Query 008014
Match_columns 581
No_of_seqs 356 out of 3356
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:02:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 1.3E-33 4.4E-38 295.5 19.0 292 264-578 2-294 (363)
2 1um8_A ATP-dependent CLP prote 100.0 5.2E-31 1.8E-35 276.6 21.9 295 263-578 7-311 (376)
3 1g41_A Heat shock protein HSLU 100.0 3.3E-29 1.1E-33 271.0 20.5 238 265-579 3-375 (444)
4 4b4t_J 26S protease regulatory 99.9 1.3E-24 4.6E-29 232.2 15.5 171 278-494 149-323 (405)
5 4b4t_I 26S protease regulatory 99.9 9.7E-24 3.3E-28 226.8 13.5 171 278-494 183-357 (437)
6 4b4t_H 26S protease regulatory 99.9 2.7E-23 9.2E-28 225.2 16.4 171 278-494 210-384 (467)
7 1ofh_A ATP-dependent HSL prote 99.9 1.8E-22 6.2E-27 203.1 19.7 236 266-578 4-240 (310)
8 4b4t_M 26S protease regulatory 99.9 2.5E-23 8.4E-28 224.7 14.1 215 278-555 182-401 (434)
9 4b4t_L 26S protease subunit RP 99.9 2.7E-23 9.2E-28 224.5 14.1 171 278-494 182-356 (437)
10 4b4t_K 26S protease regulatory 99.9 6.2E-23 2.1E-27 221.2 16.3 171 278-494 173-348 (428)
11 3cf2_A TER ATPase, transitiona 99.8 1.2E-21 4E-26 225.2 9.3 220 278-560 478-702 (806)
12 1r6b_X CLPA protein; AAA+, N-t 99.8 9.4E-20 3.2E-24 207.9 19.8 228 268-578 449-687 (758)
13 4fcw_A Chaperone protein CLPB; 99.8 2.1E-19 7.3E-24 181.7 19.9 229 268-578 8-250 (311)
14 3cf2_A TER ATPase, transitiona 99.8 5.3E-20 1.8E-24 211.5 11.4 219 278-562 205-428 (806)
15 3cf0_A Transitional endoplasmi 99.8 1.1E-18 3.8E-23 178.4 15.5 219 278-558 16-238 (301)
16 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.5E-18 8.5E-23 178.0 17.5 218 278-560 13-234 (322)
17 3pxi_A Negative regulator of g 99.8 1.8E-18 6E-23 197.8 17.4 212 268-578 482-696 (758)
18 3eie_A Vacuolar protein sortin 99.8 1.6E-18 5.4E-23 178.7 15.2 220 278-560 19-239 (322)
19 1qvr_A CLPB protein; coiled co 99.8 9E-18 3.1E-22 194.6 17.8 226 271-578 552-791 (854)
20 3syl_A Protein CBBX; photosynt 99.7 1.8E-17 6.2E-22 167.6 17.5 189 265-551 19-215 (309)
21 2qp9_X Vacuolar protein sortin 99.7 2.1E-17 7.1E-22 173.3 14.9 217 278-559 52-271 (355)
22 2x8a_A Nuclear valosin-contain 99.7 1.6E-17 5.5E-22 168.5 11.5 221 278-559 11-236 (274)
23 2ce7_A Cell division protein F 99.7 6.8E-17 2.3E-21 176.4 17.1 172 278-494 17-190 (476)
24 3m6a_A ATP-dependent protease 99.7 1.4E-17 4.7E-22 184.4 11.3 208 266-578 70-288 (543)
25 3h4m_A Proteasome-activating n 99.7 1.2E-16 4.1E-21 160.0 16.2 171 278-494 18-192 (285)
26 1lv7_A FTSH; alpha/beta domain 99.7 3E-16 1E-20 155.5 18.6 172 278-494 13-186 (257)
27 3vfd_A Spastin; ATPase, microt 99.7 1.3E-16 4.6E-21 168.4 16.2 170 278-494 116-286 (389)
28 3d8b_A Fidgetin-like protein 1 99.7 2.3E-16 7.8E-21 165.2 17.0 216 278-555 85-301 (357)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.5E-16 8.4E-21 155.1 16.1 171 278-494 7-181 (262)
30 2zan_A Vacuolar protein sortin 99.7 7.8E-17 2.7E-21 174.0 13.5 218 278-560 135-356 (444)
31 2dhr_A FTSH; AAA+ protein, hex 99.7 1.7E-16 5.7E-21 174.3 16.1 172 278-494 32-205 (499)
32 3t15_A Ribulose bisphosphate c 99.7 5.3E-17 1.8E-21 165.8 10.9 147 330-487 36-184 (293)
33 3b9p_A CG5977-PA, isoform A; A 99.7 3.2E-16 1.1E-20 158.0 15.4 212 278-552 22-236 (297)
34 3hu3_A Transitional endoplasmi 99.7 2.2E-16 7.6E-21 172.9 14.7 168 278-494 205-376 (489)
35 1ypw_A Transitional endoplasmi 99.6 2.2E-17 7.5E-22 190.6 0.5 172 278-494 478-652 (806)
36 3pfi_A Holliday junction ATP-d 99.6 5.9E-15 2E-19 151.4 18.5 136 278-471 30-165 (338)
37 2r62_A Cell division protease 99.6 1.7E-16 5.7E-21 157.8 5.8 172 278-494 12-187 (268)
38 2bjv_A PSP operon transcriptio 99.6 3.5E-15 1.2E-19 148.4 12.9 139 275-469 5-150 (265)
39 1iy2_A ATP-dependent metallopr 99.6 6.1E-15 2.1E-19 148.3 13.6 175 274-494 38-214 (278)
40 1ixz_A ATP-dependent metallopr 99.6 1.5E-14 5.2E-19 143.0 14.3 172 278-494 17-190 (254)
41 2r44_A Uncharacterized protein 99.6 6.6E-15 2.2E-19 151.1 11.8 178 268-551 18-196 (331)
42 1ojl_A Transcriptional regulat 99.6 5E-15 1.7E-19 152.2 10.7 148 277-480 2-156 (304)
43 2c9o_A RUVB-like 1; hexameric 99.6 4E-15 1.4E-19 160.7 8.7 107 277-414 37-145 (456)
44 1hqc_A RUVB; extended AAA-ATPa 99.5 1.3E-13 4.3E-18 140.1 18.2 137 278-471 13-149 (324)
45 3n70_A Transport activator; si 99.5 8.1E-15 2.8E-19 134.1 8.4 122 278-481 2-126 (145)
46 3u61_B DNA polymerase accessor 99.5 3.6E-14 1.2E-18 145.0 13.3 164 278-570 27-191 (324)
47 1d2n_A N-ethylmaleimide-sensit 99.5 7.4E-14 2.5E-18 139.6 11.9 130 331-490 65-198 (272)
48 1g8p_A Magnesium-chelatase 38 99.5 3.5E-13 1.2E-17 138.0 16.4 144 331-551 46-230 (350)
49 3uk6_A RUVB-like 2; hexameric 99.5 4.3E-13 1.5E-17 138.8 16.2 63 278-367 45-109 (368)
50 3f9v_A Minichromosome maintena 99.5 3.3E-14 1.1E-18 159.1 7.0 203 267-550 285-487 (595)
51 3pvs_A Replication-associated 99.5 2.6E-13 8.8E-18 147.0 13.3 103 278-435 27-132 (447)
52 1jbk_A CLPB protein; beta barr 99.5 1.6E-13 5.6E-18 126.1 10.0 115 278-434 23-148 (195)
53 1ypw_A Transitional endoplasmi 99.5 2E-13 7E-18 157.6 13.0 170 278-494 205-376 (806)
54 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.1E-13 1.4E-17 147.5 13.4 124 268-440 13-140 (500)
55 2chg_A Replication factor C sm 99.4 5E-12 1.7E-16 118.8 15.8 105 278-434 18-127 (226)
56 3co5_A Putative two-component 99.4 1.7E-13 5.7E-18 125.2 3.9 97 278-435 5-101 (143)
57 3dzd_A Transcriptional regulat 99.4 1.5E-12 5.1E-17 137.4 10.4 177 278-552 130-315 (368)
58 1ny5_A Transcriptional regulat 99.3 4.4E-12 1.5E-16 134.5 12.0 126 330-481 160-292 (387)
59 3pxg_A Negative regulator of g 99.3 1.4E-12 4.8E-17 141.6 7.2 98 278-434 181-288 (468)
60 1njg_A DNA polymerase III subu 99.3 3.9E-11 1.3E-15 113.7 15.4 112 278-434 24-151 (250)
61 1qvr_A CLPB protein; coiled co 99.3 1.4E-11 5E-16 142.7 13.8 168 278-561 171-349 (854)
62 2p65_A Hypothetical protein PF 99.3 4.4E-12 1.5E-16 116.7 7.1 116 278-434 23-149 (187)
63 1sxj_D Activator 1 41 kDa subu 99.3 6.3E-12 2.2E-16 128.6 8.7 107 278-434 38-158 (353)
64 3te6_A Regulatory protein SIR3 99.3 1.2E-11 4.2E-16 128.5 10.7 167 278-555 21-213 (318)
65 1iqp_A RFCS; clamp loader, ext 99.3 4E-11 1.4E-15 120.9 13.8 105 278-434 26-135 (327)
66 2qby_B CDC6 homolog 3, cell di 99.3 3.5E-11 1.2E-15 124.4 13.6 62 277-366 20-92 (384)
67 3pxi_A Negative regulator of g 99.2 5E-12 1.7E-16 144.6 7.6 98 278-434 181-288 (758)
68 1sxj_A Activator 1 95 kDa subu 99.2 1.2E-10 4.2E-15 127.7 17.1 130 278-434 40-176 (516)
69 2chq_A Replication factor C sm 99.2 2.3E-11 7.9E-16 122.2 10.2 105 278-434 18-127 (319)
70 2v1u_A Cell division control p 99.2 6.4E-11 2.2E-15 121.8 13.3 103 277-410 19-145 (387)
71 3k1j_A LON protease, ATP-depen 99.2 2.7E-11 9.1E-16 135.4 10.7 44 278-355 42-85 (604)
72 1l8q_A Chromosomal replication 99.2 8.1E-11 2.8E-15 120.4 13.3 85 331-434 38-125 (324)
73 1r6b_X CLPA protein; AAA+, N-t 99.2 8.3E-11 2.8E-15 134.2 14.6 99 274-410 184-293 (758)
74 1in4_A RUVB, holliday junction 99.2 2.6E-10 8.9E-15 118.1 16.8 105 275-435 24-128 (334)
75 1sxj_B Activator 1 37 kDa subu 99.2 7.3E-11 2.5E-15 118.8 12.2 103 278-434 22-132 (323)
76 1jr3_A DNA polymerase III subu 99.2 1.3E-10 4.5E-15 119.7 14.1 104 278-434 17-144 (373)
77 1fnn_A CDC6P, cell division co 99.2 1.5E-10 5.3E-15 119.4 13.9 111 278-434 18-150 (389)
78 2gno_A DNA polymerase III, gam 99.2 6.1E-11 2.1E-15 122.3 10.8 136 281-494 1-143 (305)
79 1sxj_C Activator 1 40 kDa subu 99.2 3E-10 1E-14 117.3 14.7 103 279-434 27-135 (340)
80 3f8t_A Predicted ATPase involv 99.2 2.9E-11 9.8E-16 131.6 7.3 143 268-470 205-349 (506)
81 1sxj_E Activator 1 40 kDa subu 99.1 8.1E-10 2.8E-14 113.5 14.8 24 331-354 37-60 (354)
82 3bos_A Putative DNA replicatio 99.1 9E-10 3.1E-14 105.6 12.4 76 331-434 53-131 (242)
83 2qby_A CDC6 homolog 1, cell di 99.0 6E-10 2E-14 114.3 11.4 116 278-434 21-157 (386)
84 1a5t_A Delta prime, HOLB; zinc 99.0 2E-09 7E-14 111.3 15.1 121 331-493 25-170 (334)
85 2z4s_A Chromosomal replication 99.0 1.6E-09 5.5E-14 116.8 14.3 85 331-434 131-221 (440)
86 3ec2_A DNA replication protein 98.8 1.2E-08 4.1E-13 95.4 8.7 82 331-434 39-127 (180)
87 1w5s_A Origin recognition comp 98.7 6.3E-08 2.2E-12 100.8 11.6 62 278-365 23-96 (412)
88 4akg_A Glutathione S-transfera 98.5 1.4E-07 4.8E-12 120.3 10.8 142 330-494 1267-1422(2695)
89 2w58_A DNAI, primosome compone 98.5 3.9E-08 1.3E-12 93.3 3.0 37 331-367 55-94 (202)
90 3cmw_A Protein RECA, recombina 98.5 2.9E-07 9.8E-12 113.1 10.7 160 270-435 1014-1203(1706)
91 2qen_A Walker-type ATPase; unk 98.4 4.6E-06 1.6E-10 84.2 16.2 52 278-365 13-64 (350)
92 2kjq_A DNAA-related protein; s 98.4 4E-07 1.4E-11 83.9 7.5 69 331-434 37-108 (149)
93 2fna_A Conserved hypothetical 98.3 8.3E-06 2.8E-10 82.4 14.1 35 331-365 31-65 (357)
94 2qgz_A Helicase loader, putati 98.2 2.9E-07 9.9E-12 94.6 1.8 36 331-366 153-192 (308)
95 4akg_A Glutathione S-transfera 98.2 6.6E-06 2.3E-10 105.1 13.0 67 331-410 646-712 (2695)
96 1tue_A Replication protein E1; 98.0 7.9E-06 2.7E-10 80.2 7.9 77 331-440 59-135 (212)
97 1u0j_A DNA replication protein 98.0 8.2E-06 2.8E-10 82.8 7.4 25 331-355 105-129 (267)
98 2vhj_A Ntpase P4, P4; non- hyd 98.0 6.3E-06 2.1E-10 86.0 6.1 73 331-411 124-198 (331)
99 1ye8_A Protein THEP1, hypothet 97.9 6.9E-05 2.4E-09 70.9 11.7 26 332-357 2-27 (178)
100 3vkg_A Dynein heavy chain, cyt 97.9 2.5E-05 8.4E-10 100.9 9.9 116 330-470 1304-1432(3245)
101 3vaa_A Shikimate kinase, SK; s 97.7 2E-05 6.8E-10 74.9 4.3 45 318-362 12-57 (199)
102 2r2a_A Uncharacterized protein 97.5 0.00011 3.8E-09 71.1 6.5 74 331-410 6-102 (199)
103 3cmu_A Protein RECA, recombina 97.5 0.00015 5.1E-09 90.6 9.2 78 330-411 1427-1521(2050)
104 3nh6_A ATP-binding cassette SU 97.3 0.00016 5.6E-09 74.5 5.6 38 318-355 67-105 (306)
105 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.3E-09 67.8 4.3 32 331-362 6-37 (185)
106 4f4c_A Multidrug resistance pr 97.3 0.00034 1.2E-08 84.9 9.1 49 317-365 430-481 (1321)
107 2ehv_A Hypothetical protein PH 97.3 0.00093 3.2E-08 64.3 10.2 25 327-351 26-51 (251)
108 3vkg_A Dynein heavy chain, cyt 97.3 0.0013 4.4E-08 85.3 14.1 66 332-410 606-671 (3245)
109 4f4c_A Multidrug resistance pr 97.3 0.00016 5.6E-09 87.7 5.1 49 319-367 1093-1144(1321)
110 1qhx_A CPT, protein (chloramph 97.2 0.00023 7.9E-09 65.4 4.9 33 331-363 4-36 (178)
111 3upu_A ATP-dependent DNA helic 97.2 0.0012 4.1E-08 71.0 10.3 24 331-354 46-69 (459)
112 3kb2_A SPBC2 prophage-derived 97.2 0.00027 9.2E-09 64.2 4.5 31 332-362 3-33 (173)
113 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00067 2.3E-08 64.2 7.2 36 328-363 20-59 (235)
114 3qf4_B Uncharacterized ABC tra 97.1 0.00084 2.9E-08 74.9 8.7 38 318-355 368-406 (598)
115 1zuh_A Shikimate kinase; alpha 97.1 0.00033 1.1E-08 64.1 4.1 31 331-361 8-38 (168)
116 1via_A Shikimate kinase; struc 97.1 0.0003 1E-08 64.9 3.7 29 332-360 6-34 (175)
117 2iyv_A Shikimate kinase, SK; t 97.0 0.0004 1.4E-08 64.4 4.4 31 331-361 3-33 (184)
118 1y63_A LMAJ004144AAA protein; 97.0 0.00031 1.1E-08 65.8 3.6 31 331-361 11-42 (184)
119 1kag_A SKI, shikimate kinase I 97.0 0.00036 1.2E-08 63.8 3.8 29 331-359 5-33 (173)
120 1z6g_A Guanylate kinase; struc 97.0 0.00028 9.7E-09 68.3 3.3 35 320-354 12-47 (218)
121 2jeo_A Uridine-cytidine kinase 97.0 0.00035 1.2E-08 68.5 3.9 39 319-357 13-52 (245)
122 4a82_A Cystic fibrosis transme 97.0 0.0011 3.6E-08 73.7 8.2 38 318-355 354-392 (578)
123 3iij_A Coilin-interacting nucl 97.0 0.00039 1.3E-08 64.4 4.0 31 331-361 12-42 (180)
124 2i3b_A HCR-ntpase, human cance 97.0 0.00094 3.2E-08 63.8 6.4 23 332-354 3-25 (189)
125 1svm_A Large T antigen; AAA+ f 97.0 0.0002 6.8E-09 76.0 1.7 36 325-360 163-199 (377)
126 1zp6_A Hypothetical protein AT 96.9 0.00039 1.3E-08 64.6 3.4 35 332-366 11-45 (191)
127 3qf4_A ABC transporter, ATP-bi 96.9 0.00086 2.9E-08 74.7 6.7 48 318-365 356-406 (587)
128 2rhm_A Putative kinase; P-loop 96.9 0.00048 1.6E-08 63.9 3.9 31 331-361 6-36 (193)
129 1n0w_A DNA repair protein RAD5 96.9 0.0011 3.7E-08 63.7 6.2 36 330-365 23-68 (243)
130 2cdn_A Adenylate kinase; phosp 96.9 0.00074 2.5E-08 63.7 4.6 31 331-361 21-51 (201)
131 2ze6_A Isopentenyl transferase 96.9 0.00069 2.4E-08 67.3 4.5 32 332-363 3-34 (253)
132 3lw7_A Adenylate kinase relate 96.9 0.00055 1.9E-08 61.6 3.5 29 332-361 3-31 (179)
133 1e6c_A Shikimate kinase; phosp 96.8 0.0006 2.1E-08 62.2 3.6 31 331-361 3-33 (173)
134 3t61_A Gluconokinase; PSI-biol 96.8 0.00085 2.9E-08 63.3 4.7 31 331-361 19-49 (202)
135 2cvh_A DNA repair and recombin 96.8 0.00055 1.9E-08 64.7 3.3 37 329-365 18-55 (220)
136 3nwj_A ATSK2; P loop, shikimat 96.8 0.00022 7.4E-09 71.4 0.5 31 331-361 49-79 (250)
137 2c95_A Adenylate kinase 1; tra 96.8 0.00065 2.2E-08 63.1 3.6 31 331-361 10-40 (196)
138 1tev_A UMP-CMP kinase; ploop, 96.8 0.00065 2.2E-08 62.7 3.6 30 331-360 4-33 (196)
139 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00065 2.2E-08 70.4 3.8 68 331-406 172-251 (330)
140 2zr9_A Protein RECA, recombina 96.8 0.0028 9.5E-08 66.3 8.5 82 328-409 58-153 (349)
141 2pt5_A Shikimate kinase, SK; a 96.8 0.00086 2.9E-08 61.0 4.1 30 332-361 2-31 (168)
142 1tf7_A KAIC; homohexamer, hexa 96.8 0.0019 6.5E-08 70.7 7.5 48 318-365 25-78 (525)
143 2b8t_A Thymidine kinase; deoxy 96.8 0.0043 1.5E-07 61.1 9.3 31 331-361 13-46 (223)
144 3dl0_A Adenylate kinase; phosp 96.8 0.00084 2.9E-08 64.0 4.0 30 332-361 2-31 (216)
145 3tif_A Uncharacterized ABC tra 96.7 0.00032 1.1E-08 69.2 1.1 37 319-355 19-56 (235)
146 3fb4_A Adenylate kinase; psych 96.7 0.00091 3.1E-08 63.6 4.1 30 332-361 2-31 (216)
147 3cm0_A Adenylate kinase; ATP-b 96.7 0.00067 2.3E-08 62.7 3.1 29 331-359 5-33 (186)
148 4a74_A DNA repair and recombin 96.7 0.0023 7.9E-08 60.7 6.9 26 329-354 23-49 (231)
149 1aky_A Adenylate kinase; ATP:A 96.7 0.0009 3.1E-08 64.1 3.9 31 331-361 5-35 (220)
150 1htw_A HI0065; nucleotide-bind 96.7 0.00044 1.5E-08 64.4 1.6 33 322-354 24-57 (158)
151 1knq_A Gluconate kinase; ALFA/ 96.7 0.001 3.5E-08 61.1 4.0 29 331-359 9-37 (175)
152 1kht_A Adenylate kinase; phosp 96.7 0.00069 2.4E-08 62.5 2.8 25 331-355 4-28 (192)
153 2vli_A Antibiotic resistance p 96.7 0.00087 3E-08 61.7 3.4 29 331-359 6-34 (183)
154 1jr3_D DNA polymerase III, del 96.7 0.0033 1.1E-07 64.4 8.1 77 331-434 19-102 (343)
155 2bwj_A Adenylate kinase 5; pho 96.7 0.00091 3.1E-08 62.3 3.5 30 331-360 13-42 (199)
156 2cbz_A Multidrug resistance-as 96.6 0.00048 1.6E-08 68.0 1.5 36 319-354 19-55 (237)
157 3e1s_A Exodeoxyribonuclease V, 96.6 0.003 1E-07 70.3 8.0 31 331-361 205-238 (574)
158 1qf9_A UMP/CMP kinase, protein 96.6 0.00094 3.2E-08 61.6 3.3 31 331-361 7-37 (194)
159 1ak2_A Adenylate kinase isoenz 96.6 0.0011 3.7E-08 64.4 3.9 31 331-361 17-47 (233)
160 3hr8_A Protein RECA; alpha and 96.6 0.0042 1.4E-07 65.3 8.6 82 328-409 58-153 (356)
161 1b0u_A Histidine permease; ABC 96.6 0.00044 1.5E-08 69.3 1.0 37 319-355 20-57 (262)
162 4eun_A Thermoresistant glucoki 96.6 0.0013 4.5E-08 62.2 4.2 29 331-359 30-58 (200)
163 1g6h_A High-affinity branched- 96.6 0.00049 1.7E-08 68.7 1.2 36 319-354 21-57 (257)
164 2pcj_A ABC transporter, lipopr 96.6 0.0005 1.7E-08 67.3 1.3 37 319-355 18-55 (224)
165 3gfo_A Cobalt import ATP-bindi 96.6 0.00044 1.5E-08 70.1 0.9 36 319-354 22-58 (275)
166 1ly1_A Polynucleotide kinase; 96.6 0.00069 2.4E-08 61.9 2.2 28 331-358 3-31 (181)
167 2orw_A Thymidine kinase; TMTK, 96.6 0.0026 8.8E-08 60.3 6.1 22 332-353 5-26 (184)
168 4gp7_A Metallophosphoesterase; 96.6 0.0009 3.1E-08 62.2 2.9 27 324-350 2-29 (171)
169 3g5u_A MCG1178, multidrug resi 96.6 0.002 6.9E-08 78.0 6.5 47 319-365 404-453 (1284)
170 2pze_A Cystic fibrosis transme 96.6 0.00057 1.9E-08 67.1 1.4 36 319-354 22-58 (229)
171 1zak_A Adenylate kinase; ATP:A 96.6 0.00095 3.3E-08 64.0 2.9 29 331-359 6-34 (222)
172 1mv5_A LMRA, multidrug resista 96.6 0.0006 2E-08 67.5 1.5 36 319-354 16-52 (243)
173 1zd8_A GTP:AMP phosphotransfer 96.5 0.0011 3.8E-08 63.9 3.3 31 331-361 8-38 (227)
174 3b9q_A Chloroplast SRP recepto 96.5 0.0032 1.1E-07 64.6 6.9 33 322-354 91-124 (302)
175 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0042 1.4E-07 61.6 7.6 36 331-366 5-43 (260)
176 2p5t_B PEZT; postsegregational 96.5 0.0015 5.1E-08 64.5 4.2 37 331-367 33-69 (253)
177 2v9p_A Replication protein E1; 96.5 0.00063 2.2E-08 70.2 1.5 35 320-354 115-150 (305)
178 3fvq_A Fe(3+) IONS import ATP- 96.5 0.00072 2.5E-08 71.3 2.0 36 319-354 18-54 (359)
179 4g1u_C Hemin import ATP-bindin 96.5 0.00065 2.2E-08 68.4 1.6 36 319-354 25-61 (266)
180 2ixe_A Antigen peptide transpo 96.5 0.00065 2.2E-08 68.5 1.5 37 319-355 33-70 (271)
181 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.4E-08 61.9 3.5 31 331-361 16-46 (203)
182 3g5u_A MCG1178, multidrug resi 96.5 0.0049 1.7E-07 74.7 9.4 37 319-355 1047-1084(1284)
183 1ji0_A ABC transporter; ATP bi 96.5 0.00055 1.9E-08 67.6 0.9 36 319-354 20-56 (240)
184 3be4_A Adenylate kinase; malar 96.5 0.0013 4.5E-08 63.1 3.6 31 331-361 6-36 (217)
185 3tr0_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 61.3 3.8 23 332-354 9-31 (205)
186 1e4v_A Adenylate kinase; trans 96.5 0.0015 5.1E-08 62.4 3.8 30 332-361 2-31 (214)
187 2ghi_A Transport protein; mult 96.5 0.00071 2.4E-08 67.8 1.6 36 319-354 34-70 (260)
188 2olj_A Amino acid ABC transpor 96.5 0.0006 2.1E-08 68.6 1.0 37 319-355 38-75 (263)
189 2d2e_A SUFC protein; ABC-ATPas 96.5 0.00086 3E-08 66.6 2.1 35 319-353 17-52 (250)
190 1cke_A CK, MSSA, protein (cyti 96.5 0.0018 6.1E-08 61.8 4.2 29 331-359 6-34 (227)
191 2ff7_A Alpha-hemolysin translo 96.5 0.00061 2.1E-08 67.8 0.9 37 319-355 23-60 (247)
192 3rlf_A Maltose/maltodextrin im 96.5 0.00089 3E-08 71.1 2.2 36 319-354 17-53 (381)
193 3lnc_A Guanylate kinase, GMP k 96.5 0.00095 3.3E-08 64.5 2.3 35 320-354 16-52 (231)
194 2zu0_C Probable ATP-dependent 96.4 0.00096 3.3E-08 67.1 2.2 36 319-354 34-70 (267)
195 1z47_A CYSA, putative ABC-tran 96.4 0.001 3.6E-08 69.9 2.6 36 319-354 29-65 (355)
196 2jaq_A Deoxyguanosine kinase; 96.4 0.0017 5.8E-08 60.5 3.8 28 332-359 2-29 (205)
197 2pbr_A DTMP kinase, thymidylat 96.4 0.0024 8E-08 59.0 4.7 30 333-362 3-35 (195)
198 2qi9_C Vitamin B12 import ATP- 96.4 0.00075 2.6E-08 67.3 1.4 36 319-354 14-50 (249)
199 3tlx_A Adenylate kinase 2; str 96.4 0.0016 5.3E-08 64.1 3.7 31 331-361 30-60 (243)
200 2pez_A Bifunctional 3'-phospho 96.4 0.0025 8.5E-08 58.9 4.8 36 331-366 6-44 (179)
201 3gd7_A Fusion complex of cysti 96.4 0.00089 3E-08 71.3 1.7 37 318-354 34-71 (390)
202 1sgw_A Putative ABC transporte 96.4 0.00062 2.1E-08 66.5 0.5 37 319-355 23-60 (214)
203 2ihy_A ABC transporter, ATP-bi 96.4 0.00071 2.4E-08 68.6 0.9 36 319-354 35-71 (279)
204 2yz2_A Putative ABC transporte 96.4 0.00077 2.6E-08 67.7 1.1 36 319-354 21-57 (266)
205 1pzn_A RAD51, DNA repair and r 96.4 0.0026 8.8E-08 66.4 5.0 41 325-365 125-175 (349)
206 1gvn_B Zeta; postsegregational 96.4 0.0024 8.1E-08 64.7 4.6 36 331-366 34-69 (287)
207 1vpl_A ABC transporter, ATP-bi 96.3 0.001 3.4E-08 66.7 1.7 36 319-354 29-65 (256)
208 3sr0_A Adenylate kinase; phosp 96.3 0.0023 7.7E-08 62.1 4.0 33 332-366 2-34 (206)
209 2yyz_A Sugar ABC transporter, 96.3 0.0012 4.1E-08 69.5 2.3 36 319-354 17-53 (359)
210 2it1_A 362AA long hypothetical 96.3 0.0012 4.1E-08 69.6 2.2 36 319-354 17-53 (362)
211 2dr3_A UPF0273 protein PH0284; 96.3 0.0047 1.6E-07 59.2 6.2 37 328-364 20-60 (247)
212 2nq2_C Hypothetical ABC transp 96.3 0.00082 2.8E-08 67.1 0.9 36 319-354 19-55 (253)
213 3uie_A Adenylyl-sulfate kinase 96.3 0.0024 8.2E-08 60.4 4.0 35 332-366 27-64 (200)
214 2if2_A Dephospho-COA kinase; a 96.3 0.0019 6.3E-08 60.9 3.1 29 332-361 3-31 (204)
215 3jvv_A Twitching mobility prot 96.3 0.0057 2E-07 64.2 7.1 24 331-354 124-147 (356)
216 1v43_A Sugar-binding transport 96.3 0.0013 4.4E-08 69.6 2.2 36 319-354 25-61 (372)
217 2z0h_A DTMP kinase, thymidylat 96.3 0.0031 1.1E-07 58.5 4.6 29 333-361 3-34 (197)
218 1g29_1 MALK, maltose transport 96.3 0.0013 4.5E-08 69.5 2.1 36 319-354 17-53 (372)
219 3kl4_A SRP54, signal recogniti 96.3 0.013 4.5E-07 63.1 10.0 34 330-363 97-133 (433)
220 1nks_A Adenylate kinase; therm 96.3 0.0015 5.1E-08 60.2 2.2 24 332-355 3-26 (194)
221 2xb4_A Adenylate kinase; ATP-b 96.3 0.0022 7.6E-08 62.0 3.5 29 332-360 2-30 (223)
222 1znw_A Guanylate kinase, GMP k 96.3 0.0024 8.2E-08 60.8 3.7 29 327-355 16-45 (207)
223 3ake_A Cytidylate kinase; CMP 96.2 0.0028 9.6E-08 59.3 4.1 30 332-361 4-33 (208)
224 2onk_A Molybdate/tungstate ABC 96.2 0.0013 4.3E-08 65.3 1.8 33 321-354 15-48 (240)
225 1jjv_A Dephospho-COA kinase; P 96.2 0.0023 7.8E-08 60.4 3.4 28 332-360 4-31 (206)
226 3tui_C Methionine import ATP-b 96.2 0.0015 5.1E-08 69.1 2.2 36 319-354 42-78 (366)
227 3dm5_A SRP54, signal recogniti 96.2 0.017 5.7E-07 62.5 10.4 35 330-364 100-137 (443)
228 1uf9_A TT1252 protein; P-loop, 96.2 0.0025 8.7E-08 59.4 3.5 29 331-360 9-37 (203)
229 2ga8_A Hypothetical 39.9 kDa p 96.2 0.003 1E-07 66.6 4.3 30 331-360 25-54 (359)
230 3d31_A Sulfate/molybdate ABC t 96.2 0.0012 4E-08 69.3 1.1 35 320-354 15-50 (348)
231 2bbs_A Cystic fibrosis transme 96.2 0.0012 4.3E-08 67.3 1.3 36 319-354 52-88 (290)
232 2j41_A Guanylate kinase; GMP, 96.2 0.0026 8.7E-08 59.6 3.3 23 332-354 8-30 (207)
233 3umf_A Adenylate kinase; rossm 96.1 0.0028 9.7E-08 62.1 3.7 33 331-365 30-62 (217)
234 2bbw_A Adenylate kinase 4, AK4 96.1 0.0039 1.3E-07 60.9 4.7 29 331-359 28-56 (246)
235 2v54_A DTMP kinase, thymidylat 96.1 0.0029 1E-07 59.1 3.6 32 331-362 5-37 (204)
236 3crm_A TRNA delta(2)-isopenten 96.1 0.0027 9.3E-08 66.0 3.7 34 331-364 6-39 (323)
237 2fz4_A DNA repair protein RAD2 96.1 0.0081 2.8E-07 58.8 6.9 34 331-364 109-142 (237)
238 1oxx_K GLCV, glucose, ABC tran 96.1 0.001 3.5E-08 69.8 0.4 35 320-354 20-55 (353)
239 1u94_A RECA protein, recombina 96.1 0.016 5.3E-07 60.9 9.2 82 328-409 60-155 (356)
240 3thx_B DNA mismatch repair pro 96.1 0.0046 1.6E-07 72.5 5.5 36 318-353 660-696 (918)
241 2wwf_A Thymidilate kinase, put 96.0 0.0022 7.7E-08 60.3 2.2 29 331-359 11-39 (212)
242 2og2_A Putative signal recogni 96.0 0.0087 3E-07 63.0 6.8 32 323-354 149-181 (359)
243 2plr_A DTMP kinase, probable t 96.0 0.0038 1.3E-07 58.4 3.7 27 331-357 5-31 (213)
244 1cr0_A DNA primase/helicase; R 96.0 0.0023 7.8E-08 64.2 2.3 45 319-363 23-72 (296)
245 2yhs_A FTSY, cell division pro 96.0 0.0066 2.3E-07 66.6 6.0 33 322-354 284-317 (503)
246 2z43_A DNA repair and recombin 96.0 0.0095 3.2E-07 61.1 6.9 37 329-365 105-151 (324)
247 1nn5_A Similar to deoxythymidy 95.9 0.0028 9.5E-08 59.7 2.2 27 331-357 10-36 (215)
248 1kgd_A CASK, peripheral plasma 95.9 0.0048 1.7E-07 57.5 3.8 25 331-355 6-30 (180)
249 3r20_A Cytidylate kinase; stru 95.8 0.0055 1.9E-07 60.8 4.2 29 331-359 10-38 (233)
250 2qt1_A Nicotinamide riboside k 95.8 0.0038 1.3E-07 59.0 2.9 28 332-359 23-51 (207)
251 2grj_A Dephospho-COA kinase; T 95.8 0.0049 1.7E-07 59.0 3.6 30 332-361 14-43 (192)
252 2qor_A Guanylate kinase; phosp 95.8 0.0052 1.8E-07 58.2 3.7 25 331-355 13-37 (204)
253 2pjz_A Hypothetical protein ST 95.8 0.0025 8.7E-08 64.0 1.6 35 319-354 19-54 (263)
