)
+|||..|.-. +|+.||++|+++.|+- =.| .. +.+| |.+|+||+ .++..++..++
T Consensus 413 ldeIgd~p~~--------------~Qs~LLrVl~e~~v~p-~g~------~~-~~vd---irvi~ath-~dl~~lv~~g~ 466 (606)
T COG3284 413 LDEIGDMPLA--------------LQSRLLRVLQEGVVTP-LGG------TR-IKVD---IRVIAATH-RDLAQLVEQGR 466 (606)
T ss_pred HHHhhhchHH--------------HHHHHHHHHhhCceec-cCC------cc-eeEE---EEEEeccC-cCHHHHHHcCC
Confidence 9999999988 9999999999776652 112 11 3454 88899887 68999999999
Q ss_pred cccCCCCCChh
Q 008014 481 QDSSIGFGAPV 491 (581)
Q Consensus 481 fd~~IgF~~P~ 491 (581)
|.+.++|....
T Consensus 467 fredLyyrL~~ 477 (606)
T COG3284 467 FREDLYYRLNA 477 (606)
T ss_pred chHHHHHHhcC
Confidence 99998886443
No 185
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.82 E-value=4.1e-08 Score=97.50 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=52.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|||||+||+++++.+ +.+++.+++.++... +.. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhhc
Confidence 689999999999999999999876 567777777554310 000 124579999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
... .|..|+.+++
T Consensus 103 ~~~--------------~~~~L~~~~~ 115 (227)
T PRK08903 103 DDA--------------QQIALFNLFN 115 (227)
T ss_pred Cch--------------HHHHHHHHHH
Confidence 655 6778888887
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.4e-08 Score=103.27 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=69.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
+|+||+.+++.+...+.. + + -+..+||+||.|+|||++|+.+|+.+..
T Consensus 5 ~i~g~~~~~~~l~~~~~~---------~-~---------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIK---------N-R---------------------FSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHc---------C-C---------------------CCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 379999999999888741 0 0 0134579999999999999999997632
Q ss_pred -------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 357 -------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 357 -------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
.+..+...+ ..-.+ -..++++.+........+...|++|||+|++... .+++|
T Consensus 54 ~~~~~h~D~~~~~~~~---~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naL 113 (313)
T PRK05564 54 SQQREYVDIIEFKPIN---KKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAF 113 (313)
T ss_pred CCCCCCCCeEEecccc---CCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHH
Confidence 122222110 01111 1234444332211112245679999999999887 89999
Q ss_pred HHHHhC
Q 008014 430 LKMLEG 435 (581)
Q Consensus 430 L~lLEg 435 (581)
|+.||+
T Consensus 114 LK~LEe 119 (313)
T PRK05564 114 LKTIEE 119 (313)
T ss_pred HHHhcC
Confidence 999994
No 187
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.79 E-value=2.2e-08 Score=113.21 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=76.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC--CeEEeccccccccccccc-hhhhHHHHHhh-hhhhhHHhhccCeEEehhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGE-DVESILYKLLT-VSDYNVAAAQQGIVYIDEVDK 406 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~~gyvGe-~~~~~l~~lf~-~a~~~l~~a~~~ILfIDEID~ 406 (581)
++|+|.|+.||+||+++++++..+.. ||+.+..+.-. ...+|. +++..+..--. .....+..++++||||||++.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 79999999999999999999999854 88766554322 234443 33333322111 223456678899999999999
Q ss_pred hhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCC
Q 008014 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (581)
Q Consensus 407 l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~ 449 (581)
+.+. +++.|++.|+.+.++|...|....-
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s~~~ 133 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLALRL 133 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcEEec
Confidence 9988 9999999999999988666655443
No 188
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.78 E-value=8.3e-08 Score=99.37 Aligned_cols=214 Identities=21% Similarity=0.284 Sum_probs=120.9
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEE-EECCCCCChHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGKTL 345 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VL-L~GPPGTGKTt 345 (581)
+...++..|++.+.||.-|++.+..++..|+..- + ..+.=+| |+|+|||||..
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~---------------~-----------p~KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANP---------------N-----------PRKPLVLSFHGWTGTGKNY 125 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC---------------C-----------CCCCeEEEecCCCCCchhH
Confidence 4677999999999999999999999997665431 0 0122344 99999999999
Q ss_pred HHHHHHHHhC-----CCeEEe--ccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCC
Q 008014 346 LAKTLARYVN-----VPFVIA--DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (581)
Q Consensus 346 LAraLA~~l~-----~~fv~i--~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~ 418 (581)
+++.||+.+- -++|.. ...++-...++ +..-.++-..-+..+...+.++.++||+|+|.+.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i----e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI----EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG-------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHH----HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh--------
Confidence 9999998761 122210 11111111111 1111122222233455678899999999999987
Q ss_pred CCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC--hHH----HHHhhhcccCCCCCChhh
Q 008014 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--IEK----TISERRQDSSIGFGAPVR 492 (581)
Q Consensus 419 d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~--Le~----~l~~rrfd~~IgF~~P~~ 492 (581)
+.++|-..||=. +. .--++..+.+||+-+|..+ +-+ ..+.++..+.+++..-..
T Consensus 194 ------Lld~lkpfLdyy------------p~--v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~ 253 (344)
T KOG2170|consen 194 ------LLDVLKPFLDYY------------PQ--VSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEP 253 (344)
T ss_pred ------HHHHHhhhhccc------------cc--cccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhH
Confidence 888888888811 10 0114566777887766554 222 223333333322221111
Q ss_pred hhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh
Q 008014 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (581)
Q Consensus 493 e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~ 552 (581)
. ...+.+. .+...+....+.+ ..+++.+|+|.+++...+.+.+...
T Consensus 254 ~----------L~~~~~n--~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~e 299 (344)
T KOG2170|consen 254 A----------LMQSAFN--EKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRAE 299 (344)
T ss_pred H----------HHHhhhc--cccccccccccch--hhHHhhccCcCcccHHHHHHHHHHH
Confidence 0 0000000 0001111111111 3557889999999999998887743
No 189
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=7.2e-08 Score=108.98 Aligned_cols=85 Identities=14% Similarity=0.294 Sum_probs=54.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
..++|+|++|||||.|++++++.+ +..++.+++.++.. .++..- .....+.|... -....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al-~~~~~~~f~~~-----y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSI-RDGKGDSFRRR-----YREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HhccHHHHHHH-----hhcCCEEEEehhc
Confidence 358899999999999999999876 45667777776552 222111 00001111111 1346899999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+..+.. .+..|+.+++
T Consensus 388 ~l~gke~------------tqeeLF~l~N 404 (617)
T PRK14086 388 FLEDKES------------TQEEFFHTFN 404 (617)
T ss_pred cccCCHH------------HHHHHHHHHH
Confidence 9876421 4677777777
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.77 E-value=4.7e-08 Score=107.35 Aligned_cols=85 Identities=18% Similarity=0.372 Sum_probs=53.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|||||+|++++++.+ +..++.+++.++.. .++..-.......... . .....+|+||||+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~----~--~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKE----K--YRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHH----H--HhcCCEEEEehhh
Confidence 468999999999999999999887 44567777766542 1211100000111111 1 1246799999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+...+. .|..|+.+++
T Consensus 222 ~l~~~~~------------~~~~l~~~~n 238 (450)
T PRK00149 222 FLAGKER------------TQEEFFHTFN 238 (450)
T ss_pred hhcCCHH------------HHHHHHHHHH
Confidence 9865421 5667777776
No 191
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.76 E-value=2.9e-08 Score=113.14 Aligned_cols=48 Identities=35% Similarity=0.608 Sum_probs=39.1
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.+-+.|+||+++++.|..++. ...+++|+||||||||++|+++++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~----------------------------------~~~~~l~~G~~G~GKttla~~l~~~ 73 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAK----------------------------------QRRHVMMIGSPGTGKSMLAKAMAEL 73 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHH----------------------------------hCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344458999999999887774 1257999999999999999999976
Q ss_pred hC
Q 008014 354 VN 355 (581)
Q Consensus 354 l~ 355 (581)
+.
T Consensus 74 l~ 75 (637)
T PRK13765 74 LP 75 (637)
T ss_pred cC
Confidence 63
No 192
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.76 E-value=9.4e-08 Score=91.18 Aligned_cols=130 Identities=28% Similarity=0.391 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC----
Q 008014 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV---- 356 (581)
Q Consensus 281 Gqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~---- 356 (581)
||+++++.|..++.+. + -+..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~----------~---------------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG----------R---------------------LPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCT----------C-----------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcC----------C---------------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 8999999998888510 0 0134789999999999999999987722
Q ss_pred -------------------CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccC
Q 008014 357 -------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (581)
Q Consensus 357 -------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~ 417 (581)
.++.++...... .++ ...++++..............|++|||+|+|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSSS--SBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEecccccc--hhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 122222211100 111 1233343333222122245779999999999988
Q ss_pred CCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec-CCCcChHHHHHhhhc
Q 008014 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG-GAFVDIEKTISERRQ 481 (581)
Q Consensus 418 ~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t-gn~~~Le~~l~~rrf 481 (581)
.|++||+.||+- ..++.||+. .+...+-..++.|.+
T Consensus 118 -------a~NaLLK~LEep---------------------p~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 118 -------AQNALLKTLEEP---------------------PENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp -------HHHHHHHHHHST---------------------TTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred -------HHHHHHHHhcCC---------------------CCCEEEEEEECChHHChHHHHhhce
Confidence 899999999941 233444444 444446677776653
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=7.6e-08 Score=101.35 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=38.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.|+||+++++.+..++.. . + -+..+||+||+|+||+++|+++|+.+
T Consensus 5 ~iiGq~~~~~~L~~~i~~---------~-r---------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQ---------N-R---------------------IAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HhCCHHHHHHHHHHHHHh---------C-C---------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999988841 0 0 02578899999999999999999887
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=7.1e-08 Score=101.99 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=83.7
Q ss_pred ccC-hHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 279 VvG-qd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
|+| |+.+++.|...+.. . + -+..+||+||+|+||+++|+.+|+.+..+
T Consensus 7 i~~~q~~~~~~L~~~~~~---------~-~---------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAK---------N-R---------------------LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHc---------C-C---------------------CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 99999999888841 0 0 01345899999999999999999886321
Q ss_pred --eEEecc--------------ccccccccccchh-hhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCC
Q 008014 358 --FVIADA--------------TTLTQAGYVGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (581)
Q Consensus 358 --fv~i~~--------------s~l~~~gyvGe~~-~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~ 420 (581)
.-...| .|+.-....|..+ -..++++.+.....-..+...|++|||+|++...
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~---------- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS---------- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH----------
Confidence 000000 0110000011110 1223333322211111245679999999999887
Q ss_pred chhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec-CCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 421 SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG-GAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 421 ~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t-gn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
.+++||+.||+- ..++++|++ .+...+-..++.|. ..+.|..+..+.
T Consensus 126 ----a~NaLLK~LEEP---------------------p~~~~~Il~t~~~~~ll~TIrSRc--~~i~~~~~~~~~ 173 (329)
T PRK08058 126 ----AANSLLKFLEEP---------------------SGGTTAILLTENKHQILPTILSRC--QVVEFRPLPPES 173 (329)
T ss_pred ----HHHHHHHHhcCC---------------------CCCceEEEEeCChHhCcHHHHhhc--eeeeCCCCCHHH
Confidence 899999999941 122333333 34444666666654 356666665543
No 195
>PRK06893 DNA replication initiation factor; Validated
Probab=98.76 E-value=8.1e-08 Score=96.38 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=47.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
+.++|+||||||||+|++++|+.+ +.....++..+.. . ...+.+... ....+|+||||+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 356899999999999999999876 2333333332211 0 001111111 24579999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... .+..|+.+++
T Consensus 104 ~~~~~------------~~~~l~~l~n 118 (229)
T PRK06893 104 IGNEE------------WELAIFDLFN 118 (229)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 65421 4556777776
No 196
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=5.8e-08 Score=105.07 Aligned_cols=85 Identities=16% Similarity=0.325 Sum_probs=53.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..-.......... .+ ....+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~----~~--~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKE----KY--RSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHH----HH--HhCCEEEEehhh
Confidence 468899999999999999999877 45677777766542 1111100000001100 11 235799999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+.... ..|..|+.+++
T Consensus 210 ~l~~~~------------~~~~~l~~~~n 226 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFN 226 (405)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 986542 15677777776
No 197
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.73 E-value=1.1e-07 Score=101.45 Aligned_cols=63 Identities=33% Similarity=0.551 Sum_probs=45.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
-+|||.+|.+.+...+. .+..+. +..+.+||.||||||||.||-++|+++|
T Consensus 25 GlVGQ~~AReAagiiv~----mIk~~K-----------------------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVD----MIKEGK-----------------------IAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHH----HHHTT-------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHH----HHhccc-----------------------ccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 47999999998876663 111111 2347899999999999999999999996
Q ss_pred CCeEEecccccc
Q 008014 356 VPFVIADATTLT 367 (581)
Q Consensus 356 ~~fv~i~~s~l~ 367 (581)
.||+.++++++-
T Consensus 78 ~PF~~isgSEiy 89 (398)
T PF06068_consen 78 VPFVSISGSEIY 89 (398)
T ss_dssp S-EEEEEGGGG-
T ss_pred CCeeEcccceee
Confidence 799999999853
No 198
>PRK08727 hypothetical protein; Validated
Probab=98.72 E-value=1.3e-07 Score=95.13 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=48.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
..++|+||+|||||+|+++++..+ +...+.++..++. ..+.+.+... ....+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 358899999999999999998765 3344444433322 1111222211 24469999999988
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... .+..|+.+++
T Consensus 106 ~~~~~------------~~~~lf~l~n 120 (233)
T PRK08727 106 AGQRE------------DEVALFDFHN 120 (233)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 75421 3566777776
No 199
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.5e-08 Score=108.40 Aligned_cols=147 Identities=23% Similarity=0.299 Sum_probs=96.6
Q ss_pred CcccccCccEEEECCCCCChHHHHHHHHHHhCC----CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeE
Q 008014 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (581)
Q Consensus 324 v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~----~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~IL 399 (581)
++.-+..+++||.||+|||||.|+++++.++.. .+..++|+.+.... -+.+.+.+..+|..+-+ ..|+||
T Consensus 425 ~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiI 498 (952)
T KOG0735|consen 425 LSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSII 498 (952)
T ss_pred cccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEE
Confidence 333566789999999999999999999998854 45778998876432 22334555666666543 689999
Q ss_pred EehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHH-HHH
Q 008014 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TIS 477 (581)
Q Consensus 400 fIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~-~l~ 477 (581)
+||++|.+....+..++...+..++....|.+++... .-+.+.+.+|++++.-. +.+ +..
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y------------------~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY------------------LKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred EEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH------------------HccCcEEEEEEechhhhhcChhhcC
Confidence 9999999988433333333333343444444555521 01122367888876433 323 345
Q ss_pred hhhcccCCCCCChhhhh
Q 008014 478 ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 478 ~rrfd~~IgF~~P~~e~ 494 (581)
.++|+..+..+.|..+.
T Consensus 561 ~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTR 577 (952)
T ss_pred ccceEEEEecCCcchhH
Confidence 66788888999998775
No 200
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.67 E-value=1.3e-07 Score=102.34 Aligned_cols=130 Identities=19% Similarity=0.366 Sum_probs=83.2
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
..+++++|++||||+++|+++.... +.+|+.++|+.+.+. ...|.. ...+..........+..+.+|+||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCC-CCCcCCCCcCCCCceeECCCCEEEEe
Confidence 3689999999999999999998665 579999999876421 011111 00000000000112345678999999
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcc
Q 008014 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd 482 (581)
||+.+... +|..|+..++.+.+.- ..... .+ ..++++|++++. ++.+.+..++|.
T Consensus 241 ei~~l~~~--------------~q~~l~~~l~~~~~~~-------~~~~~--~~-~~~~rii~~t~~-~~~~~~~~~~~~ 295 (441)
T PRK10365 241 EIGDISPM--------------MQVRLLRAIQEREVQR-------VGSNQ--TI-SVDVRLIAATHR-DLAAEVNAGRFR 295 (441)
T ss_pred ccccCCHH--------------HHHHHHHHHccCcEEe-------CCCCc--ee-eeceEEEEeCCC-CHHHHHHcCCch
Confidence 99999988 8999999999654421 11111 11 235778887764 677777777665
Q ss_pred cCC
Q 008014 483 SSI 485 (581)
Q Consensus 483 ~~I 485 (581)
..+
T Consensus 296 ~~l 298 (441)
T PRK10365 296 QDL 298 (441)
T ss_pred HHH
Confidence 433
No 201
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.65 E-value=2.3e-08 Score=105.84 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=81.3
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
+.+.+...|.|.+.+|..+.-.+.. +..... .+-......-|+||+|.||||||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~-------~~~~~~-------------~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFG-------GVEKND-------------PDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCCC-------------CT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHh-------cccccc-------------ccccccccccceeeccchhhhHHHHHHHH
Confidence 5566667899999998877544421 000000 00001123469999999999999999988
Q ss_pred HHHhCCCeEEeccccccccccccchhhh-HHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 351 ARYVNVPFVIADATTLTQAGYVGEDVES-ILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 351 A~~l~~~fv~i~~s~l~~~gyvGe~~~~-~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
++.... -+.+++...+..|....-... .-.++.-++ +.+..+.+||++|||+|++..+ .++.|
T Consensus 78 ~~~~pr-~v~~~g~~~s~~gLta~~~~d~~~~~~~lea-Galvlad~GiccIDe~dk~~~~--------------~~~~l 141 (331)
T PF00493_consen 78 AKLAPR-SVYTSGKGSSAAGLTASVSRDPVTGEWVLEA-GALVLADGGICCIDEFDKMKED--------------DRDAL 141 (331)
T ss_dssp CCT-SS-EEEEECCGSTCCCCCEEECCCGGTSSECEEE--HHHHCTTSEEEECTTTT--CH--------------HHHHH
T ss_pred HhhCCc-eEEECCCCcccCCccceeccccccceeEEeC-CchhcccCceeeecccccccch--------------HHHHH
Confidence 766533 233444332222211110000 000011111 1233468899999999999876 78999
Q ss_pred HHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 430 L~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
+++||..+++|...|. .... ..+.-+++++|.