254 4e22_A Cytidylate kinase; P-lo 95.8 0.0061 2.1E-07 60.2 4.3 28 332-359 29-56 (252)
255 3cmu_A Protein RECA, recombina 95.8 0.03 1E-06 70.4 11.0 81 329-412 1080-1176(2050)
256 3c8u_A Fructokinase; YP_612366 95.8 0.0055 1.9E-07 58.4 3.7 24 332-355 24-47 (208)
257 3a8t_A Adenylate isopentenyltr 95.7 0.0038 1.3E-07 65.3 2.7 33 332-364 42-74 (339)
258 1vht_A Dephospho-COA kinase; s 95.7 0.0053 1.8E-07 58.5 3.4 29 332-361 6-34 (218)
259 1vma_A Cell division protein F 95.7 0.023 7.8E-07 58.4 8.4 32 332-363 106-140 (306)
260 3io5_A Recombination and repai 95.7 0.0094 3.2E-07 62.1 5.4 80 330-409 28-125 (333)
261 2eyu_A Twitching motility prot 95.7 0.004 1.4E-07 62.4 2.5 24 331-354 26-49 (261)
262 2h92_A Cytidylate kinase; ross 95.7 0.0065 2.2E-07 57.7 3.8 31 331-361 4-34 (219)
263 2bdt_A BH3686; alpha-beta prot 95.7 0.0057 1.9E-07 56.9 3.3 33 332-365 4-36 (189)
264 3asz_A Uridine kinase; cytidin 95.7 0.0053 1.8E-07 58.0 3.1 24 332-355 8-31 (211)
265 3kta_A Chromosome segregation 95.6 0.0067 2.3E-07 55.9 3.7 34 322-355 18-51 (182)
266 3a00_A Guanylate kinase, GMP k 95.6 0.0067 2.3E-07 56.7 3.7 25 331-355 2-26 (186)
267 1g5t_A COB(I)alamin adenosyltr 95.6 0.048 1.6E-06 52.8 9.7 33 329-361 27-62 (196)
268 1zu4_A FTSY; GTPase, signal re 95.6 0.023 7.9E-07 58.6 7.9 42 322-363 96-141 (320)
269 3thx_A DNA mismatch repair pro 95.6 0.0077 2.6E-07 70.8 4.8 34 319-352 650-684 (934)
270 1lvg_A Guanylate kinase, GMP k 95.6 0.0069 2.3E-07 57.6 3.6 25 331-355 5-29 (198)
271 3lda_A DNA repair protein RAD5 95.6 0.022 7.6E-07 60.7 7.9 25 328-352 175-200 (400)
272 2yvu_A Probable adenylyl-sulfa 95.6 0.0077 2.7E-07 55.9 3.8 33 331-363 14-49 (186)
273 1v5w_A DMC1, meiotic recombina 95.6 0.019 6.4E-07 59.5 7.1 38 328-365 119-166 (343)
274 1rz3_A Hypothetical protein rb 95.5 0.027 9.2E-07 53.3 7.6 30 332-361 24-56 (201)
275 3b5x_A Lipid A export ATP-bind 95.5 0.0055 1.9E-07 68.0 3.1 48 318-365 356-406 (582)
276 1q3t_A Cytidylate kinase; nucl 95.5 0.0081 2.8E-07 58.3 3.9 30 331-360 17-46 (236)
277 3tau_A Guanylate kinase, GMP k 95.5 0.0068 2.3E-07 57.8 3.3 26 331-356 9-34 (208)
278 1xp8_A RECA protein, recombina 95.5 0.015 5.1E-07 61.3 6.2 81 329-409 72-166 (366)
279 1w36_D RECD, exodeoxyribonucle 95.5 0.018 6E-07 64.5 7.0 24 331-354 165-188 (608)
280 1ltq_A Polynucleotide kinase; 95.4 0.0058 2E-07 61.1 2.5 29 331-359 3-32 (301)
281 1uj2_A Uridine-cytidine kinase 95.4 0.0087 3E-07 58.7 3.8 27 332-358 24-50 (252)
282 3cmw_A Protein RECA, recombina 95.3 0.024 8.3E-07 70.2 8.2 79 331-409 733-824 (1706)
283 3foz_A TRNA delta(2)-isopenten 95.2 0.0091 3.1E-07 61.9 3.5 33 331-363 11-43 (316)
284 1ex7_A Guanylate kinase; subst 95.2 0.012 4.2E-07 56.2 4.1 28 331-358 2-29 (186)
285 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 57.8 3.7 27 329-355 14-41 (219)
286 1m7g_A Adenylylsulfate kinase; 95.2 0.012 4.3E-07 55.9 4.1 35 331-365 26-64 (211)
287 3b60_A Lipid A export ATP-bind 95.2 0.0051 1.7E-07 68.2 1.5 38 318-355 356-394 (582)
288 3d3q_A TRNA delta(2)-isopenten 95.1 0.01 3.5E-07 62.1 3.5 31 332-362 9-39 (340)
289 3e70_C DPA, signal recognition 95.1 0.026 8.9E-07 58.5 6.5 23 332-354 131-153 (328)
290 2qmh_A HPR kinase/phosphorylas 95.1 0.0092 3.1E-07 58.2 2.8 42 321-363 25-66 (205)
291 4eaq_A DTMP kinase, thymidylat 95.1 0.013 4.6E-07 57.2 4.0 24 332-355 28-51 (229)
292 3fdi_A Uncharacterized protein 95.1 0.014 4.8E-07 55.9 4.0 29 332-360 8-36 (201)
293 1wb9_A DNA mismatch repair pro 95.1 0.018 6.1E-07 66.7 5.5 36 318-354 595-631 (800)
294 3exa_A TRNA delta(2)-isopenten 95.1 0.01 3.6E-07 61.6 3.2 32 331-362 4-35 (322)
295 1sq5_A Pantothenate kinase; P- 95.0 0.0045 1.5E-07 63.1 0.4 23 333-355 83-105 (308)
296 3aez_A Pantothenate kinase; tr 95.0 0.016 5.3E-07 59.6 4.3 27 329-355 88-115 (312)
297 3euj_A Chromosome partition pr 95.0 0.011 3.6E-07 64.8 3.1 36 318-354 17-53 (483)
298 2yl4_A ATP-binding cassette SU 94.9 0.0049 1.7E-07 68.6 0.3 37 319-355 358-395 (595)
299 2obl_A ESCN; ATPase, hydrolase 94.9 0.01 3.5E-07 62.0 2.6 32 326-357 66-98 (347)
300 2f6r_A COA synthase, bifunctio 94.9 0.012 4.1E-07 59.2 3.1 28 332-360 77-104 (281)
301 3zvl_A Bifunctional polynucleo 94.9 0.0097 3.3E-07 63.3 2.5 29 331-359 259-287 (416)
302 2dpy_A FLII, flagellum-specifi 94.8 0.011 3.8E-07 63.6 2.9 35 322-357 149-184 (438)
303 2qm8_A GTPase/ATPase; G protei 94.8 0.0097 3.3E-07 61.7 2.1 34 321-354 45-79 (337)
304 3ney_A 55 kDa erythrocyte memb 94.8 0.018 6.1E-07 55.7 3.8 25 331-355 20-44 (197)
305 1gtv_A TMK, thymidylate kinase 94.7 0.0081 2.8E-07 56.5 1.1 23 333-355 3-25 (214)
306 1lw7_A Transcriptional regulat 94.6 0.017 5.7E-07 60.1 3.5 33 324-356 161-196 (365)
307 3eph_A TRNA isopentenyltransfe 94.6 0.015 5.2E-07 62.2 3.3 32 331-362 3-34 (409)
308 2gza_A Type IV secretion syste 94.6 0.0048 1.7E-07 64.5 -0.8 25 331-355 176-200 (361)
309 2i1q_A DNA repair and recombin 94.6 0.034 1.2E-06 56.5 5.5 26 328-353 95-121 (322)
310 2j37_W Signal recognition part 94.5 0.13 4.4E-06 56.4 10.4 33 331-363 102-137 (504)
311 1yqt_A RNAse L inhibitor; ATP- 94.5 0.013 4.6E-07 64.6 2.6 34 320-354 37-71 (538)
312 3b6e_A Interferon-induced heli 94.5 0.031 1.1E-06 52.1 4.8 23 331-353 49-71 (216)
313 2o8b_B DNA mismatch repair pro 94.4 0.047 1.6E-06 64.8 7.0 34 318-351 769-810 (1022)
314 1m2o_B GTP-binding protein SAR 94.4 0.02 6.9E-07 53.1 3.1 33 320-352 13-45 (190)
315 1ewq_A DNA mismatch repair pro 94.3 0.025 8.5E-07 65.1 4.2 35 318-354 566-600 (765)
316 1xx6_A Thymidine kinase; NESG, 94.3 0.11 3.8E-06 49.6 8.1 31 332-362 10-43 (191)
317 3hdt_A Putative kinase; struct 94.2 0.027 9.2E-07 55.2 3.8 29 332-360 16-44 (223)
318 3b85_A Phosphate starvation-in 94.2 0.018 6.3E-07 55.6 2.5 22 332-353 24-45 (208)
319 2axn_A 6-phosphofructo-2-kinas 94.2 0.053 1.8E-06 59.5 6.4 26 331-356 36-61 (520)
320 1x6v_B Bifunctional 3'-phospho 94.1 0.035 1.2E-06 62.5 4.8 36 331-366 53-91 (630)
321 2ffh_A Protein (FFH); SRP54, s 94.1 0.078 2.7E-06 57.0 7.3 40 323-363 92-134 (425)
322 1j8m_F SRP54, signal recogniti 94.0 0.058 2E-06 55.0 5.9 40 324-363 92-134 (297)
323 3gmt_A Adenylate kinase; ssgci 94.0 0.031 1.1E-06 55.3 3.6 28 332-359 10-37 (230)
324 3ux8_A Excinuclease ABC, A sub 93.9 0.018 6.1E-07 64.9 2.0 33 319-351 336-369 (670)
325 1odf_A YGR205W, hypothetical 3 93.9 0.075 2.5E-06 54.0 6.4 24 332-355 33-56 (290)
326 3ux8_A Excinuclease ABC, A sub 93.9 0.024 8.2E-07 63.9 2.9 30 318-347 31-61 (670)
327 1rj9_A FTSY, signal recognitio 93.9 0.035 1.2E-06 56.9 3.8 24 331-354 103-126 (304)
328 1sky_E F1-ATPase, F1-ATP synth 93.8 0.029 9.8E-07 61.2 3.2 24 331-354 152-175 (473)
329 2npi_A Protein CLP1; CLP1-PCF1 93.8 0.018 6E-07 62.5 1.5 23 332-354 140-162 (460)
330 2ewv_A Twitching motility prot 93.7 0.034 1.2E-06 58.4 3.5 24 331-354 137-160 (372)
331 3bk7_A ABC transporter ATP-bin 93.7 0.022 7.5E-07 63.9 2.1 34 320-354 107-141 (607)
332 1z6t_A APAF-1, apoptotic prote 93.6 0.055 1.9E-06 59.1 5.2 45 278-352 125-169 (591)
333 1nlf_A Regulatory protein REPA 93.6 0.036 1.2E-06 55.0 3.4 27 328-354 27-54 (279)
334 2qag_B Septin-6, protein NEDD5 93.6 0.019 6.6E-07 61.8 1.4 33 321-353 30-65 (427)
335 4aby_A DNA repair protein RECN 93.5 0.012 4.2E-07 61.5 -0.1 36 320-355 50-85 (415)
336 1t6n_A Probable ATP-dependent 93.5 0.46 1.6E-05 44.7 10.9 22 331-352 52-73 (220)
337 3ice_A Transcription terminati 93.5 0.11 3.9E-06 55.5 7.2 31 324-354 167-198 (422)
338 2iw3_A Elongation factor 3A; a 93.5 0.024 8.3E-07 66.8 2.1 34 319-352 449-483 (986)
339 2zts_A Putative uncharacterize 93.4 0.089 3E-06 50.1 5.6 37 328-364 27-68 (251)
340 4b3f_X DNA-binding protein smu 93.4 0.11 3.9E-06 58.1 7.3 20 331-350 206-225 (646)
341 1yqt_A RNAse L inhibitor; ATP- 93.4 0.027 9.1E-07 62.1 2.1 34 321-354 302-336 (538)
342 1p9r_A General secretion pathw 93.3 0.031 1.1E-06 59.9 2.4 25 331-355 168-192 (418)
343 1ls1_A Signal recognition part 93.3 0.081 2.8E-06 53.7 5.4 41 322-363 91-134 (295)
344 1a7j_A Phosphoribulokinase; tr 93.2 0.022 7.4E-07 57.8 1.1 35 332-366 7-44 (290)
345 3bk7_A ABC transporter ATP-bin 93.1 0.031 1.1E-06 62.6 2.1 34 321-354 372-406 (607)
346 3tqc_A Pantothenate kinase; bi 93.1 0.052 1.8E-06 56.2 3.6 23 333-355 95-117 (321)
347 3ozx_A RNAse L inhibitor; ATP 93.1 0.027 9.3E-07 62.2 1.6 33 322-354 285-318 (538)
348 2px0_A Flagellar biosynthesis 93.0 0.059 2E-06 54.8 4.0 34 330-363 105-142 (296)
349 3sop_A Neuronal-specific septi 93.0 0.049 1.7E-06 54.7 3.2 23 332-354 4-26 (270)
350 2oap_1 GSPE-2, type II secreti 92.9 0.072 2.5E-06 58.5 4.6 34 331-364 261-296 (511)
351 1f6b_A SAR1; gtpases, N-termin 92.8 0.028 9.5E-07 52.6 1.1 28 324-351 19-46 (198)
352 1f2t_A RAD50 ABC-ATPase; DNA d 92.8 0.06 2E-06 49.0 3.3 30 325-354 18-47 (149)
353 3j16_B RLI1P; ribosome recycli 92.8 0.042 1.4E-06 61.6 2.7 35 320-354 362-402 (608)
354 2iut_A DNA translocase FTSK; n 92.7 0.58 2E-05 52.1 11.6 35 331-365 215-256 (574)
355 2f1r_A Molybdopterin-guanine d 92.7 0.033 1.1E-06 52.3 1.4 24 332-355 4-27 (171)
356 1tq4_A IIGP1, interferon-induc 92.7 0.019 6.5E-07 61.5 -0.3 23 332-354 71-93 (413)
357 2f9l_A RAB11B, member RAS onco 92.7 0.063 2.2E-06 49.9 3.3 23 331-353 6-28 (199)
358 2iw3_A Elongation factor 3A; a 92.7 0.02 7E-07 67.5 -0.1 37 319-355 687-724 (986)
359 1w4r_A Thymidine kinase; type 92.6 0.48 1.7E-05 45.7 9.5 31 333-363 23-56 (195)
360 1oix_A RAS-related protein RAB 92.5 0.062 2.1E-06 49.9 3.0 24 331-354 30-53 (191)
361 3qf7_A RAD50; ABC-ATPase, ATPa 92.5 0.048 1.6E-06 57.0 2.5 34 321-354 14-47 (365)
362 3tqf_A HPR(Ser) kinase; transf 92.5 0.061 2.1E-06 51.4 2.9 30 324-353 10-39 (181)
363 1m8p_A Sulfate adenylyltransfe 92.4 0.075 2.6E-06 59.1 4.0 35 331-365 397-435 (573)
364 2lkc_A Translation initiation 92.3 0.095 3.2E-06 47.0 3.9 23 330-352 8-30 (178)
365 1bif_A 6-phosphofructo-2-kinas 92.3 0.048 1.6E-06 58.7 2.3 26 331-356 40-65 (469)
366 2ocp_A DGK, deoxyguanosine kin 92.3 0.071 2.4E-06 51.7 3.2 25 331-355 3-27 (241)
367 2j9r_A Thymidine kinase; TK1, 92.2 0.39 1.3E-05 47.0 8.5 29 335-363 33-64 (214)
368 2o5v_A DNA replication and rep 92.2 0.081 2.8E-06 55.5 3.8 35 320-354 16-50 (359)
369 2r8r_A Sensor protein; KDPD, P 92.2 0.12 4.2E-06 51.1 4.8 33 331-363 7-42 (228)
370 4edh_A DTMP kinase, thymidylat 92.2 0.08 2.7E-06 51.3 3.5 24 332-355 8-31 (213)
371 2a5y_B CED-4; apoptosis; HET: 92.1 0.14 4.7E-06 56.1 5.7 44 280-352 131-174 (549)
372 2vp4_A Deoxynucleoside kinase; 92.1 0.076 2.6E-06 51.3 3.2 21 333-353 23-43 (230)
373 2p67_A LAO/AO transport system 92.1 0.11 3.7E-06 53.6 4.5 23 332-354 58-80 (341)
374 1np6_A Molybdopterin-guanine d 92.1 0.088 3E-06 49.5 3.5 24 331-354 7-30 (174)
375 2dyk_A GTP-binding protein; GT 92.0 0.086 2.9E-06 46.3 3.2 23 331-353 2-24 (161)
376 1xjc_A MOBB protein homolog; s 92.0 0.091 3.1E-06 49.5 3.5 24 331-354 5-28 (169)
377 1g8f_A Sulfate adenylyltransfe 91.9 0.075 2.6E-06 58.4 3.2 26 331-356 396-421 (511)
378 3vkw_A Replicase large subunit 91.9 0.15 5.2E-06 55.1 5.5 22 331-352 162-183 (446)
379 1p5z_B DCK, deoxycytidine kina 91.9 0.04 1.4E-06 54.2 0.9 25 331-355 25-49 (263)
380 1u8z_A RAS-related protein RAL 91.9 0.093 3.2E-06 46.1 3.2 23 331-353 5-27 (168)
381 3cr8_A Sulfate adenylyltranfer 91.8 0.056 1.9E-06 59.9 2.1 35 332-366 371-409 (552)
382 1nrj_B SR-beta, signal recogni 91.8 0.1 3.5E-06 48.9 3.6 24 331-354 13-36 (218)
383 1z2a_A RAS-related protein RAB 91.8 0.099 3.4E-06 46.1 3.3 23 331-353 6-28 (168)
384 3v9p_A DTMP kinase, thymidylat 91.8 0.079 2.7E-06 52.1 2.9 23 332-354 27-49 (227)
385 1ek0_A Protein (GTP-binding pr 91.7 0.091 3.1E-06 46.4 3.0 23 331-353 4-26 (170)
386 2wjg_A FEOB, ferrous iron tran 91.6 0.093 3.2E-06 47.7 3.1 22 331-352 8-29 (188)
387 1kao_A RAP2A; GTP-binding prot 91.6 0.1 3.5E-06 45.8 3.1 23 331-353 4-26 (167)
388 2ce2_X GTPase HRAS; signaling 91.6 0.098 3.4E-06 45.7 3.0 23 331-353 4-26 (166)
389 2zej_A Dardarin, leucine-rich 91.5 0.084 2.9E-06 48.4 2.6 22 331-352 3-24 (184)
390 2r6a_A DNAB helicase, replicat 91.5 0.1 3.6E-06 55.8 3.7 44 321-364 193-241 (454)
391 1pui_A ENGB, probable GTP-bind 91.5 0.064 2.2E-06 49.9 1.8 27 326-352 21-48 (210)
392 2v3c_C SRP54, signal recogniti 91.5 0.11 3.9E-06 55.7 4.0 34 331-364 100-136 (432)
393 2wji_A Ferrous iron transport 91.4 0.11 3.6E-06 46.8 3.1 22 331-352 4-25 (165)
394 2qnr_A Septin-2, protein NEDD5 91.4 0.072 2.5E-06 54.1 2.2 28 320-352 13-40 (301)
395 4ag6_A VIRB4 ATPase, type IV s 91.4 0.18 6.3E-06 52.5 5.4 34 329-362 34-70 (392)
396 1c9k_A COBU, adenosylcobinamid 91.3 0.11 3.9E-06 49.4 3.3 31 333-364 2-32 (180)
397 2ged_A SR-beta, signal recogni 91.3 0.13 4.4E-06 47.0 3.6 23 331-353 49-71 (193)
398 3p32_A Probable GTPase RV1496/ 91.2 0.22 7.4E-06 51.6 5.7 32 331-362 80-114 (355)
399 2rcn_A Probable GTPase ENGC; Y 91.2 0.065 2.2E-06 56.3 1.7 37 319-355 204-240 (358)
400 1z0j_A RAB-22, RAS-related pro 91.1 0.13 4.3E-06 45.5 3.3 24 331-354 7-30 (170)
401 3tmk_A Thymidylate kinase; pho 91.1 0.16 5.4E-06 49.5 4.3 27 331-357 6-32 (216)
402 2nzj_A GTP-binding protein REM 91.1 0.12 4.1E-06 46.0 3.1 22 331-352 5-26 (175)
403 4i1u_A Dephospho-COA kinase; s 91.1 0.12 4.2E-06 50.3 3.4 31 332-363 11-41 (210)
404 2qag_C Septin-7; cell cycle, c 91.0 0.099 3.4E-06 56.0 2.9 31 319-354 25-55 (418)
405 2gk6_A Regulator of nonsense t 91.0 0.21 7.1E-06 55.8 5.7 23 331-353 196-218 (624)
406 3lv8_A DTMP kinase, thymidylat 91.0 0.12 4E-06 51.1 3.2 24 331-354 28-51 (236)
407 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.13 4.6E-06 45.9 3.3 22 331-352 8-29 (177)
408 1xti_A Probable ATP-dependent 90.9 1.6 5.4E-05 44.1 11.8 21 331-351 46-66 (391)
409 1z08_A RAS-related protein RAB 90.9 0.13 4.6E-06 45.4 3.3 23 331-353 7-29 (170)
410 3qks_A DNA double-strand break 90.8 0.15 5E-06 48.7 3.7 32 325-356 18-49 (203)
411 1ky3_A GTP-binding protein YPT 90.8 0.14 4.7E-06 45.8 3.3 23 331-353 9-31 (182)
412 3bh0_A DNAB-like replicative h 90.8 0.12 4.2E-06 52.6 3.3 44 321-364 58-105 (315)
413 1c1y_A RAS-related protein RAP 90.8 0.13 4.6E-06 45.2 3.2 22 331-352 4-25 (167)
414 2erx_A GTP-binding protein DI- 90.8 0.13 4.5E-06 45.4 3.1 22 331-352 4-25 (172)
415 1g16_A RAS-related protein SEC 90.7 0.13 4.5E-06 45.4 3.0 22 331-352 4-25 (170)
416 3bc1_A RAS-related protein RAB 90.7 0.14 4.9E-06 46.1 3.3 22 331-352 12-33 (195)
417 1r2q_A RAS-related protein RAB 90.7 0.15 5E-06 45.0 3.3 22 331-352 7-28 (170)
418 3q85_A GTP-binding protein REM 90.7 0.14 4.7E-06 45.4 3.1 20 332-351 4-23 (169)
419 1r8s_A ADP-ribosylation factor 90.5 0.16 5.3E-06 44.9 3.3 22 332-353 2-23 (164)
420 4tmk_A Protein (thymidylate ki 90.5 0.14 4.8E-06 49.7 3.2 23 332-354 5-27 (213)
421 3ld9_A DTMP kinase, thymidylat 90.4 0.16 5.3E-06 49.9 3.5 25 332-356 23-47 (223)
422 3q72_A GTP-binding protein RAD 90.4 0.13 4.5E-06 45.4 2.7 21 331-351 3-23 (166)
423 1tf7_A KAIC; homohexamer, hexa 90.3 0.16 5.3E-06 55.5 3.7 26 329-354 279-305 (525)
424 1z0f_A RAB14, member RAS oncog 90.3 0.17 5.7E-06 45.1 3.3 23 331-353 16-38 (179)
425 3ozx_A RNAse L inhibitor; ATP 90.2 0.11 3.6E-06 57.5 2.3 25 330-354 24-49 (538)
426 1upt_A ARL1, ADP-ribosylation 90.2 0.19 6.4E-06 44.5 3.6 22 331-352 8-29 (171)
427 2a9k_A RAS-related protein RAL 90.2 0.17 5.8E-06 45.4 3.3 23 331-353 19-41 (187)
428 4dsu_A GTPase KRAS, isoform 2B 90.1 0.17 5.8E-06 45.6 3.3 23 331-353 5-27 (189)
429 2g6b_A RAS-related protein RAB 90.1 0.17 5.8E-06 45.3 3.3 23 331-353 11-33 (180)
430 3tw8_B RAS-related protein RAB 90.1 0.15 5.2E-06 45.5 2.9 21 331-351 10-30 (181)
431 2fn4_A P23, RAS-related protei 90.1 0.16 5.4E-06 45.4 3.0 23 331-353 10-32 (181)
432 3con_A GTPase NRAS; structural 90.1 0.17 5.9E-06 46.0 3.3 23 331-353 22-44 (190)
433 1e69_A Chromosome segregation 90.1 0.14 4.7E-06 52.2 2.9 32 323-354 17-48 (322)
434 3j16_B RLI1P; ribosome recycli 90.1 0.13 4.4E-06 57.7 2.9 27 328-354 100-127 (608)
435 3clv_A RAB5 protein, putative; 90.1 0.17 5.9E-06 45.7 3.3 23 331-353 8-30 (208)
436 2y8e_A RAB-protein 6, GH09086P 90.0 0.16 5.6E-06 45.2 3.0 22 331-352 15-36 (179)
437 3t1o_A Gliding protein MGLA; G 90.0 0.18 6.1E-06 45.7 3.3 24 331-354 15-38 (198)
438 2gj8_A MNME, tRNA modification 90.0 0.15 5.2E-06 46.4 2.8 23 331-353 5-27 (172)
439 2hxs_A RAB-26, RAS-related pro 89.9 0.17 5.9E-06 45.2 3.1 22 331-352 7-28 (178)
440 3sfz_A APAF-1, apoptotic pepti 89.9 0.24 8.4E-06 58.0 5.2 46 278-353 125-170 (1249)
441 2oil_A CATX-8, RAS-related pro 89.9 0.18 6.2E-06 46.1 3.3 23 331-353 26-48 (193)
442 3ihw_A Centg3; RAS, centaurin, 89.8 0.18 6.1E-06 46.4 3.3 24 330-353 20-43 (184)
443 2efe_B Small GTP-binding prote 89.8 0.19 6.5E-06 45.1 3.3 23 331-353 13-35 (181)
444 3kkq_A RAS-related protein M-R 89.7 0.2 6.7E-06 45.3 3.3 23 331-353 19-41 (183)
445 2wsm_A Hydrogenase expression/ 89.6 0.19 6.4E-06 47.3 3.2 25 331-355 31-55 (221)
446 1mh1_A RAC1; GTP-binding, GTPa 89.6 0.2 6.9E-06 45.0 3.3 22 331-352 6-27 (186)
447 1m7b_A RND3/RHOE small GTP-bin 89.6 0.18 6.2E-06 45.9 3.0 23 331-353 8-30 (184)
448 2bme_A RAB4A, RAS-related prot 89.5 0.18 6.3E-06 45.5 3.0 23 331-353 11-33 (186)
449 2www_A Methylmalonic aciduria 89.5 0.62 2.1E-05 48.2 7.4 24 331-354 75-98 (349)
450 1svi_A GTP-binding protein YSX 89.5 0.19 6.4E-06 45.9 3.1 22 331-352 24-45 (195)
451 2cxx_A Probable GTP-binding pr 89.4 0.17 6E-06 45.7 2.8 21 332-352 3-23 (190)
452 3pqc_A Probable GTP-binding pr 89.4 0.19 6.5E-06 45.5 3.0 23 331-353 24-46 (195)
453 3tkl_A RAS-related protein RAB 89.3 0.21 7.3E-06 45.4 3.3 23 331-353 17-39 (196)
454 3hjn_A DTMP kinase, thymidylat 89.3 0.33 1.1E-05 46.1 4.7 29 333-361 3-34 (197)
455 3bwd_D RAC-like GTP-binding pr 89.3 0.22 7.6E-06 44.7 3.3 22 331-352 9-30 (182)
456 1yrb_A ATP(GTP)binding protein 89.2 0.33 1.1E-05 46.9 4.8 32 331-362 15-48 (262)
457 2gf9_A RAS-related protein RAB 89.2 0.22 7.6E-06 45.4 3.3 23 331-353 23-45 (189)
458 2bov_A RAla, RAS-related prote 89.1 0.22 7.6E-06 45.7 3.3 23 331-353 15-37 (206)
459 2ygr_A Uvrabc system protein A 89.1 0.12 4.2E-06 60.9 1.8 32 319-350 656-688 (993)
460 2wjy_A Regulator of nonsense t 89.1 0.36 1.2E-05 55.8 5.7 24 330-353 371-394 (800)
461 2gks_A Bifunctional SAT/APS ki 89.1 0.29 1E-05 54.0 4.8 33 331-363 373-408 (546)
462 1x3s_A RAS-related protein RAB 89.0 0.23 7.9E-06 45.0 3.3 23 331-353 16-38 (195)
463 2vf7_A UVRA2, excinuclease ABC 89.0 0.072 2.5E-06 61.9 -0.2 33 320-352 512-546 (842)
464 2q6t_A DNAB replication FORK h 89.0 0.34 1.2E-05 51.6 5.1 37 328-364 197-238 (444)
465 1ko7_A HPR kinase/phosphatase; 88.9 0.17 5.8E-06 52.3 2.5 33 321-353 135-167 (314)
466 1vg8_A RAS-related protein RAB 88.9 0.23 8E-06 45.7 3.3 23 331-353 9-31 (207)
467 2atv_A RERG, RAS-like estrogen 88.8 0.24 8.2E-06 45.6 3.3 23 331-353 29-51 (196)
468 3k53_A Ferrous iron transport 88.8 0.2 6.9E-06 49.4 2.9 23 331-353 4-26 (271)
469 4hlc_A DTMP kinase, thymidylat 88.8 0.25 8.5E-06 47.4 3.5 23 333-355 5-27 (205)
470 2a5j_A RAS-related protein RAB 88.7 0.25 8.7E-06 45.2 3.3 22 331-352 22-43 (191)
471 3t5g_A GTP-binding protein RHE 88.6 0.22 7.6E-06 44.8 2.9 22 331-352 7-28 (181)
472 3reg_A RHO-like small GTPase; 88.6 0.26 8.7E-06 45.2 3.3 23 331-353 24-46 (194)
473 1z06_A RAS-related protein RAB 88.6 0.26 8.7E-06 45.0 3.3 22 331-352 21-42 (189)
474 3qkt_A DNA double-strand break 88.6 0.17 5.9E-06 51.9 2.4 29 326-354 19-47 (339)
475 2iwr_A Centaurin gamma 1; ANK 88.6 0.19 6.5E-06 45.1 2.4 23 331-353 8-30 (178)
476 1zd9_A ADP-ribosylation factor 88.6 0.26 8.8E-06 45.1 3.3 22 331-352 23-44 (188)
477 1zbd_A Rabphilin-3A; G protein 88.6 0.24 8.3E-06 45.6 3.1 22 331-352 9-30 (203)
478 2hf9_A Probable hydrogenase ni 88.6 0.24 8.4E-06 46.6 3.2 24 331-354 39-62 (226)
479 3c5c_A RAS-like protein 12; GD 88.5 0.26 8.8E-06 45.3 3.3 23 331-353 22-44 (187)
480 3dz8_A RAS-related protein RAB 88.5 0.24 8.1E-06 45.4 3.0 24 331-354 24-47 (191)
481 2p5s_A RAS and EF-hand domain 88.5 0.26 9E-06 45.5 3.3 22 331-352 29-50 (199)
482 2yv5_A YJEQ protein; hydrolase 88.5 0.25 8.7E-06 50.1 3.5 25 329-354 164-188 (302)
483 1e9r_A Conjugal transfer prote 88.5 0.33 1.1E-05 51.1 4.5 35 329-363 52-89 (437)
484 2fg5_A RAB-22B, RAS-related pr 88.4 0.24 8.2E-06 45.5 3.0 23 331-353 24-46 (192)
485 2r6f_A Excinuclease ABC subuni 88.4 0.11 3.9E-06 61.0 0.9 32 319-350 638-670 (972)
486 2gf0_A GTP-binding protein DI- 88.3 0.25 8.6E-06 45.1 3.0 22 331-352 9-30 (199)
487 3cph_A RAS-related protein SEC 88.2 0.28 9.5E-06 45.4 3.3 22 331-352 21-42 (213)
488 4a1f_A DNAB helicase, replicat 88.2 0.23 7.8E-06 51.7 3.0 38 327-364 42-83 (338)
489 1moz_A ARL1, ADP-ribosylation 88.2 0.17 6E-06 45.5 1.8 21 331-351 19-39 (183)
490 3oes_A GTPase rhebl1; small GT 88.2 0.26 8.7E-06 45.7 3.0 23 331-353 25-47 (201)
491 3lxx_A GTPase IMAP family memb 88.2 0.25 8.7E-06 47.4 3.1 22 331-352 30-51 (239)
492 2bcg_Y Protein YP2, GTP-bindin 88.2 0.26 8.7E-06 45.7 3.0 22 331-352 9-30 (206)
493 1ksh_A ARF-like protein 2; sma 88.1 0.26 9E-06 44.6 3.0 22 331-352 19-40 (186)
494 4bas_A ADP-ribosylation factor 88.0 0.24 8.3E-06 45.2 2.7 22 330-351 17-38 (199)
495 2fh5_B SR-beta, signal recogni 88.0 0.3 1E-05 45.5 3.4 23 331-353 8-30 (214)
496 1fzq_A ADP-ribosylation factor 88.0 0.24 8.3E-06 45.2 2.7 22 331-352 17-38 (181)
497 3t34_A Dynamin-related protein 87.9 0.29 9.9E-06 50.5 3.6 32 319-352 25-56 (360)
498 1vt4_I APAF-1 related killer D 87.9 0.38 1.3E-05 57.4 4.9 44 278-352 129-172 (1221)
499 1qhl_A Protein (cell division 87.9 0.1 3.5E-06 51.3 0.1 28 328-355 25-52 (227)
500 1u0l_A Probable GTPase ENGC; p 87.8 0.23 7.7E-06 50.3 2.6 24 331-354 170-193 (301)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=1.3e-33 Score=295.50 Aligned_cols=292 Identities=59% Similarity=0.948 Sum_probs=225.2
Q ss_pred CCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCCh
Q 008014 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (581)
Q Consensus 264 ~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGK 343 (581)
+..+|+++.+.|++.|+||+.+|+.|..++..++.+....... .....++.++||+|||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-----------------~~~~~~~~~vll~GppGtGK 64 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-----------------NGVELGKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCS-----------------SSCCCCCCCEEEECCTTSSH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccc-----------------ccccCCCCeEEEECCCCCCH
Confidence 3568999999999999999999999999998777665432211 11223457999999999999
Q ss_pred HHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 344 TtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
|++|++||+.++.+|+.++++++...+|+|++....+..++..+...+..+.++||||||||++...+...+.+.+.+++
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 99999999999999999999998877899987777888888887666667789999999999999887666666667777
Q ss_pred hHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcc-cCCCCCChhhhhhhcCCCch
Q 008014 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTD 502 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd-~~IgF~~P~~e~~~~~~~~~ 502 (581)
++|+.||++|||..+.+++.+....+..+.+++.++|++||+++++.++++++.++... ..++|........ .
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~------~ 218 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS------D 218 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------C
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccc------c
Confidence 79999999999888888877777777778889999999999999999999999887665 6788876544321 1
Q ss_pred HHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 503 ~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
......+.+.+.++++.+++|.|+|++||+.++.|.+++.+++.+|+...++.+.++|.+.++..++.+.+++++.
T Consensus 219 ~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~ 294 (363)
T 3hws_A 219 KASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 294 (363)
T ss_dssp CSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred chhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHH
Confidence 1235678888999999999999999999999999999999999999998777899999999999999999998764
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.97 E-value=5.2e-31 Score=276.64 Aligned_cols=295 Identities=52% Similarity=0.857 Sum_probs=209.9
Q ss_pred CCCCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhh----------hcccccCCCCCCCCCCCCCCcccccCcc
Q 008014 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNES----------SQKRSAGESSSCTTDGVDDDTVELEKSN 332 (581)
Q Consensus 263 ~~~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~----------~~~~~~~~~~~~~~~~l~~v~~~v~~~~ 332 (581)
....+++++.+.|+++|+||+++|+.|..++.+|+++...+. .++.. +...+..++.+
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~------------~~~~~~~~~~~ 74 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELE------------HLEEVELSKSN 74 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH------------HHHHTTCCCCC
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc------------cccccccCCCC
Confidence 346789999999999999999999999999988887765432 00000 00001123478
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhh
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~ 412 (581)
+||+||||||||++|+++|+.++.+|+.++++.+...+|+|++....+...+......+..+.++||||||||++...+.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~ 154 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 154 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC
Confidence 99999999999999999999999999999999988778988876777777777665556667899999999999998866
Q ss_pred hcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhh
Q 008014 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (581)
Q Consensus 413 ~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~ 492 (581)
....+.+..++.+|+.|+++||+..+.++..+.........+++.++|+++|+++|+.++++++.+|.....++|+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~ 234 (376)
T 1um8_A 155 NRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKM 234 (376)
T ss_dssp ---------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSC
T ss_pred CCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhh
Confidence 65566677777799999999999988888888888788888899999999999999888999998877667788887654
Q ss_pred hhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEE
Q 008014 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAF 572 (581)
Q Consensus 493 e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~ 572 (581)
.... ...+.+.+.+.++.+..+.|+|++|++.++.|.+|+++++.+|+.+.++.+.++|.+.++..+..+.
T Consensus 235 ~~~~---------~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 305 (376)
T 1um8_A 235 SKKE---------QEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLI 305 (376)
T ss_dssp CTTT---------TTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEE
T ss_pred hccc---------hhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEE
Confidence 2100 0223445566677777899999999999999999999999999998888888999998888999999
Q ss_pred eccccc
Q 008014 573 YGKCFE 578 (581)
Q Consensus 573 ~~~~~~ 578 (581)
+++++.
T Consensus 306 ~~~~a~ 311 (376)
T 1um8_A 306 FEEEAI 311 (376)
T ss_dssp ECHHHH
T ss_pred ECHHHH
Confidence 998764
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.96 E-value=3.3e-29 Score=271.03 Aligned_cols=238 Identities=41% Similarity=0.653 Sum_probs=191.8
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChH
Q 008014 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (581)
Q Consensus 265 ~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKT 344 (581)
..+|+++.+.|+++|+||+++|+.|..++.++|++..... ......+++++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~------------------~~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE------------------PLRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCT------------------TTTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCCceEEEEcCCCCCHH
Confidence 4689999999999999999999999999998887743211 1112234589999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhh------------------------------------
Q 008014 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (581)
Q Consensus 345 tLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~------------------------------------ 388 (581)
++|+++|+.++.+|+.++++.+...+|+|++.+..++.++..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999988778999865666666654430
Q ss_pred ----------------------------------------hh--------------------------------------
Q 008014 389 ----------------------------------------YN-------------------------------------- 390 (581)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (581)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------HHh-hccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCC
Q 008014 391 --------------------VAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (581)
Q Consensus 391 --------------------l~~-a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~ 449 (581)
+.. ...+||++||||+++...+ +.++|++++++|++||++|||.++++
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 012 2578999999999986532 35788999999999999999988765
Q ss_pred CCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhc
Q 008014 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (581)
Q Consensus 450 ~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~ 529 (581)
+ ...+++++++|||+|+|.. . .+.| +.|||++
T Consensus 294 ~--~~~~d~~~ilfI~~gaf~~----------------~-------------------------~~~d-----lipel~~ 325 (444)
T 1g41_A 294 K--HGMVKTDHILFIASGAFQV----------------A-------------------------RPSD-----LIPELQG 325 (444)
T ss_dssp T--TEEEECTTCEEEEEECCSS----------------C-------------------------CGGG-----SCHHHHT
T ss_pred c--cceecCCcEEEEecccccc----------------C-------------------------Chhh-----cchHHhc
Confidence 1 2579999999999998752 0 1122 5699999
Q ss_pred ccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEecccccc
Q 008014 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFEI 579 (581)
Q Consensus 530 Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~~ 579 (581)
||+.++.|++|+++++.+|++++.+.+++||++++...|++++|+++|..
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~ 375 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 375 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHH
Confidence 99999999999999999999999999999999999999999999998753
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-24 Score=232.22 Aligned_cols=171 Identities=23% Similarity=0.376 Sum_probs=141.2
Q ss_pred cccChHHHHHHHHHHHHhh--HHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|++|.++|..+ ++.++...+.+ +++++||+||||||||++|+++|.+++
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---------------------~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIA---------------------QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999743 34455444433 248999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++.+|..++. ..|+||||||||++...|...+.+.+....++.+.||..|||
T Consensus 208 ~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 208 CKFIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp CEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred CCceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 999999999998 5799998 8999999998864 689999999999999987765555555555678899999995
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++++|+|||.++ +|.++. .+||+..|.|+.|+.+.
T Consensus 282 ~-------------------~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 282 F-------------------ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp T-------------------TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred c-------------------CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 2 1235688999999999 777665 47999999999999875
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.7e-24 Score=226.83 Aligned_cols=171 Identities=25% Similarity=0.350 Sum_probs=139.9
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|++|.+.|..+. +..+.....++ +++|||+||||||||++|+++|.+++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---------------------prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKP---------------------PKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---------------------CSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---------------------CCCCceECCCCchHHHHHHHHHHHhC
Confidence 48999999999999997543 34555444432 38999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++.+|..++. ..|+||||||||++...|...+.+.+....++.+.||..|||
T Consensus 242 ~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 242 ATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp CEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 999999999998 5799998 8899999988764 689999999999999988765555554445577888888884
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++++|+|||.++ +|.++. .+|||..|.|+.|+.+.
T Consensus 316 ~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~ 357 (437)
T 4b4t_I 316 F-------------------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357 (437)
T ss_dssp C-------------------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHH
T ss_pred c-------------------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHH
Confidence 2 1245688999999999 676665 47999999999999875
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-23 Score=225.15 Aligned_cols=171 Identities=21% Similarity=0.285 Sum_probs=139.2
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|+.|.+.|..+. +..+...+.+ ++++|||+||||||||++|+++|++++
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---------------------pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGID---------------------PPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---------------------CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 48999999999999986433 3444444332 348999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++.+|..++. ..|+||||||+|.+...|...+.+.+....++.+.||..|||
T Consensus 269 ~~fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 269 ATFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp CEEEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred CCeEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 999999999998 5799998 8999999998764 689999999999999988765544444445577888888885
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++++|+|||.++ +|.++. .+||+..|.|+.|+.+.
T Consensus 343 ~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 343 F-------------------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp S-------------------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred c-------------------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHH
Confidence 2 1245688999999988 777665 46999999999999875
No 7
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.89 E-value=1.8e-22 Score=203.13 Aligned_cols=236 Identities=41% Similarity=0.670 Sum_probs=177.9
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHH
Q 008014 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (581)
Q Consensus 266 ~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTt 345 (581)
.+|+++.+.|++.|+||+++++.|..++..++.+........ ....+.++||+||||||||+
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------------------HEVTPKNILMIGPTGVGKTE 65 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------------------HHCCCCCEEEECCTTSSHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------------------ccCCCceEEEECCCCCCHHH
Confidence 579999999999999999999999999875543321110000 00123789999999999999
Q ss_pred HHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHh-hccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 346 LAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~-a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
+|+++|+.++.+++.++++++...+|+|.+....+.+++......+.. ..++||||||+|++..... ..+.+..++.
T Consensus 66 la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~~ 143 (310)
T 1ofh_A 66 IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREG 143 (310)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHHH
T ss_pred HHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHHH
Confidence 999999999999999999998866899887666777777655333333 3579999999999987642 1233444455
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHH
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~ 504 (581)
+++.|+++||+..+... .-.+...++++|++++.... .|
T Consensus 144 ~~~~Ll~~le~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~----------------~~-------------- 182 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTK-----------HGMVKTDHILFIASGAFQVA----------------RP-------------- 182 (310)
T ss_dssp HHHHHHHHHHCCEEEET-----------TEEEECTTCEEEEEECCSSS----------------CG--------------
T ss_pred HHHHHHHHhcCCeEecc-----------cccccCCcEEEEEcCCcccC----------------Cc--------------
Confidence 79999999997655431 01345677888998763210 00
Q ss_pred HHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 505 ~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
. .+.|++++||+..+.+.+++++++.+|+++....+.++|.+.++..+..+.+++++.
T Consensus 183 -----------~-----~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (310)
T 1ofh_A 183 -----------S-----DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 240 (310)
T ss_dssp -----------G-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHH
T ss_pred -----------c-----cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHH
Confidence 0 267899999999999999999999999997776778888888888999999988765
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.5e-23 Score=224.66 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=157.3
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|.+++|+.|.+.|..+. +..+...+.+ ++++|||+||||||||++|+++|.+++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---------------------~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---------------------APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 48999999999999987543 3344444333 248999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++.+|..++. ..|+||||||||.+...|...+.+.+....++.+.||..|||
T Consensus 241 ~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 241 ATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred CCEEEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 999999999998 5799998 8899999988764 689999999999999988655444443334567889999985
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
.. ...++++|+|||.++ +|.++ +.+||+..|.|+.|+.+. ...+...+.+.+
T Consensus 315 ~~-------------------~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~-------R~~Il~~~~~~~ 368 (434)
T 4b4t_M 315 FS-------------------SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS-------RAQILQIHSRKM 368 (434)
T ss_dssp SC-------------------SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHH-------HHHHHHHHHHHS
T ss_pred cC-------------------CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHH-------HHHHHHHHhcCC
Confidence 21 134578899999988 66655 467999999999999875 122233333322
Q ss_pred cchhhhhcCCC-hhhhcccCeEEEcCCCCHHHHHHHHhhhHHH
Q 008014 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (581)
Q Consensus 514 ~~~dl~~~gl~-PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~ 555 (581)
... ..+. .++..+ ...++-.|+..++.+....
T Consensus 369 ~~~----~dvdl~~lA~~------t~G~sGADi~~l~~eA~~~ 401 (434)
T 4b4t_M 369 TTD----DDINWQELARS------TDEFNGAQLKAVTVEAGMI 401 (434)
T ss_dssp CBC----SCCCHHHHHHH------CSSCCHHHHHHHHHHHHHH
T ss_pred CCC----CcCCHHHHHHh------CCCCCHHHHHHHHHHHHHH
Confidence 211 1122 122222 2468999999988865443
No 9
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.7e-23 Score=224.53 Aligned_cols=171 Identities=24% Similarity=0.346 Sum_probs=139.0
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|+.|.+.|..+. +.++...+.+ +++++||+||||||||++|+++|.+++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---------------------~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIK---------------------PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 48999999999999997533 3444444333 248999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ +..++.+|..+.. ..|+||||||||++...|...+.+.+....++.+.||..|||
T Consensus 241 ~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 241 ANFIFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp CEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 999999999998 5799998 8889999988764 689999999999999988665544444445578889999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++++|+|||.++ +|.++. ++||+..|.|+.|+.+.
T Consensus 315 ~-------------------~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~ 356 (437)
T 4b4t_L 315 F-------------------DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356 (437)
T ss_dssp S-------------------SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHH
T ss_pred c-------------------cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHH
Confidence 2 1234578899999888 776654 56899999999999775
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.2e-23 Score=221.22 Aligned_cols=171 Identities=23% Similarity=0.368 Sum_probs=140.1
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|+.|.+.|..+. +..+...+.+ +++++||+||||||||++|+++|+.++
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---------------------~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGID---------------------PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 58999999999999997443 3444444433 248999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ +..++.+|..++. ..|+||||||+|++...|.....+.+....++.+.||..|||
T Consensus 232 ~~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 232 AAFIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp CEEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 999999999988 5799998 8899999988764 679999999999999988766555555556688999999995
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCC-Chhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFG-APVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~-~P~~e~ 494 (581)
. -...++++|+|||.++ +|.++. .+||+..|.|+ .|+++.
T Consensus 306 ~-------------------~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 306 F-------------------DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp S-------------------CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred C-------------------CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 2 1245688999999998 777665 46999999996 788764
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.84 E-value=1.2e-21 Score=225.22 Aligned_cols=220 Identities=19% Similarity=0.250 Sum_probs=139.0
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|+.|.+.+....+ ..+.... . .+++++||+||||||||++|+++|.+++
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g--------------------~-~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFG--------------------M-TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSC--------------------C-CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcC--------------------C-CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 479999999999999863222 1111111 1 1347899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|++ ++.++++|..++. ..|+||||||||++...|+....+.+...+++.++||..|||
T Consensus 537 ~~f~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 537 ANFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp CEEEECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred CceEEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 999999999988 5799998 8999999998863 679999999999999988654433343445699999999996
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
. -...++++|+|||.++ +|.++. .+||++.|.|+.|+.+. ..++++..
T Consensus 611 ~-------------------~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~-----------R~~il~~~ 660 (806)
T 3cf2_A 611 M-------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS-----------RVAILKAN 660 (806)
T ss_dssp S-------------------CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH-----------HHHTTTTT
T ss_pred C-------------------CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH-----------HHHHHHHH
Confidence 2 1234688999999999 777665 46999999999998765 22333322
Q ss_pred cchhhhhcCCChhhhcccCeEE-EcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLV-SLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV-~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.. +..+.+++ -+..+. ..+.+|-.|+..++.+....-+++.
T Consensus 661 l~----~~~~~~~~--dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 661 LR----KSPVAKDV--DLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SS----CC--CCC------------------CHHHHHHHHHHHHHHHH
T ss_pred hc----CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 11111111 011122 2345888899999887766555543
No 12
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.83 E-value=9.4e-20 Score=207.90 Aligned_cols=228 Identities=20% Similarity=0.297 Sum_probs=157.5
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
+..+++.|.+.|+||+++++.+..++.. ...+.. .++ .+.+++||+||||||||++|
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~----~~~g~~--------~~~-----------~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKM----ARAGLG--------HEH-----------KPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHH----HHTTCS--------CTT-----------SCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHH----HhcccC--------CCC-----------CCceEEEEECCCCCcHHHHH
Confidence 5567888999999999999999888742 111110 111 12358999999999999999
Q ss_pred HHHHHHhCCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhccc
Q 008014 348 KTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (581)
Q Consensus 348 raLA~~l~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~ 416 (581)
+++|+.++.+++.++|+++.+ .+|+|.+....+.+.+. .+.++||||||||++.++
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~vl~lDEi~~~~~~------ 572 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVLLLDEIEKAHPD------ 572 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH-------HCSSEEEEEETGGGSCHH------
T ss_pred HHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH-------hCCCcEEEEeCccccCHH------
Confidence 999999999999999998753 24666553344433332 345789999999999887
Q ss_pred CCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhh
Q 008014 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (581)
Q Consensus 417 ~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~ 496 (581)
+++.|+++||++.++.. ....++..|+++|+|+|... +.+. +..++|.....+
T Consensus 573 --------~~~~Ll~~le~~~~~~~----------~g~~~~~~~~~iI~tsN~~~-~~~~-----~~~~g~~~~~~~--- 625 (758)
T 1r6b_X 573 --------VFNILLQVMDNGTLTDN----------NGRKADFRNVVLVMTTNAGV-RETE-----RKSIGLIHQDNS--- 625 (758)
T ss_dssp --------HHHHHHHHHHHSEEEET----------TTEEEECTTEEEEEEECSSC-C-----------------------
T ss_pred --------HHHHHHHHhcCcEEEcC----------CCCEEecCCeEEEEecCcch-hhhh-----hcccCccccchH---
Confidence 99999999996655431 12457778999999999643 1111 112344321100
Q ss_pred cCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccc
Q 008014 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKC 576 (581)
Q Consensus 497 ~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~ 576 (581)
..+.+ . .+..+.|+|++||+.++.|.+++++++.+|+. ..++++.+.+...++.+.++++
T Consensus 626 ----------~~~~~-----~-~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~ 685 (758)
T 1r6b_X 626 ----------TDAME-----E-IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQVQLDQKGVSLEVSQE 685 (758)
T ss_dssp ------------CHH-----H-HHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHTTEEEEECHH
T ss_pred ----------HHHHH-----H-HHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH----HHHHHHHHHHHHCCcEEEeCHH
Confidence 01111 1 11248899999999999999999999999999 4455556666778899999887
Q ss_pred cc
Q 008014 577 FE 578 (581)
Q Consensus 577 ~~ 578 (581)
+.
T Consensus 686 a~ 687 (758)
T 1r6b_X 686 AR 687 (758)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 13
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.83 E-value=2.1e-19 Score=181.67 Aligned_cols=229 Identities=21% Similarity=0.271 Sum_probs=151.4
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
..++++.|.+.++||+.+++.+...+..... .... +. .+..++||+||||||||++|
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~----~~~~--------~~-----------~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARA----GLKD--------PN-----------RPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHH----TCSC--------TT-----------SCSEEEEEESCSSSSHHHHH
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc----CCCC--------CC-----------CCceEEEEECCCCcCHHHHH
Confidence 4568889999999999999999988852211 1000 00 12357999999999999999
Q ss_pred HHHHHHh---CCCeEEecccccccc-----------ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 348 KTLARYV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 348 raLA~~l---~~~fv~i~~s~l~~~-----------gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
+++|+.+ +.+++.++|+.+... +++|......+...+ ....++||||||+|++.+.
T Consensus 65 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~--- 134 (311)
T 4fcw_A 65 KTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDAIEKAHPD--- 134 (311)
T ss_dssp HHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHH-------HHCSSEEEEEETGGGSCHH---
T ss_pred HHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHH-------HhCCCeEEEEeChhhcCHH---
Confidence 9999988 567999999876531 122222112222222 2245689999999999877
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
+|+.|+++|++..+.. .....++..++++|+++|... +.+... ..+ ...
T Consensus 135 -----------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~~-~~i~~~-~~~----~~~---- 183 (311)
T 4fcw_A 135 -----------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLGS-PLILEG-LQK----GWP---- 183 (311)
T ss_dssp -----------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTTH-HHHHTT-TTS----CCC----
T ss_pred -----------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccCH-HHHHhh-hcc----ccc----
Confidence 8999999999665531 112357778999999998632 111110 000 000
Q ss_pred hhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEe
Q 008014 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFY 573 (581)
Q Consensus 494 ~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~ 573 (581)
.+ .+.+.+. +.....+.|++++|++.++.+.+++.+++.+|+. ..++++.+.+...++.+.+
T Consensus 184 --------~~----~l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~ 245 (311)
T 4fcw_A 184 --------YE----RIRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLEL 245 (311)
T ss_dssp --------SS----THHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEEE
T ss_pred --------HH----HHHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEEe
Confidence 00 0111111 0011237899999999999999999999999999 4445555556667888999
Q ss_pred ccccc
Q 008014 574 GKCFE 578 (581)
Q Consensus 574 ~~~~~ 578 (581)
++++.
T Consensus 246 ~~~~~ 250 (311)
T 4fcw_A 246 TEAAK 250 (311)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88764
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=5.3e-20 Score=211.55 Aligned_cols=219 Identities=19% Similarity=0.278 Sum_probs=157.5
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|.|++++|++|.+.|..+. +.++.....+ ++++|||+||||||||++||++|++++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~---------------------~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVK---------------------PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC---------------------CCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC---------------------CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 48999999999999986432 2222222211 348999999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|+. +..++.+|+.+.. ..|+||||||||.+.+.|+..+ +...+++.++||..|+|
T Consensus 264 ~~~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CEEEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHH
T ss_pred CeEEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhc
Confidence 999999999988 5799998 8899999998764 6799999999999999876432 23345689999999995
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
. ....++++|++||..+ ++.++++ +||++.|.++.|+.+. ..++++..
T Consensus 335 ~-------------------~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~-----------R~~IL~~~ 384 (806)
T 3cf2_A 335 L-------------------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG-----------RLEILQIH 384 (806)
T ss_dssp C-------------------CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH-----------HHHHHHHT
T ss_pred c-------------------cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH-----------HHHHHHHH
Confidence 2 1234688899999887 6666654 5999999999998765 33444433
Q ss_pred cchhhhhcCCC-hhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHH
Q 008014 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRK 562 (581)
Q Consensus 514 ~~~dl~~~gl~-PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k 562 (581)
...--....+. .++.. ....++..|+..++.+....-.++..+
T Consensus 385 l~~~~~~~dvdl~~lA~------~T~GfsgaDL~~Lv~eA~~~A~~r~~~ 428 (806)
T 3cf2_A 385 TKNMKLADDVDLEQVAN------ETHGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp CSSSEECTTCCHHHHHH------HCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcccCHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 32100000111 11121 234688889988888766555555443
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=178.41 Aligned_cols=219 Identities=20% Similarity=0.267 Sum_probs=148.1
Q ss_pred cccChHHHHHHHHHHHHhhH--HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|+|++.+|+.|.+.+.... +..+...... ++.++||+||||||||++|+++|+.++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~---------------------~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---------------------PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---------------------CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 38999999999999986332 2222221111 236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++.++++++. ..|+|+. +..+..+|..+.. ..++||||||||.+...+............++++.||..|++
T Consensus 75 ~~~i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 75 ANFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp CEEEEECHHHHH-HHHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred CCEEEEEhHHHH-hhhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 999999999876 4577876 6677788776642 468999999999999886543222222334589999999994
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
. ....++++|+++|.++ ++.++ +.+||+..+.++.|+.+.. ..+...+++..
T Consensus 149 ~-------------------~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r-------~~il~~~l~~~ 202 (301)
T 3cf0_A 149 M-------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR-------VAILKANLRKS 202 (301)
T ss_dssp S-------------------CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH-------HHHHHHHHTTS
T ss_pred c-------------------cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH-------HHHHHHHHccC
Confidence 2 1234688899999876 55544 4468999999999987652 11222222221
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHH
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~ 558 (581)
. + ...+..+.+.+. ...++..++..++.+......+
T Consensus 203 ~---~-~~~~~~~~la~~-----~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 203 P---V-AKDVDLEFLAKM-----TNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp C---B-CSSCCHHHHHHT-----CSSCCHHHHHHHHHHHHHHHHH
T ss_pred C---C-CccchHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHH
Confidence 1 1 112223333322 3467888999888866554433
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=178.01 Aligned_cols=218 Identities=19% Similarity=0.293 Sum_probs=150.2
Q ss_pred cccChHHHHHHHHHHHHhhHHH--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l- 354 (581)
+|+|++++|+.|.+.+..+.+. .+.+. ..+++++||+||||||||++|+++|+.+
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~----------------------~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGK----------------------RTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTT----------------------CCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCC----------------------CCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 4899999999999998643322 11110 1134789999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...+... .....+++++.|+..|+
T Consensus 71 ~~~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld 141 (322)
T 1xwi_A 71 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 141 (322)
T ss_dssp SCEEEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHh
Confidence 8899999999987 4688887 778888887664 2578999999999998775432 12223458899999999
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
+.. ....++++|+++|.++ ++.++.+ ||+..+.++.|+.+. ...+++..
T Consensus 142 ~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~-----------r~~il~~~ 191 (322)
T 1xwi_A 142 GVG------------------VDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHA-----------RAAMFKLH 191 (322)
T ss_dssp CSS------------------SCCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCHHH-----------HHHHHHHH
T ss_pred ccc------------------ccCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCHHH-----------HHHHHHHH
Confidence 521 1235688899998887 6666655 888999999998764 22333222
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.... ...+.++.+..+.. ....++..++..++++....-+++.
T Consensus 192 l~~~--~~~l~~~~l~~la~--~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 192 LGTT--QNSLTEADFRELGR--KTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HTTC--CBCCCHHHHHHHHH--TCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HhcC--CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1100 00122333322211 1346889999999987766555554
No 17
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=1.8e-18 Score=197.81 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=145.9
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
...+...|.+.|+||+.+++.|..++.. ..... ..+. .+.+++||+||||||||++|
T Consensus 482 l~~l~~~l~~~viGq~~a~~~l~~~i~~----~~~~~--------~~~~-----------~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 482 LLNMENILHSRVIGQDEAVVAVAKAVRR----ARAGL--------KDPK-----------RPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp C-CHHHHHHTTSCSCHHHHHHHHHHHHH----HTTTC--------SCTT-----------SCSEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHhCcCcChHHHHHHHHHHHHH----HHccc--------CCCC-----------CCceEEEEECCCCCCHHHHH
Confidence 3457778888999999999999988852 11111 1111 12247999999999999999
Q ss_pred HHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhh
Q 008014 348 KTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (581)
Q Consensus 348 raLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~ 424 (581)
+++|+.+ +.+|+.++|+++.+. +... ...+.+.. ....++||||||||++.+.
T Consensus 539 ~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~-------~~~~~~vl~lDEi~~~~~~-------------- 594 (758)
T 3pxi_A 539 RALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKV-------RRKPYSVVLLDAIEKAHPD-------------- 594 (758)
T ss_dssp HHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHH-------HHCSSSEEEEECGGGSCHH--------------
T ss_pred HHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHH-------HhCCCeEEEEeCccccCHH--------------
Confidence 9999998 689999999998743 2222 12222222 2245789999999999887
Q ss_pred HHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHH
Q 008014 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (581)
Q Consensus 425 vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~ 504 (581)
+++.|+++||++.++.. ....++..++++|+|+|...-. .
T Consensus 595 ~~~~Ll~~le~g~~~~~----------~g~~~~~~~~~iI~ttn~~~~~------------------~------------ 634 (758)
T 3pxi_A 595 VFNILLQVLEDGRLTDS----------KGRTVDFRNTILIMTSNVGASE------------------K------------ 634 (758)
T ss_dssp HHHHHHHHHHHSBCC---------------CCBCTTCEEEEEESSSTTC------------------C------------
T ss_pred HHHHHHHHhccCeEEcC----------CCCEeccCCeEEEEeCCCChhh------------------H------------
Confidence 99999999996554321 1124567889999999854310 0
Q ss_pred HHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccccc
Q 008014 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKCFE 578 (581)
Q Consensus 505 ~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~~~ 578 (581)
..+.+. .+..|.|+|++|++.++.|.+++++++.+|+.. .++++.+.+...++.+.+++++.
T Consensus 635 --~~~~~~------~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~~~~a~ 696 (758)
T 3pxi_A 635 --DKVMGE------LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSL----MSDQLTKRLKEQDLSIELTDAAK 696 (758)
T ss_dssp --HHHHHH------HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHH----HHHHHHHHHHTTTCEEEECHHHH
T ss_pred --HHHHHH------HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHH----HHHHHHHHHHhCCCeEEECHHHH
Confidence 000111 111378999999999999999999999999994 44555555666799999998764
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.78 E-value=1.6e-18 Score=178.69 Aligned_cols=220 Identities=22% Similarity=0.275 Sum_probs=148.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++.+|+.|.+++..+... ...... ...++.++||+||||||||++|+++|+.++.+
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~--~~~~~~------------------~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKF--PHLFKG------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--GGGCCT------------------TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred HhcChHHHHHHHHHHHHHHHhC--HHHHhc------------------CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 3899999999999998633221 111000 01134789999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.++++++. ..|+|+. +..++.+|..+.. ..++||||||||.+...+... .....+++++.|+..|++..
T Consensus 79 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 79 FFSVSSSDLV-SKWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp EEEEEHHHHH-TTTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGG
T ss_pred EEEEchHHHh-hcccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcccc
Confidence 9999999987 4688887 7788888877653 578999999999998875432 22233458999999999421
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcch
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~ 516 (581)
....++++|+++|.++ ++.++.+ ||+..+.++.|+.+. ..++++.....