T Consensus 142 ~eaMEqq~isi~kagi-------~~~l-~ar~svlaa~NP 173 (331)
T PF00493_consen 142 HEAMEQQTISIAKAGI-------VTTL-NARCSVLAAANP 173 (331)
T ss_dssp HHHHHCSCEEECTSSS-------EEEE-E---EEEEEE--
T ss_pred HHHHHcCeeccchhhh-------cccc-cchhhhHHHHhh
Confidence 9999999998854332 1223 334566777774
No 202
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=3.5e-07 Score=96.96 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=74.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC------------------------eEEeccccccccccccchhhhHHHHHhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~ 386 (581)
..+||+||+|+|||++|+.+|+.+... +..+....- ...++ -..++++.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHHH
Confidence 457899999999999999999888321 111211000 00111 1234444333
Q ss_pred hhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec
Q 008014 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (581)
Q Consensus 387 a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t 466 (581)
.......+...|++|||+|+|+.. .+++||+.||+- ..+++||++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEEP---------------------p~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEEP---------------------SGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhCC---------------------CCCeEEEEE
Confidence 222122345679999999999987 899999999941 123444444
Q ss_pred CCCc-ChHHHHHhhhcccCCCCCChhhhh
Q 008014 467 GAFV-DIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 467 gn~~-~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
++.. .+-..++.|.+ .+.|..|..+.
T Consensus 143 t~~~~~ll~TI~SRc~--~~~~~~~~~~~ 169 (328)
T PRK05707 143 SHQPSRLLPTIKSRCQ--QQACPLPSNEE 169 (328)
T ss_pred ECChhhCcHHHHhhce--eeeCCCcCHHH
Confidence 4433 46666666654 46777666543
No 203
>PRK05642 DNA replication initiation factor; Validated
Probab=98.64 E-value=2.1e-07 Score=93.87 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=50.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|||||.|++++++.+ +...+.++..++... ...+.+.+ ....+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~---------~~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNL---------EQYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhh---------hhCCEEEEechhhh
Confidence 578899999999999999998765 455666666554421 01111111 12358999999988
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..+.. .+..|+.+++
T Consensus 110 ~~~~~------------~~~~Lf~l~n 124 (234)
T PRK05642 110 AGKAD------------WEEALFHLFN 124 (234)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 64411 4667888887
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.1e-07 Score=97.74 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=46.8
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC-
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~- 357 (581)
+.+.++.++.+...+...++. -.+.+++++|+||||||.+++.+++++...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 678899888888877421111 123579999999999999999999888433
Q ss_pred ----eEEeccccccc
Q 008014 358 ----FVIADATTLTQ 368 (581)
Q Consensus 358 ----fv~i~~s~l~~ 368 (581)
++.++|.....
T Consensus 71 ~~~~~~yINc~~~~t 85 (366)
T COG1474 71 ANVEVVYINCLELRT 85 (366)
T ss_pred ccCceEEEeeeeCCC
Confidence 78999987653
No 205
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=3.6e-07 Score=91.40 Aligned_cols=85 Identities=19% Similarity=0.345 Sum_probs=53.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|+|||.|.+++++.+ +..++.+++.++... +...-....+.+... .-..-.+|+||+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~------~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKD------RLRSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHH------HHCTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhh------hhhcCCEEEEecch
Confidence 468899999999999999998765 445667776665421 110000000011111 11245799999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+..+. ..|..|..+++
T Consensus 108 ~l~~~~------------~~q~~lf~l~n 124 (219)
T PF00308_consen 108 FLAGKQ------------RTQEELFHLFN 124 (219)
T ss_dssp GGTTHH------------HHHHHHHHHHH
T ss_pred hhcCch------------HHHHHHHHHHH
Confidence 997652 26888888888
No 206
>PRK04132 replication factor C small subunit; Provisional
Probab=98.60 E-value=1.9e-07 Score=109.23 Aligned_cols=123 Identities=22% Similarity=0.271 Sum_probs=80.6
Q ss_pred ccccCccEEEEC--CCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhh--hHHhhcc
Q 008014 326 VELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQ 396 (581)
Q Consensus 326 ~~v~~~~VLL~G--PPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~--~l~~a~~ 396 (581)
+++|.-+-+..| |++.||||+|+++|+.+ +.+++++++++.... ..+++....... .+.....
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi--------d~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI--------NVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH--------HHHHHHHHHHHhcCCcCCCCC
Confidence 456666777889 99999999999999987 457999999875321 223333222110 0111124
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHH
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT 475 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~ 475 (581)
.|++|||+|.|+.. .|++|++.||. ...++.||+++|... +-++
T Consensus 632 KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~kIi~t 676 (846)
T PRK04132 632 KIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSSKIIEP 676 (846)
T ss_pred EEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChhhCchH
Confidence 69999999999887 89999999993 123455666665444 4455
Q ss_pred HHhhhcccCCCCCChhhh
Q 008014 476 ISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 476 l~~rrfd~~IgF~~P~~e 493 (581)
++.|. ..+.|..+..+
T Consensus 677 IrSRC--~~i~F~~ls~~ 692 (846)
T PRK04132 677 IQSRC--AIFRFRPLRDE 692 (846)
T ss_pred Hhhhc--eEEeCCCCCHH
Confidence 55553 45566655443
No 207
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.57 E-value=2.7e-07 Score=103.02 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=92.8
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
...|...|-..|.|.+.+|+-|.-.+. -+..+.. . .++++ ...-||+++|.||+||+-+.
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~Lf-------GGv~K~a------~------eg~~l-RGDinv~iVGDPgt~KSQfL 395 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLF-------GGVHKSA------G------EGTSL-RGDINVCIVGDPGTGKSQFL 395 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHh-------CCccccC------C------CCccc-cCCceEEEeCCCCccHHHHH
Confidence 334556666778999999998876663 1111110 0 11111 12369999999999999999
Q ss_pred HHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 348 raLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
++.+.++-...+ +++..-+.+|+.-.-+..-...-|....+.+--+++||..|||+|+|..+ -|.
T Consensus 396 k~v~~fsPR~vY-tsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqv 460 (764)
T KOG0480|consen 396 KAVCAFSPRSVY-TSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQV 460 (764)
T ss_pred HHHhccCCcceE-ecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHH
Confidence 999998855443 33322221221100000000000110011222367899999999999875 599
Q ss_pred HHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 428 aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
+|++.||..+++|...|..- .++ .+.-+|+|+|..+
T Consensus 461 AihEAMEQQtISIaKAGv~a-------TLn-ARtSIlAAANPv~ 496 (764)
T KOG0480|consen 461 AIHEAMEQQTISIAKAGVVA-------TLN-ARTSILAAANPVG 496 (764)
T ss_pred HHHHHHHhheehheecceEE-------eec-chhhhhhhcCCcC
Confidence 99999999999886555322 222 2234566666543
No 208
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.56 E-value=3.5e-07 Score=100.54 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=51.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|||||+|++++++.+ +..++.+++.++.. .+...-....+.+.... + .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~f~~~----~-~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNEFREK----Y-RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHHHHHH----H-HhcCCEEEEechh
Confidence 468999999999999999999876 34566677766442 11100000001111100 0 1247899999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+.... ..|..|+..++
T Consensus 205 ~l~~~~------------~~q~elf~~~n 221 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFN 221 (440)
T ss_pred hhcCcH------------HHHHHHHHHHH
Confidence 886431 15666777766
No 209
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=3.6e-07 Score=100.70 Aligned_cols=87 Identities=17% Similarity=0.326 Sum_probs=53.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+|++|+|||+|++++++.+ +..++.+++.++.. .+... ..... +.++.... ......+|+|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~~-~~~~~~~~--~~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKTH-KEIEQFKN--EICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHhh-hHHHHHHH--HhccCCEEEEeccc
Confidence 468999999999999999999865 34566677766542 11111 00000 11111110 11346799999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+..+. ..+..|..+++
T Consensus 217 ~l~~k~------------~~~e~lf~l~N 233 (450)
T PRK14087 217 FLSYKE------------KTNEIFFTIFN 233 (450)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 886431 15777777777
No 210
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=1.4e-07 Score=97.42 Aligned_cols=128 Identities=26% Similarity=0.426 Sum_probs=83.7
Q ss_pred ccEEEECCCCCChHHHHHHHH------HHhCCCeEEeccccccccc----cccchhhhHHHHHhhhhhhhHHhhccCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLA------RYVNVPFVIADATTLTQAG----YVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA------~~l~~~fv~i~~s~l~~~g----yvGe~~~~~l~~lf~~a~~~l~~a~~~ILf 400 (581)
.++||.||+|.||+.||+.|- ..+..+|++++|..+...+ ..|.- ...+...-......+.++.++.||
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEe
Confidence 689999999999999999885 3347899999999876421 12221 112222222223356678899999
Q ss_pred ehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh
Q 008014 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (581)
Q Consensus 401 IDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr 480 (581)
+|||..+..+ -|..||+.+|+.... +-+....+ .+++-+|+++ ..++...+.+++
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~---------pfgsdr~v-~sdfqliagt-vrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY---------PFGSDRQV-SSDFQLIAGT-VRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC---------CCCCcccc-ccchHHhhhh-HHHHHHHHhccc
Confidence 9999999776 688999999965443 11111112 2344455544 467777777777
Q ss_pred cccC
Q 008014 481 QDSS 484 (581)
Q Consensus 481 fd~~ 484 (581)
|...
T Consensus 343 fred 346 (531)
T COG4650 343 FRED 346 (531)
T ss_pred hHHH
Confidence 6553
No 211
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.6e-07 Score=103.83 Aligned_cols=177 Identities=12% Similarity=0.196 Sum_probs=111.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
..+||+|+||||||++++++|.+++.++++++|.++.. .-.+.+ +..+...|.+++. ..|+|||+-.+|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~-~s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVA-ESASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhh-cccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 46889999999999999999999999999999999874 222333 6677778877764 58999999999988744
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGA 489 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~ 489 (581)
++. + ...++++.+..+|.... .......+++|++++..+ +..-+ ++.|-..|.++.
T Consensus 506 ~dg---g---ed~rl~~~i~~~ls~e~----------------~~~~~~~~ivv~t~~s~~~lp~~i-~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 506 QDG---G---EDARLLKVIRHLLSNED----------------FKFSCPPVIVVATTSSIEDLPADI-QSLFLHEIEVPA 562 (953)
T ss_pred CCC---c---hhHHHHHHHHHHHhccc----------------ccCCCCceEEEEeccccccCCHHH-HHhhhhhccCCC
Confidence 221 1 12236666666665110 112344567777776554 33223 445666777777
Q ss_pred hhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh
Q 008014 490 PVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (581)
Q Consensus 490 P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~ 552 (581)
+++++ ..++++.+..... +.. .+.--...-....++..++...+...
T Consensus 563 lse~q-----------Rl~iLq~y~~~~~----~n~-~v~~k~~a~~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 563 LSEEQ-----------RLEILQWYLNHLP----LNQ-DVNLKQLARKTSGFSFGDLEALVAHS 609 (953)
T ss_pred CCHHH-----------HHHHHHHHHhccc----cch-HHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 76654 3444444432111 110 01111222345668888888888765
No 212
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.53 E-value=2.6e-07 Score=103.78 Aligned_cols=135 Identities=23% Similarity=0.342 Sum_probs=82.0
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
+...+...|.|.|.+|+-|.-++. -+.+..... ++ -....-||||+|.||||||-+.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLf-------GGt~k~~~~--~~-----------~~R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLF-------GGTRKEDEK--SG-----------RFRGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHh-------cCCcccccc--cc-----------cccccceEEEecCCCcCHHHHHHHH
Confidence 444555568899999988766663 111111000 00 0112369999999999999999999
Q ss_pred HHHhCCCeEEecc--cc---ccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhH
Q 008014 351 ARYVNVPFVIADA--TT---LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (581)
Q Consensus 351 A~~l~~~fv~i~~--s~---l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~v 425 (581)
++.+..-.+ .++ +. ++ -|+-.+. ..+++..+. ..+-.+.+||..|||+|||..+ .
T Consensus 483 ~~l~pRg~y-TSGkGsSavGLT--ayVtrd~--dtkqlVLes-GALVLSD~GiCCIDEFDKM~dS--------------t 542 (804)
T KOG0478|consen 483 HRLLPRGVY-TSGKGSSAVGLT--AYVTKDP--DTRQLVLES-GALVLSDNGICCIDEFDKMSDS--------------T 542 (804)
T ss_pred HHhCCccee-ecCCccchhcce--eeEEecC--ccceeeeec-CcEEEcCCceEEchhhhhhhHH--------------H
Confidence 998844332 111 11 11 1221110 011111111 1223367899999999999877 7
Q ss_pred HHHHHHHHhCceeeecCCCc
Q 008014 426 QQALLKMLEGTVVNVPEKGA 445 (581)
Q Consensus 426 q~aLL~lLEg~~v~ipe~g~ 445 (581)
++.|+++||..+++|+..|.
T Consensus 543 rSvLhEvMEQQTvSIAKAGI 562 (804)
T KOG0478|consen 543 RSVLHEVMEQQTLSIAKAGI 562 (804)
T ss_pred HHHHHHHHHHhhhhHhhcce
Confidence 99999999999999876663
No 213
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.51 E-value=2.8e-06 Score=87.92 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=43.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
-++||+.|.+.....+. ..+ .+. ...+.+||.||||||||.||-++++++|
T Consensus 39 g~vGQ~~AReAagiivd-lik-------~Kk-------------------maGravLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVD-LIK-------SKK-------------------MAGRAVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred ccccchhhhhhhhHHHH-HHH-------hhh-------------------ccCcEEEEecCCCCchhHHHHHHHHHhCCC
Confidence 37999999887655543 011 111 1237899999999999999999999984
Q ss_pred CCeEEecccc
Q 008014 356 VPFVIADATT 365 (581)
Q Consensus 356 ~~fv~i~~s~ 365 (581)
.||.-..+++
T Consensus 92 vPFcpmvgSE 101 (456)
T KOG1942|consen 92 VPFCPMVGSE 101 (456)
T ss_pred CCcccccchh
Confidence 5666555555
No 214
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.48 E-value=3e-07 Score=109.73 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=109.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-cccccchh----hhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDV----ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-~gyvGe~~----~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
+++||.|.||+|||.|..++|+..|..+++++.++-++ .+.+|.++ .+.+ .+..+++.-+...++-|++||++
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEeehhh
Confidence 68999999999999999999999999999999987443 12333321 1111 12233344445678999999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh-CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccC
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE-g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~ 484 (581)
-++.+ |...|-..|| .+...|||-...+..|.+ +++.+|-|..+ .|
T Consensus 1622 LaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~Hpn--------frVFAaqNPq~------qg----- 1668 (4600)
T COG5271 1622 LASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPN--------FRVFAAQNPQD------QG----- 1668 (4600)
T ss_pred hhHHH--------------HHHHHHHHHhhccccccccccceeeccCC--------eeeeeecCchh------cC-----
Confidence 98877 9999999999 456778887766665554 44444444211 00
Q ss_pred CCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHH
Q 008014 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (581)
Q Consensus 485 IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~ 554 (581)
--.+|+...|++||.. |..+.|+.+++..|+..+..
T Consensus 1669 ---------------------------------gGRKgLPkSF~nRFsv-V~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1669 ---------------------------------GGRKGLPKSFLNRFSV-VKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ---------------------------------CCcccCCHHHhhhhhe-EEecccccchHHHHHHhhCC
Confidence 0123688899999964 77889999999999986554
No 215
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=7.7e-07 Score=97.97 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=52.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .+...-..... ..|.. ......+|+||||+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~-~~f~~-----~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEM-QRFRQ-----FYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchH-HHHHH-----HcccCCEEEEcchhhh
Confidence 468999999999999999999876 56677777655432 11100000000 01111 1135679999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..+. ..|..|+.+++
T Consensus 215 ~~k~------------~~qeelf~l~N 229 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFN 229 (445)
T ss_pred cCCh------------hhHHHHHHHHH
Confidence 6541 15667777765
No 216
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.44 E-value=4.1e-06 Score=84.76 Aligned_cols=172 Identities=22% Similarity=0.347 Sum_probs=107.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
+++|-+..++.|.+-....... .+-.||||+|.-|||||+|+|++-.++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G----------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC----------------------------CcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 4799999999886655321111 123699999999999999999998777
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+..+++|+..++.. -..+-+.+... ...=|||+|+. +-+ .++..-.+|-.+||
T Consensus 113 glrLVEV~k~dl~~--------Lp~l~~~Lr~~------~~kFIlFcDDL---SFe----------~gd~~yK~LKs~Le 165 (287)
T COG2607 113 GLRLVEVDKEDLAT--------LPDLVELLRAR------PEKFILFCDDL---SFE----------EGDDAYKALKSALE 165 (287)
T ss_pred CCeEEEEcHHHHhh--------HHHHHHHHhcC------CceEEEEecCC---CCC----------CCchHHHHHHHHhc
Confidence 56788888877653 11222222222 23458999962 111 11225778888999
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
|+.. -...|++|.+|+|..- |.+.+.++ .++. ..+
T Consensus 166 G~ve-----------------~rP~NVl~YATSNRRHLl~e~~~dn-----~~~~----------------------~ei 201 (287)
T COG2607 166 GGVE-----------------GRPANVLFYATSNRRHLLPEDMKDN-----EGST----------------------GEI 201 (287)
T ss_pred CCcc-----------------cCCCeEEEEEecCCcccccHhhhhC-----CCcc----------------------ccc
Confidence 7532 2356788888888655 22222211 1111 111
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHh
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~ 550 (581)
.+.+-.+..+ .+-.||..++.|.+.+.++..+|+.