T Consensus 150 ------------------~~~~~v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~-----------r~~il~~~~~~ 199 (322)
T 3eie_A 150 ------------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA-----------RTTMFEINVGD 199 (322)
T ss_dssp ------------------TSCCCEEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHH-----------HHHHHHHHHTT
T ss_pred ------------------ccCCceEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHH-----------HHHHHHHHhcc
Confidence 1234588898888776 7777765 899999999998765 22333322110
Q ss_pred hhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 517 dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
. ...+.++.+..+.. ....++..++..++.+....-+++.
T Consensus 200 ~--~~~~~~~~l~~la~--~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 200 T--PCVLTKEDYRTLGA--MTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp C--CCCCCHHHHHHHHH--TTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred C--CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00123333332211 1245888899888887655555554
No 19
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=9e-18 Score=194.60 Aligned_cols=226 Identities=21% Similarity=0.291 Sum_probs=149.2
Q ss_pred HHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHH
Q 008014 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 271 i~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraL 350 (581)
+.+.+.+.|+||+.+++.+...+.. ...+. .+++ .+..++||+||||||||++|++|
T Consensus 552 l~~~l~~~viG~~~a~~~l~~~i~~----~~~g~--------~~~~-----------~p~~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 552 LEEELHKRVVGQDEAIRAVADAIRR----ARAGL--------KDPN-----------RPIGSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHH----HGGGC--------SCSS-----------SCSEEEEEBSCSSSSHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHH----Hhccc--------CCCC-----------CCceEEEEECCCCCCHHHHHHHH
Confidence 5566777899999999999988851 11110 1111 12258999999999999999999
Q ss_pred HHHh---CCCeEEeccccccc-----------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhccc
Q 008014 351 ARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (581)
Q Consensus 351 A~~l---~~~fv~i~~s~l~~-----------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~ 416 (581)
++.+ +.+|+.++|+++.. .+|+|....+.+.+.+ ....++|||||||+++.+.
T Consensus 609 a~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~-------~~~~~~vl~lDEi~~l~~~------ 675 (854)
T 1qvr_A 609 AATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDEIEKAHPD------ 675 (854)
T ss_dssp HHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHH-------HHCSSEEEEESSGGGSCHH------
T ss_pred HHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHH-------HhCCCeEEEEecccccCHH------
Confidence 9998 78999999998653 2344544212333222 2245689999999999887
Q ss_pred CCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhh
Q 008014 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (581)
Q Consensus 417 ~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~ 496 (581)
+++.|+++||.+.++ ......++..++++|+|+|... +.+.... +++.
T Consensus 676 --------~~~~Ll~~l~~~~~~----------~~~g~~vd~~~~iiI~tsn~~~-~~~~~~~------~~~~------- 723 (854)
T 1qvr_A 676 --------VFNILLQILDDGRLT----------DSHGRTVDFRNTVIILTSNLGS-PLILEGL------QKGW------- 723 (854)
T ss_dssp --------HHHHHHHHHTTTEEC----------CSSSCCEECTTEEEEEECCTTH-HHHHHHH------HTTC-------
T ss_pred --------HHHHHHHHhccCceE----------CCCCCEeccCCeEEEEecCcCh-HHHhhhc------cccc-------
Confidence 999999999966553 1123467889999999998532 1111100 0000
Q ss_pred cCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCeEEeccc
Q 008014 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQAAFYGKC 576 (581)
Q Consensus 497 ~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~l~~~~~ 576 (581)
..+...+.+.+. .+..|.|+|++|++.++.+.+++.+++.+|+.. .++++.+.+...++.+.++++
T Consensus 724 ----~~~~l~~~v~~~------~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~----~l~~~~~~~~~~~~~~~~~~~ 789 (854)
T 1qvr_A 724 ----PYERIRDEVFKV------LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI----QLSYLRARLAEKRISLELTEA 789 (854)
T ss_dssp ----CHHHHHHHHHHH------HHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHH----HHHHHHHHHHTTTCEEEECHH
T ss_pred ----chHHHHHHHHHH------HHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHH----HHHHHHHHHHhCCceEEECHH
Confidence 011111112111 233589999999999999999999999999994 445555555667889999987
Q ss_pred cc
Q 008014 577 FE 578 (581)
Q Consensus 577 ~~ 578 (581)
+.
T Consensus 790 a~ 791 (854)
T 1qvr_A 790 AK 791 (854)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 20
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.75 E-value=1.8e-17 Score=167.60 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=129.8
Q ss_pred CCChHHHHHhhhccccChHHHHHHHHHHHHhhH-HHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCCh
Q 008014 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (581)
Q Consensus 265 ~~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGK 343 (581)
....+++.+.|++.|+|++.+|+.|.+.+.... ...+...... ...+..++||+|||||||
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~------------------~~~~~~~vll~G~~GtGK 80 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLA------------------HETPTLHMSFTGNPGTGK 80 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCC------------------SSCCCCEEEEEECTTSSH
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCC------------------CCCCCceEEEECCCCCCH
Confidence 345678899999889999999999998885322 1111111111 011236899999999999
Q ss_pred HHHHHHHHHHh-------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhccc
Q 008014 344 TLLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (581)
Q Consensus 344 TtLAraLA~~l-------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~ 416 (581)
|++|+++|+.+ ..+++.++++++. ..|+|.. ...+...+.. +.++||||||+|.+...+..
T Consensus 81 T~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~--- 148 (309)
T 3syl_A 81 TTVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE--- 148 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-----
T ss_pred HHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc---
Confidence 99999999888 3489999999887 4578876 4555555544 35789999999999754321
Q ss_pred CCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhh
Q 008014 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (581)
Q Consensus 417 ~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~ 496 (581)
+.....+++.|++.|++. ..++++|++++...++...
T Consensus 149 --~~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~-------------------- 185 (309)
T 3syl_A 149 --RDYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF-------------------- 185 (309)
T ss_dssp ---CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH--------------------
T ss_pred --ccccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH--------------------
Confidence 122344899999999931 2356777887743211111
Q ss_pred cCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhh
Q 008014 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (581)
Q Consensus 497 ~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e 551 (581)
.+.|.+.+|++..+.|.+++.+++.+|+..
T Consensus 186 -------------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 215 (309)
T 3syl_A 186 -------------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGH 215 (309)
T ss_dssp -------------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHH
T ss_pred -------------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHH
Confidence 023777788888888888888888877763
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.73 E-value=2.1e-17 Score=173.29 Aligned_cols=217 Identities=22% Similarity=0.312 Sum_probs=143.5
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|+|++.+|+.|.+++..+.. ..+... ..++.++||+||||||||++|+++|+.++
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~----------------------~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGN----------------------RKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSS----------------------CCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcC----------------------CCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 489999999999998863322 111110 01347899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...+... .....+++++.||..|++
T Consensus 110 ~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 110 STFFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNG 180 (355)
T ss_dssp CEEEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHH
T ss_pred CCEEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhc
Confidence 999999999987 4688876 677788877654 2578999999999998875432 122334588999999994
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhc
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~ 514 (581)
.. ....++++|+++|.++ ++.++.+ ||+..+.++.|+.+. ...+++...
T Consensus 181 ~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~-----------r~~il~~~l 230 (355)
T 2qp9_X 181 VG------------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA-----------RTTMFEINV 230 (355)
T ss_dssp CC---------------------CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHH-----------HHHHHHHHH
T ss_pred cc------------------ccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHH-----------HHHHHHHHH
Confidence 21 1234588899998876 6666655 888899999998764 233333322
Q ss_pred chhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008014 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (581)
Q Consensus 515 ~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q 559 (581)
... ...+.++.+..+.. ....++..++..++.+....-+++
T Consensus 231 ~~~--~~~~~~~~l~~la~--~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 231 GDT--PSVLTKEDYRTLGA--MTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp TTS--CBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhC--CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 110 01134444444322 224578888888888765555444
No 22
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=168.53 Aligned_cols=221 Identities=21% Similarity=0.291 Sum_probs=144.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|.|.+++|+.|.+.+..++... ++++++++.+++ +++|+||||||||+|+++||..++.+
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~------------------~~l~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNP------------------DQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSH------------------HHHHHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHHhhCH------------------HHHHHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHcCCC
Confidence 38999999999999886444321 123334455554 49999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.+++.++. ..|+|+. ++.+..+|+.+.. ..++++|+||+|.+...+.... .....++.+.++..|+|+.
T Consensus 72 ~i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 72 FISVKGPELL-NMYVGES-ERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp EEEEETTTTC-SSTTHHH-HHHHHHHHHHHHH----TCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCC
T ss_pred EEEEEcHHHH-hhhhhHH-HHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhccc
Confidence 9999999887 3577765 6677778776532 4688999999999876543211 1112347899999999631
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcc
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~ 515 (581)
....+++++++|.++ +|+++. .+||+..|.++.|+.+. ..++++.+..
T Consensus 143 -------------------~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~-----------r~~il~~~~~ 192 (274)
T 2x8a_A 143 -------------------ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD-----------RLAILKTITK 192 (274)
T ss_dssp -------------------STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH-----------HHHHHHHHTT
T ss_pred -------------------ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH-----------HHHHHHHHHh
Confidence 112356777888777 666665 36999999999998765 3344443331
Q ss_pred hh---hhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008014 516 SD---LIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (581)
Q Consensus 516 ~d---l~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q 559 (581)
.. -....+.-+.+.+. ..-..++-.|+..++++....-+++
T Consensus 193 ~~~~~~~~~~~~~~~la~~---~~~~g~sgadl~~l~~~a~~~a~~~ 236 (274)
T 2x8a_A 193 NGTKPPLDADVNLEAIAGD---LRCDCYTGADLSALVREASICALRQ 236 (274)
T ss_dssp TTBTTBBCTTCCHHHHHTC---SGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCccccCHHHHHHh---hccCCcCHHHHHHHHHHHHHHHHHH
Confidence 10 00001111112110 0123799999999998776544443
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=6.8e-17 Score=176.41 Aligned_cols=172 Identities=24% Similarity=0.307 Sum_probs=123.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++++|++|.+.+.. ++.. ..++.+...++ .++||+||||||||++|+++|..++.+
T Consensus 17 di~G~~~~~~~l~e~v~~-l~~~------------------~~~~~~g~~~p-~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEF-LKDP------------------SKFNRIGARMP-KGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCT------------------HHHHTTTCCCC-SEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHH-hhCh------------------HHHhhcCCCCC-CeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999998852 2110 00111122222 579999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.++++++.. .|+|.. ...++.+|..+.. ..|+||||||||.+...+.....+.+...+++++.||..|++.
T Consensus 77 f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~- 149 (476)
T 2ce7_A 77 FFHISGSDFVE-LFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF- 149 (476)
T ss_dssp EEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-
T ss_pred eeeCCHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-
Confidence 99999999884 588876 6677788877642 5789999999999998776543445555566899999999842
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~ 494 (581)
-...++++|+++|.++ ++.++ +.+||+..+.++.|+.+.
T Consensus 150 ------------------~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 150 ------------------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp ------------------CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred ------------------CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 0134688899999876 55444 447999999999998654
No 24
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.71 E-value=1.4e-17 Score=184.38 Aligned_cols=208 Identities=20% Similarity=0.222 Sum_probs=133.2
Q ss_pred CChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHH
Q 008014 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (581)
Q Consensus 266 ~~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTt 345 (581)
..+.++.+.|+++++|++.+++.+.+.+.. .. ++..++..+++|+||||||||+
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l--~~------------------------~~~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAV--QK------------------------LTKSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHH--HH------------------------HSSSCCSCEEEEESSSSSSHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHH--HH------------------------hcccCCCCEEEEECCCCCCHHH
Confidence 345566778888999999999998776641 11 1112234688999999999999
Q ss_pred HHHHHHHHhCCCeEEeccccccc--------cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccC
Q 008014 346 LAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (581)
Q Consensus 346 LAraLA~~l~~~fv~i~~s~l~~--------~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~ 417 (581)
+|+++|+.++.++..+++..+.. ..|+|.. .+.+...|..+. ...+|+||||||++..++..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~---- 193 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG---- 193 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC---------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc----
Confidence 99999999999999999877542 1344543 233334444332 24569999999999876321
Q ss_pred CCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhc
Q 008014 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (581)
Q Consensus 418 ~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~ 497 (581)
..++.||++||+.. .....++.....++..++++|+|+|..+
T Consensus 194 ------~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------------------- 235 (543)
T 3m6a_A 194 ------DPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLA-------------------------- 235 (543)
T ss_dssp ----------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTT--------------------------
T ss_pred ------CHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccc--------------------------
Confidence 16789999998432 1223334444566778899999998532
Q ss_pred CCCchHHHHHHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCC---eEEec
Q 008014 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQ---AAFYG 574 (581)
Q Consensus 498 ~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi---~l~~~ 574 (581)
.+.|++++|+. ++.+..++.++..+|+...+ .+++.+ ..|+ .+.++
T Consensus 236 ------------------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~~~~---~~~~~~~~i~i~ 284 (543)
T 3m6a_A 236 ------------------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPKQIK---EHGLKKSNLQLR 284 (543)
T ss_dssp ------------------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHHHHH---HTTCCGGGCEEC
T ss_pred ------------------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHHHHH---HcCCCcccccCC
Confidence 26688999994 68999999999999888433 333333 3444 56666
Q ss_pred cccc
Q 008014 575 KCFE 578 (581)
Q Consensus 575 ~~~~ 578 (581)
+++.
T Consensus 285 ~~~l 288 (543)
T 3m6a_A 285 DQAI 288 (543)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=1.2e-16 Score=160.02 Aligned_cols=171 Identities=26% Similarity=0.387 Sum_probs=116.5
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.|+|++++++.|.+.+..... ..+...... .+.++||+||||||||++|+++|+.++
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIE---------------------PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC---------------------CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---------------------CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 389999999999988853221 122111111 236899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++.+++.++. ..+.|.. ...+...+..+. ...++||||||+|.+...+.+...+.+ ...+..|+.+++.
T Consensus 77 ~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 77 ATFIRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGD---REVQRTLMQLLAE 147 (285)
T ss_dssp CEEEEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGG---GHHHHHHHHHHHH
T ss_pred CCEEEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCcc---HHHHHHHHHHHHH
Confidence 999999999887 4577775 566667766554 256789999999999876543222222 2245555555541
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
.. + .....++++|+++|..+ ++..+. .+||+..+.++.|+.+.
T Consensus 148 ~~------~----------~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 148 MD------G----------FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HH------T----------TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred hh------C----------CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 00 0 00123578888888776 554443 44888889999887764
No 26
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=3e-16 Score=155.54 Aligned_cols=172 Identities=23% Similarity=0.330 Sum_probs=119.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++.+|+.+.+.+.. ... .. .+....... +.+++|+||||||||++|+++|+.++.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~-~~~---~~---------------~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEY-LRE---PS---------------RFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp GSCSCHHHHHHTHHHHHH-HHC---GG---------------GC-----CC-CCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred HhcCcHHHHHHHHHHHHH-HhC---HH---------------HHHHcCCCC-CCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 489999999999987742 110 00 011111112 3579999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.++++++.. .+.|+. ...+..+|+.+.. ..++++||||+|.+...+.....+.....+.+++.++..|++.
T Consensus 73 ~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~- 145 (257)
T 1lv7_A 73 FFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF- 145 (257)
T ss_dssp EEEECSCSSTT-SCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-
T ss_pred EEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-
Confidence 99999999874 477776 5667777776542 4578999999999988654322222333345788899999842
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
....++++|+++|.++ +++.+. .+||+..+.++.|+.+.
T Consensus 146 ------------------~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 146 ------------------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp ------------------CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred ------------------ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 1234577888888776 555443 45888888998887654
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=168.36 Aligned_cols=170 Identities=25% Similarity=0.376 Sum_probs=113.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++.+++.|.+.+...... ..... .+..+..++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~--~~~~~------------------~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLR--PELFT------------------GLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--TTTSC------------------GGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccC--HHHhc------------------ccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4899999999999988532211 11000 011234799999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.++++++. ..|+|+. ...+..+|..+.. ..++||||||||.+...+.. +......++++.|+..|++..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999987 4688876 6667777766542 46789999999999776432 122233458999999999531
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
. ....++++|+++|..+ ++..+.+ ||+..+.|+.|+.+.
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQELDEAVLR-RFIKRVYVSLPNEET 286 (389)
T ss_dssp ----------------------CEEEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHH
T ss_pred c-----------------cCCCCEEEEEecCCchhcCHHHHc-CcceEEEcCCcCHHH
Confidence 1 1124588888888766 6656654 677778888887664
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=165.22 Aligned_cols=216 Identities=22% Similarity=0.322 Sum_probs=141.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++.+|+.|.+.+...... ..... .....+.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~--~~~~~------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLR--PDIFT------------------GLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--TTTSC------------------GGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhC--hHhHh------------------hccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 5899999999999988632211 00000 011234789999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.++++++. ..|+|+. ...++.++..+. ...++||||||||.+...+.. +.+....++++.||..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 4578775 666777776554 256899999999999876532 223334458899999999531
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcch
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~ 516 (581)
. ....++++|+++|..+ +++++.+ |++..+.++.|+.+. ...++..+...
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~-----------r~~il~~~~~~ 266 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASA-----------RKQIVINLMSK 266 (357)
T ss_dssp -------------------CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHH-----------HHHHHHHHHHT
T ss_pred c-----------------cCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHH-----------HHHHHHHHHhh
Confidence 1 1134678888888765 6666655 788888888887654 22233222110
Q ss_pred hhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHH
Q 008014 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (581)
Q Consensus 517 dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~ 555 (581)
. ...+.++.+..+.. ....++..++..++.+....
T Consensus 267 ~--~~~l~~~~l~~la~--~t~G~s~~dl~~l~~~a~~~ 301 (357)
T 3d8b_A 267 E--QCCLSEEEIEQIVQ--QSDAFSGADMTQLCREASLG 301 (357)
T ss_dssp S--CBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHHTH
T ss_pred c--CCCccHHHHHHHHH--HcCCCCHHHHHHHHHHHHHH
Confidence 0 11255655554422 23457778888777755443
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=155.08 Aligned_cols=171 Identities=24% Similarity=0.300 Sum_probs=106.1
Q ss_pred cccChHHHHHHHHHHHHhh-HHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~-~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+|++.+|+.|.+.+... ++..+.... . ..+.++||+||||||||++|+++|+.++.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g--------------------~-~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLG--------------------A-KVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC--------------------------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcC--------------------C-CCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999998887420 001110000 0 12368999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccC-CCCchhhHHHHHHHHHhC
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~-~d~~~~~vq~aLL~lLEg 435 (581)
+++.++++++.. .|.|.. ...+..+|..+.. ..++||||||+|.+...+.....+ .+.........|+..+++
T Consensus 66 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 66 PFLAMAGAEFVE-VIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp CEEEEETTTTSS-SSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred CEEEechHHHHh-hccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 999999999873 466665 5666677665542 458999999999998765432111 111122356677777773
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
. -...++++|+++|..+ ++..+. .+||+..+.++.|+.++
T Consensus 140 ~-------------------~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 140 M-------------------GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp C-------------------CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred c-------------------CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 1 0134678888888766 444443 34788888888887654
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.69 E-value=7.8e-17 Score=173.96 Aligned_cols=218 Identities=20% Similarity=0.299 Sum_probs=142.5
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh-
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l- 354 (581)
+|+|++.+|+.|.+.+..+.. ..+... ..++.++||+||||||||++|+++|+.+
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~----------------------~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGK----------------------RTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGG----------------------GCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhcc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999998853222 111110 1134789999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+|+.++++++. ..|+|+. +..++.+|..+. ...++||||||||.+...+... .....+++++.||..|+
T Consensus 193 ~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 193 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp SSEEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTT
T ss_pred CCCEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHh
Confidence 8899999999987 4688876 667777777654 2578999999999998765432 12223458899999998
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v 513 (581)
+.. ....++++|+++|.++ ++.++.+ ||+..+.++.|+.+. ...+++..
T Consensus 264 ~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~-----------r~~il~~~ 313 (444)
T 2zan_A 264 GVG------------------VDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHA-----------RAAMFRLH 313 (444)
T ss_dssp CSS------------------CCCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHHH-----------HHHHHHHH
T ss_pred Ccc------------------cCCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHHH-----------HHHHHHHH
Confidence 521 1234678888888877 6666654 888899999998764 23333332
Q ss_pred cchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008014 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (581)
Q Consensus 514 ~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~ 560 (581)
.... ...+.++.+..+.. ....++..++..++.+....-+++.
T Consensus 314 l~~~--~~~l~~~~l~~la~--~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 314 LGST--QNSLTEADFQELGR--KTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp HTTS--CEECCHHHHHHHHH--HTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HhcC--CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2100 00134444444322 2356888899998887666555554
No 31
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.69 E-value=1.7e-16 Score=174.27 Aligned_cols=172 Identities=26% Similarity=0.358 Sum_probs=124.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++++|+.+.+.+.. +.. +..++++.+.+++ +++|+||||||||+||++||..++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~~------------------~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LKN------------------PSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC------------------GGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hhc------------------hhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988742 211 1124445555554 59999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.++++++.. .++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.+...+.+.+.|+..|+|..
T Consensus 92 ~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 99999999874 477765 5667788877642 35799999999999876542211222233457788888888531
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~ 494 (581)
....+++++++|.++ +++++ +++||+..|.++.|+.+.
T Consensus 166 -------------------~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 166 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp -------------------SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred -------------------cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 123467788888777 55444 456899999999998764
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=5.3e-17 Score=165.78 Aligned_cols=147 Identities=13% Similarity=0.178 Sum_probs=95.0
Q ss_pred CccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~ 409 (581)
+.++||+||||||||++|+++|+.++.+++.++++++. ..|+|+. ...++..|..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 36899999999999999999999999999999999987 5688887 677888887764333346799999999999988
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCC
Q 008014 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGF 487 (581)
Q Consensus 410 ~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF 487 (581)
.+.... ........+++.|+++||+.....- .+........++++|+|+|..+ ++.++. .+|++..+.+
T Consensus 114 ~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~--------~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 114 RMGGTT-QYTVNNQMVNATLMNIADNPTNVQL--------PGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC
T ss_pred CCCCCc-cccchHHHHHHHHHHHhcccccccc--------ccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC
Confidence 543221 1222334589999999995432110 0000123456788999999877 655554 4789888764
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=3.2e-16 Score=158.04 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=137.8
Q ss_pred cccChHHHHHHHHHHHHhhHH--HHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+|+|++.+++.|.+.+..... ..+.+. ..++.++||+||||||||++|+++|+.++
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~----------------------~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGL----------------------RAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGG----------------------GCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcC----------------------CCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 489999999999998853221 111111 11347899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+++.++++++. ..|+|.. ...++.++..+. ...++||||||+|.+...+... .......+++.|+..+++
T Consensus 80 ~~~~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 80 ATFLNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp CEEEEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHH
T ss_pred CCeEEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhc
Confidence 999999999887 4577775 566667766543 3578999999999998765432 122234488899999994
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhc
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~ 514 (581)
.... ....++++|+++|.++ ++..+.+ ||+..+.++.|+.+. ...+++.+.
T Consensus 151 ~~~~----------------~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~-----------r~~il~~~~ 202 (297)
T 3b9p_A 151 LPGN----------------PDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQT-----------RELLLNRLL 202 (297)
T ss_dssp CC----------------------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHH-----------HHHHHHHHH
T ss_pred cccc----------------CCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHH-----------HHHHHHHHH
Confidence 2110 1124578888888765 6666665 788889999887654 223332221
Q ss_pred chhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhh
Q 008014 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (581)
Q Consensus 515 ~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~ 552 (581)
... ...+.++.+..+... -..++..++..++++.
T Consensus 203 ~~~--~~~~~~~~~~~la~~--~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 203 QKQ--GSPLDTEALRRLAKI--TDGYSGSDLTALAKDA 236 (297)
T ss_dssp GGG--SCCSCHHHHHHHHHH--TTTCCHHHHHHHHHHH
T ss_pred Hhc--CCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 110 112455555544321 2456777776666643
No 34
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.68 E-value=2.2e-16 Score=172.87 Aligned_cols=168 Identities=23% Similarity=0.362 Sum_probs=127.1
Q ss_pred cccChHHHHHHHHHHHHhh--HHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.|+|++.+++.|.+.+... ++..+.....+ ++.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~---------------------~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVK---------------------PPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---------------------CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 4899999999999998632 22222222111 237899999999999999999999999
Q ss_pred CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 356 ~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
.+|+.++|+++. ..|.|+. ...++..|..+.. ..++||||||||.+...+... ......++++.||.+|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999987 4688876 6777888877653 567899999999999875432 122334589999999994
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~ 494 (581)
. ....++++|+++|.++ +++.+.+ ++|+..+.|+.|+.+.
T Consensus 335 ~-------------------~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 335 L-------------------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp S-------------------CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred c-------------------ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 2 1234688899999776 5555554 6899999999998764
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.63 E-value=2.2e-17 Score=190.58 Aligned_cols=172 Identities=24% Similarity=0.306 Sum_probs=124.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCccc-ccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~-v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+++|++.+|+.|.+.+.....+ . ... ..+. .++.++||+||||||||++|+++|+.++.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~--~----------------~~~--~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEH--P----------------DKF--LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSS--C----------------TTT--TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHhhhhc--h----------------HHH--HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999998877421110 0 000 0111 13468999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
+++.++++++. ..|+|+. +..++.+|+.++. ..++||||||||++...+.......+....+++++||..|++.
T Consensus 538 ~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 538 NFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp CCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 99999999988 5699987 7788888887653 5689999999999988764322111223345889999999852
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhh
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~ 494 (581)
....++++|+|||.++ ++.++.+ +||+..|.|+.|+.+.
T Consensus 612 -------------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 612 -------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp -----------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred -------------------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHH
Confidence 1235678889999876 5665553 6999999999998765
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=5.9e-15 Score=151.43 Aligned_cols=136 Identities=24% Similarity=0.338 Sum_probs=92.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++.+++.+...+..... .. .+..++||+||||||||++|+++|+.++.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~----~~-----------------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKK----RN-----------------------ECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH----TT-----------------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHHHHh----cC-----------------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 379999999999888852110 00 023689999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
|+.+++..+.. ...+...+.. .+.+++||||||+.+... +|+.|+..|++..
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 83 IKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYR 134 (338)
T ss_dssp EEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSC
T ss_pred eEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhcc
Confidence 99999976542 2233333332 246799999999999876 8999999999665
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
+.+..... .....+.++..++++|+++|..+
T Consensus 135 ~~~~~~~~---~~~~~~~~~~~~~~~i~atn~~~ 165 (338)
T 3pfi_A 135 LDIIIGSG---PAAQTIKIDLPKFTLIGATTRAG 165 (338)
T ss_dssp C------------CCCCCCCCCCCEEEEEESCGG
T ss_pred chhhcccC---ccccceecCCCCeEEEEeCCCcc
Confidence 43211110 00112233344678888888543
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.62 E-value=1.7e-16 Score=157.82 Aligned_cols=172 Identities=25% Similarity=0.373 Sum_probs=112.6
Q ss_pred cccChHHHHHHHHHHHHh-hHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 278 FVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~-~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
+|+|++.+++.|.+++.. .++..+.....+ .+.++||+||||||||++|+++|+.++.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAK---------------------IPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCC---------------------CCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCC---------------------CCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 389999999999988742 111111111111 1257999999999999999999999999
Q ss_pred CeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhccc-CCCCchhhHHHHHHHHHhC
Q 008014 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 357 ~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~-~~d~~~~~vq~aLL~lLEg 435 (581)
+++.++++++.. .+.|.. ...++.+|..+. ...++||||||+|.+...+...+. +.+.....+++.|+..|++
T Consensus 71 ~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFIE-MFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTTT-SCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHHH-hhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 999999998763 466654 333444444432 246799999999999887533221 1122223367778888873
Q ss_pred ceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHH-HhhhcccCCCCCChhhhh
Q 008014 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l-~~rrfd~~IgF~~P~~e~ 494 (581)
.. -...++++|+++|..+ ++..+ +++||+..+.|+.|+.+.
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred cc------------------cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 10 1234577888888776 44433 345899999999998765
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.60 E-value=3.5e-15 Score=148.42 Aligned_cols=139 Identities=19% Similarity=0.313 Sum_probs=85.7
Q ss_pred hhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 275 Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+++ ++|++.+++.+.+.+.... ..+.++||+||||||||++|+++++.+
T Consensus 5 f~~-~ig~~~~~~~~~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 5 KDN-LLGEANSFLEVLEQVSHLA------------------------------PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT------------------------------TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccc-ceeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 444 6899999998887774100 012689999999999999999999987
Q ss_pred C---CCeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 355 N---VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 355 ~---~~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
. .+|+.++|+++... .+.|.. ...+..........+..+.+++||||||+.+... +|+
T Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~ 118 (265)
T 2bjv_A 54 SRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQE 118 (265)
T ss_dssp TTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHH
T ss_pred CccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHH
Confidence 4 68999999876421 111111 0001111011112233456789999999999877 899
Q ss_pred HHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCC
Q 008014 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (581)
Q Consensus 428 aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~ 469 (581)
.|+++|+...+. ..+ .. .....++.+|+++|.
T Consensus 119 ~Ll~~l~~~~~~--~~g-------~~-~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 119 KLLRVIEYGELE--RVG-------GS-QPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHHHHCEEC--CCC-------C---CEECCCEEEEEESS
T ss_pred HHHHHHHhCCee--cCC-------Cc-ccccCCeEEEEecCc
Confidence 999999954432 111 11 112345778888874
No 39
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.59 E-value=6.1e-15 Score=148.29 Aligned_cols=175 Identities=26% Similarity=0.346 Sum_probs=114.1
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++ +|+|++++++.+..++.. |... .+++++++.+++ +++|+||||||||+|+++++..
T Consensus 38 ~~~-~i~g~~~~~~~l~~l~~~-~~~~------------------~~l~~~~~~~~~-gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 38 TFK-DVAGAEEAKEELKEIVEF-LKNP------------------SRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CGG-GSSSCHHHHHHHHHHHHH-HHCH------------------HHHHHTTCCCCC-EEEEECCTTSSHHHHHHHHHHH
T ss_pred CHH-HhCChHHHHHHHHHHHHH-HHCH------------------HHHHHcCCCCCC-eEEEECCCcChHHHHHHHHHHH
Confidence 344 489999999999887742 2110 122334555554 4999999999999999999999
Q ss_pred hCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHH
Q 008014 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (581)
Q Consensus 354 l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lL 433 (581)
++.+++.+++.++.. .+.+.. ...+..+|+.+.. ..++++++||+|.+...+.....+.........+.++..|
T Consensus 97 ~~~~~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 170 (278)
T 1iy2_A 97 ARVPFITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170 (278)
T ss_dssp TTCCEEEEEHHHHHH-STTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHH
T ss_pred cCCCEEEecHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 999999999887653 344443 4455566665431 3578999999999876543211111112233566777777
Q ss_pred hCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 434 Eg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
+|+. ....++++++++.++ +++.+. ++||+..+.++.|+.+.
T Consensus 171 sgg~-------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 171 DGFE-------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp TTCC-------------------TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred hCCC-------------------CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 7421 012356667777666 666554 45899999999998764
No 40
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.57 E-value=1.5e-14 Score=142.96 Aligned_cols=172 Identities=26% Similarity=0.349 Sum_probs=113.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|+++++..+..++.. |... .+++++++.+++ +++|+||||||||++++++++.++.+
T Consensus 17 ~i~g~~~~~~~l~~l~~~-~~~~------------------~~~~~~~~~~~~-g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEF-LKNP------------------SRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCH------------------HHHHHTTCCCCS-EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCcHHHHHHHHHHHHH-HHCH------------------HHHHHcCCCCCC-eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999887742 2210 112334444554 49999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.+++.++.. .+.+.. ...+..+|+.+.. ..++++++||+|.+...+.....+........++.|+..|+|+.
T Consensus 77 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 77 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp EEEEEHHHHHH-SCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred EEEeeHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 99999887653 345544 4556666665431 35789999999999876432111122222346788888888531
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHH-hhhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~-~rrfd~~IgF~~P~~e~ 494 (581)
....++++++++.++ +++.+. ++||+..+.++.|+.+.