T Consensus 202 h~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 202 HPSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred ChhHHHHHhh--chhhhcceeecccCCCHHHHHHHHH
Confidence 2222111112 4568999999999999999999998
No 217
>PRK12377 putative replication protein; Provisional
Probab=98.43 E-value=5.6e-07 Score=91.92 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=53.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
.+++|+||||||||+||.+|++.+ +..++.++..++... .|... ....+.+. ......+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~---~~~~~~l~------~l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNG---QSGEKFLQ------ELCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhcc---chHHHHHH------HhcCCCEEEEcCC
Confidence 579999999999999999999887 555666666554420 01000 00001111 1135679999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
....... ..+..|.++++.
T Consensus 173 g~~~~s~------------~~~~~l~~ii~~ 191 (248)
T PRK12377 173 GIQRETK------------NEQVVLNQIIDR 191 (248)
T ss_pred CCCCCCH------------HHHHHHHHHHHH
Confidence 6653221 157889999983
No 218
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=1.5e-06 Score=99.27 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=40.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+||++.++.|...+... .+...++. ++|+||||||||++++++|+.++.
T Consensus 85 el~~~~~ki~~l~~~l~~~----------------------------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQ----------------------------VLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhc----------------------------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3799999999888777411 11112234 779999999999999999999876
Q ss_pred CeEE
Q 008014 357 PFVI 360 (581)
Q Consensus 357 ~fv~ 360 (581)
.+++
T Consensus 137 ~~~E 140 (637)
T TIGR00602 137 QVQE 140 (637)
T ss_pred HHHH
Confidence 6544
No 219
>PRK06620 hypothetical protein; Validated
Probab=98.37 E-value=4.3e-06 Score=83.46 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
..++|+||||||||+|++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56899999999999999999987754
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.5e-06 Score=91.25 Aligned_cols=95 Identities=28% Similarity=0.391 Sum_probs=66.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
..+||.||||+|||+||-.+|...+.||+.+-..+-. .|+.-..--..+.+.|+.+. +..-+||++|+|+++..-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m-iG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM-IGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERLLDY 613 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc-cCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhhhcc
Confidence 5789999999999999999999999999877554321 22222211234555665543 456789999999999765
Q ss_pred hhhcccCCCCchhhHHHHHHHHHh
Q 008014 411 AESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..+|...+.. +.++|+-++.
T Consensus 614 ---vpIGPRfSN~-vlQaL~VllK 633 (744)
T KOG0741|consen 614 ---VPIGPRFSNL-VLQALLVLLK 633 (744)
T ss_pred ---cccCchhhHH-HHHHHHHHhc
Confidence 3345544433 7888888887
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.3e-06 Score=87.38 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=70.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC--eEEecccc--------------c---c--ccccccchhhhHHHHHhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATT--------------L---T--QAGYVGEDVESILYKLLTVSDY 389 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~--------------l---~--~~gyvGe~~~~~l~~lf~~a~~ 389 (581)
..+||+||.|+||+++|+.+|+.+... --.-.|.. + . +...++. ..++++.+....
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i---d~iR~l~~~~~~ 101 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV---DQVREINEKVSQ 101 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH---HHHHHHHHHHhh
Confidence 466799999999999999999877321 00001111 0 0 0011121 233443332221
Q ss_pred hHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecC-C
Q 008014 390 NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-A 468 (581)
Q Consensus 390 ~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg-n 468 (581)
........|++||++|+|+.. .+|+||+.||+ ...+++||..+ +
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~t~~ 146 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQADL 146 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEECC
Confidence 112245679999999999987 89999999994 12234444444 4
Q ss_pred CcChHHHHHhhhcccCCCCCChhhh
Q 008014 469 FVDIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 469 ~~~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
...+-..++.|.+ .+.|..|..+
T Consensus 147 ~~~llpTI~SRC~--~~~~~~~~~~ 169 (325)
T PRK06871 147 SAALLPTIYSRCQ--TWLIHPPEEQ 169 (325)
T ss_pred hHhCchHHHhhce--EEeCCCCCHH
Confidence 3445556666543 4556655444
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=5.8e-06 Score=88.21 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=43.9
Q ss_pred hccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC-cCh
Q 008014 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF-VDI 472 (581)
Q Consensus 394 a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~-~~L 472 (581)
+...|++||++|+|+.. ..|+||+.||+ ...+++||..++. ..+
T Consensus 131 ~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t~~~~~L 175 (342)
T PRK06964 131 GGARVVVLYPAEALNVA--------------AANALLKTLEE---------------------PPPGTVFLLVSARIDRL 175 (342)
T ss_pred CCceEEEEechhhcCHH--------------HHHHHHHHhcC---------------------CCcCcEEEEEECChhhC
Confidence 45669999999999988 89999999994 1223444444444 446
Q ss_pred HHHHHhhhcccCCCCCChhhhh
Q 008014 473 EKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 473 e~~l~~rrfd~~IgF~~P~~e~ 494 (581)
...++.|. ..+.|+.|..+.
T Consensus 176 LpTI~SRc--q~i~~~~~~~~~ 195 (342)
T PRK06964 176 LPTILSRC--RQFPMTVPAPEA 195 (342)
T ss_pred cHHHHhcC--EEEEecCCCHHH
Confidence 66777665 356677665543
No 223
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.33 E-value=1.4e-05 Score=80.78 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+.++|+||+|+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999998875
No 224
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.33 E-value=5.8e-07 Score=100.04 Aligned_cols=154 Identities=18% Similarity=0.302 Sum_probs=88.8
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
|...+...|.|.+.+|+.+..++.--.++ -+++. +--...-||||.|.|||||+-..|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~k--------n~~~k------------hkvRGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPK--------NPGGK------------HKVRGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCcc--------CCCCC------------ceeccceeEEEecCCCccHHHHHHHH
Confidence 55556667899999999998887411111 01100 11123369999999999999999999
Q ss_pred HHHhCCCeEEeccccccccc---cccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 351 ARYVNVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 351 A~~l~~~fv~i~~s~l~~~g---yvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
++.....++..--.. +..| |+-.+ ...+++.-.+ +.+-.+..||.+|||+|+|... -..
T Consensus 503 eK~s~RAV~tTGqGA-SavGLTa~v~Kd--PvtrEWTLEa-GALVLADkGvClIDEFDKMndq--------------DRt 564 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGA-SAVGLTAYVRKD--PVTREWTLEA-GALVLADKGVCLIDEFDKMNDQ--------------DRT 564 (854)
T ss_pred HhcCcceeEeccCCc-cccceeEEEeeC--Cccceeeecc-CeEEEccCceEEeehhhhhccc--------------ccc
Confidence 988765544221111 0011 11111 0011121111 1223367899999999999876 345
Q ss_pred HHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCc
Q 008014 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (581)
Q Consensus 428 aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~ 470 (581)
.+.+.||...++|...|... .--....+|+|+|..
T Consensus 565 SIHEAMEQQSISISKAGIVt--------sLqArctvIAAanPi 599 (854)
T KOG0477|consen 565 SIHEAMEQQSISISKAGIVT--------SLQARCTVIAAANPI 599 (854)
T ss_pred hHHHHHHhcchhhhhhhHHH--------HHHhhhhhheecCCC
Confidence 68889997777764433222 222335566777654
No 225
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.1e-05 Score=85.23 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=69.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC--eEEeccc-----------ccc----ccccccch-----hhhHHHHHhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADAT-----------TLT----QAGYVGED-----VESILYKLLTVSD 388 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~--fv~i~~s-----------~l~----~~gyvGe~-----~~~~l~~lf~~a~ 388 (581)
..+||+||+|+||+++|+++|+.+-.. --.-.|. |+. .....|.. .-..++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 358899999999999999999877221 0000000 100 00001100 0122333332221
Q ss_pred hhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec-C
Q 008014 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG-G 467 (581)
Q Consensus 389 ~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t-g 467 (581)
..-......|++|||+|+|+.. .+|+||+.||+- ..+++||.. .
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEEP---------------------p~~~~fiL~~~ 151 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEEP---------------------SPGRYLWLISA 151 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhCC---------------------CCCCeEEEEEC
Confidence 1111234569999999999987 899999999941 123333333 3
Q ss_pred CCcChHHHHHhhhcccCCCCCChhhh
Q 008014 468 AFVDIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 468 n~~~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
+...+-..++.|.+ .+.|..|..+
T Consensus 152 ~~~~lLpTIrSRCq--~i~~~~~~~~ 175 (319)
T PRK08769 152 QPARLPATIRSRCQ--RLEFKLPPAH 175 (319)
T ss_pred ChhhCchHHHhhhe--EeeCCCcCHH
Confidence 33446666766654 4566666544
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.28 E-value=1.1e-06 Score=78.76 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=27.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh--------CCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l--------~~~fv~i~~s~l 366 (581)
+.++++||+|+|||++++.+++.+ ..+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 678899999999999999999877 566677776653
No 227
>PRK08116 hypothetical protein; Validated
Probab=98.27 E-value=2.6e-06 Score=87.86 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=52.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
.+++|+|++|||||+||.++++.+ +.+++.++..++... .|.... .....+.+.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999876 667777777664320 011000 0000111111 134569999998
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
...... +..+..|..+++
T Consensus 188 g~e~~t------------~~~~~~l~~iin 205 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIID 205 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHH
Confidence 542111 126788999998
No 228
>PRK06526 transposase; Provisional
Probab=98.23 E-value=9e-07 Score=90.66 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=52.8
Q ss_pred ccCccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 328 LEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 328 v~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
-...+++|+||||||||+||.+|+..+ +..+..+++.++.+. +........+...+. ......+|+|||+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~------~l~~~dlLIIDD~ 168 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELV------KLGRYPLLIVDEV 168 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHH------HhccCCEEEEccc
Confidence 455799999999999999999998765 455544545443320 000000001111111 1134679999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+..... .++.|.++++
T Consensus 169 g~~~~~~~------------~~~~L~~li~ 186 (254)
T PRK06526 169 GYIPFEPE------------AANLFFQLVS 186 (254)
T ss_pred ccCCCCHH------------HHHHHHHHHH
Confidence 98754321 5677888887
No 229
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=3.3e-06 Score=96.00 Aligned_cols=115 Identities=22% Similarity=0.393 Sum_probs=75.8
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEeccccccc---------cccccchh--------
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV-------- 376 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~~---------~gyvGe~~-------- 376 (581)
+.+++++++++++++.+. |+||+|.||||+|..|-+.+... -+.+|+.++.+ .++||+++
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 456999999999999888 99999999999999999888321 24455555433 34555542
Q ss_pred hhH-----------HHHHhhhhhh----------------------------h-----HHhhccCeEEehhhhhhhhhhh
Q 008014 377 ESI-----------LYKLLTVSDY----------------------------N-----VAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 377 ~~~-----------l~~lf~~a~~----------------------------~-----l~~a~~~ILfIDEID~l~~~r~ 412 (581)
+.+ +...-+.+.. . .--.+|.||++||+-++....+
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 000 1111111100 0 0114799999999988776522
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeee
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
..-+|.+|-+.|++.+|.+
T Consensus 640 ---------E~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 640 ---------EYLVQEALDRLMQGRTVLV 658 (716)
T ss_pred ---------HHHHHHHHHHhhcCCeEEE
Confidence 1238999999999877654
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.2e-05 Score=85.35 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=73.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-------------------------CeEEeccccc-cccc----cccchhhhHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-------------------------PFVIADATTL-TQAG----YVGEDVESIL 380 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-------------------------~fv~i~~s~l-~~~g----yvGe~~~~~l 380 (581)
..+||+||+|+|||++|+.+|+.+.. .|+.+....- .+.| -++ -..+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 45889999999999999999988731 2333332110 0000 011 1234
Q ss_pred HHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCc
Q 008014 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKD 460 (581)
Q Consensus 381 ~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsn 460 (581)
+++.+............|++||+++.+... .+++|++.||+. ....
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep--------------------~~~~ 144 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEP--------------------PPQV 144 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhC--------------------cCCC
Confidence 444433322222345679999999999988 899999999931 0111
Q ss_pred EEEEecCCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 461 ILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 461 ii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
.+++.+.+...+...++.|. ..+.|..|..+.
T Consensus 145 ~~Ilvth~~~~ll~ti~SRc--~~~~~~~~~~~~ 176 (325)
T PRK08699 145 VFLLVSHAADKVLPTIKSRC--RKMVLPAPSHEE 176 (325)
T ss_pred EEEEEeCChHhChHHHHHHh--hhhcCCCCCHHH
Confidence 23344444444666666654 356677766554
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.3e-05 Score=85.19 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=73.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC--CeEEecccc--------------c---ccc---ccccchhhhHHHHHhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATT--------------L---TQA---GYVGEDVESILYKLLTVSD 388 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~--------------l---~~~---gyvGe~~~~~l~~lf~~a~ 388 (581)
..+||+||+|+||+++|+++|+.+-. +--.-.|.. + ... ..++. ..++++.+...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~i---dqiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGV---DAVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCH---HHHHHHHHHHh
Confidence 46679999999999999999987722 100001111 0 000 01111 22333333222
Q ss_pred hhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecC-
Q 008014 389 YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG- 467 (581)
Q Consensus 389 ~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg- 467 (581)
..-..+...|++||++|+|+.. .+|+||+.||+- ..+++||..+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEEP---------------------p~~t~fiL~t~ 146 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEEP---------------------PENTWFFLACR 146 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcCC---------------------CCCeEEEEEEC
Confidence 1112245679999999999988 899999999941 2234444444
Q ss_pred CCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 468 AFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 468 n~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
+...+-..++.|.+ .+.|+.|..+.
T Consensus 147 ~~~~lLpTIrSRCq--~~~~~~~~~~~ 171 (334)
T PRK07993 147 EPARLLATLRSRCR--LHYLAPPPEQY 171 (334)
T ss_pred ChhhChHHHHhccc--cccCCCCCHHH
Confidence 44447777777765 56777776543
No 232
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=5.4e-06 Score=83.39 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
..++|+||+|+|||+|++++++..+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~ 71 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL 71 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 458899999999999999999876544
No 233
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.18 E-value=3.6e-06 Score=100.98 Aligned_cols=119 Identities=26% Similarity=0.302 Sum_probs=82.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-cccccc----hhhhHHHHHhhhhhhhHH-hhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGE----DVESILYKLLTVSDYNVA-AAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-~gyvGe----~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEI 404 (581)
-++|+.||+-+|||.+.+.+|+..|..|++++-.+.++ ..|+|. +.++.- |... ..+. ...+--|++||.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~ls---FkEG-vLVeAlR~GyWIVLDEL 964 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLS---FKEG-VLVEALRRGYWIVLDEL 964 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCcee---eehh-HHHHHHhcCcEEEeecc
Confidence 48999999999999999999999999999999988654 234443 211000 0000 0111 134568899999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh-CceeeecCCCcccCCCCCceeeccCcEEEEecC
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE-g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg 467 (581)
+-++.+ |..+|-++|| .+.+.|||......+|..++..+|.|...+-+|
T Consensus 965 NLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgG 1014 (4600)
T COG5271 965 NLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGG 1014 (4600)
T ss_pred ccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccc
Confidence 988777 9999999999 567888887776666666655555554444333
No 234
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.18 E-value=6.8e-06 Score=86.03 Aligned_cols=86 Identities=28% Similarity=0.393 Sum_probs=57.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC------eEEeccccccccccccchhhhHHHHHhhhhhh--hHHh-hccCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAA-AQQGIVYI 401 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~--~l~~-a~~~ILfI 401 (581)
.|.|++||||+|||+...+.|+.+-.+ +.++++++-. |-++-+.-...|..... .+.. +....+++
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r-----gid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR-----GIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc-----CCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 499999999999999999999887442 2344444433 22222222233333221 1111 35678999
Q ss_pred hhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 402 DEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
||+|+++.+ .|++|.+.++.
T Consensus 138 DEADaMT~~--------------AQnALRRviek 157 (360)
T KOG0990|consen 138 DEADAMTRD--------------AQNALRRVIEK 157 (360)
T ss_pred cchhHhhHH--------------HHHHHHHHHHH
Confidence 999999988 89999998884
No 235
>PRK08181 transposase; Validated
Probab=98.15 E-value=1.9e-06 Score=89.10 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=54.8
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
...+++|+||||||||.||.+++..+ +..++.++..++... +..........+.+.. -....+|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEeccc
Confidence 34689999999999999999999765 556666666655421 1000000011111111 1356799999998
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
...... ..++.|+++++
T Consensus 178 ~~~~~~------------~~~~~Lf~lin 194 (269)
T PRK08181 178 YVTKDQ------------AETSVLFELIS 194 (269)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 875541 15778899998
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.14 E-value=5.7e-06 Score=84.38 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=52.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccc--hhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+|+||||||+||.++|..+ +..++.++..++.. .+... .......+++.. .....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~-~l~~~~~~~~~~~~~~l~~------l~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-AMKDTFSNSETSEEQLLND------LSNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH-HHHHHHhhccccHHHHHHH------hccCCEEEEeCCC
Confidence 478999999999999999999888 56677676666442 01000 000000111111 1346799999998
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... +-.+..|.++++
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~ 189 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVD 189 (244)
T ss_pred CCCCC------------HHHHHHHHHHHH
Confidence 86432 114567788888
No 237
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.12 E-value=6.6e-06 Score=75.91 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=49.7
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEE-EECCCCCChH
Q 008014 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGKT 344 (581)
Q Consensus 266 ~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VL-L~GPPGTGKT 344 (581)
.....++..|++.+.||.-|++.+..+|..++... . + .+.=|| |+|+||||||
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~--------p-------------~KpLVlSfHG~tGtGKn 67 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----N--------P-------------RKPLVLSFHGWTGTGKN 67 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----C--------C-------------CCCEEEEeecCCCCcHH
Confidence 45778999999999999999999999997554320 0 0 112233 9999999999
Q ss_pred HHHHHHHHHh
Q 008014 345 LLAKTLARYV 354 (581)
Q Consensus 345 tLAraLA~~l 354 (581)
.+++.||+.+
T Consensus 68 ~v~~liA~~l 77 (127)
T PF06309_consen 68 FVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 238
>PF13173 AAA_14: AAA domain
Probab=98.11 E-value=1e-05 Score=73.64 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=45.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC--CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~--~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
+.++|.||.||||||+++.+++.+. ..++.+++.+....... . .. +.+.+... ......+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~----~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLEL----IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence 4678999999999999999998775 67777887764321000 0 00 11111111 11256899999999985
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=3.1e-06 Score=86.80 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCcccccCccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCe
Q 008014 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (581)
Q Consensus 322 ~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~I 398 (581)
....+--...+++|+||||||||+||.+++..+ +..+..+++.++.. .+........+...+... ...+.+
T Consensus 94 ~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dl 167 (259)
T PRK09183 94 RSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRL 167 (259)
T ss_pred hcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCE
Confidence 344443444578899999999999999997664 55555556555431 111000001111111110 135679
Q ss_pred EEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 399 LfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
++|||++.....+. .++.|+++++
T Consensus 168 LiiDdlg~~~~~~~------------~~~~lf~li~ 191 (259)
T PRK09183 168 LIIDEIGYLPFSQE------------EANLFFQVIA 191 (259)
T ss_pred EEEcccccCCCChH------------HHHHHHHHHH
Confidence 99999987644321 4667888887
No 240
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=6e-05 Score=79.80 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=72.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-----------------------CeEEeccccccccccccchhhhHHHHHhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-----------------------~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a 387 (581)
..+||.||.|+||+++|+.+|+.+-. ++..+....- ...++. ..++++.+..
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~v---dqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSITV---EQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcCCH---HHHHHHHHHH
Confidence 46789999999999999999987721 1222211100 001111 2233332222
Q ss_pred hhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec-
Q 008014 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG- 466 (581)
Q Consensus 388 ~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t- 466 (581)
......+...|++||++|+|... .+|+||+.||+ ...+++||..
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 11112234579999999999987 89999999994 1223444444
Q ss_pred CCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 467 GAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 467 gn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
.+...+-..++.|.+ .+.|+.|..+.
T Consensus 146 ~~~~~lLpTI~SRCq--~~~~~~~~~~~ 171 (319)
T PRK06090 146 HNQKRLLPTIVSRCQ--QWVVTPPSTAQ 171 (319)
T ss_pred CChhhChHHHHhcce--eEeCCCCCHHH
Confidence 444446667777654 56677666543
No 241
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.08 E-value=5e-06 Score=91.10 Aligned_cols=139 Identities=22% Similarity=0.314 Sum_probs=85.2
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
.+.+.+.+...|.|.+++|+.|..++.- ...+.+ -++-.+ ...-||+|+|.||+.||-|.
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVG--------gvd~~~-----------~dGMKI-RGdINicLmGDPGVAKSQLL 392 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVG--------GVDKSP-----------GDGMKI-RGDINICLMGDPGVAKSQLL 392 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhC--------CCCCCC-----------CCCcee-ecceeEEecCCCchhHHHHH
Confidence 4456666777899999999998877640 000000 011111 12358999999999999999
Q ss_pred HHHHHHhCCCeEEeccccccccccccchhhhHHHH----HhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYK----LLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 348 raLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~----lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
+.+.+..-...+..-..+ .=||-+ +...++ .+......+--+.+||..|||+|++...
T Consensus 393 kyi~rlapRgvYTTGrGS----SGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~------------- 454 (721)
T KOG0482|consen 393 KYISRLAPRGVYTTGRGS----SGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES------------- 454 (721)
T ss_pred HHHHhcCcccceecCCCC----Cccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------------
Confidence 999988744443222211 112222 111111 1111111233467899999999999876
Q ss_pred hHHHHHHHHHhCceeeecCCCc
Q 008014 424 GVQQALLKMLEGTVVNVPEKGA 445 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~ipe~g~ 445 (581)
-..++.++||..+++|...|.
T Consensus 455 -DRtAIHEVMEQQTISIaKAGI 475 (721)
T KOG0482|consen 455 -DRTAIHEVMEQQTISIAKAGI 475 (721)
T ss_pred -hhHHHHHHHHhhhhhhhhhcc
Confidence 467899999998888865553
No 242
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=1.1e-05 Score=82.16 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=34.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++++.++.++ +.||+|||||||.+.||...
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999 99999999999999999766
No 243
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.03 E-value=6.3e-06 Score=90.39 Aligned_cols=195 Identities=19% Similarity=0.301 Sum_probs=109.7
Q ss_pred HHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHH
Q 008014 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (581)
Q Consensus 269 ~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAr 348 (581)
+.|.+.+...|.|.+++|+.+.-++. .+.++..| |++.. ..+-+|||.|.|||.|+-|.|
T Consensus 323 e~is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~Lp------------Dg~~l-RGDINVLLLGDPgtAKSQlLK 382 (729)
T KOG0481|consen 323 ERISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRLP------------DGVTL-RGDINVLLLGDPGTAKSQLLK 382 (729)
T ss_pred HHHhhccCchhcCchhHHHHHHHHhh-------cCccccCC------------Cccee-ccceeEEEecCCchhHHHHHH
Confidence 33566666778999999999887663 23333322 11111 123599999999999999999
Q ss_pred HHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHH
Q 008014 349 TLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (581)
Q Consensus 349 aLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~a 428 (581)
-+-+..-.-++ .++.--..+|+...-........|-......-.+++||+.|||+|+|.++ -.-+
T Consensus 383 FvEkvsPIaVY-TSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVA 447 (729)
T KOG0481|consen 383 FVEKVSPIAVY-TSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVA 447 (729)
T ss_pred HHHhcCceEEE-ecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhH
Confidence 88766533222 22211110111000000000011111111223367899999999999766 3558
Q ss_pred HHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHH
Q 008014 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (581)
Q Consensus 429 LL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~ 508 (581)
+.+.||..+++|...|.+. +-.++.-++++.|..- ||.| ....|+
T Consensus 448 IHEAMEQQTISIAKAGITT--------~LNSRtSVLAAANpvf-------GRyD---d~Kt~~----------------- 492 (729)
T KOG0481|consen 448 IHEAMEQQTISIAKAGITT--------TLNSRTSVLAAANPVF-------GRYD---DTKTGE----------------- 492 (729)
T ss_pred HHHHHHhhhHHHhhhccee--------eecchhhhhhhcCCcc-------cccc---ccCCcc-----------------
Confidence 9999998888886555433 2233444555555321 1211 111111
Q ss_pred HHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHH
Q 008014 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTEN 543 (581)
Q Consensus 509 l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~Lsed 543 (581)
| +..|.|..++||+.|..+.+.-.+
T Consensus 493 --------d--NIDf~~TILSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 493 --------D--NIDFMPTILSRFDMIFIVKDEHDE 517 (729)
T ss_pred --------c--ccchhhhHhhhccEEEEEeccCcc
Confidence 1 124789999999999988875443
No 244
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.98 E-value=2.2e-05 Score=69.69 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=47.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
|.|+||||+|||++|+.|++.+...+..-....+ |.... .. +.+... ....++++||+......-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~-~~---~~w~gY------~~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNP-GD---KFWDGY------QGQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCC-cc---chhhcc------CCCcEEEEeecCcccccc-
Confidence 5799999999999999998777432210100010 11000 11 111111 134689999988876430
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeee
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
.....+.|+++++-..+.+
T Consensus 66 ---------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 66 ---------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred ---------chHHHHHHHHHHhcCCccc
Confidence 1115678889988555444
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.95 E-value=9.1e-06 Score=78.91 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=50.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc---cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~---~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
.+++|+||||||||.||.++++.+ +.+...++..++.. ..+........+.. -....+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~----------l~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR----------LKRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH----------HHTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc----------cccccEeccccc
Confidence 689999999999999999999766 67777777777542 11111111111111 134579999998
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
...... +...+.|.++++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 765432 125677888888
No 246
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.94 E-value=4.3e-05 Score=74.19 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=22.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..++++||.|+|||+|++.+.+.+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 678899999999999999999887
No 247
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=7.7e-05 Score=81.59 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=62.8
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh--
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-- 354 (581)
..++|.+..+..+.+.+.+|...- ..+.+.+.|-||||||.+..-+-..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~----------------------------t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELN----------------------------TSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcc----------------------------cCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 358899999999998886544320 12677899999999999887553222
Q ss_pred --CC-CeEEecccccccccc-------------ccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 355 --NV-PFVIADATTLTQAGY-------------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 355 --~~-~fv~i~~s~l~~~gy-------------vGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.. ..+.++|.++....- ++...+......|+..- ......-|+++||+|.+...
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~--~q~k~~~llVlDEmD~L~tr 271 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT--KQSKFMLLLVLDEMDHLITR 271 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hcccceEEEEechhhHHhhc
Confidence 22 348899988764221 11111111112222110 11123568899999999854
No 248
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.89 E-value=7.6e-05 Score=83.19 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=109.3
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhH-HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAra 349 (581)
+.+.|...|.|.+.+|+.+.-++.--. +.+.++ +.-...-++|++|.|-|.|+-|.|.
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NG---------------------shlRGDINiLlvGDPSvAKSQLLRy 353 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENG---------------------SHLRGDINILLVGDPSVAKSQLLRY 353 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCC---------------------ceeccceeEEEecCchHHHHHHHHH
Confidence 334556678999999998876663100 111111 1122346999999999999999999
Q ss_pred HHHHhCCCeEEeccc-c---cc----ccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCc
Q 008014 350 LARYVNVPFVIADAT-T---LT----QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (581)
Q Consensus 350 LA~~l~~~fv~i~~s-~---l~----~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~ 421 (581)
+-+.....+-..-.. + ++ ...-.| ++.+. . ...-.+..|||.|||+|+|+.-
T Consensus 354 VLntAplAI~TTGRGSSGVGLTAAVTtD~eTG---ERRLE----A--GAMVLADRGVVCIDEFDKMsDi----------- 413 (818)
T KOG0479|consen 354 VLNTAPLAIATTGRGSSGVGLTAAVTTDQETG---ERRLE----A--GAMVLADRGVVCIDEFDKMSDI----------- 413 (818)
T ss_pred HHhcccccccccCCCCCCccceeEEeeccccc---hhhhh----c--CceEEccCceEEehhcccccch-----------
Confidence 876542211100000 0 00 000111 11110 0 0112257899999999999865
Q ss_pred hhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCc
Q 008014 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (581)
Q Consensus 422 ~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~ 501 (581)
-.-++.++||..+|+|...|.-.. + ..++-++++.|... | +.-.+..|.
T Consensus 414 ---DRvAIHEVMEQqtVTIaKAGIHas-------L-NARCSVlAAANPvy-------G---~Yd~~k~P~---------- 462 (818)
T KOG0479|consen 414 ---DRVAIHEVMEQQTVTIAKAGIHAS-------L-NARCSVLAAANPVY-------G---QYDQSKTPM---------- 462 (818)
T ss_pred ---hHHHHHHHHhcceEEeEeccchhh-------h-ccceeeeeecCccc-------c---ccCCCCChh----------
Confidence 466899999999999866553221 1 22355667766431 1 111122221
Q ss_pred hHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHh
Q 008014 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (581)
Q Consensus 502 ~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~ 550 (581)
.+.++...+++||+.+....+--..+..+.+.
T Consensus 463 -----------------eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iS 494 (818)
T KOG0479|consen 463 -----------------ENIGLPDSLLSRFDLLFVVLDDIDADIDRMIS 494 (818)
T ss_pred -----------------hccCCcHHHHhhhcEEEEEeccccchHHHHHH
Confidence 23468889999999887666654455545444
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=3.1e-05 Score=82.28 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=52.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccc--hhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|||||+||.++|+.+ +..++.++..++... +... +........+. ......+|+||++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~------~l~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNNDKELEEVYD------LLINCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHH------HhccCCEEEEeccC
Confidence 689999999999999999999887 556666666654320 0000 00000000000 01345799999987
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... +..++.|..+++
T Consensus 257 ~e~~t------------~~~~~~Lf~iin 273 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLIN 273 (329)
T ss_pred CCCCC------------HHHHHHHHHHHH
Confidence 75432 116778888888
No 250
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=4.2e-05 Score=91.72 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=86.8
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccccc---------cccccchh--------
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ---------AGYVGEDV-------- 376 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~---------~gyvGe~~-------- 376 (581)
+..+++++++.++++.-+ |+||+||||||+...|=+.++. --+.+|..++.. .+.|++++
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence 567899999999999877 9999999999999999999943 356777777543 34444432
Q ss_pred h-----------hHHHHHhhhhhh-h--------------------------------HHhhccCeEEehhhhhhhhhhh
Q 008014 377 E-----------SILYKLLTVSDY-N--------------------------------VAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 377 ~-----------~~l~~lf~~a~~-~--------------------------------l~~a~~~ILfIDEID~l~~~r~ 412 (581)
+ ..+.+..+.++. . ..-..|.||+|||+-++...
T Consensus 1082 ENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs-- 1159 (1228)
T KOG0055|consen 1082 ENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS-- 1159 (1228)
T ss_pred HHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh--
Confidence 0 011111111100 0 01146999999998887765
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg 467 (581)
++.+.||++|-++++|.++.+ -.|+...+-++..|.++-.|
T Consensus 1160 -------eSErvVQeALd~a~~gRT~Iv-------IAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1160 -------ESERVVQEALDRAMEGRTTIV-------IAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred -------hhHHHHHHHHHHhhcCCcEEE-------EecchhhhhcCCEEEEEECC
Confidence 223459999999999865443 23444444445555554444
No 251
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.9e-05 Score=85.20 Aligned_cols=134 Identities=29% Similarity=0.462 Sum_probs=95.8
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~ 409 (581)
+.+++++||||||||+++++++.. +..+..+++.+.. .+|.|+. +..++..+..+.. ..++++++||+|.+.+
T Consensus 18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~~ 90 (494)
T COG0464 18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALAP 90 (494)
T ss_pred CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhccc
Confidence 478999999999999999999998 6655667777666 5688887 6777788777653 4569999999999999
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCC
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGF 487 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF 487 (581)
.+.. ......+.+...|+..|++.. ... ++++..++..+ ++.+. +.++++..+.+
T Consensus 91 ~~~~---~~~~~~~~v~~~l~~~~d~~~-------------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 91 KRSS---DQGEVERRVVAQLLALMDGLK-------------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred Cccc---cccchhhHHHHHHHHhccccc-------------------CCc-eEEEeecCCccccChhHhCccccceeeec
Confidence 8765 233344558999999999531 112 33343444444 44333 34577777777
Q ss_pred CChhhh
Q 008014 488 GAPVRA 493 (581)
Q Consensus 488 ~~P~~e 493 (581)
..|+.+
T Consensus 148 ~~~~~~ 153 (494)
T COG0464 148 NLPDEA 153 (494)
T ss_pred CCCCHH
Confidence 777765
No 252
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.86 E-value=7.9e-05 Score=76.32 Aligned_cols=49 Identities=33% Similarity=0.598 Sum_probs=38.7
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEeccccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l 366 (581)
..+++++++.++++.++ |.||+||||||+.|+|-+..... -+.++..++
T Consensus 14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i 65 (309)
T COG1125 14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI 65 (309)
T ss_pred ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence 35789999999999988 99999999999999998877321 244555443
No 253
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.85 E-value=2.6e-05 Score=80.75 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=70.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-C--eEEeccccccccccccchhhhHHHHHhhhh----hhh---HHhhccCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-P--FVIADATTLTQAGYVGEDVESILYKLLTVS----DYN---VAAAQQGIVY 400 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-~--fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a----~~~---l~~a~~~ILf 400 (581)
.++||+||+|||||++++.+-+.+.. . ...++++..+. ...+++..+.. ... ....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 78999999999999999887665532 3 23344443321 23333332221 110 1123466999
Q ss_pred ehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh
Q 008014 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (581)
Q Consensus 401 IDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr 480 (581)
||+++.-.++.-. .......|.++||.+-. .+....-.....++.++|+.+...-...+..|.