T Consensus 151 -------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 151 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp -------------------TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred -------------------CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 012356677777666 555544 34899999999998764
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=6.6e-15 Score=151.09 Aligned_cols=178 Identities=24% Similarity=0.283 Sum_probs=116.7
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
.+.+...+.+.|+||+++++.+...+. ...++||+||||||||++|
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~----------------------------------~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGIC----------------------------------TGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHH----------------------------------HTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHH----------------------------------cCCeEEEECCCCCcHHHHH
Confidence 345777778889999999998877763 1268999999999999999
Q ss_pred HHHHHHhCCCeEEecccc-ccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 348 KTLARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 348 raLA~~l~~~fv~i~~s~-l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
+++|+.++.+++.++++. ....++.|..........+..... ....+||||||+|++.+. ++
T Consensus 64 ~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g---~l~~~vl~iDEi~~~~~~--------------~~ 126 (331)
T 2r44_A 64 NTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKG---PVFSNFILADEVNRSPAK--------------VQ 126 (331)
T ss_dssp HHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEEC---TTCSSEEEEETGGGSCHH--------------HH
T ss_pred HHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccC---cccccEEEEEccccCCHH--------------HH
Confidence 999999999999998853 221222222110000000000000 012479999999999877 89
Q ss_pred HHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHH
Q 008014 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (581)
Q Consensus 427 ~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~ 506 (581)
+.|++.|+++.+.+ .+... -...++++|+|+|..+.
T Consensus 127 ~~Ll~~l~~~~~~~--~g~~~--------~~~~~~~viat~np~~~---------------------------------- 162 (331)
T 2r44_A 127 SALLECMQEKQVTI--GDTTY--------PLDNPFLVLATQNPVEQ---------------------------------- 162 (331)
T ss_dssp HHHHHHHHHSEEEE--TTEEE--------ECCSSCEEEEEECTTCC----------------------------------
T ss_pred HHHHHHHhcCceee--CCEEE--------ECCCCEEEEEecCCCcc----------------------------------
Confidence 99999999777665 12111 12335667777763220
Q ss_pred HHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhh
Q 008014 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (581)
Q Consensus 507 ~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e 551 (581)
...+.+.+.+++||...+.+..++.++..+|+..
T Consensus 163 -----------~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~ 196 (331)
T 2r44_A 163 -----------EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRR 196 (331)
T ss_dssp -----------SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHH
T ss_pred -----------cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHh
Confidence 0001256777888877778888888887777764
No 42
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=5e-15 Score=152.19 Aligned_cols=148 Identities=21% Similarity=0.355 Sum_probs=95.2
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh--
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-- 354 (581)
+.++|++.+++.+...+.. . ...+.+|||+||||||||++|++++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~----~--------------------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAM----V--------------------------APSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHH----H--------------------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHHH----H--------------------------hCCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 3589999999998888741 0 0123689999999999999999999976
Q ss_pred -CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 355 -NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 355 -~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
+.+|+.++|+.+.. ..+.|.. ...+..........+..+.+++||||||+.+... +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~-~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCC-SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCcc-ccccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 67899999987642 1111111 0000000011112344466799999999999887 89999
Q ss_pred HHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhh
Q 008014 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (581)
Q Consensus 430 L~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rr 480 (581)
+.+|+...+.- .|.. . ....++.+|+++|. ++++.+..++
T Consensus 117 l~~l~~~~~~~--~g~~-------~-~~~~~~riI~atn~-~l~~~v~~g~ 156 (304)
T 1ojl_A 117 LRAIQEREVQR--VGSN-------Q-TISVDVRLIAATHR-DLAEEVSAGR 156 (304)
T ss_dssp HHHHHSSBCCB--TTBC-------C-CCBCCCEEEEEESS-CHHHHHHHTS
T ss_pred HHHHhcCEeee--cCCc-------c-cccCCeEEEEecCc-cHHHHHHhCC
Confidence 99999654321 1111 1 11345788888885 3666555443
No 43
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.55 E-value=4e-15 Score=160.75 Aligned_cols=107 Identities=26% Similarity=0.327 Sum_probs=81.6
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC-
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN- 355 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~- 355 (581)
+.|+||+++++.+...+.. +..+. .+++++||+||||||||++|+++|+.++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~----~~~~~-----------------------~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVEL----IKSKK-----------------------MAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp TTEESCHHHHHHHHHHHHH----HHTTC-----------------------CTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhccCHHHHHHHHHHHHHH----HHhCC-----------------------CCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 3589999999999877741 11110 1237899999999999999999999998
Q ss_pred -CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhc
Q 008014 356 -VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (581)
Q Consensus 356 -~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~ 414 (581)
.+|+.++++++. ..|+|+. +. +.+.|..+.. .....++||||||||++...|...
T Consensus 90 ~~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 90 KVPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp TSCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC----
T ss_pred CceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCC
Confidence 899999999988 5688886 44 7888877621 123578999999999999887644
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.54 E-value=1.3e-13 Score=140.07 Aligned_cols=137 Identities=25% Similarity=0.385 Sum_probs=93.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++.+++.+...+...... . ....++||+||||||||++|+++++.++.+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~-----~----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKAR-----K----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH-----C----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred HhhCHHHHHHHHHHHHHHHHcc-----C----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3799999999998887421100 0 012689999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.++++.+.. ...+...+... .+.+++||||||+.+... .|+.|+..|+...
T Consensus 66 ~~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~ 118 (324)
T 1hqc_A 66 LRVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFV 118 (324)
T ss_dssp EEEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSE
T ss_pred EEEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhh
Confidence 99999877642 12233333321 146789999999999876 7899999999665
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~ 471 (581)
+.+..... .....+.....++++|+++|..+
T Consensus 119 ~~~v~~~~---~~~~~~~~~~~~~~~i~~t~~~~ 149 (324)
T 1hqc_A 119 MDIVIGQG---PAARTIRLELPRFTLIGATTRPG 149 (324)
T ss_dssp EEECCSSS---SSCCCEEEECCCCEEEEEESCCS
T ss_pred hHHhcccc---ccccccccCCCCEEEEEeCCCcc
Confidence 54321111 11112233445678888887543
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.54 E-value=8.1e-15 Score=134.06 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=87.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++.+++.+.+.+.. . .....+|||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~----~--------------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQ----L--------------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHHH----H--------------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHHH----H--------------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 479999999999888741 0 0123689999999999999999999887
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+|+ ++|+.+... ......+. .+.+++|||||||.+... +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~--------~~~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA--------PQLNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS--------SCHHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc--------hhhhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 77999 999876532 11122222 346789999999999887 8999999996
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhc
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrf 481 (581)
.. ..++.+|+++|. ++++.+..++|
T Consensus 102 ~~---------------------~~~~~~I~~t~~-~~~~~~~~~~~ 126 (145)
T 3n70_A 102 QE---------------------HRPFRLIGIGDT-SLVELAASNHI 126 (145)
T ss_dssp SS---------------------SCSSCEEEEESS-CHHHHHHHSCC
T ss_pred hc---------------------CCCEEEEEECCc-CHHHHHHcCCC
Confidence 21 223456777774 56667666555
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.53 E-value=3.6e-14 Score=144.99 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=109.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++++++.|...+.. . . .+..+|+.||||||||++|+++|+.++.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~---------~-~---------------------~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 27 ECILPAFDKETFKSITSK---------G-K---------------------IPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TSCCCHHHHHHHHHHHHT---------T-C---------------------CCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred HHhCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 479999999999888841 0 0 11456788889999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh-hhhhhcccCCCCchhhHHHHHHHHHhCc
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEGT 436 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~-~~r~~~~~~~d~~~~~vq~aLL~lLEg~ 436 (581)
++.+++++... ..+...+........ ....+.||||||+|.+. .. .++.|++.|+..
T Consensus 76 ~~~i~~~~~~~-----~~i~~~~~~~~~~~~---~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~~ 133 (324)
T 3u61_B 76 MMFVNGSDCKI-----DFVRGPLTNFASAAS---FDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEAY 133 (324)
T ss_dssp EEEEETTTCCH-----HHHHTHHHHHHHBCC---CSSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHHH
T ss_pred EEEEcccccCH-----HHHHHHHHHHHhhcc---cCCCCeEEEEECCcccCcHH--------------HHHHHHHHHHhC
Confidence 99999876321 111122222111110 01257899999999998 55 799999999931
Q ss_pred eeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcch
Q 008014 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (581)
Q Consensus 437 ~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~ 516 (581)
..++.+|+++|...
T Consensus 134 ---------------------~~~~~iI~~~n~~~--------------------------------------------- 147 (324)
T 3u61_B 134 ---------------------SSNCSIIITANNID--------------------------------------------- 147 (324)
T ss_dssp ---------------------GGGCEEEEEESSGG---------------------------------------------
T ss_pred ---------------------CCCcEEEEEeCCcc---------------------------------------------
Confidence 23456677776321
Q ss_pred hhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHhCCCe
Q 008014 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGQA 570 (581)
Q Consensus 517 dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~k~~~~~gi~ 570 (581)
.+.+.+.+|+. .+.|..++++++.+|+. .+.+...+.++.+|++
T Consensus 148 -----~l~~~l~sR~~-~i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~~ 191 (324)
T 3u61_B 148 -----GIIKPLQSRCR-VITFGQPTDEDKIEMMK----QMIRRLTEICKHEGIA 191 (324)
T ss_dssp -----GSCTTHHHHSE-EEECCCCCHHHHHHHHH----HHHHHHHHHHHHHTCC
T ss_pred -----ccCHHHHhhCc-EEEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCCC
Confidence 14566777774 58888888888877777 3444445555555654
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.50 E-value=7.4e-14 Score=139.59 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=84.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchh---hhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~---~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.++||+||||||||++|+++|+.++.+|+.+++++. +.|... ...+...+..+. ...++||||||||.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIERL 136 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhhh
Confidence 689999999999999999999999999999988752 333321 233444444332 245889999999999
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHhhhcccCCC
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIG 486 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~rrfd~~Ig 486 (581)
...+.. + ......+++.|+..+++. .-...++++|+++|..+ ++++...++|...+.
T Consensus 137 ~~~~~~---~-~~~~~~~l~~L~~~~~~~------------------~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 137 LDYVPI---G-PRFSNLVLQALLVLLKKA------------------PPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp TTCBTT---T-TBCCHHHHHHHHHHTTCC------------------CSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred hccCCC---C-hhHHHHHHHHHHHHhcCc------------------cCCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 654221 1 112233677777777631 01234577888888765 333233456666666
Q ss_pred CCCh
Q 008014 487 FGAP 490 (581)
Q Consensus 487 F~~P 490 (581)
++..
T Consensus 195 ~p~l 198 (272)
T 1d2n_A 195 VPNI 198 (272)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 6544
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.49 E-value=3.5e-13 Score=138.00 Aligned_cols=144 Identities=22% Similarity=0.354 Sum_probs=91.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC-------CeEEeccccccc----------------------------cccccch
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV-------PFVIADATTLTQ----------------------------AGYVGED 375 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~-------~fv~i~~s~l~~----------------------------~gyvGe~ 375 (581)
+++||+||||||||++|+++++.++. ++ +|..... ..+.|..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 68999999999999999999998863 22 2221110 0111110
Q ss_pred hhhHHHHHhhhh-----hhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCC
Q 008014 376 VESILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (581)
Q Consensus 376 ~~~~l~~lf~~a-----~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~ 450 (581)
. +...+... ...+..+.++||||||||.+..+ +|+.|++.|+.+...+...+..
T Consensus 123 ~---~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~~---- 181 (350)
T 1g8p_A 123 D---IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGLS---- 181 (350)
T ss_dssp C---HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTCC----
T ss_pred h---hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecceE----
Confidence 0 01111111 12233456889999999999887 8999999999655444332221
Q ss_pred CCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcc
Q 008014 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (581)
Q Consensus 451 ~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~R 530 (581)
. -...++++|+++|..+ ..+.+.+++|
T Consensus 182 ---~-~~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R 208 (350)
T 1g8p_A 182 ---I-RHPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDR 208 (350)
T ss_dssp ---E-EEECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTT
T ss_pred ---E-eeCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhh
Confidence 1 1234688888887311 0266889999
Q ss_pred cCeEEEcCCC-CHHHHHHHHhh
Q 008014 531 FPVLVSLLAL-TENQLVQVLTE 551 (581)
Q Consensus 531 f~~iV~l~~L-sedeL~~Il~e 551 (581)
|+..+.+..+ ..++..+|+..
T Consensus 209 ~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 209 FGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp CSEEEECCCCCSHHHHHHHHHH
T ss_pred cceEEEcCCCCcHHHHHHHHHH
Confidence 9888999998 45555577764
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.48 E-value=4.3e-13 Score=138.76 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=46.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
.++|++.+++.+..++.. +.... .++.++||+||||||||++|+++|+.++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~----~~~~~-----------------------~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEM----IREGK-----------------------IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHH----HHTTC-----------------------CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHH----HHcCC-----------------------CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 379999999987765531 10000 11268999999999999999999999964
Q ss_pred -CeEEecccccc
Q 008014 357 -PFVIADATTLT 367 (581)
Q Consensus 357 -~fv~i~~s~l~ 367 (581)
+++.+++..+.
T Consensus 98 ~~~~~~~~~~~~ 109 (368)
T 3uk6_A 98 TPFTAIAGSEIF 109 (368)
T ss_dssp CCEEEEEGGGGS
T ss_pred CCcccccchhhh
Confidence 78888876643
No 50
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=3.3e-14 Score=159.06 Aligned_cols=203 Identities=19% Similarity=0.220 Sum_probs=120.1
Q ss_pred ChHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHH
Q 008014 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (581)
Q Consensus 267 ~~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtL 346 (581)
....+.+.+...|+||+.+|+.+..++.. +..+. +.+ .......++||+||||||||++
T Consensus 285 ~~~~l~~~l~~~I~G~e~vk~al~~~l~~-------g~~~~-------------~~~-~~~r~~~~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 285 IRDRIISSIAPSIYGHWELKEALALALFG-------GVPKV-------------LED-TRIRGDIHILIIGDPGTAKSQM 343 (595)
T ss_dssp GGGTHHHHTSSTTSCCHHHHHHHTTTTTC-------CCCEE-------------TTT-TEECCSCCEEEEESSCCTHHHH
T ss_pred HHHHHHHhhcchhcChHHHHHHHHHHHhC-------CCccc-------------ccC-CCcCCCcceEEECCCchHHHHH
Confidence 34557778888999999999877554421 00000 001 1112235999999999999999
Q ss_pred HHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 347 AKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 347 AraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
|+++|+.++..++..... ....++.+..........+......+..+.++|+||||||++.++ +|
T Consensus 344 Ar~la~~~~r~~~~~~~~-~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q 408 (595)
T 3f9v_A 344 LQFISRVAPRAVYTTGKG-STAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DR 408 (595)
T ss_dssp HHSSSTTCSCEECCCTTC-STTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HH
T ss_pred HHHHHHhCCCceecCCCc-cccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hh
Confidence 999999987655432110 111222222111111111111122344567899999999999877 89
Q ss_pred HHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHH
Q 008014 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (581)
Q Consensus 427 ~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~ 506 (581)
+.|+++||++.+++...|... ....++.+|+|+|.. .++++....+ .
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~--------~~~~~~~vIaatNp~-------~G~~~~~~~~----~-------------- 455 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVA--------KLNARAAVIAAGNPK-------FGRYISERPV----S-------------- 455 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEE--------EECCCCEEEEEECCT-------TCCSCTTSCS----C--------------
T ss_pred hhhHHHHhCCEEEEecCCcEE--------EecCceEEEEEcCCc-------CCccCcccCc----h--------------
Confidence 999999998888764433221 123467788888853 2333211000 0
Q ss_pred HHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHh
Q 008014 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (581)
Q Consensus 507 ~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~ 550 (581)
+ +..+.+.+++||+.++.+.++..++..+|++
T Consensus 456 ---------~---ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~ 487 (595)
T 3f9v_A 456 ---------D---NINLPPTILSRFDLIFILKDQPGEQDRELAN 487 (595)
T ss_dssp ---------T---TTCSCSSSGGGCSCCEEECCTTHHHHHHHHH
T ss_pred ---------h---ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHH
Confidence 0 1137788999998777777766555333443
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.46 E-value=2.6e-13 Score=147.00 Aligned_cols=103 Identities=31% Similarity=0.432 Sum_probs=73.3
Q ss_pred cccChHHHH---HHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 278 FVIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 278 ~VvGqd~ak---~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.++||+.++ +.|...+.. . ...++||+||||||||++|++|++.+
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~---------~-----------------------~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEA---------G-----------------------HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHH---------T-----------------------CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhCCcHHHHhchHHHHHHHHc---------C-----------------------CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 389999999 677766641 0 01579999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+|+.+++.... ...+++.+..+........++||||||||.+... .|+.||..||
T Consensus 75 ~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le 131 (447)
T 3pvs_A 75 NADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIE 131 (447)
T ss_dssp TCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHH
T ss_pred CCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHh
Confidence 9999988875421 2234455554443333456899999999999876 7899999999
Q ss_pred C
Q 008014 435 G 435 (581)
Q Consensus 435 g 435 (581)
.
T Consensus 132 ~ 132 (447)
T 3pvs_A 132 D 132 (447)
T ss_dssp T
T ss_pred c
Confidence 3
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.46 E-value=1.6e-13 Score=126.07 Aligned_cols=115 Identities=24% Similarity=0.295 Sum_probs=75.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|+++.++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 70 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 479999999888877631 012689999999999999999999886
Q ss_pred -------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
+.+++.+++.++.. ..+.|.. ...+..++.... ....+.||+|||+|.+...+.. .....++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~------~~~~~~~ 140 (195)
T 1jbk_A 71 EVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKA------DGAMDAG 140 (195)
T ss_dssp CSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT------------CCCCH
T ss_pred CCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCcc------cchHHHH
Confidence 67788888876542 2233332 334444443221 1234669999999999765321 1112267
Q ss_pred HHHHHHHh
Q 008014 427 QALLKMLE 434 (581)
Q Consensus 427 ~aLL~lLE 434 (581)
+.|..+++
T Consensus 141 ~~l~~~~~ 148 (195)
T 1jbk_A 141 NMLKPALA 148 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777777
No 53
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.45 E-value=2e-13 Score=157.58 Aligned_cols=170 Identities=23% Similarity=0.335 Sum_probs=123.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++++++.|.+.+....... . .++...+ .++.++||+||||||||++|++||+.++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~--~----------------~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHP--A----------------LFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCG--G----------------GGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCH--H----------------HHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 48999999999999996332210 0 0111111 123689999999999999999999999999
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCce
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~ 437 (581)
++.+++.++. ..+.|+. +..+..+|+.+.. ..++++||||||.+...+.. ......+++++.|+.+|++..
T Consensus 266 ~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHS-SSSTTHH-HHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEchHhh-hhhhhhH-HHHHHHHHHHHHh----cCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhc
Confidence 9999999887 4577775 6777788877642 56899999999999887532 122333458899999999521
Q ss_pred eeecCCCcccCCCCCceeeccCcEEEEecCCCcC-hHHHHHh-hhcccCCCCCChhhhh
Q 008014 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (581)
Q Consensus 438 v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~-Le~~l~~-rrfd~~IgF~~P~~e~ 494 (581)
...++++|+++|..+ ++..+.+ ++|+..+.++.|+.+.
T Consensus 337 -------------------~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 337 -------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp -------------------TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred -------------------ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHH
Confidence 123567788888765 6655554 5888889998887664
No 54
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.44 E-value=4.1e-13 Score=147.47 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=82.7
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
...+.+.+.+.|+|++++++.+..++. ..+++||+||||||||++|
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~----------------------------------~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHH----------------------------------HTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh----------------------------------cCCeeEeecCchHHHHHHH
Confidence 456788889999999999998877663 2379999999999999999
Q ss_pred HHHHHHhC--CCeEEeccccccccccccchhhhHH--HHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 348 KTLARYVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 348 raLA~~l~--~~fv~i~~s~l~~~gyvGe~~~~~l--~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
+++|+.++ .+|..+.+.-.+...++|....... ...+..+.... ...++|||||||+++.++
T Consensus 59 raLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~-l~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 59 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY-LPEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS-GGGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC-CCcceeeeHHhHhhhcHH-------------
Confidence 99999884 3555555532121222331100000 11222111100 124679999999998877
Q ss_pred hHHHHHHHHHhCceeee
Q 008014 424 GVQQALLKMLEGTVVNV 440 (581)
Q Consensus 424 ~vq~aLL~lLEg~~v~i 440 (581)
+|+.|+++|+++.+.+
T Consensus 125 -~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN 140 (500)
T ss_dssp -HHHHHHHHHHSSEEEC
T ss_pred -HHHHHHHHHHHHhccC
Confidence 8999999999887765
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.40 E-value=5e-12 Score=118.81 Aligned_cols=105 Identities=28% Similarity=0.384 Sum_probs=71.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++++++.+...+... ...+++|+||+|||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4799999999998887410 11469999999999999999999876
Q ss_pred --CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHH
Q 008014 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (581)
Q Consensus 355 --~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~l 432 (581)
...++.+++++..... .....+....... ......+.+|+|||+|.+... .++.|+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCHH----HHHHHHHHHHTSC--CSTTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccChH----HHHHHHHHHhccc--CCCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 3457777775533110 1111121111110 011246789999999999876 78889999
Q ss_pred Hh
Q 008014 433 LE 434 (581)
Q Consensus 433 LE 434 (581)
++
T Consensus 126 l~ 127 (226)
T 2chg_A 126 ME 127 (226)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 56
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.37 E-value=1.7e-13 Score=125.16 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=73.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++.+++.+.+.+.... ....+|||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------------------------KRTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------------------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 47999999999888884110 0126899999999999999999998887 9
Q ss_pred eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhC
Q 008014 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg 435 (581)
|+.++|+++... + ....+. .+.+++|||||||.+... .|..|+++|+.
T Consensus 54 ~~~~~~~~~~~~-~--------~~~~~~-------~a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 54 WVSPARVEYLID-M--------PMELLQ-------KAEGGVLYVGDIAQYSRN--------------IQTGITFIIGK 101 (143)
T ss_dssp EECCSSTTHHHH-C--------HHHHHH-------HTTTSEEEEEECTTCCHH--------------HHHHHHHHHHH
T ss_pred eEEechhhCChH-h--------hhhHHH-------hCCCCeEEEeChHHCCHH--------------HHHHHHHHHHh
Confidence 999999876521 1 222332 245689999999999887 89999999993
No 57
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.35 E-value=1.5e-12 Score=137.40 Aligned_cols=177 Identities=22% Similarity=0.350 Sum_probs=116.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~- 356 (581)
.++|++.+++.+...+. +.. ....++++.|++||||+++|+++....+.
T Consensus 130 ~~ig~s~~~~~~~~~~~----~~a--------------------------~~~~~vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIP----KIA--------------------------KSKAPVLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp CCCCCSHHHHHHHHHHH----HHH--------------------------TSCSCEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccccchHHHHHHhhhh----hhh--------------------------ccchhheEEeCCCchHHHHHHHHHHhcccc
Confidence 36888888887776663 110 11257999999999999999999988754
Q ss_pred -CeEEecccccccc----ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHH
Q 008014 357 -PFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (581)
Q Consensus 357 -~fv~i~~s~l~~~----gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~ 431 (581)
.|+.++|+.+.+. .+.|.. .+.+..........+..+.+++||||||+.++.. +|..||+
T Consensus 180 ~~fv~vnc~~~~~~~~~~~lfg~~-~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~--------------~Q~~Ll~ 244 (368)
T 3dzd_A 180 GAFVDLNCASIPQELAESELFGHE-KGAFTGALTRKKGKLELADQGTLFLDEVGELDQR--------------VQAKLLR 244 (368)
T ss_dssp SCEEEEESSSSCTTTHHHHHHEEC-SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHH--------------HHHHHHH
T ss_pred CCcEEEEcccCChHHHHHHhcCcc-ccccCCcccccCChHhhcCCCeEEecChhhCCHH--------------HHHHHHH
Confidence 3999999986531 111111 0111111111223455678899999999999988 9999999
Q ss_pred HHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHHHHHHh
Q 008014 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (581)
Q Consensus 432 lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~~~l~~ 511 (581)
+|+.+.+.- .+.... ...++++|++|+ .++++.+..++
T Consensus 245 ~l~~~~~~~-------~g~~~~---~~~~~rii~at~-~~l~~~v~~g~------------------------------- 282 (368)
T 3dzd_A 245 VLETGSFTR-------LGGNQK---IEVDIRVISATN-KNLEEEIKKGN------------------------------- 282 (368)
T ss_dssp HHHHSEECC-------BTCCCB---EECCCEEEEEES-SCHHHHHHTTS-------------------------------
T ss_pred HHHhCCccc-------CCCCcc---eeeeeEEEEecC-CCHHHHHHcCC-------------------------------
Confidence 999654431 111111 134578889888 45665555433
Q ss_pred hhcchhhhhcCCChhhhcccCeE-EEcCCCCH--HHHHHHHhhh
Q 008014 512 TVESSDLIAYGLIPEFVGRFPVL-VSLLALTE--NQLVQVLTEP 552 (581)
Q Consensus 512 ~v~~~dl~~~gl~PEfl~Rf~~i-V~l~~Lse--deL~~Il~e~ 552 (581)
|.+++..|+..+ +.+++|.+ +|+..++...
T Consensus 283 -----------fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~ 315 (368)
T 3dzd_A 283 -----------FREDLYYRLSVFQIYLPPLRERGKDVILLAEYF 315 (368)
T ss_dssp -----------SCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHH
T ss_pred -----------ccHHHHHHhCCeEEeCCChhhchhhHHHHHHHH
Confidence 566777777554 67888877 7887777733
No 58
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.33 E-value=4.4e-12 Score=134.51 Aligned_cols=126 Identities=17% Similarity=0.353 Sum_probs=83.6
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc----cccccchhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~----~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
..+|++.|++|||||++|++++... +.+|+.++|+.+.+ +...|.. .+.+..........+..+.+|+||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~-~g~~tga~~~~~g~~~~a~~gtlfld 238 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE-KGAFTGAVSSKEGFFELADGGTLFLD 238 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC-TTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC-CCCCCCcccccCCceeeCCCcEEEEc
Confidence 3678999999999999999999877 47899999998653 1122221 00111111112234556788999999
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhc
Q 008014 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrf 481 (581)
||+.++.. +|..||++|+.+.+.- .| ... ....++++|+++| .++++.+.+++|
T Consensus 239 ei~~l~~~--------------~q~~Ll~~l~~~~~~~--~g-----~~~---~~~~~~rii~at~-~~l~~~~~~g~f 292 (387)
T 1ny5_A 239 EIGELSLE--------------AQAKLLRVIESGKFYR--LG-----GRK---EIEVNVRILAATN-RNIKELVKEGKF 292 (387)
T ss_dssp SGGGCCHH--------------HHHHHHHHHHHSEECC--BT-----CCS---BEECCCEEEEEES-SCHHHHHHTTSS
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEe--CC-----CCc---eeeccEEEEEeCC-CCHHHHHHcCCc
Confidence 99999988 9999999999655431 11 111 1234578899888 456666655443
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.31 E-value=1.4e-12 Score=141.60 Aligned_cols=98 Identities=28% Similarity=0.338 Sum_probs=61.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+|++..++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 181 ~iiGr~~~i~~l~~~l~r--------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCcHHHHHHHHHHHhc--------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 389999999998877741 023689999999999999999999986
Q ss_pred -------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 355 -------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
+.+++.++++ ..|.|+. +..+..++.... ...++||||| ... .+++
T Consensus 229 ~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~--------------~a~~ 281 (468)
T 3pxg_A 229 EVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI--------------DASN 281 (468)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch--------------hHHH
Confidence 7788888887 3466654 445556655443 2468899999 111 1677
Q ss_pred HHHHHHh
Q 008014 428 ALLKMLE 434 (581)
Q Consensus 428 aLL~lLE 434 (581)
.|+..|+
T Consensus 282 ~L~~~L~ 288 (468)
T 3pxg_A 282 ILKPSLA 288 (468)
T ss_dssp --CCCTT
T ss_pred HHHHhhc
Confidence 7887777
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=3.9e-11 Score=113.68 Aligned_cols=112 Identities=27% Similarity=0.291 Sum_probs=67.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++++++.|...+.. . . .+..++|+||+|||||++|+.+++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~---------~-~---------------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSL---------G-R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHH---------T-C---------------------CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHc---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 479999999999887741 0 0 11468899999999999999999877432
Q ss_pred eE--Eeccc--------------cccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCc
Q 008014 358 FV--IADAT--------------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (581)
Q Consensus 358 fv--~i~~s--------------~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~ 421 (581)
.. ...+. ++.............+..++...........+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~----------- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH----------- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----------
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----------
Confidence 11 00000 0000000000111223333333211111235689999999998766
Q ss_pred hhhHHHHHHHHHh
Q 008014 422 GEGVQQALLKMLE 434 (581)
Q Consensus 422 ~~~vq~aLL~lLE 434 (581)
.++.|++.++
T Consensus 142 ---~~~~l~~~l~ 151 (250)
T 1njg_A 142 ---SFNALLKTLE 151 (250)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHh
Confidence 7889999998
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.28 E-value=1.4e-11 Score=142.72 Aligned_cols=168 Identities=22% Similarity=0.298 Sum_probs=100.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+|+++.++.+...+.. + .+.+++|+||||||||++|+++|+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~---------~-----------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~ 218 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLR---------R-----------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKG 218 (854)
T ss_dssp CCCSCHHHHHHHHHHHHC---------S-----------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHhc---------C-----------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 379999999888877631 0 12689999999999999999999887
Q ss_pred -------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
+.+++.++++.+.. ..|.|+. +..+..++..... ...+.||||||+|.+...+... ....++
T Consensus 219 ~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~------g~~~~~ 288 (854)
T 1qvr_A 219 DVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKAE------GAVDAG 288 (854)
T ss_dssp CSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC----------------------
T ss_pred CCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCcc------chHHHH
Confidence 77899999988753 3466765 5666666655431 1246799999999998653221 112267
Q ss_pred HHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcChHHHHHhhhcccCCCCCChhhhhhhcCCCchHHHH
Q 008014 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (581)
Q Consensus 427 ~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~Le~~l~~rrfd~~IgF~~P~~e~~~~~~~~~~~~~ 506 (581)
+.|..+++.+ .+.+|++++....
T Consensus 289 ~~L~~~l~~~-----------------------~i~~I~at~~~~~---------------------------------- 311 (854)
T 1qvr_A 289 NMLKPALARG-----------------------ELRLIGATTLDEY---------------------------------- 311 (854)
T ss_dssp ---HHHHHTT-----------------------CCCEEEEECHHHH----------------------------------
T ss_pred HHHHHHHhCC-----------------------CeEEEEecCchHH----------------------------------
Confidence 7788888721 2345666652210
Q ss_pred HHHHhhhcchhhhhcCCChhhhcccCeEEEcCCCCHHHHHHHHhhhHHHHHHHHH
Q 008014 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (581)
Q Consensus 507 ~~l~~~v~~~dl~~~gl~PEfl~Rf~~iV~l~~LsedeL~~Il~e~l~~l~~q~~ 561 (581)
.. + .+.+.+..||+. +.+..++.++..+|+. .+.++|.
T Consensus 312 ---~~-~--------~~d~aL~rRf~~-i~l~~p~~~e~~~iL~----~~~~~~~ 349 (854)
T 1qvr_A 312 ---RE-I--------EKDPALERRFQP-VYVDEPTVEETISILR----GLKEKYE 349 (854)
T ss_dssp ---HH-H--------TTCTTTCSCCCC-EEECCCCHHHHHHHHH----HHHHHHH
T ss_pred ---hh-h--------ccCHHHHhCCce-EEeCCCCHHHHHHHHH----hhhhhhh
Confidence 00 1 145788889986 8999999999999997 4555553
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.27 E-value=4.4e-12 Score=116.72 Aligned_cols=116 Identities=26% Similarity=0.319 Sum_probs=75.6
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++++++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred hhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999988888776630 013689999999999999999999887
Q ss_pred -------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHH
Q 008014 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq 426 (581)
+.+++.+++..+.. ..+.+.. ...+..++..... ...+.+|+|||+|.+...+.. ......++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~ 141 (187)
T 2p65_A 71 DVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAV-----AEGALDAG 141 (187)
T ss_dssp CSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSS-----CTTSCCTH
T ss_pred CCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccc-----cccchHHH
Confidence 66777777766432 1133322 3334444333221 124679999999999754221 11112267
Q ss_pred HHHHHHHh
Q 008014 427 QALLKMLE 434 (581)
Q Consensus 427 ~aLL~lLE 434 (581)
+.|+.+++
T Consensus 142 ~~l~~~~~ 149 (187)
T 2p65_A 142 NILKPMLA 149 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 78888887
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=6.3e-12 Score=128.59 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=70.9
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
.++|++++++.|...+.. ...+++||+||||||||++|+++++.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKS--------------------------------ANLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTC--------------------------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhc--------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999988877630 0114699999999999999999998763
Q ss_pred ----CCeEEeccccccccccccchhhhHHHHHhhhhh--------hhHHhhccCeEEehhhhhhhhhhhhcccCCCCchh
Q 008014 356 ----VPFVIADATTLTQAGYVGEDVESILYKLLTVSD--------YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (581)
Q Consensus 356 ----~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~--------~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~ 423 (581)
..++.+++++....+.+.+ .+........ .........||+|||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIVRE----KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHHTT----HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHHHH----HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 4577788776432111111 1111110000 0000124569999999999876
Q ss_pred hHHHHHHHHHh
Q 008014 424 GVQQALLKMLE 434 (581)
Q Consensus 424 ~vq~aLL~lLE 434 (581)
.++.|++.|+
T Consensus 149 -~~~~Ll~~le 158 (353)
T 1sxj_D 149 -AQSALRRTME 158 (353)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 7899999999
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.2e-11 Score=128.53 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=105.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.+.|.++..+.|...|...... -.+++++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678888888888777522111 123689999999999999999999888
Q ss_pred -------CCCeEEecccccccc---------ccccc-----hhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 355 -------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~~---------gyvGe-----~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
...++.++|..+... .+.|+ .....+...|..... ....+.||+|||+|.+. .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~--- 146 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S--- 146 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C---
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c---
Confidence 235788998775431 01111 113344444443210 12456899999999997 2
Q ss_pred cccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcCh-HHHHHhhhcccCCCCCChhh
Q 008014 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVR 492 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~L-e~~l~~rrfd~~IgF~~P~~ 492 (581)
..+...|+++.+ ...+++.+|+.+|..++ +..