T Consensus 106 iDDlN~p~~d~yg--------tq~~iElLRQ~i~~~g~---------yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~ 168 (272)
T PF12775_consen 106 IDDLNMPQPDKYG--------TQPPIELLRQLIDYGGF---------YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRF 168 (272)
T ss_dssp EETTT-S---TTS----------HHHHHHHHHHHCSEE---------ECTTTTEEEEECSEEEEEEESSTTT--SHHHHH
T ss_pred ecccCCCCCCCCC--------CcCHHHHHHHHHHhcCc---------ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHH
Confidence 9999887665211 11255677788883221 222222234566788888877544333344443
Q ss_pred cc--cCCCCCChhhhh
Q 008014 481 QD--SSIGFGAPVRAN 494 (581)
Q Consensus 481 fd--~~IgF~~P~~e~ 494 (581)
.. ..+.++.|+.+.
T Consensus 169 ~r~f~i~~~~~p~~~s 184 (272)
T PF12775_consen 169 LRHFNILNIPYPSDES 184 (272)
T ss_dssp HTTEEEEE----TCCH
T ss_pred hhheEEEEecCCChHH
Confidence 32 246666776664
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.5e-05 Score=80.11 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=53.3
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccc-cchhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYV-GEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyv-Ge~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
..+++|+||||||||.||-+|+..+ |..+..+..+++... .+- |.. +..+... ...-.+|+||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~---------l~~~dlLIiD 174 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRE---------LKKVDLLIID 174 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHH---------hhcCCEEEEe
Confidence 4699999999999999999999877 567777777765420 000 111 1112121 1345799999
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
|+........ ..+.+++++.
T Consensus 175 DlG~~~~~~~------------~~~~~~q~I~ 194 (254)
T COG1484 175 DIGYEPFSQE------------EADLLFQLIS 194 (254)
T ss_pred cccCccCCHH------------HHHHHHHHHH
Confidence 9888654311 4556666666
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.84 E-value=4.2e-05 Score=78.70 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCCe--EEeccccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF--VIADATTL 366 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~f--v~i~~s~l 366 (581)
..++|+|++.+.++.++ |+|++||||||++|+|.+...... +.+++.++
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i 77 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI 77 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch
Confidence 35789999999999999 999999999999999998874322 34454443
No 256
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.83 E-value=7.1e-05 Score=77.32 Aligned_cols=127 Identities=24% Similarity=0.374 Sum_probs=71.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-C--CCeEEecccc---------------------ccccccccchhhhHHHHHhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-N--VPFVIADATT---------------------LTQAGYVGEDVESILYKLLTV 386 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-~--~~fv~i~~s~---------------------l~~~gyvGe~~~~~l~~lf~~ 386 (581)
.|++++||+|+||-|.+.++-+++ | .+=+.+...+ +++++ .|....-.+++++..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-aG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-AGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-cCcccHHHHHHHHHH
Confidence 699999999999999999998776 2 1111111111 11111 222212233333222
Q ss_pred ----hhhhH-HhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcE
Q 008014 387 ----SDYNV-AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDI 461 (581)
Q Consensus 387 ----a~~~l-~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsni 461 (581)
..... .+..-.+|+|.|+|+++.+ .|.+|.+-||.. ..+=++
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY-------------------s~~~Rl 160 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY-------------------SSNCRL 160 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH-------------------hcCceE
Confidence 11111 1123569999999999988 899999999932 111123
Q ss_pred EEEecCCCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 462 LFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 462 i~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
+++|.+. ..+-++++.|.+ .|..+.|..++
T Consensus 161 Il~cns~-SriIepIrSRCl--~iRvpaps~ee 190 (351)
T KOG2035|consen 161 ILVCNST-SRIIEPIRSRCL--FIRVPAPSDEE 190 (351)
T ss_pred EEEecCc-ccchhHHhhhee--EEeCCCCCHHH
Confidence 3344333 235667776654 45566676554
No 257
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.80 E-value=0.00011 Score=83.42 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=67.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHh----------CCCeEEecccccccc---------ccccchhh-----hHHHHHhhhh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQA---------GYVGEDVE-----SILYKLLTVS 387 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l----------~~~fv~i~~s~l~~~---------gyvGe~~~-----~~l~~lf~~a 387 (581)
-+.+.|-||||||.+++.+-+.+ ..+++++++-.+... .+-|+... ..+..-|..
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~- 502 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV- 502 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc-
Confidence 44599999999999999998755 346789998877642 12222210 011111110
Q ss_pred hhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecC
Q 008014 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (581)
Q Consensus 388 ~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg 467 (581)
.-.+..++||+|||.|.|... -|..|..++|= .....+.+++|+-+
T Consensus 503 --~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdW------------------pt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 503 --PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDW------------------PTLKNSKLVVIAIA 548 (767)
T ss_pred --CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcC------------------CcCCCCceEEEEec
Confidence 012356889999999999875 47778888871 12234556677777
Q ss_pred CCcChHH
Q 008014 468 AFVDIEK 474 (581)
Q Consensus 468 n~~~Le~ 474 (581)
|.-++.+
T Consensus 549 NTmdlPE 555 (767)
T KOG1514|consen 549 NTMDLPE 555 (767)
T ss_pred ccccCHH
Confidence 7666433
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.79 E-value=4e-05 Score=88.88 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=39.4
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
++.+++++++.++++..+ ++|++|||||||+|.+.+.+.. --+.+|.-++
T Consensus 485 ~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl 537 (709)
T COG2274 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 (709)
T ss_pred CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeH
Confidence 457999999999988766 9999999999999999987732 1344555543
No 259
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.78 E-value=0.00024 Score=74.15 Aligned_cols=62 Identities=26% Similarity=0.453 Sum_probs=46.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
-.|||-.|.+.....+. .+..+. +..+.+|+.|+||||||.+|-.+++.+|
T Consensus 41 GmVGQ~~AR~Aagvi~k----mi~egk-----------------------iaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILK----MIREGK-----------------------IAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred cchhhHHHHHHhHHHHH----HHHcCc-----------------------ccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 47999999887765553 221111 2336889999999999999999999996
Q ss_pred CCeEEeccccc
Q 008014 356 VPFVIADATTL 366 (581)
Q Consensus 356 ~~fv~i~~s~l 366 (581)
.||..+.++++
T Consensus 94 tpF~~i~gSEI 104 (454)
T KOG2680|consen 94 TPFTSISGSEI 104 (454)
T ss_pred Cceeeeeccee
Confidence 58888888874
No 260
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.00017 Score=79.36 Aligned_cols=135 Identities=19% Similarity=0.333 Sum_probs=85.3
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccccc---------cccccchh---------
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ---------AGYVGEDV--------- 376 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~---------~gyvGe~~--------- 376 (581)
-++++++++.+.++..+ |+||+|.||+|+.|.+-+..+. --+.+|+.++.. .|.|+++.
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~y 630 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILY 630 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeee
Confidence 46899999999999888 9999999999999999998854 346677766432 23333321
Q ss_pred ----------hhHHHHHhhhhhh---------------------------------hHHhhccCeEEehhhhhhhhhhhh
Q 008014 377 ----------ESILYKLLTVSDY---------------------------------NVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 377 ----------~~~l~~lf~~a~~---------------------------------~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
...+...-+.+.. ...-++|+||++||+.++...
T Consensus 631 NIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT--- 707 (790)
T KOG0056|consen 631 NIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT--- 707 (790)
T ss_pred heeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC---
Confidence 0000000000000 012257999999998877653
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCC
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn 468 (581)
...+.+|.+|-++-.+++..| -.|+-..++++.-+++|-.|.
T Consensus 708 ------~tER~IQaaL~rlca~RTtIV-------vAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 708 ------NTERAIQAALARLCANRTTIV-------VAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred ------ccHHHHHHHHHHHhcCCceEE-------EeeeehheecccEEEEEeCCe
Confidence 122348888888888665433 245555567777777766554
No 261
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.68 E-value=5.4e-05 Score=76.87 Aligned_cols=36 Identities=33% Similarity=0.621 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.++++|++++.++.++ |+|++|||||||+|+++...
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 3789999999999999 99999999999999999655
No 262
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.68 E-value=0.00035 Score=73.25 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=67.3
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
.+.|..--.+.-||...|++.|..+-. +....++ ....++||+|+++.|||+++
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~---------------------~Rmp~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEE-----LLEYPKR---------------------HRMPNLLIVGDSNNGKTMII 78 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHH-----HHhCCcc---------------------cCCCceEEecCCCCcHHHHH
Confidence 334555555678999999998775543 1111111 12268999999999999999
Q ss_pred HHHHHHhC---------CCeEEeccccccc----------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 348 KTLARYVN---------VPFVIADATTLTQ----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 348 raLA~~l~---------~~fv~i~~s~l~~----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
+.+.+... .|++.+++..-.. .-++.........+........+......+|+|||++.+.
T Consensus 79 ~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 79 ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 99987662 3666666643211 0011110011111111122223344567899999999976
Q ss_pred hh
Q 008014 409 KK 410 (581)
Q Consensus 409 ~~ 410 (581)
..
T Consensus 159 aG 160 (302)
T PF05621_consen 159 AG 160 (302)
T ss_pred cc
Confidence 53
No 263
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.67 E-value=0.00011 Score=74.55 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=48.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.+..+.||+|||||+++|.+|+.+|.+++.++|++-.+ ...+.+++.-. ...+..+.+||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 34568999999999999999999999999999988553 22333333221 135679999999999876
No 264
>PRK06921 hypothetical protein; Provisional
Probab=97.66 E-value=0.00012 Score=75.61 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=27.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh----CCCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l----~~~fv~i~~s~ 365 (581)
.+++|+|+||||||+||.++|+.+ +..++.++..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 679999999999999999999876 34455555444
No 265
>PF05729 NACHT: NACHT domain
Probab=97.65 E-value=0.0007 Score=62.40 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-+++.|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 36799999999999999998666
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.65 E-value=0.00018 Score=65.76 Aligned_cols=32 Identities=50% Similarity=0.639 Sum_probs=25.5
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
++++||||+|||++++.++... +.+.+.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998776 4555555554
No 267
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.60 E-value=0.00011 Score=82.14 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.++++++++++++..+ ++||+|+|||||++++++.+
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999777 99999999999999999877
No 268
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.59 E-value=8.2e-05 Score=78.31 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=43.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||+|||||.||.++|+.+ +.+...+...++... +...-....+.+.+.. .....+|+|||+..-
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~-lk~~~~~~~~~~~l~~------l~~~dlLiIDDiG~e 229 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE-LKNSISDGSVKEKIDA------VKEAPVLMLDDIGAE 229 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH-HHHHHhcCcHHHHHHH------hcCCCEEEEecCCCc
Confidence 689999999999999999999888 566666666554310 0000000001111111 135679999998765
Q ss_pred h
Q 008014 408 T 408 (581)
Q Consensus 408 ~ 408 (581)
.
T Consensus 230 ~ 230 (306)
T PRK08939 230 Q 230 (306)
T ss_pred c
Confidence 3
No 269
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00037 Score=72.90 Aligned_cols=88 Identities=23% Similarity=0.158 Sum_probs=53.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc--------ccc---cccc---cccchhhhHHHHHhhhhhhhHHhhcc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA--------TTL---TQAG---YVGEDVESILYKLLTVSDYNVAAAQQ 396 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~--------s~l---~~~g---yvGe~~~~~l~~lf~~a~~~l~~a~~ 396 (581)
...||+||.|+||+++|..+|+.+-..-..-.| .|+ .+.+ .++. ..++++.......-..+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i---dqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI---ETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH---HHHHHHHHHHhhCccCCCc
Confidence 467799999999999999999877321000011 011 0000 1111 1233333222211122456
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.|++||++|+|+.+ .+++||+.||+
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc
Confidence 79999999999988 89999999994
No 270
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.00024 Score=85.46 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=41.9
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEecccccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLT 367 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~ 367 (581)
+...++++++.++.+..+ |+||+||||||+.+.|.++++.. -+.+++.++.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccch
Confidence 467899999999999877 99999999999999999999543 2556666543
No 271
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.57 E-value=0.00032 Score=78.90 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=27.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+-+||+|||||||||++++||++++..+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 34569999999999999999999988777653
No 272
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0011 Score=69.31 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=66.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCe--EEecccc------cc---ccc--cc---cchh-hhHHHHHhhhhhhhHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPF--VIADATT------LT---QAG--YV---GEDV-ESILYKLLTVSDYNVAA 393 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~f--v~i~~s~------l~---~~g--yv---Ge~~-~~~l~~lf~~a~~~l~~ 393 (581)
..+||+|| +||+++|+.+|+.+-..- -.-.|.. +. .++ ++ |..+ -..++++.......-..
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 46789996 689999999998762210 0001100 00 011 11 1100 12334433322211122
Q ss_pred hccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEE-ecCCCcCh
Q 008014 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI-CGGAFVDI 472 (581)
Q Consensus 394 a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I-~tgn~~~L 472 (581)
+...|++||++|+|+.. ..|+||+.||+- ..++++| ++.+...+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEEP---------------------p~~t~~iL~t~~~~~l 147 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEEP---------------------QSEIYIFLLTNDENKV 147 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcCC---------------------CCCeEEEEEECChhhC
Confidence 45679999999999987 899999999941 2223334 44454556
Q ss_pred HHHHHhhhcccCCCCCC
Q 008014 473 EKTISERRQDSSIGFGA 489 (581)
Q Consensus 473 e~~l~~rrfd~~IgF~~ 489 (581)
-..++.|.+ .+.|+.
T Consensus 148 LpTI~SRcq--~i~f~~ 162 (290)
T PRK07276 148 LPTIKSRTQ--IFHFPK 162 (290)
T ss_pred chHHHHcce--eeeCCC
Confidence 667777653 455644
No 273
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=7.3e-05 Score=66.44 Aligned_cols=31 Identities=45% Similarity=0.761 Sum_probs=26.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
|++.|+||+||||+|+.||+.++.+++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6799999999999999999999877654433
No 274
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00064 Score=74.15 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=49.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC-----CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN-----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~-----~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
.+++|+||+|.|||.|+++++.... ..++.++..++.. .++-. ...+..+..+.. ..-.+|+||+|+
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v~a----~~~~~~~~Fk~~---y~~dlllIDDiq 185 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFVKA----LRDNEMEKFKEK---YSLDLLLIDDIQ 185 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HHHHH----HHhhhHHHHHHh---hccCeeeechHh
Confidence 5788999999999999999987772 2344444433321 11110 001111111111 144699999999
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
.+..+. +.|.+|...+.
T Consensus 186 ~l~gk~------------~~qeefFh~FN 202 (408)
T COG0593 186 FLAGKE------------RTQEEFFHTFN 202 (408)
T ss_pred HhcCCh------------hHHHHHHHHHH
Confidence 998762 15666666555
No 275
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.51 E-value=0.00014 Score=82.31 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++||+|+|||||++.|++.+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999998777 99999999999999999887
No 276
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.48 E-value=0.00017 Score=68.13 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=35.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC-
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~- 357 (581)
++|.++..+.+...+. . . ....+..++++|++|+|||++++.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~----~----~---------------------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD----A----A---------------------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -TT-HHHHHHHHHTTG----G----T---------------------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH----H----H---------------------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5888988888877662 0 0 00123688999999999999999887665322
Q ss_pred --eEEeccccc
Q 008014 358 --FVIADATTL 366 (581)
Q Consensus 358 --fv~i~~s~l 366 (581)
++.+++...
T Consensus 53 ~~~~~~~~~~~ 63 (185)
T PF13191_consen 53 GYVISINCDDS 63 (185)
T ss_dssp --EEEEEEETT
T ss_pred CEEEEEEEecc
Confidence 666666554
No 277
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.47 E-value=0.00031 Score=77.64 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=68.0
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCC---------CCCCCCCCCCCCcccccCccEE-EEC
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGE---------SSSCTTDGVDDDTVELEKSNIL-LMG 337 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~---------~~~~~~~~l~~v~~~v~~~~VL-L~G 337 (581)
.+.+...+++. ++-..+-++|.+++.. ++........+.|.+. .++.+.+.++++++.+.++..| +.|
T Consensus 292 id~aI~~Wkq~-~~Ar~s~~Rl~~lL~~-~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 292 IDLAIANWKQF-VAARQSYKRLNELLAE-LPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHh-CccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEEC
Confidence 34455555553 5556666667766641 1111111111111111 2334567899999999999999 999
Q ss_pred CCCCChHHHHHHHHHHhC--CCeEEeccccccc---------cccccchh
Q 008014 338 PTGSGKTLLAKTLARYVN--VPFVIADATTLTQ---------AGYVGEDV 376 (581)
Q Consensus 338 PPGTGKTtLAraLA~~l~--~~fv~i~~s~l~~---------~gyvGe~~ 376 (581)
|+|+|||||||++....- .--+++|..++.+ .||..+++
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 999999999999987762 2347788888764 46666654
No 278
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.42 E-value=0.00018 Score=67.17 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=50.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~ 395 (581)
.+++++++.+.++.++ +.||+|+||||++++++...... -+.++.. ...+|+.+--.... +....++. -..+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~lS~G~~-~rv~lara--l~~~ 88 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQLSGGEK-MRLALAKL--LLEN 88 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEccCCHHHH-HHHHHHHH--HhcC
Confidence 3688899999998777 99999999999999999876321 1222221 11223332101111 11122221 2357
Q ss_pred cCeEEehhhhhh
Q 008014 396 QGIVYIDEVDKI 407 (581)
Q Consensus 396 ~~ILfIDEID~l 407 (581)
|.++++||-..-
T Consensus 89 p~illlDEP~~~ 100 (144)
T cd03221 89 PNLLLLDEPTNH 100 (144)
T ss_pred CCEEEEeCCccC
Confidence 899999996543
No 279
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00046 Score=65.83 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ +.||+|+|||||.++++...
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999888 99999999999999999876
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.39 E-value=0.00058 Score=77.13 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=39.9
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
+..+++++++.++++..+ ++||+|+||||+++.+.+.+.. --+.+++.++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 346899999999999888 9999999999999999998853 1233455444
No 281
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0013 Score=67.94 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=68.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccc------ccc---cc--cc-cc--hh-hhHHHHHhhhhhh-hHHhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT------LTQ---AG--YV-GE--DV-ESILYKLLTVSDY-NVAAA 394 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~------l~~---~g--yv-Ge--~~-~~~l~~lf~~a~~-~l~~a 394 (581)
..+||+||.|+||..+|.++|+.+-..--.-.|.. +.. ++ ++ .+ .+ ...++++...... .+...
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 56789999999999999999987621100001111 000 00 10 00 00 1222333222111 01123
Q ss_pred ccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecC-CCcChH
Q 008014 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-AFVDIE 473 (581)
Q Consensus 395 ~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg-n~~~Le 473 (581)
...|++||++|+|... ..++||+.||+ ...++++|..+ +...+-
T Consensus 88 ~~KV~II~~ae~m~~~--------------AaNaLLK~LEE---------------------Pp~~t~fiLit~~~~~lL 132 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQ--------------SANSLLKLIEE---------------------PPKNTYGIFTTRNENNIL 132 (261)
T ss_pred CCEEEEeccHhhhCHH--------------HHHHHHHhhcC---------------------CCCCeEEEEEECChHhCc
Confidence 4679999999999988 89999999994 12234444444 444466
Q ss_pred HHHHhhhcccCCCCCCh
Q 008014 474 KTISERRQDSSIGFGAP 490 (581)
Q Consensus 474 ~~l~~rrfd~~IgF~~P 490 (581)
..++.|.+ .+.|+.+
T Consensus 133 pTI~SRCq--~~~~~~~ 147 (261)
T PRK05818 133 NTILSRCV--QYVVLSK 147 (261)
T ss_pred hHhhhhee--eeecCCh
Confidence 77777754 3445555
No 282
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.36 E-value=0.00019 Score=67.24 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=28.4
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
+..++|+|+|||||||+|+.||+.++.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35788999999999999999999999888743
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.35 E-value=0.00061 Score=65.12 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999988777 99999999999999999876
No 284
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.34 E-value=0.00047 Score=70.69 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=46.6
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCC------eEEeccc---cc---cc-------cccccchhhh---HHHHHhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TL---TQ-------AGYVGEDVES---ILYKLLTVS 387 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~------fv~i~~s---~l---~~-------~gyvGe~~~~---~l~~lf~~a 387 (581)
...++|.||+||||||+++.+++..... ++.+... ++ .. ..-.++.... ..+...+.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3577899999999999999999877432 2221111 10 00 0001111111 222334444
Q ss_pred hhhHHhhccCeEEehhhhhhhhh
Q 008014 388 DYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 388 ~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
........+.+||+||+.+++..
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhh
Confidence 43333456779999999999876
No 285
>PRK10536 hypothetical protein; Provisional
Probab=97.34 E-value=0.0017 Score=67.07 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999874
No 286
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.34 E-value=0.00045 Score=65.68 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999777 99999999999999999876
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.34 E-value=0.00042 Score=80.21 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++|++|+|||||++.+++.+
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999988776 99999999999999999877
No 288
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.33 E-value=0.00027 Score=68.69 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=32.1
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
...++++++.+.++..+ +.||+|||||++.|++|...
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34678899999888666 99999999999999999766
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0026 Score=66.91 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=52.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-----------C--eEEeccccccccccccchh-hhHHHHHhhhhhhhH-Hhhc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQAGYVGEDV-ESILYKLLTVSDYNV-AAAQ 395 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-----------~--fv~i~~s~l~~~gyvGe~~-~~~l~~lf~~a~~~l-~~a~ 395 (581)
...||+|+.|.||+++|+.+++.+-. | +..++. .|..+ -..++.+.+...... ....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~--------~g~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI--------FDKDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc--------CCCcCCHHHHHHHHHHhccCCcccCC
Confidence 34569999999999999999987611 1 111210 01111 123344433332211 1136
Q ss_pred cCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
..|++||++|++... .+++||+.||+
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 789999999999876 89999999994
No 290
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.26 E-value=0.00034 Score=87.09 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=87.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccc-cccccchhhhHHHH-HhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYK-LLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~-~gyvGe~~~~~l~~-lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
-++||.||+|+|||.+++-+|+..+..+++++-.+.++ ..|+|.-......+ .|......-+...+..+++||++...
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 38999999999999999999999999999998887553 23444211000000 01100001122467899999999998
Q ss_pred hhhhhcccCCCCchhhHHHHHHHHHhC-ceeeecCCCcccCCCCCceeeccCcEEE
Q 008014 409 KKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKDILF 463 (581)
Q Consensus 409 ~~r~~~~~~~d~~~~~vq~aLL~lLEg-~~v~ipe~g~~~~~~~~~ivI~tsnii~ 463 (581)
.+ +..+|.++++. +.+.+|+..+....+..++...|.|..-
T Consensus 521 ~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~ 562 (1856)
T KOG1808|consen 521 HD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPG 562 (1856)
T ss_pred hH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcc
Confidence 77 89999999996 8899999999888888888888888743
No 291
>PLN03130 ABC transporter C family member; Provisional
Probab=97.26 E-value=0.00076 Score=85.08 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=38.3
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~ 365 (581)
..+|+++++.++++..+ ++|++|+|||||+++|.+.+.. --+.+++-+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d 1302 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD 1302 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe
Confidence 36899999999999777 9999999999999999987732 124445444
No 292
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00026 Score=67.89 Aligned_cols=32 Identities=44% Similarity=0.717 Sum_probs=29.3
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.|+++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887764
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.25 E-value=0.00072 Score=64.43 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ +.||+|+|||||+++++..+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999777 99999999999999999876
No 294
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.24 E-value=0.0012 Score=72.28 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=60.8
Q ss_pred CccEEEECCCCCChHHHHHHHHHH--h-CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARY--V-NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~--l-~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~ 406 (581)
..|+++.||+|||||.+|.+++.. + ..-+ ++. ...+.++-...-. .-....+|+|||+..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f--~T~-------------a~Lf~~L~~~~lg--~v~~~DlLI~DEvgy 271 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGT--ITV-------------AKLFYNISTRQIG--LVGRWDVVAFDEVAT 271 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCc--CcH-------------HHHHHHHHHHHHh--hhccCCEEEEEcCCC
Confidence 379999999999999999998765 2 1111 111 2222222111101 114567999999998
Q ss_pred hhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 407 l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
+.-.+. +..++.|...|+.+..+. .. ...+.+.-+++-||.+.
T Consensus 272 lp~~~~----------~~~v~imK~yMesg~fsR---------G~---~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 272 LKFAKP----------KELIGILKNYMESGSFTR---------GD---ETKSSDASFVFLGNVPL 314 (449)
T ss_pred CcCCch----------HHHHHHHHHHHHhCceec---------cc---eeeeeeeEEEEEcccCC
Confidence 765422 126788888899554431 11 12245566667777654
No 295
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0013 Score=65.34 Aligned_cols=37 Identities=27% Similarity=0.650 Sum_probs=32.4
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..++.++++.+.++..+ +.||+|||||||...+|.+.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 34678899999988777 89999999999999999776
No 296
>PLN03232 ABC transporter C family member; Provisional
Probab=97.24 E-value=0.0008 Score=84.36 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999777 99999999999999999877
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.23 E-value=0.00058 Score=85.36 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~ 356 (581)
++|+++++.++++..+ |+||+||||||+++.|.+.+..
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999877 9999999999999999998864
No 298
>PRK13947 shikimate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=66.39 Aligned_cols=32 Identities=38% Similarity=0.596 Sum_probs=28.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
+|+|.|+||||||++|+.||+.++.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 68999999999999999999999999975543
No 299
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.20 E-value=0.00078 Score=78.15 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..++++++++++++..+ ++||+|+|||||++.|++.+
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45899999999888666 99999999999999999877
No 300
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.20 E-value=0.00078 Score=77.89 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++|++|+|||||++.+++.+
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999988777 99999999999999999877
No 301
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.20 E-value=0.00078 Score=78.13 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=37.6
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~ 365 (581)
..+++++++.++++..+ ++||+|+|||||+++|++.+.. --+.++..+
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 45899999999988666 9999999999999999987732 234454443
No 302
>PHA00729 NTP-binding motif containing protein
Probab=97.19 E-value=0.00044 Score=69.90 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 303
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00023 Score=76.24 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=34.6
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+..+++++++.+.++.++ |.||+||||||+.|+||.+-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999 99999999999999999766
No 304
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.17 E-value=0.0012 Score=76.55 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++|++|+|||||++.+++.+
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999988655 99999999999999999877
No 305
>PRK07261 topology modulation protein; Provisional
Probab=97.17 E-value=0.00088 Score=64.42 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=29.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
.++++|+||+||||+|+.|++.++.+.+..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4789999999999999999999998887766543
No 306
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.16 E-value=0.0014 Score=74.23 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=37.7
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~ 365 (581)
..+++++++.++++..+ ++|++|+|||||+++|++.+.. --+.++..+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 45899999999888766 9999999999999999988732 224455443
No 307
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.15 E-value=0.00055 Score=66.01 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998877
No 308
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0023 Score=69.72 Aligned_cols=136 Identities=17% Similarity=0.279 Sum_probs=85.8
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEeccccccc---------cccccchh--------
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV-------- 376 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~~---------~gyvGe~~-------- 376 (581)
..+.+.++++.++.+..+ ++||+|+||+|+.|.+-++++.. -+.++..++.+ .|.++++.
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~ 354 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIA 354 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHH
Confidence 456788999999988877 99999999999999999999543 36666666532 12222210
Q ss_pred ---------------hh-----HHHHHhhhhhh------------------------hHHhhccCeEEehhhhhhhhhhh
Q 008014 377 ---------------ES-----ILYKLLTVSDY------------------------NVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 377 ---------------~~-----~l~~lf~~a~~------------------------~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
.. .+...++..+. ...-+.|.|+++||+-+......
T Consensus 355 yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~t 434 (497)
T COG5265 355 YNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434 (497)
T ss_pred HHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhH
Confidence 00 00000000000 01225799999999988776532
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCC
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn 468 (581)
. +.+|.+|..+-.|++..+ ..|+-..++++..++++-.|.
T Consensus 435 e---------~~iq~~l~~~~~~rttlv-------iahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 435 E---------QAIQAALREVSAGRTTLV-------IAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred H---------HHHHHHHHHHhCCCeEEE-------EeehhhhccCCceEEEeeCCE
Confidence 1 237888887777765543 355556677777777766553
No 309
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.14 E-value=0.00045 Score=63.71 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+++|+|+||+||||+|+.||+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998887444
No 310
>PRK03839 putative kinase; Provisional
Probab=97.14 E-value=0.0004 Score=66.59 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.|+|.|+||+||||+++.||+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999886543
No 311
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00085 Score=70.44 Aligned_cols=37 Identities=27% Similarity=0.624 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++.+.++ |.||+|+||||+.|+||...
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 34678899999999999 99999999999999999766
No 312
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.13 E-value=0.0013 Score=82.54 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=38.9
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
..+|+++++.++++..+ ++|++|+|||||+++|.+.+.. --+.+++.++
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI 1350 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEc
Confidence 46899999999999777 9999999999999999987732 1244555443
No 313
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0012 Score=61.97 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.|++|+||||++++|+..+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688899999988777 999999999999999998763
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.11 E-value=0.0007 Score=65.83 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=47.2
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccccccccccchh--hhHHHHHhhhhhhhHHhh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGEDV--ESILYKLLTVSDYNVAAA 394 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~~gyvGe~~--~~~l~~lf~~a~~~l~~a 394 (581)
+++++ +.++++.++ |.||+|+|||||+++++..... --+.++... .+|+.+.. ..-.++.+..++ .-..
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~~LSgGq~qrv~lar--al~~ 88 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYIDLSGGELQRVAIAA--ALLR 88 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccCCCCHHHHHHHHHHH--HHhc
Confidence 34443 677777777 9999999999999999987622 123333322 12332221 111122222222 1235
Q ss_pred ccCeEEehhhhhhh
Q 008014 395 QQGIVYIDEVDKIT 408 (581)
Q Consensus 395 ~~~ILfIDEID~l~ 408 (581)
.|.++++||-..-.
T Consensus 89 ~p~lllLDEPts~L 102 (177)
T cd03222 89 NATFYLFDEPSAYL 102 (177)
T ss_pred CCCEEEEECCcccC
Confidence 78999999965443
No 315
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0015 Score=66.60 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=35.5
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.-.+|+++++++.++..+ |.|++|+|||||.|.||..+.
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 345899999999999999 999999999999999998873
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.10 E-value=0.0011 Score=75.30 Aligned_cols=36 Identities=36% Similarity=0.661 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++..+ ++|++|+|||||++.+++.+
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4799999999988777 99999999999999999877
No 317
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.0017 Score=65.93 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=45.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC--------CCeEEeccccccccccccchhhhHHHHHhhhhhh---------hHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN--------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY---------NVAA 393 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~--------~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~---------~l~~ 393 (581)
.+.|+.|||||||||+.|-||+.+. ..+..++-..-...+..|...-. .-.-.+..+. .+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~-~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHG-RGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhh-hhhhhhhcccchHHHHHHHHHHh
Confidence 5789999999999999999998873 23444554432212333332110 0000111111 1344
Q ss_pred hccCeEEehhhhhhh
Q 008014 394 AQQGIVYIDEVDKIT 408 (581)
Q Consensus 394 a~~~ILfIDEID~l~ 408 (581)
..|.|+++|||....
T Consensus 217 m~PEViIvDEIGt~~ 231 (308)
T COG3854 217 MSPEVIIVDEIGTEE 231 (308)
T ss_pred cCCcEEEEeccccHH
Confidence 679999999988764
No 318
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.10 E-value=0.0006 Score=77.13 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=43.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-CC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-~~ 356 (581)
++.|++++++.+.+.+...... .. ..+.-++|+||||+|||+||+.||+.+ ..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~g----l~----------------------~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQG----LE----------------------EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHh----cC----------------------CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 4799999999998887422221 11 122456699999999999999999877 34
Q ss_pred CeEEecc
Q 008014 357 PFVIADA 363 (581)
Q Consensus 357 ~fv~i~~ 363 (581)
+++.+.+
T Consensus 131 ~~Y~~kg 137 (644)
T PRK15455 131 PIYVLKA 137 (644)
T ss_pred cceeecC
Confidence 6666654
No 319
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.0011 Score=72.12 Aligned_cols=81 Identities=16% Similarity=0.326 Sum_probs=47.4
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHhCC-----C-eEEeccc---cccc-----------cccccchhhhHH---HHHhh
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYVNV-----P-FVIADAT---TLTQ-----------AGYVGEDVESIL---YKLLT 385 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l~~-----~-fv~i~~s---~l~~-----------~gyvGe~~~~~l---~~lf~ 385 (581)
.....+++||||||||||++.|++.... . ++.+... ++.+ +.+ -+.+...+ ...++
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHH
Confidence 3457889999999999999999976632 1 2211111 0000 000 01112222 23444
Q ss_pred hhhhhHHhhccCeEEehhhhhhhhh
Q 008014 386 VSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 386 ~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.+..........+||||||.+++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHHH
Confidence 5554444557789999999999876
No 320
>PRK00625 shikimate kinase; Provisional
Probab=97.07 E-value=0.00053 Score=66.46 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+|+|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999997665
No 321
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.04 E-value=0.0016 Score=74.03 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=37.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
.+++++++.++++..+ ++|++|+|||||++.+++.+.. --+.++..++
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 4799999999988777 9999999999999999988732 1244555443
No 322
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.04 E-value=0.0028 Score=62.33 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=46.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccccchhhhHHHHHhhhhhhhH-----HhhccCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNV-----AAAQQGIV 399 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyvGe~~~~~l~~lf~~a~~~l-----~~a~~~IL 399 (581)
+-+++.||||||||++++.+.+.+ +..++.+..+.-... .-.|.. ...+...+....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 356689999999999999998666 445554444321100 000000 011111111111100 02345799
Q ss_pred EehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 400 fIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+|||+..+... ....|+...+
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999998766 5666666665
No 323
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.00052 Score=70.70 Aligned_cols=38 Identities=37% Similarity=0.580 Sum_probs=34.7
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..++++++++++++.++ +.||+|||||||.|++++.+.