T Consensus 147 ---------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~~~----------------- 179 (318)
T 3te6_A 147 ---------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIREQ----------------- 179 (318)
T ss_dssp ---------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCHHH-----------------
T ss_pred ---------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccchhh-----------------
Confidence 014444444433 23456788888875442 111
Q ss_pred hhhhcCCCchHHHHHHHHhhhcchhhhhcCCChhhhcccC-eEEEcCCCCHHHHHHHHhhhHHH
Q 008014 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNA 555 (581)
Q Consensus 493 e~~~~~~~~~~~~~~~l~~~v~~~dl~~~gl~PEfl~Rf~-~iV~l~~LsedeL~~Il~e~l~~ 555 (581)
+.+.+.+|+. ..+.|.+|+.+|+.+|+..-+..
T Consensus 180 ------------------------------L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 ------------------------------INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp ------------------------------HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------------------------cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1234556775 57899999999999999954443
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=4e-11 Score=120.95 Aligned_cols=105 Identities=29% Similarity=0.387 Sum_probs=71.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC--
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~-- 355 (581)
.++|++++++.|...+.. . ...++||+||||||||++|+++++.+.
T Consensus 26 ~~~g~~~~~~~l~~~l~~---------~-----------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKT---------G-----------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHH---------T-----------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHc---------C-----------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 489999999999887741 0 114799999999999999999998863
Q ss_pred ---CCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHH
Q 008014 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (581)
Q Consensus 356 ---~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~l 432 (581)
..++.+++++..... .....+....... .+....+.||+|||+|.+... .++.|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTK--PIGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSC--CGGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhC--CcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 236677765432110 0111122211111 111245789999999999876 79999999
Q ss_pred Hh
Q 008014 433 LE 434 (581)
Q Consensus 433 LE 434 (581)
|+
T Consensus 134 le 135 (327)
T 1iqp_A 134 ME 135 (327)
T ss_dssp HH
T ss_pred HH
Confidence 99
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=3.5e-11 Score=124.44 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=48.9
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh--
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-- 354 (581)
+.++|+++.++.+...+...... -.+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999998888421110 012579999999999999999999887
Q ss_pred ---------CCCeEEeccccc
Q 008014 355 ---------NVPFVIADATTL 366 (581)
Q Consensus 355 ---------~~~fv~i~~s~l 366 (581)
+.+++.++|.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHH
T ss_pred HhhhhcCCCCceEEEEECccC
Confidence 888999998754
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.25 E-value=5e-12 Score=144.56 Aligned_cols=98 Identities=28% Similarity=0.338 Sum_probs=63.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.|+|+++.++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~--------------------------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~ 228 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (758)
T ss_dssp CCCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCchHHHHHHHHHHhC--------------------------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcC
Confidence 389999999999887741 023689999999999999999999987
Q ss_pred -------CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHH
Q 008014 355 -------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~ 427 (581)
+.+++.+++ ...|.|+. +..++.++..+. ...++||||| ... ..++
T Consensus 229 ~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~--------------~~~~ 281 (758)
T 3pxi_A 229 EVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI--------------DASN 281 (758)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch--------------hHHH
Confidence 777887777 24567765 566677766543 2568999999 111 1677
Q ss_pred HHHHHHh
Q 008014 428 ALLKMLE 434 (581)
Q Consensus 428 aLL~lLE 434 (581)
.|+..|+
T Consensus 282 ~L~~~l~ 288 (758)
T 3pxi_A 282 ILKPSLA 288 (758)
T ss_dssp --CCCTT
T ss_pred HHHHHHh
Confidence 7877777
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=1.2e-10 Score=127.69 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=78.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+|+|++.+++.|...+..............+ . . -.....++||+||||||||++|+++|+.++.+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g--~-~------------~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAG--K-D------------GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCC--T-T------------STTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccC--c-c------------CCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3899999999999888532111101111100 0 0 00123689999999999999999999999999
Q ss_pred eEEeccccccccccccch-hhh-----HHHHHhhhhhh-hHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHH
Q 008014 358 FVIADATTLTQAGYVGED-VES-----ILYKLLTVSDY-NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (581)
Q Consensus 358 fv~i~~s~l~~~gyvGe~-~~~-----~l~~lf~~a~~-~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL 430 (581)
++.++++++... ++.+. ... .+...+..+.. ......+.||||||+|.+..... ...+.|+
T Consensus 105 ~i~in~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~ 172 (516)
T 1sxj_A 105 ILEQNASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLA 172 (516)
T ss_dssp EEEECTTSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHH
T ss_pred EEEEeCCCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHH
Confidence 999999886531 11110 000 01111111100 00124578999999999976411 1567888
Q ss_pred HHHh
Q 008014 431 KMLE 434 (581)
Q Consensus 431 ~lLE 434 (581)
++++
T Consensus 173 ~~l~ 176 (516)
T 1sxj_A 173 QFCR 176 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8888
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.23 E-value=2.3e-11 Score=122.24 Aligned_cols=105 Identities=28% Similarity=0.383 Sum_probs=71.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++++++.|...+.. . ...++||+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~---------~-----------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER---------K-----------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT---------T-----------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHhC---------C-----------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 379999999988766630 0 11469999999999999999999886
Q ss_pred --CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHH
Q 008014 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (581)
Q Consensus 355 --~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~l 432 (581)
+.+++.+++++..... .....+........ +....+.||+|||+|.+... .++.|++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T 2chq_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (319)
T ss_dssp CHHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGG
T ss_pred cccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 3357788887643211 11222222211111 11235789999999999876 78899999
Q ss_pred Hh
Q 008014 433 LE 434 (581)
Q Consensus 433 LE 434 (581)
|+
T Consensus 126 le 127 (319)
T 2chq_A 126 ME 127 (319)
T ss_dssp TS
T ss_pred HH
Confidence 98
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=6.4e-11 Score=121.75 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=65.9
Q ss_pred ccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh--
Q 008014 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (581)
Q Consensus 277 ~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l-- 354 (581)
+.++|++..++.+...+..... .....+++|+||||||||++|+.+++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999988877631000 0123689999999999999999999888
Q ss_pred -------CCCeEEeccccccccc---------------cccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 355 -------NVPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 355 -------~~~fv~i~~s~l~~~g---------------yvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
+.+++.++|....... ..|......+..++.... ....+.||||||+|.+...
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHS
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhccc
Confidence 7788999987643210 111111121222221111 1123669999999999764
No 71
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.21 E-value=2.7e-11 Score=135.45 Aligned_cols=44 Identities=39% Similarity=0.671 Sum_probs=38.1
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.++||+.+++.+...+. ...+++|+|||||||||+|++|++.+.
T Consensus 42 ~i~G~~~~l~~l~~~i~----------------------------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAAN----------------------------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHHHHH----------------------------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhcccccc----------------------------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 47999999998887774 125899999999999999999999884
No 72
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.21 E-value=8.1e-11 Score=120.40 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=57.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+.+....... ..+.. ....++||||||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTI-NEFRN-----MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCH-HHHHH-----HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcH-HHHHH-----HhcCCCEEEEcCcccc
Confidence 689999999999999999999988 88999999877542 12211100000 01110 1134789999999999
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..++. .|+.|+..++
T Consensus 111 ~~~~~------------~~~~l~~~l~ 125 (324)
T 1l8q_A 111 SGKER------------TQIEFFHIFN 125 (324)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCChH------------HHHHHHHHHH
Confidence 76321 5777777776
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.20 E-value=8.3e-11 Score=134.15 Aligned_cols=99 Identities=29% Similarity=0.439 Sum_probs=71.7
Q ss_pred hhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++. |+|++..++.+...+.. ..+.++||+||||||||++|+++++.
T Consensus 184 ~~d~-~iGr~~~i~~l~~~l~~--------------------------------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 184 GIDP-LIGREKELERAIQVLCR--------------------------------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CSCC-CCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCC-ccCCHHHHHHHHHHHhc--------------------------------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4444 89999999988877730 02368999999999999999999987
Q ss_pred h----------CCCeEEeccccccc-cccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 354 l----------~~~fv~i~~s~l~~-~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
+ +..++.+++..+.. ..|.|+. +..+..++.... ...++||||||++.+...
T Consensus 231 l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~ 293 (758)
T 1r6b_X 231 IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGA 293 (758)
T ss_dssp HHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTS
T ss_pred HHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhc
Confidence 7 55677777776552 3466664 666666665543 235789999999999765
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.20 E-value=2.6e-10 Score=118.08 Aligned_cols=105 Identities=32% Similarity=0.498 Sum_probs=71.5
Q ss_pred hhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 275 Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
|++ ++||+.+++.+...+.....+ .+ +..+++|+|||||||||||+++|+.+
T Consensus 24 l~~-~~g~~~~~~~l~~~i~~~~~~-------~~--------------------~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDE-FIGQENVKKKLSLALEAAKMR-------GE--------------------VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGG-CCSCHHHHHHHHHHHHHHHHH-------TC--------------------CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHH-ccCcHHHHHHHHHHHHHHHhc-------CC--------------------CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 444 689999999888777411000 00 12579999999999999999999999
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.++...++..+.. +. .+...+.. .....|+||||++.+.+. +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~~----~~----~l~~~~~~------~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLVK----QG----DMAAILTS------LERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCCS----HH----HHHHHHHH------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhcC----HH----HHHHHHHH------ccCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 98877665543321 11 12222211 124679999999999765 7888888887
Q ss_pred C
Q 008014 435 G 435 (581)
Q Consensus 435 g 435 (581)
.
T Consensus 128 ~ 128 (334)
T 1in4_A 128 D 128 (334)
T ss_dssp T
T ss_pred h
Confidence 4
No 75
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=7.3e-11 Score=118.80 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=70.4
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|++.+++.|...+.. . ...+++|+||+|+|||++|+++++.+
T Consensus 22 ~~~g~~~~~~~l~~~l~~---------~-----------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKD---------G-----------------------NMPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp GCCSCTHHHHHHHHHHHS---------C-----------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHCCHHHHHHHHHHHHc---------C-----------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 379999999998887741 0 11459999999999999999999886
Q ss_pred --CCCeEEeccccccccccccchhhhHHHHHhhhhh---hhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHH
Q 008014 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (581)
Q Consensus 355 --~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~---~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aL 429 (581)
+.+++.+++++... ...+++.+.... ..+....+.||+|||+|.+... .++.|
T Consensus 70 ~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L 127 (323)
T 1sxj_B 70 SYADGVLELNASDDRG--------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQAL 127 (323)
T ss_dssp GHHHHEEEECTTSCCS--------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTT
T ss_pred cccCCEEEecCccccC--------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHH
Confidence 34567777765321 112222222111 0000234679999999999876 78899
Q ss_pred HHHHh
Q 008014 430 LKMLE 434 (581)
Q Consensus 430 L~lLE 434 (581)
++.++
T Consensus 128 ~~~le 132 (323)
T 1sxj_B 128 RRTME 132 (323)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.19 E-value=1.3e-10 Score=119.69 Aligned_cols=104 Identities=30% Similarity=0.356 Sum_probs=67.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|++++++.|...+.. . + .+..+||+||+|||||++|+++++.++..
T Consensus 17 ~~vg~~~~~~~L~~~l~~---------~-~---------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSL---------G-R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TSCSCHHHHHHHHHHHHH---------T-C---------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hccCcHHHHHHHHHHHHh---------C-C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999888741 0 0 01357899999999999999999988532
Q ss_pred ------------------------eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhh
Q 008014 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (581)
Q Consensus 358 ------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~ 413 (581)
++.++... ..+. ..++.++...........+.||+|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--- 134 (373)
T 1jr3_A 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (373)
T ss_dssp TCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH---
Confidence 12222211 0111 112333322211111234679999999999876
Q ss_pred cccCCCCchhhHHHHHHHHHh
Q 008014 414 LNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 414 ~~~~~d~~~~~vq~aLL~lLE 434 (581)
.++.|++.++
T Consensus 135 -----------~~~~Ll~~le 144 (373)
T 1jr3_A 135 -----------SFNALLKTLE 144 (373)
T ss_dssp -----------HHHHHHHHHH
T ss_pred -----------HHHHHHHHHh
Confidence 7899999999
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.5e-10 Score=119.42 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=72.2
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCc--cEEEECCCCCChHHHHHHHHHHh-
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~--~VLL~GPPGTGKTtLAraLA~~l- 354 (581)
.++|++..++.|...+..... .. .+. +++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----NP------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----ST------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHc----CC------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999888852111 00 113 78999999999999999999988
Q ss_pred ---CCCeEEecccccccc-cc--------------ccchhhhHHHHHhhhhhhhHH-hhccCeEEehhhhhhhhhhhhcc
Q 008014 355 ---NVPFVIADATTLTQA-GY--------------VGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITKKAESLN 415 (581)
Q Consensus 355 ---~~~fv~i~~s~l~~~-gy--------------vGe~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEID~l~~~r~~~~ 415 (581)
+.+++.++|...... .. .+......+..+.. .+. ...+.||+|||++.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~vlilDE~~~l~~~----- 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE----HLRERDLYMFLVLDDAFNLAPD----- 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH----HHHHTTCCEEEEEETGGGSCHH-----
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHH----HHhhcCCeEEEEEECccccchH-----
Confidence 567888887654310 00 01111111111111 111 134679999999999544
Q ss_pred cCCCCchhhHHHHHHHHHh
Q 008014 416 ISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 416 ~~~d~~~~~vq~aLL~lLE 434 (581)
.+..|+.+++
T Consensus 141 ---------~~~~L~~~~~ 150 (389)
T 1fnn_A 141 ---------ILSTFIRLGQ 150 (389)
T ss_dssp ---------HHHHHHHHTT
T ss_pred ---------HHHHHHHHHH
Confidence 8899999987
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=6.1e-11 Score=122.28 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh------
Q 008014 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (581)
Q Consensus 281 Gqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l------ 354 (581)
||+++++.|...+... ...++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~--------------------------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------------------------------EGISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTC--------------------------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCC--------------------------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 7888898888888410 01578899999999999999999864
Q ss_pred CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 355 ~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
...++.+++++- ..+. ..++++.+.+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~~----~~~i---d~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEGE----NIGI---DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSSS----CBCH---HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCcC----CCCH---HHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 345666665421 1222 224444443322111234679999999999877 8999999999
Q ss_pred CceeeecCCCcccCCCCCceeeccCcEEEEecC-CCcChHHHHHhhhcccCCCCCChhhhh
Q 008014 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-AFVDIEKTISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tg-n~~~Le~~l~~rrfd~~IgF~~P~~e~ 494 (581)
+. ..+++||+++ +...+-++++.| .+.|..+..+.
T Consensus 108 ep---------------------~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~ 143 (305)
T 2gno_A 108 EP---------------------PEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKE 143 (305)
T ss_dssp SC---------------------CTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHH
T ss_pred CC---------------------CCCeEEEEEECChHhChHHHHce----eEeCCCCCHHH
Confidence 31 1234444443 433455666665 66776665544
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=3e-10 Score=117.28 Aligned_cols=103 Identities=25% Similarity=0.360 Sum_probs=68.2
Q ss_pred ccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCC--
Q 008014 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (581)
Q Consensus 279 VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~-- 356 (581)
++||+.+++.|...+.. . ...|++|+||||||||++|+++|+.+..
T Consensus 27 ~~g~~~~~~~L~~~i~~---------g-----------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDE---------G-----------------------KLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CCSCHHHHHHHHHHHHT---------T-----------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred hcCcHHHHHHHHHHHhc---------C-----------------------CCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 78999999998887741 0 0146899999999999999999998732
Q ss_pred ---CeEEeccccccccccccch-hhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHH
Q 008014 357 ---PFVIADATTLTQAGYVGED-VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (581)
Q Consensus 357 ---~fv~i~~s~l~~~gyvGe~-~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~l 432 (581)
.+..+++++.. |.+ +...+....+... .......|++|||+|.+... .+++|++.
T Consensus 75 ~~~~~~~~~~~~~~-----~~~~ir~~i~~~~~~~~--~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~ 133 (340)
T 1sxj_C 75 YSNMVLELNASDDR-----GIDVVRNQIKDFASTRQ--IFSKGFKLIILDEADAMTNA--------------AQNALRRV 133 (340)
T ss_dssp HHHHEEEECTTSCC-----SHHHHHTHHHHHHHBCC--SSSCSCEEEEETTGGGSCHH--------------HHHHHHHH
T ss_pred ccceEEEEcCcccc-----cHHHHHHHHHHHHhhcc--cCCCCceEEEEeCCCCCCHH--------------HHHHHHHH
Confidence 24556654421 111 1111111111000 00123679999999999876 79999999
Q ss_pred Hh
Q 008014 433 LE 434 (581)
Q Consensus 433 LE 434 (581)
||
T Consensus 134 le 135 (340)
T 1sxj_C 134 IE 135 (340)
T ss_dssp HH
T ss_pred Hh
Confidence 99
No 80
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.15 E-value=2.9e-11 Score=131.57 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=91.9
Q ss_pred hHHHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHH
Q 008014 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (581)
Q Consensus 268 ~~ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLA 347 (581)
...+.+.+.. |+||+.+|+.|..++...-. .....-||||.|+||| ||++|
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~---------------------------k~rgdihVLL~G~PGt-KS~La 255 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVG---------------------------KNSERLHVLLAGYPVV-CSEIL 255 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCS---------------------------SGGGCCCEEEESCHHH-HHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCcc---------------------------ccCCceeEEEECCCCh-HHHHH
Confidence 4557788889 99999999988877731000 0112249999999999 99999
Q ss_pred HHH-HHHhCCCeEEe-ccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhH
Q 008014 348 KTL-ARYVNVPFVIA-DATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (581)
Q Consensus 348 raL-A~~l~~~fv~i-~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~v 425 (581)
+++ ++.+....+.. .++. ..++.+. .... .. +....+.+..++.+|+|||||+++.++ +
T Consensus 256 r~i~~~i~pR~~ft~g~~ss--~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~ 316 (506)
T 3f8t_A 256 HHVLDHLAPRGVYVDLRRTE--LTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------H 316 (506)
T ss_dssp HHHHHHTCSSEEEEEGGGCC--HHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------H
T ss_pred HHHHHHhCCCeEEecCCCCC--ccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------H
Confidence 999 77664322211 1111 0011111 0000 11 222233455577899999999999988 9
Q ss_pred HHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCc
Q 008014 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (581)
Q Consensus 426 q~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~ 470 (581)
|++|++.||++++++. |. .+ ..++.+|+|+|..
T Consensus 317 qsaLlEaMEe~~VtI~--G~---------~l-parf~VIAA~NP~ 349 (506)
T 3f8t_A 317 RWALMEAMDKGTVTVD--GI---------AL-NARCAVLAAINPG 349 (506)
T ss_dssp HHHHHHHHHHSEEEET--TE---------EE-ECCCEEEEEECCC
T ss_pred HHHHHHHHhCCcEEEC--CE---------Ec-CCCeEEEEEeCcc
Confidence 9999999999988883 21 22 3457788888853
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=8.1e-10 Score=113.49 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+++|+||+|+||||+++++++.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999954
No 82
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.06 E-value=9e-10 Score=105.57 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=54.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
.+++|+||||||||++|+++++.+ +.+++.+++.++... + . +.+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~----~~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----T----ALLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----G----GGGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----H----HHHHh------ccCCCEEEEeccccc
Confidence 689999999999999999999877 367788888765421 1 0 11111 145789999999998
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
..... .++.|+.+++
T Consensus 117 ~~~~~------------~~~~l~~~l~ 131 (242)
T 3bos_A 117 AGHPL------------WEEAIFDLYN 131 (242)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCCHH------------HHHHHHHHHH
Confidence 76511 3777888777
No 83
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=6e-10 Score=114.25 Aligned_cols=116 Identities=19% Similarity=0.309 Sum_probs=73.0
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh---
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l--- 354 (581)
.++|+++.++.|...+..... . .....++|+||+|||||++++.+++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----~------------------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----E------------------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----T------------------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 589999999988876631000 0 113688999999999999999999888
Q ss_pred ---CCCeEEecccccccc---------------ccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhhhhhccc
Q 008014 355 ---NVPFVIADATTLTQA---------------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (581)
Q Consensus 355 ---~~~fv~i~~s~l~~~---------------gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~r~~~~~ 416 (581)
+.+++.++|...... ...|.+....+..++.... ....+.||+|||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc----
Confidence 778888887643210 0111111122222221111 012377999999999975411
Q ss_pred CCCCchhhHHHHHHHHHh
Q 008014 417 SRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 417 ~~d~~~~~vq~aLL~lLE 434 (581)
..++..|+..++
T Consensus 146 ------~~~l~~l~~~~~ 157 (386)
T 2qby_A 146 ------DDILYKLSRINS 157 (386)
T ss_dssp ------STHHHHHHHHHH
T ss_pred ------CHHHHHHhhchh
Confidence 126778888886
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.04 E-value=2e-09 Score=111.35 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=72.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC------------------------eEEeccccccccccccchhhhHHHHHhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~------------------------fv~i~~s~l~~~gyvGe~~~~~l~~lf~~ 386 (581)
..+||+||+|+|||++|+++|+.+... +..++..+- ....+ ...++++.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 348899999999999999999987432 222222100 00111 1234444433
Q ss_pred hhhhHHhhccCeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEec
Q 008014 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (581)
Q Consensus 387 a~~~l~~a~~~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~t 466 (581)
...........|++|||+|.+... .+++||+.||+. ..++++|++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEep---------------------~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEEP---------------------PAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTSC---------------------CTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcCC---------------------CCCeEEEEE
Confidence 321111245689999999999876 799999999931 123444544
Q ss_pred CCCc-ChHHHHHhhhcccCCCCCChhhh
Q 008014 467 GAFV-DIEKTISERRQDSSIGFGAPVRA 493 (581)
Q Consensus 467 gn~~-~Le~~l~~rrfd~~IgF~~P~~e 493 (581)
++.. .+.+.++.|.. .+.|..++.+
T Consensus 145 t~~~~~l~~ti~SRc~--~~~~~~~~~~ 170 (334)
T 1a5t_A 145 TREPERLLATLRSRCR--LHYLAPPPEQ 170 (334)
T ss_dssp ESCGGGSCHHHHTTSE--EEECCCCCHH
T ss_pred eCChHhCcHHHhhcce--eeeCCCCCHH
Confidence 4433 35566665543 4666666544
No 85
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.03 E-value=1.6e-09 Score=116.76 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=56.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-----CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhh-ccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a-~~~ILfIDEI 404 (581)
.+++|+||||||||+||+++++.+ +.+++.+++.++.. .++..- .......+.. ... .+.||||||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEFRE-----KYRKKVDILLIDDV 203 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHH-HTTCHHHHHH-----HHTTTCSEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HcccHHHHHH-----HhcCCCCEEEEeCc
Confidence 689999999999999999999988 77888888876531 111110 0000000100 112 5789999999
Q ss_pred hhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 405 D~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+.+...+. .|+.|+..++
T Consensus 204 ~~l~~~~~------------~q~~l~~~l~ 221 (440)
T 2z4s_A 204 QFLIGKTG------------VQTELFHTFN 221 (440)
T ss_dssp GGGSSCHH------------HHHHHHHHHH
T ss_pred ccccCChH------------HHHHHHHHHH
Confidence 99986311 6778888876
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.79 E-value=1.2e-08 Score=95.37 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=49.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh----CCCeEEeccccccccccccchhhhHHHHHhhhh---hhhHHhhccCeEEehh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVS---DYNVAAAQQGIVYIDE 403 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l----~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a---~~~l~~a~~~ILfIDE 403 (581)
..++|+||||||||+|++++++.+ +..++.+++.++.. .+...+... ...-....+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 578899999999999999999877 55555566554431 011111100 0001124678999999
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 404 ID~l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
++....+ ...+..|.++++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9853221 114566777776
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.69 E-value=6.3e-08 Score=100.75 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=43.4
Q ss_pred cccChHHHHHHHHHHH-HhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEE--ECCCCCChHHHHHHHHHHh
Q 008014 278 FVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V-~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL--~GPPGTGKTtLAraLA~~l 354 (581)
.++|+++.++.|...+ ... .... ......+++ +||+|+|||++++.+++.+
T Consensus 23 ~l~gR~~el~~l~~~l~~~~----~~~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRL----LSGA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHH----HTSS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhHHH----hcCC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5899999999888777 411 0000 001257888 9999999999999998776
Q ss_pred ---------CCCeEEecccc
Q 008014 355 ---------NVPFVIADATT 365 (581)
Q Consensus 355 ---------~~~fv~i~~s~ 365 (581)
+..++.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 77 SEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp HHHHHHTTCCEEEEEEEGGG
T ss_pred HHHHhccCCceeEEEEECCC
Confidence 34567777643
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.54 E-value=1.4e-07 Score=120.26 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=79.6
Q ss_pred CccEEEECCCCCChHHHH-HHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhh---hhH-H---hhccCeEEe
Q 008014 330 KSNILLMGPTGSGKTLLA-KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNV-A---AAQQGIVYI 401 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLA-raLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~---~~l-~---~a~~~ILfI 401 (581)
+.++||+||||||||++| +++++..+.+++.++++..+.+. ...+.+...+.... ..+ . .....||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 469999999999999999 44555446777888887765321 11122222211110 000 0 123569999
Q ss_pred hhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCcC------hHHH
Q 008014 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD------IEKT 475 (581)
Q Consensus 402 DEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~~------Le~~ 475 (581)
||+|....++- ....+...|.++||.+.+.. .. ....+...++.+|+|+|.++ ++..
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le~gg~yd--------~~-~~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLMEKQGFWK--------TP-ENKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEEC--------TT-TCCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ccccccccccc--------CchhHHHHHHHHHhcCCEEE--------cC-CCcEEEecCEEEEEecCCCccCCCccCChh
Confidence 99997543321 11237788888888433322 11 11122336899999998762 4443
Q ss_pred HHhhhcccCCCCCChhhhh
Q 008014 476 ISERRQDSSIGFGAPVRAN 494 (581)
Q Consensus 476 l~~rrfd~~IgF~~P~~e~ 494 (581)
+.+ +| ..+.++.|+.+.
T Consensus 1406 llR-rf-~vi~i~~P~~~~ 1422 (2695)
T 4akg_A 1406 FTR-HA-AILYLGYPSGKS 1422 (2695)
T ss_dssp HHT-TE-EEEECCCCTTTH
T ss_pred hhh-ee-eEEEeCCCCHHH
Confidence 332 33 445555555443
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=3.9e-08 Score=93.26 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=31.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~ 367 (581)
.+++|+||||||||++|++++..+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999887 5677777776543
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.48 E-value=2.9e-07 Score=113.15 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=87.9
Q ss_pred HHHHhhhccccChHHHHHHHHHHHHhhHHHHhhhhhc-c-cccCCC----CCCCCCCCCCCc-ccccCc--cEEEECCCC
Q 008014 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQ-K-RSAGES----SSCTTDGVDDDT-VELEKS--NILLMGPTG 340 (581)
Q Consensus 270 ei~~~Ld~~VvGqd~ak~~L~~~V~~~~~r~~~~~~~-~-~~~~~~----~~~~~~~l~~v~-~~v~~~--~VLL~GPPG 340 (581)
+....+++ |-|.+++|+.+.+++.+..+..+..... + ...... -+.-...||.+- ..-.++ .+|++||||
T Consensus 1014 ~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1014 ASGSSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred cCCceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 33344444 7899999999999987655332211000 0 000000 000000011111 111223 388999999
Q ss_pred CChHHHHHHHHHHh---CCCeEEeccccccc-----------cccccc----hhhhHHHHHhhhhhhhHHhhccCeEEeh
Q 008014 341 SGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVAAAQQGIVYID 402 (581)
Q Consensus 341 TGKTtLAraLA~~l---~~~fv~i~~s~l~~-----------~gyvGe----~~~~~l~~lf~~a~~~l~~a~~~ILfID 402 (581)
||||++|++++.+. +.+-+.++..+..+ ..|+++ + ++.++.++..++ +..+++||+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar----~~~~~~i~~d 1167 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR----SGAVDVIVVD 1167 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----HTCCSEEEES
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----hcCCeEEEeC
Confidence 99999999998766 55655566554221 346666 4 667777766554 4679999999
Q ss_pred hhhhhhhhhhhcccCCC---CchhhHHHHHHHHHhC
Q 008014 403 EVDKITKKAESLNISRD---VSGEGVQQALLKMLEG 435 (581)
Q Consensus 403 EID~l~~~r~~~~~~~d---~~~~~vq~aLL~lLEg 435 (581)
|+|++.+.++..+...+ ...+++.+++|..|++
T Consensus 1168 ~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1168 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp CGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred chHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 99999998653221122 1224467788888875
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.42 E-value=4.6e-06 Score=84.24 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=41.3
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.++|.++..+.|...+.. .+.++++||+|+|||+|++.+++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-- 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP-- 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--
T ss_pred hcCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--
Confidence 479999999988877741 14688999999999999999998875
Q ss_pred eEEecccc
Q 008014 358 FVIADATT 365 (581)
Q Consensus 358 fv~i~~s~ 365 (581)
++.+++..
T Consensus 57 ~~~~~~~~ 64 (350)
T 2qen_A 57 GILIDCRE 64 (350)
T ss_dssp EEEEEHHH
T ss_pred cEEEEeec
Confidence 55566543
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.41 E-value=4e-07 Score=83.93 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=51.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l 407 (581)
..++|+||+|+|||+|++++++.+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~--------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DA--------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GG--------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HH--------HhCCCEEEEeCcccc
Confidence 577899999999999999999887 556777777665421 00 135689999999987
Q ss_pred hhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 408 ~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
... .+..|+++++
T Consensus 96 ~~~--------------~~~~l~~li~ 108 (149)
T 2kjq_A 96 GNE--------------EQALLFSIFN 108 (149)
T ss_dssp CSH--------------HHHHHHHHHH
T ss_pred ChH--------------HHHHHHHHHH
Confidence 654 3666777766
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=8.3e-06 Score=82.39 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
+.++++||+|+|||+|++.+++..+..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 46889999999999999999998877777777654
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.21 E-value=2.9e-07 Score=94.64 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=29.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC----CCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~----~~fv~i~~s~l 366 (581)
.+++|+||||||||+||+++|..+. .+++.+++.++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 6899999999999999999997653 66776776654
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.17 E-value=6.6e-06 Score=105.15 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=52.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.++++.||+|||||++++.+|+.+|.+++.++|++-... ..+...|..+ ...+.++++||++++.++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 478899999999999999999999999999999875431 2222333222 134689999999999887
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.04 E-value=7.9e-06 Score=80.22 Aligned_cols=77 Identities=12% Similarity=0.313 Sum_probs=50.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.++||+||||||||++|.++|+.+....+.+..+. ..+ .+.. .....|++|||+|.....
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-----------~l~~------l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-----------WLEP------LTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-----------GGGG------GTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-----------hhcc------cCCCCEEEEECCCchhHH
Confidence 46899999999999999999999865433221100 000 0011 012459999999864322
Q ss_pred hhhcccCCCCchhhHHHHHHHHHhCceeee
Q 008014 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (581)
Q Consensus 411 r~~~~~~~d~~~~~vq~aLL~lLEg~~v~i 440 (581)
.+...+..+|||..+.+
T Consensus 119 -------------~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 119 -------------YFDTYMRNALDGNPISI 135 (212)
T ss_dssp -------------HHHHHCHHHHHTCCEEE
T ss_pred -------------HHHHHHHHHhCCCcccH
Confidence 15677889999876665
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.00 E-value=8.2e-06 Score=82.84 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5799999999999999999999764
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.97 E-value=6.3e-06 Score=85.98 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=42.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC--eEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~ 408 (581)
+.++|+||||||||+||.++|...+.+ |+.....+... .+. .+.+..+..+.+.. . ..+ +|+|||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l----~-~~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAM----L-QHR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHH----H-HCS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHH----h-hCC-EEEEecccccc
Confidence 346799999999999999998765544 55552233221 121 22233333332221 1 223 99999999996
Q ss_pred hhh
Q 008014 409 KKA 411 (581)
Q Consensus 409 ~~r 411 (581)
...