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999998 999999999999999998773
No 324
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.03 E-value=0.00039 Score=63.30 Aligned_cols=24 Identities=54% Similarity=0.861 Sum_probs=22.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhCC
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
|++.||||+||||+|+.+++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 679999999999999999998873
No 325
>PRK13948 shikimate kinase; Provisional
Probab=97.00 E-value=0.00077 Score=65.92 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=31.8
Q ss_pred cccCccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 327 ~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
..++.+++|.|.+|+||||+++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 345578999999999999999999999999998665
No 326
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.00044 Score=73.75 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.+.++.++ |.||+||||||+.|+||...
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999877 99999999999999999765
No 327
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.99 E-value=0.0017 Score=70.80 Aligned_cols=88 Identities=17% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCcccccCcc-EEEECCCCCChHHHHHHHHHHhCCC------eEEeccc---cccc----------cccccchhhh---H
Q 008014 323 DDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---I 379 (581)
Q Consensus 323 ~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l~~~------fv~i~~s---~l~~----------~gyvGe~~~~---~ 379 (581)
++.+.+.++. ++++||+|+|||++++.+++.+... ++.+... ++.+ ..-.++.... .
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~v 239 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQV 239 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHH
Confidence 4555566554 5599999999999999999876332 2222111 1100 0001111111 1
Q ss_pred HHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 380 LYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 380 l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.....+.+..........||||||+.+++..
T Consensus 240 a~~v~e~Ae~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 240 AEMVIEKAKRLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEChhHHHHH
Confidence 2233334443344456779999999999875
No 328
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.002 Score=72.39 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=38.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
.++.+++++++++... |+|++||||||+..+|+..+.. --+.++..++
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 5788999999998777 9999999999999999987731 2345554443
No 329
>PRK14532 adenylate kinase; Provisional
Probab=96.97 E-value=0.00069 Score=65.30 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=25.3
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
++++.||||+||||+|+.||+.++.+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i 29 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL 29 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4889999999999999999999987665
No 330
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0022 Score=71.64 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=41.1
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC-eEEecccccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP-FVIADATTLT 367 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~-fv~i~~s~l~ 367 (581)
+..++++++++++++.=+ ++|++||||||+.|+|-++++.. =+.+++.++.
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik 416 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIK 416 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHh
Confidence 556899999999998666 99999999999999999988421 2556666654
No 331
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.97 E-value=0.011 Score=61.41 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
-.+.|.|+-|+|||++.+.+-+.+...
T Consensus 21 ~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 21 FVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455699999999999999998777433
No 332
>PHA02624 large T antigen; Provisional
Probab=96.97 E-value=0.0061 Score=69.41 Aligned_cols=128 Identities=21% Similarity=0.165 Sum_probs=71.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.-++|+||||||||+++.+|++.++...+.++++.-...=|.| . ....-+++||++..-...
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~--------p----------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG--------C----------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh--------h----------hhhceEEEeeeccccccc
Confidence 3556999999999999999999997666667654321000111 1 123458888987654442
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCc-eeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCC
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~-~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~ 488 (581)
..+...|.-. . -..-|...|||. .|++. .+ |...+.+... ..|.|+|---+...+.- ||...+.|.
T Consensus 494 ~~~Lp~G~~~-d--Nl~~lRn~LDG~V~v~ld----~K--H~n~~q~~~P--PlliT~Ney~iP~T~~~-Rf~~~~~F~ 560 (647)
T PHA02624 494 NKDLPSGQGM-N--NLDNLRDYLDGSVPVNLE----KK--HLNKRSQIFP--PGIVTMNEYLIPQTVKA-RFAKVLDFK 560 (647)
T ss_pred cccCCccccc-c--hhhHHHhhcCCCCccccc----hh--ccCchhccCC--CeEEeecCcccchhHHH-HHHHhcccc
Confidence 1111111110 0 136789999987 67662 11 2222233333 33557775556555543 455666664
No 333
>PRK14530 adenylate kinase; Provisional
Probab=96.96 E-value=0.0008 Score=66.64 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=26.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..++|.||||+||||+|+.||+.++.+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 47899999999999999999999987765
No 334
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.96 E-value=0.0014 Score=76.30 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++..+ ++||+|+||||+++.|++.+
T Consensus 495 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5899999999999777 99999999999999999887
No 335
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0019 Score=68.15 Aligned_cols=37 Identities=38% Similarity=0.741 Sum_probs=32.6
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
...++++++.++.+.++ +.|-+|+|||||+|++-+..
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 34678899999999988 99999999999999998765
No 336
>PRK13949 shikimate kinase; Provisional
Probab=96.95 E-value=0.00074 Score=64.93 Aligned_cols=32 Identities=44% Similarity=0.682 Sum_probs=28.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.+|+|+|+||+||||+++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999887654
No 337
>PRK06217 hypothetical protein; Validated
Probab=96.95 E-value=0.00079 Score=65.03 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.|+|.|+||+||||+|+.|++.++.+++..+-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 58999999999999999999999998876553
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.95 E-value=0.0022 Score=72.84 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++..+ ++||+|+|||||++.+++.+
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999777 99999999999999999877
No 339
>PTZ00243 ABC transporter; Provisional
Probab=96.93 E-value=0.0021 Score=81.04 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+|+++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~ 1360 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV 1360 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999998777 99999999999999999877
No 340
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.93 E-value=0.0023 Score=60.99 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
+|+.||||||||+++..++... +.+.+.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998886543 5566555543
No 341
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.92 E-value=0.0022 Score=72.70 Aligned_cols=37 Identities=30% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++..+ ++||+|+|||||++.|++.+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34789999999999777 99999999999999999876
No 342
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.91 E-value=0.0023 Score=63.93 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.1
Q ss_pred CCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 320 ~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+.+++++...+.-++|.||+|+|||++.|.++.
T Consensus 20 v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 20 VPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 456677777666677999999999999999974
No 343
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.89 E-value=0.00065 Score=68.24 Aligned_cols=35 Identities=29% Similarity=0.609 Sum_probs=32.4
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHH
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~ 352 (581)
-++|+++++.+.++.++ +.||+|+||||+.|+|..
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999988 999999999999999974
No 344
>PRK06762 hypothetical protein; Provisional
Probab=96.88 E-value=0.0012 Score=62.24 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
.-++|.|+||+||||+|+.+++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 346799999999999999999998655665655443
No 345
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.88 E-value=0.00097 Score=60.77 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=27.1
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+++.|+|||||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999987554
No 346
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.88 E-value=0.0029 Score=62.01 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=25.1
Q ss_pred CCCcccccCc--cEEEECCCCCChHHHHHHHH
Q 008014 322 DDDTVELEKS--NILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 322 ~~v~~~v~~~--~VLL~GPPGTGKTtLAraLA 351 (581)
-.+++.+.++ .++|+||+|+||||+.|.++
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3456777776 48899999999999999998
No 347
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0026 Score=61.34 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-.+.++|+||+||||+++-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468899999999999999999777
No 348
>PRK04296 thymidine kinase; Provisional
Probab=96.87 E-value=0.0029 Score=61.84 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~ 362 (581)
-.+++||+|+||||++..++..+ +...+.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35799999999999998887655 44555453
No 349
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.00093 Score=64.92 Aligned_cols=33 Identities=39% Similarity=0.752 Sum_probs=30.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.+++|+|++|+||||+.|+||+.++.+|+..|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999985544
No 350
>PHA02774 E1; Provisional
Probab=96.86 E-value=0.0039 Score=70.66 Aligned_cols=79 Identities=19% Similarity=0.412 Sum_probs=51.3
Q ss_pred ccC-ccEEEECCCCCChHHHHHHHHHHhCCCeEE-eccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhh
Q 008014 328 LEK-SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (581)
Q Consensus 328 v~~-~~VLL~GPPGTGKTtLAraLA~~l~~~fv~-i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID 405 (581)
+++ ..++|+||||||||++|-+|++.++...+. ++..+ .|- +..+ ....|++|||+-
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s----~Fw-------Lqpl----------~d~ki~vlDD~t 489 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS----HFW-------LQPL----------ADAKIALLDDAT 489 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc----ccc-------cchh----------ccCCEEEEecCc
Confidence 444 567799999999999999999998654432 44311 010 1111 233599999982
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHHHHHhCceeee
Q 008014 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 406 ~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
.-... -+...|..+|||..|.|
T Consensus 490 ~~~w~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 490 HPCWD-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred chHHH-------------HHHHHHHHHcCCCccee
Confidence 22111 15667999999987776
No 351
>PRK14531 adenylate kinase; Provisional
Probab=96.86 E-value=0.0011 Score=64.07 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=28.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
..+++.||||+||||+++.||+.++.+++ ++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd 35 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGD 35 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--eccc
Confidence 46899999999999999999999987765 4444
No 352
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.85 E-value=0.0011 Score=63.46 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
+++.||||+||||+|+.||+.++.+. ++..++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~ 33 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDL 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChH
Confidence 67999999999999999999997544 555543
No 353
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.012 Score=69.83 Aligned_cols=76 Identities=26% Similarity=0.359 Sum_probs=53.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh----------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l----------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~IL 399 (581)
.|-+|+|+||+|||.++.-+|+.. +..++.++...+.. ..+.|+- +..+..+...... ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 577999999999999999999766 23455566654332 3345543 6667766654432 2456689
Q ss_pred Eehhhhhhhhh
Q 008014 400 YIDEVDKITKK 410 (581)
Q Consensus 400 fIDEID~l~~~ 410 (581)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999999876
No 354
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.84 E-value=0.0036 Score=62.18 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=27.5
Q ss_pred CCCCCCcccccCcc-EEEECCCCCChHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 319 ~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~ 352 (581)
.+.+++++....+. ++|.||+|+|||++.++++.
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45677788887644 45999999999999999974
No 355
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.83 E-value=0.0018 Score=65.26 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred CccEEEECCCCCChHHHHHHHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA 351 (581)
+..+||+|+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999999986
No 356
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.83 E-value=0.0013 Score=63.40 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=29.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.+|+|.|++|+||||+++.+|+.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 579999999999999999999999998876654
No 357
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0011 Score=63.07 Aligned_cols=32 Identities=34% Similarity=0.620 Sum_probs=28.6
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..++|++|-|||||||++..||...+.+++.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 36999999999999999999999998888644
No 358
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.80 E-value=0.0059 Score=75.19 Aligned_cols=138 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred CCCCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccccccc---------ccccchh------
Q 008014 315 SCTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQA---------GYVGEDV------ 376 (581)
Q Consensus 315 ~~~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~~---------gyvGe~~------ 376 (581)
++-+.+|+++++.+.++.-+ ++|-+|+|||+|+.++-+.... --+.+|.-++.+. +.+++++
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 44578999999999999777 9999999999999999887732 2344555543321 1112211
Q ss_pred ------------hhHHHHHhhhhhh---------------------------------hHHhhccCeEEehhhhhhhhhh
Q 008014 377 ------------ESILYKLLTVSDY---------------------------------NVAAAQQGIVYIDEVDKITKKA 411 (581)
Q Consensus 377 ------------~~~l~~lf~~a~~---------------------------------~l~~a~~~ILfIDEID~l~~~r 411 (581)
...+.+.++.+.- +.--.+..||+|||+-+.-...
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 1122222221110 0011357899999987765543
Q ss_pred hhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCC
Q 008014 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (581)
Q Consensus 412 ~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn 468 (581)
. +.-+|.++.+...+.+|.. ..|+-.-++|..+++++-.|.
T Consensus 1310 T---------D~lIQ~tIR~~F~dcTVlt-------IAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1310 T---------DALIQKTIREEFKDCTVLT-------IAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred H---------HHHHHHHHHHHhcCCeEEE-------EeeccchhhhcCeEEEeeCCe
Confidence 2 2348999999999876542 356666788888888887764
No 359
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.80 E-value=0.0011 Score=61.31 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=23.9
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
++|.|+||+||||+|+.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999876654
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.80 E-value=0.001 Score=62.54 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=24.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
+++.||+||||||+|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999986664
No 361
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.79 E-value=0.0012 Score=63.27 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=25.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
|++.|+||+||||+|+.||+.++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999998776643
No 362
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.77 E-value=0.003 Score=70.69 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++..+ ++||+|+|||||++.+++.+
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999777 99999999999999999877
No 363
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.76 E-value=0.0015 Score=61.82 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=28.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.+++|+|++|||||++++.||+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46889999999999999999999999987554
No 364
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.76 E-value=0.0035 Score=70.73 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..++++++.++++..+ +.|++|+|||||++++++.+
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999888666 99999999999999999887
No 365
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.75 E-value=0.0015 Score=70.42 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.8
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+++++.|+|++|+|||.|.-++...+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 458999999999999999999987763
No 366
>PRK13946 shikimate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=63.41 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=29.8
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+..|+|+|.+||||||+++.||+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 368999999999999999999999999997655
No 367
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.73 E-value=0.0047 Score=69.57 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=32.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..++++++.++++..+ ++|++|+|||||+++|++.+
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999877666 99999999999999999877
No 368
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.73 E-value=0.0036 Score=62.11 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=56.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r 411 (581)
-++|.|+-|+|||+..+.|+..+ +.-+..... . ......+ ...-|+.+||++.+...
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-----~---kd~~~~l----------~~~~iveldEl~~~~k~- 110 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-----D---KDFLEQL----------QGKWIVELDELDGLSKK- 110 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHh----ccCccccCC-----C---cHHHHHH----------HHhHheeHHHHhhcchh-
Confidence 45699999999999999996652 211111110 0 1111111 22348999999998854
Q ss_pred hhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 412 ~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
-++.|-.++......+ +...+....--....+||+|+|..+
T Consensus 111 -------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 -------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred -------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCcc
Confidence 4567777777544433 1122222233345577888888544
No 369
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.73 E-value=0.00079 Score=66.34 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999876
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.71 E-value=0.0047 Score=57.99 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.2
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l 366 (581)
+++.|+||+||||+|+.|++.+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5799999999999999999988 555566655433
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.71 E-value=0.0052 Score=77.26 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.3
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
...+|+++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 356899999999999777 99999999999999999876
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.70 E-value=0.0015 Score=62.61 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=28.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s 364 (581)
.-++|.|+||+||||+|+.|++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4577999999999999999999987777655443
No 373
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.70 E-value=0.001 Score=66.60 Aligned_cols=36 Identities=22% Similarity=0.619 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999765
No 374
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0015 Score=63.04 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=29.8
Q ss_pred hcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHH
Q 008014 520 AYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (581)
Q Consensus 520 ~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l 556 (581)
-||+...-++=++.++.-...+.++...|+......+
T Consensus 137 ~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~ 173 (179)
T COG1102 137 IYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDAL 173 (179)
T ss_pred HhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhh
Confidence 3567777788889999999999999999998655544
No 375
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.69 E-value=0.025 Score=63.58 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
+-+||+||+||||||+++.|++++|..+.+..
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 45669999999999999999999998887665
No 376
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0021 Score=67.72 Aligned_cols=39 Identities=38% Similarity=0.629 Sum_probs=35.9
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~ 356 (581)
..+++++++++.++.+| |+|++|||||+++++|.+.+..
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~ 57 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK 57 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 35789999999999999 9999999999999999999863
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.68 E-value=0.00059 Score=61.91 Aligned_cols=34 Identities=35% Similarity=0.693 Sum_probs=28.9
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
|+++++.+.++.++ ++|++|+|||||.++|+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 35677888888666 99999999999999999866
No 378
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0092 Score=64.72 Aligned_cols=31 Identities=39% Similarity=0.557 Sum_probs=23.3
Q ss_pred CcccccCc-cEEEECCCCCChHHHHHHHHHHh
Q 008014 324 DTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 324 v~~~v~~~-~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+...+..+ .++|+||+|+||||++..||..+
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33334434 55699999999999999998654
No 379
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.67 E-value=0.03 Score=60.53 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=50.6
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.+...|.+.+..++.|..++.+. +. .-+.++.|+|..|||||.+.|.+-+.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~----------------------------~~-~~PS~~~iyG~sgTGKT~~~r~~l~~ 53 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNN----------------------------SC-TIPSIVHIYGHSGTGKTYLVRQLLRK 53 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCC----------------------------Cc-ccceeEEEeccCCCchhHHHHHHHhh
Confidence 34556889999999999888410 00 12367899999999999999999999
Q ss_pred hCCCeEEeccccc
Q 008014 354 VNVPFVIADATTL 366 (581)
Q Consensus 354 l~~~fv~i~~s~l 366 (581)
++.+.+.++|-+.
T Consensus 54 ~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 54 LNLENVWLNCVEC 66 (438)
T ss_pred cCCcceeeehHHh
Confidence 9999998888763
No 380
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.66 E-value=0.0011 Score=65.11 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999875
No 381
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0041 Score=61.16 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+-+++.||+|+||||+++++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999987774
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.66 E-value=0.007 Score=68.94 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCCCCCcccccCc-cEEEECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~-~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+++.++.++++ .+|+.||+|||||+|.|+||...