T Consensus 196 ~~~ 198 (331)
T 2vhj_A 196 GAA 198 (331)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=6.9e-05 Score=70.94 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.8
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.+.|.||+|+|||||+++|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 46799999999999999999988643
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=2.5e-05 Score=100.88 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=69.1
Q ss_pred CccEEEECCCCCChHHHHHH-HHHHhCCCeEEeccccccccccccchhhhHHHHHhhh----hh----hhH-Hh---hcc
Q 008014 330 KSNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTV----SD----YNV-AA---AQQ 396 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAra-LA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~----a~----~~l-~~---a~~ 396 (581)
..+|||+||||||||.+++. +++..+.+++.+++++-+.+ ..+...++. .. +.+ .. ...
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 36899999999999977654 44444667788888876532 222222221 10 111 11 234
Q ss_pred CeEEehhhhhhhhhhhhcccCCCCchhhHHHHHHHHHhCceeeecCCCcccCCCCCceeeccCcEEEEecCCCc
Q 008014 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (581)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~d~~~~~vq~aLL~lLEg~~v~ipe~g~~~~~~~~~ivI~tsnii~I~tgn~~ 470 (581)
.|+||||++....+.- ....+...|.++||.+....+++ .-.+...++.+|+|.|.+
T Consensus 1376 ~VlFiDDiNmp~~D~y--------GtQ~~ielLrqlld~~g~yd~~~---------~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKY--------GTQRVITFIRQMVEKGGFWRTSD---------HTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp EEEEETTTTCCCCCTT--------SCCHHHHHHHHHHHHSEEEETTT---------TEEEEESSEEEEEEECCT
T ss_pred EEEEecccCCCCcccc--------ccccHHHHHHHHHHcCCeEECCC---------CeEEEecCeEEEEEcCCC
Confidence 5999999997544311 11237888999999444433211 122345788999987754
No 101
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=2e-05 Score=74.87 Aligned_cols=45 Identities=38% Similarity=0.544 Sum_probs=28.5
Q ss_pred CCCCCCCcccccCc-cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 318 TDGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 318 ~~~l~~v~~~v~~~-~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
..+++++++.+.++ .++|.|||||||||+++.|++.++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 44678899998776 5669999999999999999999998886543
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.52 E-value=0.00011 Score=71.10 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=43.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHH--------hC-CCeEEeccccccccccc-------------cchh-hhHHHHHhhhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY--------VN-VPFVIADATTLTQAGYV-------------GEDV-ESILYKLLTVS 387 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~--------l~-~~fv~i~~s~l~~~gyv-------------Ge~~-~~~l~~lf~~a 387 (581)
.-.|++|+||+|||++|..++.. .| .+++..++.++.- ++. ++.. ...+.+++.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhh--
Confidence 35679999999999999886433 23 6665566665542 222 0000 011222211
Q ss_pred hhhHHhhccCeEEehhhhhhhhh
Q 008014 388 DYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 388 ~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
.....+.||+|||++.+.+.
T Consensus 83 ---~~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 83 ---KPENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ---SGGGTTCEEEETTGGGTSBC
T ss_pred ---ccccCceEEEEEChhhhccC
Confidence 12245889999999999654
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.51 E-value=0.00015 Score=90.60 Aligned_cols=78 Identities=23% Similarity=0.245 Sum_probs=49.5
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccccc-----------hhhhHHHHHhhhhhhhHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGE-----------DVESILYKLLTVSDYNVA 392 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyvGe-----------~~~~~l~~lf~~a~~~l~ 392 (581)
..+++|+||||||||+||.+++... +...+.++..+.... ...|. ..+..++.+ +..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~----~~lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC----DALAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH----HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH----HHHHh
Confidence 4578899999999999999997665 455666666543211 11120 001222222 22334
Q ss_pred hhccCeEEehhhhhhhhhh
Q 008014 393 AAQQGIVYIDEVDKITKKA 411 (581)
Q Consensus 393 ~a~~~ILfIDEID~l~~~r 411 (581)
...+++|+|||++.+.+.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred cCCCCEEEEcChhHhcccc
Confidence 4678999999999888754
No 104
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.34 E-value=0.00016 Score=74.48 Aligned_cols=38 Identities=26% Similarity=0.577 Sum_probs=34.0
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..+|+++++.++++.++ |+||+|+|||||+++|++.+.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34789999999999887 999999999999999998773
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.34 E-value=0.00013 Score=67.76 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
..++|.|+|||||||+|+.||+.++.+++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57889999999999999999999999887543
No 106
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.33 E-value=0.00034 Score=84.93 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=39.5
Q ss_pred CCCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEecccc
Q 008014 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (581)
Q Consensus 317 ~~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~ 365 (581)
+..+|+++++.++++..+ ++||+|+||||++++|.+++... -+.+++.+
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc
Confidence 346799999999999887 99999999999999999988432 24455544
No 107
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.30 E-value=0.00093 Score=64.29 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.2
Q ss_pred cccCccEE-EECCCCCChHHHHHHHH
Q 008014 327 ELEKSNIL-LMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 327 ~v~~~~VL-L~GPPGTGKTtLAraLA 351 (581)
.++++.++ |.||+|+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45666555 99999999999999998
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.30 E-value=0.0013 Score=85.35 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=50.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhhhhhhhh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEID~l~~~ 410 (581)
+..+.||+|||||.+++.+|+.+|.+++.++|++-... ..+...|... ...+...++|||+++..+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 55799999999999999999999999999999874421 1222222211 135678899999999877
No 109
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.25 E-value=0.00016 Score=87.69 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=40.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccccc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~ 367 (581)
++|+++++.++++..+ ++|++|+|||||+++|.+.+.. --+.+++.++.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence 5899999999999877 9999999999999999988743 23556665543
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.25 E-value=0.00023 Score=65.45 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=28.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
..|+|.|+||+||||+|+.|++.++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 457899999999999999999999888876554
No 111
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0012 Score=70.97 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+++++.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998776
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00027 Score=64.17 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.|+|.|+||+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876443
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.00067 Score=64.24 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=25.7
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
++++. ++|.||||+||||+++.++..+ +...+.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 44454 4599999999999999998554 445444443
No 114
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.12 E-value=0.00084 Score=74.88 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=34.3
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++++++.++++.++ +.||+|+|||||++++++.+.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 35899999999999888 999999999999999998774
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.07 E-value=0.00033 Score=64.09 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=28.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.+++|.|++||||||+++.||+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5789999999999999999999999988754
No 116
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.0003 Score=64.93 Aligned_cols=29 Identities=41% Similarity=0.691 Sum_probs=26.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.++|.|+||+||||+|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68899999999999999999999887764
No 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.04 E-value=0.0004 Score=64.43 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3588999999999999999999999887644
No 118
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.00031 Score=65.77 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHH-hCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~-l~~~fv~i 361 (581)
..++|+|+|||||||+++.|++. ++.+++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46789999999999999999998 67766543
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.03 E-value=0.00036 Score=63.85 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=25.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..+.|.||+|+||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999999987655
No 120
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.02 E-value=0.00028 Score=68.34 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.|+++++.++++.++ |+||+|+|||||+++|+..+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478899999988766 99999999999999999977
No 121
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.02 E-value=0.00035 Score=68.54 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.+++++++.++++.++ |.||+|+||||+++.|+..++..
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4789999999988776 99999999999999999988643
No 122
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.01 E-value=0.0011 Score=73.74 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=34.2
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++++++.++++.++ ++||+|+|||||++++++.+.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35799999999999888 999999999999999998774
No 123
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00039 Score=64.37 Aligned_cols=31 Identities=42% Similarity=0.611 Sum_probs=27.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+++.|++.++.+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5788999999999999999999998776543
No 124
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.00094 Score=63.85 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46799999999999999999876
No 125
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.0002 Score=75.96 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=27.9
Q ss_pred cccccCc-cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 325 TVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 325 ~~~v~~~-~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
++.++++ .++|+||||+||||+++++++..+..++.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3444445 55699999999999999999988765543
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.94 E-value=0.00039 Score=64.62 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=28.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
.++|.||||+||||++++|++..+...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45699999999999999999987767666766543
No 127
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.94 E-value=0.00086 Score=74.70 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=38.2
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEecccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~ 365 (581)
..+++++++.++++.++ ++||+|+|||||++++++.+... -+.+++.+
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 45899999999999888 99999999999999999877432 24444443
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.00048 Score=63.90 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+++.|++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 4577999999999999999999998877654
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.0011 Score=63.67 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=26.4
Q ss_pred Ccc-EEEECCCCCChHHHHHHHHHH--h-------CCCeEEecccc
Q 008014 330 KSN-ILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (581)
Q Consensus 330 ~~~-VLL~GPPGTGKTtLAraLA~~--l-------~~~fv~i~~s~ 365 (581)
++. ++|+||||+|||++++.++.. . +...+.++..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 344 459999999999999999984 2 33456666544
No 130
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.86 E-value=0.00074 Score=63.72 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4577999999999999999999999887654
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.00069 Score=67.26 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.1
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.+++.||||+||||+|+.||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 46799999999999999999999988876654
No 132
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.86 E-value=0.00055 Score=61.58 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=25.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
-++|.||||+||||+|+.| +.++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5779999999999999999 8888877643
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.0006 Score=62.19 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=27.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|++|+||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3588999999999999999999998877643
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00085 Score=63.32 Aligned_cols=31 Identities=32% Similarity=0.643 Sum_probs=27.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|++|+||||+|+.|++.++..++..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4688999999999999999999998776643
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.00055 Score=64.70 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=28.1
Q ss_pred cCcc-EEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 329 EKSN-ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 329 ~~~~-VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
+++. ++|.||||+|||++++.++...+.+.+.++..+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3444 459999999999999999985566666666544
No 136
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00022 Score=71.43 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=27.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..+.|.|++|+||||+++.||+.++.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5677999999999999999999999887654
No 137
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.80 E-value=0.00065 Score=63.13 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4677999999999999999999998776544
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00065 Score=62.74 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
..|+|.|+||+||||+|+.|++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 457899999999999999999999876653
No 139
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.78 E-value=0.00065 Score=70.40 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=41.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC--CeEEeccccccc-------cccc---cchhhhHHHHHhhhhhhhHHhhccCe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ-------AGYV---GEDVESILYKLLTVSDYNVAAAQQGI 398 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~l~~-------~gyv---Ge~~~~~l~~lf~~a~~~l~~a~~~I 398 (581)
..+++.||+|+||||++++|+..+.. ..+.++...... .+++ |+. .+..+..+ ....|.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~----~r~~la~a----L~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNIT----SADCLKSC----LRMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBC----HHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChh----HHHHHHHH----hhhCCCE
Confidence 46779999999999999999988742 344454432110 1133 222 22222221 1247899
Q ss_pred EEehhhhh
Q 008014 399 VYIDEVDK 406 (581)
Q Consensus 399 LfIDEID~ 406 (581)
|++||+..
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 140
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.77 E-value=0.0028 Score=66.27 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=46.3
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccc---cccchhh-------hHHHHHhhhhhhhHHh
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLTVSDYNVAA 393 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~g---yvGe~~~-------~~l~~lf~~a~~~l~~ 393 (581)
++++. ++++||||+|||+||..++..+ +...+.++...-.... ..|.+.. ..+.+.+...+..+..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 33454 5599999999999999998554 5566666654421100 0111100 0111222222222223
Q ss_pred hccCeEEehhhhhhhh
Q 008014 394 AQQGIVYIDEVDKITK 409 (581)
Q Consensus 394 a~~~ILfIDEID~l~~ 409 (581)
..+.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 4588999999999974
No 141
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.77 E-value=0.00086 Score=60.95 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=26.7
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.|+|.|++|+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999887643
No 142
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.77 E-value=0.0019 Score=70.72 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=36.1
Q ss_pred CCCCCCCcc-cccCccEE-EECCCCCChHHHHHH--HHHHh--CCCeEEecccc
Q 008014 318 TDGVDDDTV-ELEKSNIL-LMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~-~v~~~~VL-L~GPPGTGKTtLAra--LA~~l--~~~fv~i~~s~ 365 (581)
..+|+++++ .++++.++ |.||+|+|||||+++ ++... +..-+.++..+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 357888999 88888766 999999999999999 45544 34455565544
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0043 Score=61.10 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 345589999999999998887655 4455545
No 144
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.75 E-value=0.00084 Score=63.95 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998777644
No 145
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.74 E-value=0.00032 Score=69.21 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+....
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4789999999999888 999999999999999998763
No 146
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.73 E-value=0.00091 Score=63.58 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.3
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.|+|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877644
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.00067 Score=62.73 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..++|.|+||+||||+++.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 35779999999999999999999887664
No 148
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.73 E-value=0.0023 Score=60.71 Aligned_cols=26 Identities=54% Similarity=0.644 Sum_probs=21.6
Q ss_pred cCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 329 EKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 329 ~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++.++ |.||+|+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555 99999999999999999854
No 149
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.70 E-value=0.0009 Score=64.12 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4678999999999999999999998776543
No 150
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.70 E-value=0.00044 Score=64.38 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++.++++.++ |.||.|+|||||+|+|++.+
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445666667666 99999999999999999987
No 151
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.69 E-value=0.001 Score=61.10 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=24.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..++|.||+|+||||+++.|++.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 35679999999999999999998876554
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.00069 Score=62.47 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999886
No 153
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.68 E-value=0.00087 Score=61.67 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=22.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..|+|.|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999998876
No 154
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.67 E-value=0.0033 Score=64.37 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=49.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CC-Ce--EEeccccccccccccchhhhHHHHHhhhhhhhHHhhccCeEEehhh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PF--VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~-~f--v~i~~s~l~~~gyvGe~~~~~l~~lf~~a~~~l~~a~~~ILfIDEI 404 (581)
..+||+||.|.||++.++.+++.+ +. ++ +.++. ..+ ++++.+.+...-......|++|||+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~----~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTD----WNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCC----HHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCC----HHHHHHHhcCcCCccCCeEEEEECC
Confidence 567899999999999999998765 21 21 12211 012 2223222221111245679999999
Q ss_pred hh-hhhhhhhcccCCCCchhhHHHHHHHHHh
Q 008014 405 DK-ITKKAESLNISRDVSGEGVQQALLKMLE 434 (581)
Q Consensus 405 D~-l~~~r~~~~~~~d~~~~~vq~aLL~lLE 434 (581)
+. +..+ .+++|++.++
T Consensus 86 ~~kl~~~--------------~~~aLl~~le 102 (343)
T 1jr3_D 86 ENGPNAA--------------INEQLLTLTG 102 (343)
T ss_dssp SSCCCTT--------------HHHHHHHHHT
T ss_pred CCCCChH--------------HHHHHHHHHh
Confidence 98 7655 7999999999
No 155
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.66 E-value=0.00091 Score=62.28 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.-|+|.|+||+||||+|+.|++.++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 457799999999999999999999866653
No 156
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.64 E-value=0.00048 Score=68.02 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5789999999999888 99999999999999999765
No 157
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.64 E-value=0.003 Score=70.35 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=24.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
+.+++.|+||||||+++++++..+ +.+++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 678899999999999999998765 4454433
No 158
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.63 E-value=0.00094 Score=61.56 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3577999999999999999999998766544
No 159
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.63 E-value=0.0011 Score=64.42 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5688999999999999999999998776543
No 160
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.63 E-value=0.0042 Score=65.34 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=47.0
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccc------cccccchh----hhHHHHHhhhhhhhHHh
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ------AGYVGEDV----ESILYKLLTVSDYNVAA 393 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~------~gyvGe~~----~~~l~~lf~~a~~~l~~ 393 (581)
++++. ++|+||||+|||||+..++..+ +...+.++..+... .++..+.. ...+.+.+...+..+..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 33444 4599999999999999998765 55666676654221 01000000 00111222222222233
Q ss_pred hccCeEEehhhhhhhh
Q 008014 394 AQQGIVYIDEVDKITK 409 (581)
Q Consensus 394 a~~~ILfIDEID~l~~ 409 (581)
..+.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 5678999999998875
No 161
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.61 E-value=0.00044 Score=69.34 Aligned_cols=37 Identities=14% Similarity=0.407 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+.
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999887 999999999999999998763
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.60 E-value=0.0013 Score=62.21 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=24.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..++|.||+|+||||++++|++.+|..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 35669999999999999999999865443
No 163
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.60 E-value=0.00049 Score=68.74 Aligned_cols=36 Identities=25% Similarity=0.666 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+...
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999876
No 164
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.60 E-value=0.0005 Score=67.25 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.++++++++++++.++ |.||+|+|||||.++|+....
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999887 999999999999999998763
No 165
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.60 E-value=0.00044 Score=70.11 Aligned_cols=36 Identities=14% Similarity=0.413 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3789999999999887 99999999999999999876
No 166
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.60 E-value=0.00069 Score=61.86 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.8
Q ss_pred ccEEEECCCCCChHHHHHHHHH-HhCCCe
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR-YVNVPF 358 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~-~l~~~f 358 (581)
.-++|.|+||+||||+|+.|++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3578999999999999999998 454433
No 167
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.59 E-value=0.0026 Score=60.28 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=17.8
Q ss_pred cEEEECCCCCChHHHHHHHHHH
Q 008014 332 NILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-++++||+|+||||++..++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999666544
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.59 E-value=0.0009 Score=62.16 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.8
Q ss_pred CcccccCccEE-EECCCCCChHHHHHHH
Q 008014 324 DTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (581)
Q Consensus 324 v~~~v~~~~VL-L~GPPGTGKTtLAraL 350 (581)
+++.++++.++ |.||+|+|||||++++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 56777778776 9999999999999963
No 169
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.57 E-value=0.002 Score=78.00 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=38.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC--eEEecccc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~--fv~i~~s~ 365 (581)
.+|+++++.++++.++ |+||+|+|||||+++|++.+... -+.+++.+
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5899999999999888 99999999999999999887432 24455443
No 170
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.56 E-value=0.00057 Score=67.07 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999888 99999999999999999876
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.56 E-value=0.00095 Score=64.04 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=25.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..|+|.|+||+||||+++.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999987554
No 172
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.55 E-value=0.0006 Score=67.46 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 16 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999876
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.55 E-value=0.0011 Score=63.90 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=26.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4678999999999999999999998766543
No 174
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0032 Score=64.55 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+.+++.+.++.++ |.||+|+||||+++.||..+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666665 99999999999999999876
No 175
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.54 E-value=0.0042 Score=61.57 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=28.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHH---hCCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~---l~~~fv~i~~s~l 366 (581)
.-|+|.|+||+||||+|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 35779999999999999999987 6777765555443
No 176
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.53 E-value=0.0015 Score=64.53 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=30.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l~ 367 (581)
..++|.|+||+||||+|+.|++.++..++.++...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 4677999999999999999999997666667765553
No 177
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.53 E-value=0.00063 Score=70.16 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=30.7
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.++++.++ |+||+|+|||||+++|++.+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456677888888777 99999999999999999988
No 178
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.53 E-value=0.00072 Score=71.29 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|||||||.|+|+...
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4789999999999888 99999999999999999876
No 179
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.52 E-value=0.00065 Score=68.39 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999888 99999999999999999766
No 180
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.52 E-value=0.00065 Score=68.51 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998763
No 181
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0013 Score=61.91 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|++|+||||+++.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3577999999999999999999998766544
No 182
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.52 E-value=0.0049 Score=74.71 Aligned_cols=37 Identities=27% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.++++.++ |+||+|+|||||+++|++.+.
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5899999999999888 999999999999999998763
No 183
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.51 E-value=0.00055 Score=67.65 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999877 99999999999999999876
No 184
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.51 E-value=0.0013 Score=63.09 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4678999999999999999999998777644
No 185
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.51 E-value=0.0014 Score=61.32 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-+.|.||+|+||||++++|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 34499999999999999999986
No 186
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0015 Score=62.39 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998777644
No 187
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.49 E-value=0.00071 Score=67.78 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4799999999999877 99999999999999999876
No 188
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.48 E-value=0.0006 Score=68.62 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3689999999999887 999999999999999998763
No 189
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.48 E-value=0.00086 Score=66.64 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~ 353 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999887 9999999999999999986
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0018 Score=61.80 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35779999999999999999999887664
No 191
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.47 E-value=0.00061 Score=67.77 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.++++.++ |.||+|+|||||+++|+..+.
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998763
No 192
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.46 E-value=0.00089 Score=71.13 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|||||||.|+|+...
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4789999999999888 99999999999999999876
No 193
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.46 E-value=0.00095 Score=64.53 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=20.2
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHH-HHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA-RYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA-~~l 354 (581)
..+++++.++++.++ |.||+|+||||++++|+ ..+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456778888888776 99999999999999999 875
No 194
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.44 E-value=0.00096 Score=67.06 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999887 99999999999999999863
No 195
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.44 E-value=0.001 Score=69.90 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|||||||.|+|+...
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999876
No 196
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.44 E-value=0.0017 Score=60.47 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.|+|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3679999999999999999999987665
No 197
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0024 Score=59.00 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEec
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~ 362 (581)
++|.|++|+||||+++.|++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999988 88877654
No 198
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.43 E-value=0.00075 Score=67.34 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4688999999999877 99999999999999999876
No 199
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0016 Score=64.13 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..|+|.||||+||||+|+.|++.++.+++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4688999999999999999999988766543
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.42 E-value=0.0025 Score=58.92 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l 366 (581)
..++|.|++|+||||+++.|+..+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 356699999999999999999987 888887775443
No 201
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.00089 Score=71.28 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.++++.++ |.||+|||||||.++|+...
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45799999999999888 99999999999999999765
No 202
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.39 E-value=0.00062 Score=66.49 Aligned_cols=37 Identities=38% Similarity=0.657 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+....
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999998777 999999999999999998763
No 203
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.39 E-value=0.00071 Score=68.64 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999877 99999999999999999876
No 204
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.38 E-value=0.00077 Score=67.68 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999887 99999999999999999766
No 205
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.36 E-value=0.0026 Score=66.38 Aligned_cols=41 Identities=37% Similarity=0.423 Sum_probs=31.2
Q ss_pred cccccCccEE-EECCCCCChHHHHHHHHHHhC---------CCeEEecccc
Q 008014 325 TVELEKSNIL-LMGPTGSGKTLLAKTLARYVN---------VPFVIADATT 365 (581)
Q Consensus 325 ~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~---------~~fv~i~~s~ 365 (581)
...++++.++ |+||||+|||||++.++..+. ...+.++..+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4567777766 999999999999999998762 3446666644
No 206
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.36 E-value=0.0024 Score=64.74 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=28.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
.-++|.||||+||||+|+.|++.++..++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 457799999999999999999988555666765333
No 207
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.35 E-value=0.001 Score=66.69 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999876
No 208
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.33 E-value=0.0023 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=26.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~l 366 (581)
.++|.||||+||+|.|+.||+.++.+.+ +..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 3679999999999999999999987654 44443
No 209
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.33 E-value=0.0012 Score=69.51 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.++++++++++++.++ |.||+|||||||.|+|+...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3688999999999887 99999999999999999876
No 210
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0012 Score=69.60 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.++++++++++++.++ |.||+|||||||.|+|+...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999887 99999999999999999876
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0047 Score=59.18 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=25.6
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
++++. +++.||||+|||+++..++... +.+.+.++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34454 4599999999999998886443 4555555543
No 212
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.31 E-value=0.00082 Score=67.10 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999877 99999999999999999876
No 213
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.30 E-value=0.0024 Score=60.40 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=26.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l 366 (581)
-+.|.||+|+||||++++|++.+ |...+.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45599999999999999999988 444334555443
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.29 E-value=0.0019 Score=60.85 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.|.|.|++|+||||+++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 477999999999999999999 87766544
No 215
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.29 E-value=0.0057 Score=64.15 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+.+++.||+|+||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 567799999999999999998776
No 216
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.28 E-value=0.0013 Score=69.59 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|||||||.|+||...
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3688999999999887 99999999999999999876
No 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.28 E-value=0.0031 Score=58.48 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.0
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
|.|.|++||||||+++.|++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 6799999999999999999998 8887654
No 218
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.27 E-value=0.0013 Score=69.52 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|||||||.|+|+...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4688999999999887 99999999999999999876
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.26 E-value=0.013 Score=63.13 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=26.4
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
+.-++++||+|+||||++..||..+ +..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4566799999999999999999766 555554554
No 220
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.26 E-value=0.0015 Score=60.16 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.|+|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.25 E-value=0.0022 Score=61.95 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.1
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.++|.|+||+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999865543
No 222
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.25 E-value=0.0024 Score=60.83 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.1
Q ss_pred cccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 327 ~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45666666 999999999999999999874
No 223
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.24 E-value=0.0028 Score=59.33 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.+.|.|++|+||||+++.|++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 567999999999999999999999887643
No 224
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.24 E-value=0.0013 Score=65.27 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=30.3
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++++++.+++ .++ |.||+|+|||||.++|+...
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999 777 99999999999999999876
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.23 E-value=0.0023 Score=60.41 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=24.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.+.|.|++|+||||+++.|++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 467999999999999999998 7877753
No 226
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.22 E-value=0.0015 Score=69.07 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.|+|+...
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4799999999999888 99999999999999999876
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.21 E-value=0.017 Score=62.55 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=27.3
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
+..++++|++|+||||++..||..+ +.....+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4567799999999999999999776 5555555553
No 228
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.20 E-value=0.0025 Score=59.39 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
..|.|.|++|+||||+++.|++. +.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 45779999999999999999998 777654
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.17 E-value=0.003 Score=66.57 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=26.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.+++|+|++|+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468899999999999999999999887754
No 230
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.17 E-value=0.0012 Score=69.34 Aligned_cols=35 Identities=31% Similarity=0.686 Sum_probs=32.5
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.++++.++ |.||+|||||||.|+||...
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 689999999999887 99999999999999999876
No 231
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.16 E-value=0.0012 Score=67.28 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.++++.++ |.||+|+|||||.++|+..+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999776
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.16 E-value=0.0026 Score=59.57 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-+.|.||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999876
No 233
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.15 E-value=0.0028 Score=62.08 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=26.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
+-|+|.||||+||+|.|+.|++.++.+. ++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGd 62 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGD 62 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHH
Confidence 3456899999999999999999997655 44444
No 234
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.15 E-value=0.0039 Score=60.87 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=25.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..+.|.||+|+||||++++|++.++....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 46779999999999999999998876543
No 235
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.14 E-value=0.0029 Score=59.15 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-CCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-~~~fv~i~ 362 (581)
..|+|.|++|+||||+++.|++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 457799999999999999999988 46666543
No 236
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.14 E-value=0.0027 Score=65.97 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=29.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s 364 (581)
..++|+||+|+|||++|+.||+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4678999999999999999999998888777543
No 237
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.13 E-value=0.0081 Score=58.84 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s 364 (581)
..+++.||+|+|||.+|.+++...+.+.+.+..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887666655544
No 238
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.12 E-value=0.001 Score=69.81 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.++++.++ |.||+|||||||.|+||...
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 688999999999887 99999999999999999876
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.08 E-value=0.016 Score=60.86 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=46.7
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccc---cccchhh-------hHHHHHhhhhhhhHHh
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLTVSDYNVAA 393 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~g---yvGe~~~-------~~l~~lf~~a~~~l~~ 393 (581)
++++. ++++|+||+|||++|..++..+ +.+.+.++...-.... -.|.+.. .....+....+..+..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 34444 5599999999999999998654 5667777764321100 0011000 0011111112212223
Q ss_pred hccCeEEehhhhhhhh
Q 008014 394 AQQGIVYIDEVDKITK 409 (581)
Q Consensus 394 a~~~ILfIDEID~l~~ 409 (581)
....+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 5678999999999875
No 240
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.06 E-value=0.0046 Score=72.53 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHH
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~ 353 (581)
..+++++++.+.++.++ |.||+|+||||+.|+++..
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45788999998877665 9999999999999999743
No 241
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.03 E-value=0.0022 Score=60.31 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..|+|.|++|+||||+++.|++.++.+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 45779999999999999999998765443
No 242
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0087 Score=62.98 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=26.3
Q ss_pred CCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 323 DDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 323 ~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++.+.++.++ |+||+|+||||+++.||..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456666666555 99999999999999999876
No 243
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.00 E-value=0.0038 Score=58.43 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.-|+|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 357799999999999999999988763
No 244
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.00 E-value=0.0023 Score=64.21 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=35.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh----CCCeEEecc
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l----~~~fv~i~~ 363 (581)
.+|+++...++++.++ |.||||+||||+++.++..+ |.+++.++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4688888888888777 99999999999999998765 335544443
No 245
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.99 E-value=0.0066 Score=66.60 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=28.2
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+++++.+.++.++ |+||+|+||||+++.|+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 5677777777666 99999999999999999876
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.98 E-value=0.0095 Score=61.08 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=27.3
Q ss_pred cCcc-EEEECCCCCChHHHHHHHHHHh---------CCCeEEecccc
Q 008014 329 EKSN-ILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (581)
Q Consensus 329 ~~~~-VLL~GPPGTGKTtLAraLA~~l---------~~~fv~i~~s~ 365 (581)
+++. ++++||||+|||++|..++..+ +...+.++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3444 5599999999999999998764 34556666654
No 247
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.89 E-value=0.0028 Score=59.68 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
..|+|.|++|+||||+++.|++.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 457799999999999999999887543
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.87 E-value=0.0048 Score=57.47 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.-+.|.||+|+|||||+++|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566999999999999999998763
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.85 E-value=0.0055 Score=60.76 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=25.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 45779999999999999999999987664
No 250
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.84 E-value=0.0038 Score=59.01 Aligned_cols=28 Identities=43% Similarity=0.509 Sum_probs=23.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHh-CCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l-~~~fv 359 (581)
-+.+.|++|+||||+++.|++.+ +..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 45599999999999999999977 44443
No 251
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.81 E-value=0.0049 Score=58.97 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.7
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
.|.|+|++||||||+++.+++.+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 455999999999999999999888777643
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.80 E-value=0.0052 Score=58.23 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..++|.||||+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4677999999999999999999874
No 253
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.80 E-value=0.0025 Score=64.03 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=31.3
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+. +.++ |.||+|+|||||.++|+...