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5677778887777 56699999999999999999776
No 383
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.65 E-value=0.0039 Score=71.02 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++..+ +.||+|+|||||++.+++.+
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 4689999999888777 99999999999999999876
No 384
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.65 E-value=0.0027 Score=71.34 Aligned_cols=37 Identities=41% Similarity=0.660 Sum_probs=34.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..++++|++.+.++.++ |+|++||||||+||+|++..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999 99999999999999999877
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.65 E-value=0.017 Score=64.00 Aligned_cols=37 Identities=41% Similarity=0.573 Sum_probs=28.4
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccc
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~ 365 (581)
.+..++|+|++|+||||++..+|..+ +.....+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 34677899999999999999999777 45555555543
No 386
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.64 E-value=0.0014 Score=63.37 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999865
No 387
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.019 Score=62.56 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=21.7
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+..++|+||+|+||||++.-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999998765
No 388
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.002 Score=61.44 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=24.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.-+++.||||+||||+|+.|++.++...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35669999999999999999999876554
No 389
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.014 Score=62.50 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=24.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
.-++|+||||+||||++..+|..+ +..+..+++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 456799999999999999888766 344444444
No 390
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.052 Score=52.32 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=30.5
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEecccccc
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~ 367 (581)
+..+++.|++||||||++++++++++.+|+ ++.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~--dgDd~H 47 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFI--DGDDLH 47 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCccc--ccccCC
Confidence 356779999999999999999999999885 555554
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.61 E-value=0.0014 Score=65.10 Aligned_cols=36 Identities=33% Similarity=0.638 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999877 99999999999999999876
No 392
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.60 E-value=0.0012 Score=64.75 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999875
No 393
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0012 Score=66.04 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999877 99999999999999999865
No 394
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.004 Score=63.07 Aligned_cols=51 Identities=31% Similarity=0.493 Sum_probs=41.6
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~ 367 (581)
...++.+++++++++.++ +.|++|+||||+.++|+..... --+.+++.+++
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit 68 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT 68 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecC
Confidence 356899999999999999 9999999999999999987743 23556666654
No 395
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.60 E-value=0.0012 Score=65.51 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.++++.++ |.||+|+|||||.++|+...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999888 99999999999999999765
No 396
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.58 E-value=0.0011 Score=65.25 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999998877 99999999999999999876
No 397
>PTZ00301 uridine kinase; Provisional
Probab=96.58 E-value=0.02 Score=57.22 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEECCCCCChHHHHHHHHHHh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l 354 (581)
|.+.|+||+||||+|+.|++.+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 4499999999999999998766
No 398
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0013 Score=65.53 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 399
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.57 E-value=0.0072 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.7
Q ss_pred ccCc-cEEEECCCCCChHHHHHHHHH
Q 008014 328 LEKS-NILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 328 v~~~-~VLL~GPPGTGKTtLAraLA~ 352 (581)
+.++ .++|+||+|+||||+.++++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 3334 567999999999999999983
No 400
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.57 E-value=0.0013 Score=64.14 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++++..+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999998777 99999999999999999876
No 401
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.55 E-value=0.0013 Score=64.54 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999876
No 402
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0012 Score=65.97 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999877 99999999999999999876
No 403
>PRK14528 adenylate kinase; Provisional
Probab=96.54 E-value=0.0024 Score=62.13 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
..+++.||||+||||+|+.+++.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999877653
No 404
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.54 E-value=0.0013 Score=64.74 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3689999999999777 99999999999999999865
No 405
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.54 E-value=0.0015 Score=64.05 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999988777 99999999999999999876
No 406
>PRK02496 adk adenylate kinase; Provisional
Probab=96.54 E-value=0.0024 Score=61.46 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=25.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.+++.||||+||||+|+.||+.++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999987665
No 407
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.53 E-value=0.0014 Score=64.17 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999998777 99999999999999999865
No 408
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.002 Score=64.84 Aligned_cols=37 Identities=30% Similarity=0.614 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
-.+|++|++.+++..|- |.||+||||||+.|++-+..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 45789999999999888 99999999999999997655
No 409
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.53 E-value=0.0014 Score=64.27 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999777 99999999999999999876
No 410
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.0048 Score=60.36 Aligned_cols=35 Identities=34% Similarity=0.448 Sum_probs=26.6
Q ss_pred ccE-EEECCCCCChHHHHHHHHHHh---CCCeEEecccc
Q 008014 331 SNI-LLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (581)
Q Consensus 331 ~~V-LL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~ 365 (581)
+.+ +++||||+|||+++..++... +...+.++..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 444 499999999999999987543 55677777754
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.52 E-value=0.0016 Score=58.67 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCCCCcccccCcc-EEEECCCCCChHHHHHHHH
Q 008014 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 319 ~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA 351 (581)
.+++++++.+.++. +.|.||+|+|||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35778888888755 5599999999999999987
No 412
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.51 E-value=0.0015 Score=64.48 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999776 99999999999999999876
No 413
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.51 E-value=0.0025 Score=64.56 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
-.++|.||||+||||+|+.||+.++.+++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 358999999999999999999999877753
No 414
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0016 Score=63.99 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999865
No 415
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0014 Score=62.96 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999888 99999999999999999765
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.50 E-value=0.0048 Score=64.04 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=23.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.++++.||+|+||||+.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5889999999999999999998873
No 417
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.49 E-value=0.0016 Score=64.43 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+...
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999766 99999999999999999875
No 418
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.49 E-value=0.0019 Score=62.86 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHH
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~ 352 (581)
..+++++++.+.++.++ |.||+|+|||||.+++..
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34689999999999887 999999999999999963
No 419
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0016 Score=63.78 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999877 99999999999999999865
No 420
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0015 Score=64.09 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=31.7
Q ss_pred CCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.+.|.||+|+|||||+++++..+
T Consensus 14 ~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999998855599999999999999999865
No 421
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0014 Score=64.73 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999875
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.47 E-value=0.0037 Score=58.90 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
|.|+|++|||||||++.|++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 77766
No 423
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.47 E-value=0.0015 Score=64.47 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999888 99999999999999999876
No 424
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.47 E-value=0.0074 Score=58.59 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=18.0
Q ss_pred EEEECCCCCChHHHHHHHH
Q 008014 333 ILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA 351 (581)
++|+||+|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5799999999999999998
No 425
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0018 Score=65.37 Aligned_cols=36 Identities=36% Similarity=0.683 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999777 99999999999999999875
No 426
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.47 E-value=0.0015 Score=65.08 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3689999999999777 99999999999999999865
No 427
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.46 E-value=0.0018 Score=64.58 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999877 99999999999999999865
No 428
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.46 E-value=0.0016 Score=64.84 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999998777 99999999999999999876
No 429
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.46 E-value=0.0017 Score=64.50 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999877 99999999999999999765
No 430
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.0015 Score=69.32 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4799999999999988 999999999999999998763
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.45 E-value=0.0023 Score=56.59 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEECCCCCChHHHHHHHHHHh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l 354 (581)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999986
No 432
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.45 E-value=0.0017 Score=62.24 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ +.||+|+|||||+++++...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999876
No 433
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0016 Score=65.25 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999888 99999999999999999875
No 434
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.43 E-value=0.0016 Score=65.13 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999875
No 435
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.43 E-value=0.0051 Score=64.75 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=29.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
..|+|+|++|||||++++.+|+.++.+|+.++
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 67889999999999999999999999998554
No 436
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.43 E-value=0.0019 Score=64.55 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4789999999999777 99999999999999999876
No 437
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.41 E-value=0.0021 Score=63.39 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3789999999999887 99999999999999999865
No 438
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.40 E-value=0.005 Score=66.72 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=43.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc-----cccccchh-------hhHHHHHhhhhhhhHHhhc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----AGYVGEDV-------ESILYKLLTVSDYNVAAAQ 395 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~-----~gyvGe~~-------~~~l~~lf~~a~~~l~~a~ 395 (581)
.-+++.|+||+|||+++..+|... +.+.+.++..+-.. ..-.|... +..+..+.+ .+....
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~i~~~~ 158 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----SIEELK 158 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----HHHhcC
Confidence 455699999999999999998655 34566666543111 00001000 001111111 122347
Q ss_pred cCeEEehhhhhhhhh
Q 008014 396 QGIVYIDEVDKITKK 410 (581)
Q Consensus 396 ~~ILfIDEID~l~~~ 410 (581)
+.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 889999999988643
No 439
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.40 E-value=0.0019 Score=64.21 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 689999999999887 99999999999999999876
No 440
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.40 E-value=0.0085 Score=57.45 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=30.8
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ 368 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~ 368 (581)
-|+|+|.||+||||+|++|.+.+ +.+.+.+++..+..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 46699999999999999999877 77888888877653
No 441
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.0019 Score=63.32 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999777 99999999999999999876
No 442
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.39 E-value=0.002 Score=63.51 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999877 99999999999999999765
No 443
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.39 E-value=0.0021 Score=64.74 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999875
No 444
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.39 E-value=0.048 Score=60.25 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=26.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
.-++|+|++|+||||++..||..+ +.....+++-
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 456699999999999999998777 5555556553
No 445
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.38 E-value=0.0025 Score=64.54 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=38.9
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEeccccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTL 366 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l 366 (581)
..++++++++++++.++ ++||+|||||||...++..... --+.++..++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~ 69 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDL 69 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEc
Confidence 56899999999999888 9999999999999999876522 2344555443
No 446
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.002 Score=63.70 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999998877 99999999999999999865
No 447
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.38 E-value=0.0023 Score=63.95 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999777 99999999999999999873
No 448
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.38 E-value=0.002 Score=63.52 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999998766 99999999999999999865
No 449
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.38 E-value=0.0052 Score=61.32 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.8
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+.++|+||+|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5578999999999999999983
No 450
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0022 Score=63.91 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999877 99999999999999999876
No 451
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.37 E-value=0.0023 Score=63.88 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=31.2
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357888898888777 999999999999999998763
No 452
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0023 Score=64.72 Aligned_cols=36 Identities=22% Similarity=0.613 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999877 99999999999999999875
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.36 E-value=0.0034 Score=61.98 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=24.9
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
|++.||||+||||+|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999998876653
No 454
>PRK06547 hypothetical protein; Provisional
Probab=96.36 E-value=0.0033 Score=60.82 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=25.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.-|++.|++|+||||+|+.|++.++.+++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4566889999999999999999988776543
No 455
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.35 E-value=0.0022 Score=64.01 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999999777 99999999999999999876
No 456
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.35 E-value=0.0022 Score=64.78 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999888 99999999999999999875
No 457
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.35 E-value=0.0019 Score=76.38 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=49.5
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhh------hHHHHHhhhhhhhH-HhhccCeEEehhhh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE------SILYKLLTVSDYNV-AAAQQGIVYIDEVD 405 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~------~~l~~lf~~a~~~l-~~a~~~ILfIDEID 405 (581)
++++||||+|||+.|.++|..++..+++.++++.. +++...... ..+...+....... ......||++||+|
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 68999999999999999999999999999999876 333222110 11111110000000 01223499999999
Q ss_pred hhhh
Q 008014 406 KITK 409 (581)
Q Consensus 406 ~l~~ 409 (581)
-+..
T Consensus 439 ~~~~ 442 (871)
T KOG1968|consen 439 GMFG 442 (871)
T ss_pred cccc
Confidence 9987
No 458
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.34 E-value=0.0025 Score=62.91 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ +.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999887 99999999999999999865
No 459
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0025 Score=64.48 Aligned_cols=37 Identities=30% Similarity=0.622 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4789999999999888 999999999999999998763
No 460
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.33 E-value=0.0023 Score=62.55 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ +.||+|+|||||+++++...
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 4789999999999888 99999999999999999876
No 461
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.33 E-value=0.0025 Score=63.35 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 35789999999998777 999999999999999998763
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.32 E-value=0.0038 Score=61.83 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=27.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
.|++.||||+||||+|+.||+.++.+.+ +..++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCcc
Confidence 3789999999999999999999987665 44443
No 463
>PRK10908 cell division protein FtsE; Provisional
Probab=96.32 E-value=0.0021 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999887 99999999999999999866
No 464
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.0021 Score=61.88 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.5
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578889999999776 99999999999999999876
No 465
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0021 Score=64.48 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998776 99999999999999999875
No 466
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.002 Score=65.63 Aligned_cols=36 Identities=36% Similarity=0.706 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999998877 99999999999999999765
No 467
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.32 E-value=0.0021 Score=63.64 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999876
No 468
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0021 Score=61.44 Aligned_cols=36 Identities=39% Similarity=0.680 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ +.||+|+|||||+++++...
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999998777 99999999999999999865
No 469
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.32 E-value=0.0021 Score=64.36 Aligned_cols=36 Identities=19% Similarity=0.577 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999777 99999999999999999876
No 470
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.32 E-value=0.0032 Score=62.38 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=34.0
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.++|++++++++++.++ ++||+|.||||+.|.|....
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 56899999999999998 88999999999999998766
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0028 Score=64.09 Aligned_cols=36 Identities=31% Similarity=0.647 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3789999999999877 99999999999999999864
No 472
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0025 Score=63.26 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3789999999999766 99999999999999999876
No 473
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.019 Score=56.75 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-++|+||+|+||||++--||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 457799999999999988887655
No 474
>PF13245 AAA_19: Part of AAA domain
Probab=96.31 E-value=0.0062 Score=51.29 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=17.8
Q ss_pred ccEEEECCCCCChH-HHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKT-tLAraLA~~l 354 (581)
+-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557999999999 6666666655
No 475
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0024 Score=64.98 Aligned_cols=36 Identities=25% Similarity=0.612 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999887 99999999999999999875
No 476
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.31 E-value=0.0025 Score=63.75 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999888 99999999999999999765
No 477
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0038 Score=60.87 Aligned_cols=32 Identities=41% Similarity=0.684 Sum_probs=25.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
.|++.||||+||||+|+.||+.++. ..++..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhH
Confidence 4789999999999999999999644 4445444
No 478
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.31 E-value=0.002 Score=65.06 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999887 99999999999999999866
No 479
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.0022 Score=63.04 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999887 99999999999999999865
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0025 Score=61.98 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~ 353 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999998777 9999999999999999964
No 481
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.28 E-value=0.0023 Score=62.51 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+||||++++|+...
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999876
No 482
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0023 Score=64.36 Aligned_cols=36 Identities=39% Similarity=0.703 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999888 99999999999999999765
No 483
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.28 E-value=0.01 Score=59.38 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=24.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
.-++++|+||+|||+++..++... +.+.+.++..
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 455699999999999999996432 5555555543
No 484
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.27 E-value=0.013 Score=64.87 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=44.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc-----cccccchh-------hhHHHHHhhhhhhhHHhhc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----AGYVGEDV-------ESILYKLLTVSDYNVAAAQ 395 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~-----~gyvGe~~-------~~~l~~lf~~a~~~l~~a~ 395 (581)
.-+++.|+||+|||+++..++... +.+.+.++..+-.+ ..-.|.+. +..+..+.+ .+....
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~----~i~~~~ 156 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILA----TIEEEK 156 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHH----HHHhhC
Confidence 456699999999999999998655 55666676654211 00011100 001111111 123346
Q ss_pred cCeEEehhhhhhhhh
Q 008014 396 QGIVYIDEVDKITKK 410 (581)
Q Consensus 396 ~~ILfIDEID~l~~~ 410 (581)
+.+|+||++..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 789999999988653
No 485
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.27 E-value=0.003 Score=62.35 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999988777 99999999999999999876
No 486
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.27 E-value=0.012 Score=59.30 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCCCCCcccccCcc-EEEECCCCCChHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 319 ~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~ 352 (581)
.+.+++++.+.++. ++|.||+|+|||++.+.++.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566777776554 56999999999999999986
No 487
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0028 Score=64.43 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999998777 999999999999999998763
No 488
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.0032 Score=61.72 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ +.||+|+|||||+++|+...
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999875
No 489
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.26 E-value=0.0022 Score=66.94 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999887 99999999999999999776
No 490
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.26 E-value=0.012 Score=61.16 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=42.9
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehh
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 403 (581)
+.+|.||+|..|+||++++|..|-.++..++.+..+. +|--.+...-++.++..+.. +..+.+++++|
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d 97 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTD 97 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEEC
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecC
Confidence 3489999999999999999999988888888776542 33322223334444443321 23456666655
No 491
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0032 Score=63.42 Aligned_cols=37 Identities=24% Similarity=0.528 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999999777 999999999999999998753
No 492
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.25 E-value=0.0027 Score=64.02 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3688999999999888 99999999999999999876
No 493
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.25 E-value=0.0024 Score=62.27 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999877 99999999999999999865
No 494
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.25 E-value=0.0029 Score=61.93 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ +.||+|+|||||+++|+...
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999877 99999999999999999865
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.24 E-value=0.0092 Score=63.76 Aligned_cols=25 Identities=44% Similarity=0.761 Sum_probs=22.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+.+++.||+|+||||+.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6788999999999999999988764
No 496
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0027 Score=64.52 Aligned_cols=36 Identities=31% Similarity=0.641 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||++.|+...
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999875
No 497
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0025 Score=65.28 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999998777 99999999999999999875
No 498
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.23 E-value=0.023 Score=55.19 Aligned_cols=25 Identities=48% Similarity=0.724 Sum_probs=22.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++.||+|+||||++++++..+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6788999999999999999998773
No 499
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.23 E-value=0.0032 Score=62.48 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999999877 99999999999999999876
No 500
>PRK06696 uridine kinase; Validated
Probab=96.23 E-value=0.01 Score=59.17 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=28.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l 366 (581)
-|.+.|++|+||||+|+.|++.+ +.+.+.+...++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 45599999999999999999988 556666665554
Done!