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 36889999999 8666 99999999999999999876
No 254
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.79 E-value=0.0061 Score=60.18 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=24.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.+.|.||+|+||||+++.|++.++..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4559999999999999999999987654
No 255
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.76 E-value=0.03 Score=70.41 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=49.5
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccc---cccchh----------hhHHHHHhhhhhhhHH
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDV----------ESILYKLLTVSDYNVA 392 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~g---yvGe~~----------~~~l~~lf~~a~~~l~ 392 (581)
+...++++||||||||++|.+++... |.+.+.++..+..+.- ..|-+. ......+. +....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~---~~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC---DALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH---HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHH---HHHHH
Confidence 44567799999999999999997544 6777777777643211 111100 00011111 11122
Q ss_pred hhccCeEEehhhhhhhhhhh
Q 008014 393 AAQQGIVYIDEVDKITKKAE 412 (581)
Q Consensus 393 ~a~~~ILfIDEID~l~~~r~ 412 (581)
...+.+|+|||+..+.+.++
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hCCCCEEEECCccccccccc
Confidence 35689999999999966544
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.0055 Score=58.35 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
-+.|.||+|+|||||+++|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 444999999999999999999874
No 257
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.73 E-value=0.0038 Score=65.29 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.3
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEeccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s 364 (581)
.++|.||+|+|||+|+..||+.++..++..|.-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 567999999999999999999998777665553
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.71 E-value=0.0053 Score=58.51 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
-|.|.|++|+||||+++.|++ ++.+++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 567999999999999999998 77766543
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.71 E-value=0.023 Score=58.38 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=24.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
-++++||+|+||||++..||..+ +..+..+++
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 45599999999999999999776 444444443
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.69 E-value=0.0094 Score=62.10 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=44.5
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh-----CCCeEEecccc-ccc--cccccchhh-------hHHHHH-hhhhhhh--H
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT-LTQ--AGYVGEDVE-------SILYKL-LTVSDYN--V 391 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l-----~~~fv~i~~s~-l~~--~gyvGe~~~-------~~l~~l-f~~a~~~--l 391 (581)
++-++++||||+|||+|+-.++..+ +...+.++..+ +.+ ..-.|.+.. ....+. +...+.. +
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 3556799999999999987775433 45566777654 211 000111100 001111 1111111 2
Q ss_pred HhhccCeEEehhhhhhhh
Q 008014 392 AAAQQGIVYIDEVDKITK 409 (581)
Q Consensus 392 ~~a~~~ILfIDEID~l~~ 409 (581)
....+.+|+||-|..+.+
T Consensus 108 ~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp CTTCCEEEEEECSTTCBC
T ss_pred hccCceEEEEeccccccc
Confidence 335688999999999974
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.68 E-value=0.004 Score=62.39 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+++.||+|+||||+++++++.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 345699999999999999999876
No 262
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.67 E-value=0.0065 Score=57.71 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=26.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i 361 (581)
..+.|.|++|+||||+++.|++.++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4578999999999999999999998777543
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.66 E-value=0.0057 Score=56.86 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=24.3
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s~ 365 (581)
-++|.||+|+||||+++.|++..+. .+.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4679999999999999999986543 23344433
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.65 E-value=0.0053 Score=58.01 Aligned_cols=24 Identities=50% Similarity=0.565 Sum_probs=21.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
-+.|.||+|+||||+++.|++.++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 355999999999999999999886
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.63 E-value=0.0067 Score=55.92 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=28.3
Q ss_pred CCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 322 ~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+++++.+.++-.+|+||+|+|||+++++|+-.++
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556777777667999999999999999998775
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.63 E-value=0.0067 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.-+.|.||+|+||||++++|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999998763
No 267
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.60 E-value=0.048 Score=52.76 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=26.2
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
.++.|++++++|.||||+|-.+|-.+ |..+..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34788899999999999999997544 6666555
No 268
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.60 E-value=0.023 Score=58.63 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
.++++...++.++ ++|++|+||||++..||..+ +..+..+++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456655555555 99999999999999999766 455554443
No 269
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.59 E-value=0.0077 Score=70.76 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=28.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~ 352 (581)
.+++++++.+.++.++ |+||+|+||||+.|+++.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677888988876555 999999999999999953
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.59 E-value=0.0069 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..+.|+||+|+|||||++.|++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677999999999999999998764
No 271
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.59 E-value=0.022 Score=60.67 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=20.1
Q ss_pred ccCccEE-EECCCCCChHHHHHHHHH
Q 008014 328 LEKSNIL-LMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 328 v~~~~VL-L~GPPGTGKTtLAraLA~ 352 (581)
++++.++ |+||||+|||||++.++-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4455555 999999999999997763
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.56 E-value=0.0077 Score=55.89 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=25.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
..++|.|++|+||||+++.|+..+ +.++..++.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 456699999999999999999887 344544544
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.55 E-value=0.019 Score=59.53 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=27.6
Q ss_pred ccCccE-EEECCCCCChHHHHHHHHHHh---------CCCeEEecccc
Q 008014 328 LEKSNI-LLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (581)
Q Consensus 328 v~~~~V-LL~GPPGTGKTtLAraLA~~l---------~~~fv~i~~s~ 365 (581)
++++.+ +|+||||+|||++|..+|... +...+.++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 344555 599999999999999998763 34555666544
No 274
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.52 E-value=0.027 Score=53.27 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=23.8
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
-+.+.|++|+||||+++.|+..+ +.+++..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 35599999999999999999876 4555444
No 275
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.52 E-value=0.0055 Score=67.96 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=37.9
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhCC--CeEEecccc
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~--~fv~i~~s~ 365 (581)
..++++++++++++.++ +.||+|+|||||++++++.+.. --+.+++.+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 35799999999999777 9999999999999999987732 134445433
No 276
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.51 E-value=0.0081 Score=58.31 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
..+.|.|++|+||||+++.|++.++.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 456799999999999999999999877653
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.50 E-value=0.0068 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
.-+.|.||+|+||||+++.|++.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34569999999999999999988743
No 278
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.50 E-value=0.015 Score=61.26 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=46.0
Q ss_pred cCc-cEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccccccc---cccchhh-------hHHHHHhhhhhhhHHhh
Q 008014 329 EKS-NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLTVSDYNVAAA 394 (581)
Q Consensus 329 ~~~-~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~g---yvGe~~~-------~~l~~lf~~a~~~l~~a 394 (581)
+++ -++|+||||+|||++|..++..+ +.+.+.++...-...- ..|.+.. ....+++...+..+...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344 45599999999999999887654 5666667665421100 0111100 01112222222222234
Q ss_pred ccCeEEehhhhhhhh
Q 008014 395 QQGIVYIDEVDKITK 409 (581)
Q Consensus 395 ~~~ILfIDEID~l~~ 409 (581)
...+|+||.+..+..
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 678999999999874
No 279
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.49 E-value=0.018 Score=64.45 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+.+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 678899999999999988776544
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.41 E-value=0.0058 Score=61.10 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-CCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-~~~fv 359 (581)
.-++|.|+||+||||+|+.|++.+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 357899999999999999999864 54444
No 281
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.41 E-value=0.0087 Score=58.75 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCe
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~f 358 (581)
.|.|.|++|+||||+|+.|++.++.++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 466999999999999999999988763
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.35 E-value=0.024 Score=70.20 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=49.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecccccccc---ccccchh-------hhHHHHHhhhhhhhHHhhccC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV-------ESILYKLLTVSDYNVAAAQQG 397 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l~~~---gyvGe~~-------~~~l~~lf~~a~~~l~~a~~~ 397 (581)
..++|+||||+|||+||..+|..+ +.+++.++..+.... ...|.+. ...+.++++..+..+....+.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 456699999999999999998655 456777776653310 0111100 112233333333333446789
Q ss_pred eEEehhhhhhhh
Q 008014 398 IVYIDEVDKITK 409 (581)
Q Consensus 398 ILfIDEID~l~~ 409 (581)
+|+||++..+.+
T Consensus 813 lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 813 VIVVDSVAALTP 824 (1706)
T ss_dssp EEEESCSTTCCC
T ss_pred EEEEechhhhcc
Confidence 999999999984
No 283
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.25 E-value=0.0091 Score=61.86 Aligned_cols=33 Identities=45% Similarity=0.679 Sum_probs=27.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.-+++.||+|+|||+||..||+.++..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 356799999999999999999998876665544
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.23 E-value=0.012 Score=56.19 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCe
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~f 358 (581)
+.|+|+||+|+|||||++.|.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999987764333
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.23 E-value=0.011 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.1
Q ss_pred cCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 329 EKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 329 ~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
+++.++ |.||+|+|||||.++|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345455 999999999999999998764
No 286
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.22 E-value=0.012 Score=55.87 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=27.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC----CCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~----~~fv~i~~s~ 365 (581)
..++|.|++|+||||+++.|++.++ .+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3566999999999999999998764 4566666443
No 287
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.19 E-value=0.0051 Score=68.24 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
..++++++++++++.++ +.||+|+|||||++++++.+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 35799999999999777 999999999999999998774
No 288
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.01 Score=62.05 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=26.1
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
-|++.||+|+|||++|+.||+.++..++..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5679999999999999999999986555444
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.026 Score=58.50 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-+.|.||+|+||||+++.||..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 44499999999999999999876
No 290
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.11 E-value=0.0092 Score=58.23 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCCCcccccCccEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 321 l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
+.+.-+.+....++|.||+|+|||+||..|++... +++..+.
T Consensus 25 lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 25 MHGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp EESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred eeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 34445556677899999999999999999998765 5544443
No 291
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.08 E-value=0.013 Score=57.15 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
-++|.|++|+||||+++.|++.++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 455999999999999999999886
No 292
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.08 E-value=0.014 Score=55.94 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=26.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
-|.|.|++|||||++++.||+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 46699999999999999999999999873
No 293
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.07 E-value=0.018 Score=66.66 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCCCCCcccccCcc-EEEECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~-VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++. +++. ++|+||+|+||||+.|+++...
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3577888888 5554 4599999999999999998653
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.06 E-value=0.01 Score=61.55 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=26.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.-+++.||+|+|||+||..||+.++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 34679999999999999999998876555444
No 295
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.04 E-value=0.0045 Score=63.14 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEECCCCCChHHHHHHHHHHhC
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+.|.||+|+||||++++|+..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 44999999999999999999875
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.98 E-value=0.016 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.5
Q ss_pred cCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 329 EKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 329 ~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.++.++ |.||+|+|||||+++|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 335455 999999999999999998873
No 297
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.97 E-value=0.011 Score=64.77 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++.+++ .++ |.||+|+|||||.++|+..+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4578899999998 666 99999999999999999877
No 298
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.92 E-value=0.0049 Score=68.58 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.++++++++++++.++ +.||+|+|||||++++++.+.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4789999999999777 999999999999999998773
No 299
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.90 E-value=0.01 Score=62.03 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=25.6
Q ss_pred ccccCccEE-EECCCCCChHHHHHHHHHHhCCC
Q 008014 326 VELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 326 ~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+.+.++.++ |.||+|+|||||.++|++.....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344556555 99999999999999999988544
No 300
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.88 E-value=0.012 Score=59.18 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
.|.|.|++|+||||+|+.|+ .+|.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 46799999999999999999 46766543
No 301
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.87 E-value=0.0097 Score=63.34 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.-|+|+|+||+||||+|+.|++.++..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 45669999999999999999998876554
No 302
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.85 E-value=0.011 Score=63.63 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHhCCC
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~~~ 357 (581)
+++ +.+.++.++ |.||+|||||||+++|++.....
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 444 455566565 99999999999999999988544
No 303
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.76 E-value=0.0097 Score=61.68 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++++++.+.++.++ |.||||+|||||.++++..+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45566667777666 99999999999999999765
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.75 E-value=0.018 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.-++|.||+|+|||||+++|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566999999999999999998764
No 305
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.66 E-value=0.0081 Score=56.51 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEECCCCCChHHHHHHHHHHhC
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
|.|.|++|+||||+++.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999884
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.65 E-value=0.017 Score=60.08 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=25.9
Q ss_pred CcccccC--c-cEEEECCCCCChHHHHHHHHHHhCC
Q 008014 324 DTVELEK--S-NILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 324 v~~~v~~--~-~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
++..+.+ + .+.|+||+|+|||||+++|++.+..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444 3 5569999999999999999998754
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.64 E-value=0.015 Score=62.19 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=26.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~ 362 (581)
.-+++.||+|+|||+||..||+.++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45679999999999999999999876665543
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.58 E-value=0.0048 Score=64.52 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=22.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++.||+|+||||++++|++.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4667999999999999999998874
No 309
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.56 E-value=0.034 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.0
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHH
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~ 353 (581)
++++. ++++||||+|||++|..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34454 459999999999999999865
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.55 E-value=0.13 Score=56.44 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=26.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
..|+++|++|+||||++..||..+ +.....+++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 567799999999999999999766 566655555
No 311
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.54 E-value=0.013 Score=64.57 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++++++ .+.++.++ |.||+|+|||||+++|+..+
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567788 77888777 99999999999999999765
No 312
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.54 E-value=0.031 Score=52.10 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999877654
No 313
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.43 E-value=0.047 Score=64.80 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCCCCCCcccccC--------ccEEEECCCCCChHHHHHHHH
Q 008014 318 TDGVDDDTVELEK--------SNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 318 ~~~l~~v~~~v~~--------~~VLL~GPPGTGKTtLAraLA 351 (581)
..+++++++.+.+ .-++|+||+|+||||+.|+++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHH
Confidence 3577888888765 345599999999999999994
No 314
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.40 E-value=0.02 Score=53.11 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=20.7
Q ss_pred CCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 320 ~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+++++++..+...|++.|++|+|||+|.+.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345556666667899999999999999999986
No 315
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.29 E-value=0.025 Score=65.11 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+++++++. ..-++|+||+|+||||+.|+++...
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4567788887 4556699999999999999998653
No 316
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.26 E-value=0.11 Score=49.58 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHh---CCCeEEec
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~ 362 (581)
-.+++||.|+||||.+..++..+ +...+.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34589999999999988887655 55555443
No 317
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.23 E-value=0.027 Score=55.18 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=26.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~ 360 (581)
-|.+.|++|||||++|+.||+.++.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 45599999999999999999999998864
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.21 E-value=0.018 Score=55.65 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.6
Q ss_pred cEEEECCCCCChHHHHHHHHHH
Q 008014 332 NILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-+.|.||+|+|||||+++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4459999999999999999976
No 319
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.20 E-value=0.053 Score=59.53 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=22.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
.-|+|+|.||+||||+|+.|++.++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45679999999999999999998843
No 320
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.11 E-value=0.035 Score=62.55 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s~l 366 (581)
..|+|.|.+|+||||+|++|++.+ +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 457799999999999999999998 889888865443
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.09 E-value=0.078 Score=56.99 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCcccccCccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 323 ~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
++++. ++..+++.|++|+||||++..||..+ +..+..+++
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 44555 44556699999999999999999777 445554444
No 322
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.05 E-value=0.058 Score=54.97 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=29.2
Q ss_pred CcccccCccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 324 v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
+++...+.-+++.|++|+||||++..+|..+ +.....+++
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4455454456699999999999999999776 555555554
No 323
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.97 E-value=0.031 Score=55.32 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=24.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeE
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv 359 (581)
.+-|.|+||+||||+|+.|++.++.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 3559999999999999999999988775
No 324
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.93 E-value=0.018 Score=64.90 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=29.6
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA 351 (581)
.+++++++.++++.++ |.||+|+|||||++++.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4799999999999888 99999999999997653
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.89 E-value=0.075 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
-|.+.|++|+||||+|+.|++.++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 345999999999999999998874
No 326
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.85 E-value=0.024 Score=63.86 Aligned_cols=30 Identities=33% Similarity=0.595 Sum_probs=27.5
Q ss_pred CCCCCCCcccccCccEE-EECCCCCChHHHH
Q 008014 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLA 347 (581)
Q Consensus 318 ~~~l~~v~~~v~~~~VL-L~GPPGTGKTtLA 347 (581)
..++++++++++++.++ |.||+|+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 35799999999999887 9999999999997
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.85 E-value=0.035 Score=56.88 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-+.|+||+|+||||+++.||..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 355599999999999999999877
No 328
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.78 E-value=0.029 Score=61.17 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..++|+|++|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 567899999999999999987554
No 329
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.018 Score=62.51 Aligned_cols=23 Identities=35% Similarity=0.715 Sum_probs=20.5
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-+.|.||+|+|||||+|+|+...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 45699999999999999999765
No 330
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.70 E-value=0.034 Score=58.40 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+.++++||+|+||||+++++++.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457799999999999999999876
No 331
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.66 E-value=0.022 Score=63.86 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.1
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++++++ .+.++.++ |.||+|+|||||+++|+..+
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 567777 77778777 99999999999999999765
No 332
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.64 E-value=0.055 Score=59.10 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=33.8
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
.+||.++.++.|...+... . -..+-|+++||+|+|||+||+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~--------~----------------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL--------K----------------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS--------T----------------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc--------c----------------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3799999999988887300 0 0124577999999999999999863
No 333
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.64 E-value=0.036 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHHh
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~l 354 (581)
++++. ++|+||||+|||||++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44454 4599999999999999998644
No 334
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.55 E-value=0.019 Score=61.75 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCCCcccccCccE---EEECCCCCChHHHHHHHHHH
Q 008014 321 VDDDTVELEKSNI---LLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 321 l~~v~~~v~~~~V---LL~GPPGTGKTtLAraLA~~ 353 (581)
++++++.+.++.+ .|+||+|+|||||.++|+..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5667777777875 59999999999999999865
No 335
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.55 E-value=0.012 Score=61.50 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 320 ~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.++++++.+.++-+.|+||+|+|||||.++|+..++
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999988666999999999999999987775
No 336
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.53 E-value=0.46 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.1
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
.++++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5789999999999987765553
No 337
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.52 E-value=0.11 Score=55.46 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=24.2
Q ss_pred CcccccCc-cEEEECCCCCChHHHHHHHHHHh
Q 008014 324 DTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 324 v~~~v~~~-~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+.+.+.++ .++++||+|||||+|++.|++..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34444444 56699999999999999999865
No 338
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.47 E-value=0.024 Score=66.81 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=30.9
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~ 352 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999877 999999999999999984
No 339
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.39 E-value=0.089 Score=50.14 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=25.6
Q ss_pred ccCcc-EEEECCCCCChHHHHHHHHHH----hCCCeEEeccc
Q 008014 328 LEKSN-ILLMGPTGSGKTLLAKTLARY----VNVPFVIADAT 364 (581)
Q Consensus 328 v~~~~-VLL~GPPGTGKTtLAraLA~~----l~~~fv~i~~s 364 (581)
++++. +++.|+||+|||++|..+|.. .+.+.+.++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 44454 459999999999999887532 25666555543
No 340
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.37 E-value=0.11 Score=58.06 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=15.4
Q ss_pred ccEEEECCCCCChHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTL 350 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraL 350 (581)
.-.|+.||||||||+++-.+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 35679999999999765444
No 341
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.37 E-value=0.027 Score=62.15 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.6
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++.+++.+.++.++ |.||+|+|||||+++|+...
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455556777777 99999999999999999866
No 342
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.31 E-value=0.031 Score=59.91 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+-+++.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999998884
No 343
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.30 E-value=0.081 Score=53.70 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=29.2
Q ss_pred CCCcccccCccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 322 ~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
+++++. ++..+.++|++|+||||+++.+|..+ +..+..+++
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 345565 44456699999999999999999766 445444443
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.24 E-value=0.022 Score=57.82 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=23.1
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC---CCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~---~~fv~i~~s~l 366 (581)
-|.+.||+|+||||+|+.|++.++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 355999999999999999998775 33444555443
No 345
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.08 E-value=0.031 Score=62.61 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=27.3
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++.+++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444556777777 99999999999999999866
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.07 E-value=0.052 Score=56.21 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEECCCCCChHHHHHHHHHHhC
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+.|.||+||||||+++.|+..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 44999999999999999999875
No 347
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.07 E-value=0.027 Score=62.16 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=27.3
Q ss_pred CCCcccccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 322 ~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+.+++.+.++.++ |.||+|+|||||+++|+...
T Consensus 285 ~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 285 VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345567778777 99999999999999999766
No 348
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.04 E-value=0.059 Score=54.84 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.8
Q ss_pred CccEEEECCCCCChHHHHHHHHHHh----CCCeEEecc
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~l----~~~fv~i~~ 363 (581)
+..++|+||+|+||||++..||..+ |..+..+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4566699999999999999998765 445554544
No 349
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.97 E-value=0.049 Score=54.69 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+.|.||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999766
No 350
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.85 E-value=0.072 Score=58.46 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC--CCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~--~~fv~i~~s 364 (581)
..+++.||+|+||||++++++..+. ...+.+...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 4688999999999999999998874 234455443
No 351
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.84 E-value=0.028 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.9
Q ss_pred CcccccCccEEEECCCCCChHHHHHHHH
Q 008014 324 DTVELEKSNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 324 v~~~v~~~~VLL~GPPGTGKTtLAraLA 351 (581)
+++......|++.|++|+|||+|.+.+.
T Consensus 19 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 19 LGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred hhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3444555789999999999999999885
No 352
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.83 E-value=0.06 Score=49.03 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=24.0
Q ss_pred cccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 325 ~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+...++-.+++||+|+|||++..+|.-.+
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444555666799999999999999998655
No 353
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.042 Score=61.62 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=29.5
Q ss_pred CCCCCcccccCc-----cE-EEECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKS-----NI-LLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~-----~V-LL~GPPGTGKTtLAraLA~~l 354 (581)
+++++++.+.++ .+ .|.||+|+|||||+++|+...
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 467788888877 33 599999999999999999876
No 354
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.73 E-value=0.58 Score=52.13 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=27.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh-------CCCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l-------~~~fv~i~~s~ 365 (581)
.|+|+.|.+|+|||++++.+...+ ...++.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 799999999999999999876433 23477777663
No 355
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.71 E-value=0.033 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.+.|+|++|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 567999999999999999998873
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.71 E-value=0.019 Score=61.52 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+.|.||+|+|||||.++|+...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 45599999999999999999743
No 357
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.70 E-value=0.063 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.+++.|++|+|||||.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999875
No 358
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.66 E-value=0.02 Score=67.45 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l~ 355 (581)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999887 999999999999999998763
No 359
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.63 E-value=0.48 Score=45.68 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=23.3
Q ss_pred EEEECCCCCChH-HHHHHHHHHh--CCCeEEecc
Q 008014 333 ILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (581)
Q Consensus 333 VLL~GPPGTGKT-tLAraLA~~l--~~~fv~i~~ 363 (581)
.+++||.|+||| .|.+++.+.. +...+.+..
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 348999999999 8888887654 556665553
No 360
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.52 E-value=0.062 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=20.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-.+.|.|++|+|||||.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 357799999999999999998754
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.50 E-value=0.048 Score=57.02 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=27.0
Q ss_pred CCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 321 l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
++++++.++++-.+|+||+|+||||+..+|+-.+
T Consensus 14 ~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 14 LKNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455667777767799999999999999997443
No 362
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.49 E-value=0.061 Score=51.43 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.2
Q ss_pred CcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 324 DTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 324 v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.-+.+...++||.|++|+||||+|..+.+.
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345566789999999999999999999874
No 363
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.38 E-value=0.075 Score=59.13 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=28.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC----CCeEEecccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~----~~fv~i~~s~ 365 (581)
..|+|.|++|+||||+|++|++.++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 3567999999999999999999875 6777776544
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.34 E-value=0.095 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred CccEEEECCCCCChHHHHHHHHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
...|++.|++|+|||+|.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999864
No 365
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.32 E-value=0.048 Score=58.72 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=22.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
..|+|+|.||+||||+++.|++.++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999988753
No 366
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.26 E-value=0.071 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.-++|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3577999999999999999999984
No 367
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.25 E-value=0.39 Score=46.95 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=22.2
Q ss_pred EECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 335 LMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 335 L~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
++||.|+||||.+..++..+ +...+.+..
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 89999999999988776544 566655553
No 368
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.24 E-value=0.081 Score=55.51 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 320 ~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.++++++.+.++-.+|+||+|+|||++.++|+-.+
T Consensus 16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 45677888888866699999999999999998654
No 369
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.23 E-value=0.12 Score=51.08 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
-++++.|+|||||||+|-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468899999999999999998665 566554444
No 370
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.22 E-value=0.08 Score=51.28 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.2
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
-|+|.|++|+||||+++.|++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999998873
No 371
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.15 E-value=0.14 Score=56.12 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=33.1
Q ss_pred cChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 280 vGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+|.+..++.|...+... .. . ..+.|.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------~~-~---------------------~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------CD-L---------------------DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------TT-S---------------------SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------cC-C---------------------CceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999998887410 00 0 114566999999999999999996
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.11 E-value=0.076 Score=51.29 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.2
Q ss_pred EEEECCCCCChHHHHHHHHHH
Q 008014 333 ILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~ 353 (581)
+.|.|+.|+||||+++.|+..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 449999999999999999987
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.07 E-value=0.11 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+.+.|+||+||||+++.++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999998765
No 374
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.05 E-value=0.088 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-+.|.|++|+||||+++.+.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 356799999999999999998765
No 375
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.00 E-value=0.086 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..+++.|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999753
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.00 E-value=0.091 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-+.|.|++|+||||++..|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 346699999999999999998876
No 377
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.91 E-value=0.075 Score=58.44 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
..|+|.|.+||||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999999974
No 378
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.89 E-value=0.15 Score=55.13 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.2
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+-.++.|+||||||++.+.++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3456999999999999987764
No 379
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.86 E-value=0.04 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.1
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
.-|+|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3566999999999999999999883
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.86 E-value=0.093 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 381
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.83 E-value=0.056 Score=59.93 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=26.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhC----CCeEEeccccc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~----~~fv~i~~s~l 366 (581)
.+.|.|++|+||||++++|++.++ ..+..++..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 466999999999999999999884 23444555443
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.78 E-value=0.1 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..|++.|++|+|||+|+..+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 383
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.76 E-value=0.099 Score=46.11 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999763
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.76 E-value=0.079 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.7
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-|+|.|++|+||||+++.|++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999877
No 385
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.74 E-value=0.091 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 386
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.64 E-value=0.093 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|+|.|++|+|||+|.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999986
No 387
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.58 E-value=0.1 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999988753
No 388
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.57 E-value=0.098 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999754
No 389
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.52 E-value=0.084 Score=48.41 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=19.7
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999975
No 390
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.51 E-value=0.1 Score=55.84 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCCcccccCccEE-EECCCCCChHHHHHHHHHHh----CCCeEEeccc
Q 008014 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (581)
Q Consensus 321 l~~v~~~v~~~~VL-L~GPPGTGKTtLAraLA~~l----~~~fv~i~~s 364 (581)
||.+.-.++++.++ +.|+||+|||+++..+|..+ +.+++.++..
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44444445666555 99999999999999997644 4566655543
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.50 E-value=0.064 Score=49.92 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=20.9
Q ss_pred ccccCc-cEEEECCCCCChHHHHHHHHH
Q 008014 326 VELEKS-NILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 326 ~~v~~~-~VLL~GPPGTGKTtLAraLA~ 352 (581)
+.+.++ .+.|.|++|+|||||.++++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 333444 466999999999999998864
No 392
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.46 E-value=0.11 Score=55.68 Aligned_cols=34 Identities=44% Similarity=0.598 Sum_probs=26.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
..++++|++|+||||++..||..+ |.....+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 578899999999999999998766 4555555553
No 393
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.42 E-value=0.11 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..+++.|++|+|||+|.+.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999975
No 394
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.40 E-value=0.072 Score=54.12 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=19.6
Q ss_pred CCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 320 ~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
+++++++. |++.||+|+|||||.+.|+.
T Consensus 13 ~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 13 VKKGFEFT-----LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -----CEE-----EEEEEETTSSHHHHHHHHHC
T ss_pred EEcCCCEE-----EEEECCCCCCHHHHHHHHhC
Confidence 34455543 48999999999999999864
No 395
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.35 E-value=0.18 Score=52.47 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.0
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEec
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~ 362 (581)
..+|+++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35799999999999999999997543 44444444
No 396
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.28 E-value=0.11 Score=49.39 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCCeEEeccc
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~s 364 (581)
+|++|++|+|||++|+.++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 7777666554
No 397
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.13 Score=47.03 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..|++.|++|+|||+|...+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999764
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.24 E-value=0.22 Score=51.58 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=24.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh---CCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~ 362 (581)
..|.|+|+||+||||++..++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 457799999999999999998775 44444333
No 399
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.16 E-value=0.065 Score=56.34 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=28.4
Q ss_pred CCCCCCcccccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..++++.......-+.|.||+|+|||||+++|+....
T Consensus 204 ~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 204 DGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp BTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 3455566666655677999999999999999987553
No 400
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.13 E-value=0.13 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-.|++.|++|+|||+|.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999997543
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.12 E-value=0.16 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhCCC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~~~ 357 (581)
.-|+|.|++|+||||+++.|++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 356699999999999999999999764
No 402
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.09 E-value=0.12 Score=46.05 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.6
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999863
No 403
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.09 E-value=0.12 Score=50.31 Aligned_cols=31 Identities=39% Similarity=0.417 Sum_probs=26.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCCCeEEecc
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~~fv~i~~ 363 (581)
.|-|+|..||||||+++.+++ +|.+++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 466999999999999999998 8888875544
No 404
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.03 E-value=0.099 Score=55.98 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCCCCCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+++++++.+ .|.|++|+|||||+++|+...
T Consensus 25 ~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 25 SVKRGFEFTL-----MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TCC-CCCEEE-----EEECCTTSSHHHHHHHHTTCC
T ss_pred EEecCCCEEE-----EEECCCCCcHHHHHHHHhCCC
Confidence 3566666654 899999999999999998653
No 405
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.00 E-value=0.21 Score=55.80 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
+.+++.||||||||+++..+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987766543
No 406
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.99 E-value=0.12 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-|+|.|++|+||||+++.|++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999877
No 407
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.90 E-value=0.13 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999974
No 408
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.90 E-value=1.6 Score=44.13 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.4
Q ss_pred ccEEEECCCCCChHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA 351 (581)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998765444
No 409
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.89 E-value=0.13 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 410
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.85 E-value=0.15 Score=48.72 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=25.3
Q ss_pred cccccCccEEEECCCCCChHHHHHHHHHHhCC
Q 008014 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 325 ~~~v~~~~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
.+...++-.+|+||+|+|||++..+|.-.+..
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 44455566779999999999999999866643
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.83 E-value=0.14 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999988753
No 412
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.81 E-value=0.12 Score=52.64 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCCcccccCccE-EEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 321 VDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 321 l~~v~~~v~~~~V-LL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
||.+.-.+.++.+ ++.|+||+|||++|..+|... +.+.+.++..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4444434555654 499999999999999998544 3455555543
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.79 E-value=0.13 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999975
No 414
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.78 E-value=0.13 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999875
No 415
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.73 E-value=0.13 Score=45.41 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.7
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999874
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.70 E-value=0.14 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|++.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999985
No 417
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.70 E-value=0.15 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999975
No 418
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.69 E-value=0.14 Score=45.44 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.6
Q ss_pred cEEEECCCCCChHHHHHHHH
Q 008014 332 NILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA 351 (581)
.|++.|++|+|||+|++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
No 419
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.53 E-value=0.16 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEECCCCCChHHHHHHHHHH
Q 008014 332 NILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.|++.|++|+|||+|.+.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.45 E-value=0.14 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred cEEEECCCCCChHHHHHHHHHHh
Q 008014 332 NILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-|+|.|++|+||||+++.|++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46699999999999999999877
No 421
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.42 E-value=0.16 Score=49.87 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEECCCCCChHHHHHHHHHHhCC
Q 008014 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~~l~~ 356 (581)
-|.|.|++|+||||+++.|++.++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4559999999999999999987643
No 422
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.35 E-value=0.13 Score=45.44 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.8
Q ss_pred ccEEEECCCCCChHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA 351 (581)
-.|++.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999885
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.28 E-value=0.16 Score=55.51 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=21.2
Q ss_pred cCcc-EEEECCCCCChHHHHHHHHHHh
Q 008014 329 EKSN-ILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 329 ~~~~-VLL~GPPGTGKTtLAraLA~~l 354 (581)
.++. +++.||+|+|||||+++++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3354 4599999999999999998655
No 424
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.28 E-value=0.17 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 425
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.22 E-value=0.11 Score=57.48 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=21.4
Q ss_pred CccEE-EECCCCCChHHHHHHHHHHh
Q 008014 330 KSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 330 ~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
++.++ |.||+|+|||||.|+|+..+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35555 99999999999999999765
No 426
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.20 E-value=0.19 Score=44.53 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|++.|++|+|||+|...+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999965
No 427
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.19 E-value=0.17 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57899999999999999999753
No 428
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.14 E-value=0.17 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999753
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.17 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999998753
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.11 E-value=0.15 Score=45.47 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.1
Q ss_pred ccEEEECCCCCChHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA 351 (581)
-.|++.|++|+|||+|++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999885
No 431
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.10 E-value=0.16 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..|++.|++|+|||+|.+.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999764
No 432
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.10 E-value=0.17 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999854
No 433
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.08 E-value=0.14 Score=52.25 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCcccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 323 ~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.+++.+.++-.+|+||+|+|||++.++|.-.+
T Consensus 17 ~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 34566666666699999999999999998655
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.13 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.8
Q ss_pred ccCccEE-EECCCCCChHHHHHHHHHHh
Q 008014 328 LEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 328 v~~~~VL-L~GPPGTGKTtLAraLA~~l 354 (581)
+.++.++ |.||+|+|||||.++|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3456666 99999999999999999766
No 435
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.06 E-value=0.17 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999764
No 436
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.01 E-value=0.16 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999974
No 437
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.00 E-value=0.18 Score=45.74 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=20.8
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-.|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999887644
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.98 E-value=0.15 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..++|.|++|+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 439
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.94 E-value=0.17 Score=45.22 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|++.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999999873
No 440
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.93 E-value=0.24 Score=58.01 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=34.5
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.++|.++.+++|.+.+... . -..+-|.|+|+.|+|||+||+.+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~-------~-----------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKL-------N-----------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTT-------T-----------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhc-------c-----------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4799999999998888310 0 01145669999999999999988753
No 441
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.92 E-value=0.18 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 442
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.84 E-value=0.18 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.4
Q ss_pred CccEEEECCCCCChHHHHHHHHHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.-.|+|.|++|+|||+|++.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999877653
No 443
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.77 E-value=0.19 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999998753
No 444
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.68 E-value=0.2 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999854
No 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.60 E-value=0.19 Score=47.25 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999987763
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.58 E-value=0.2 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999874
No 447
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.56 E-value=0.18 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 448
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.54 E-value=0.18 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 449
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.49 E-value=0.62 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+.|.|+||+|||||.++++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346699999999999999998764
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.46 E-value=0.19 Score=45.87 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|++.|++|+|||+|...+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6789999999999999999864
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.40 E-value=0.17 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred cEEEECCCCCChHHHHHHHHH
Q 008014 332 NILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 332 ~VLL~GPPGTGKTtLAraLA~ 352 (581)
.|++.|++|+|||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999874
No 452
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.40 E-value=0.19 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..|++.|++|+|||+|.+.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999998653
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.34 E-value=0.21 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999853
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.28 E-value=0.33 Score=46.14 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.7
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCCeEEe
Q 008014 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l---~~~fv~i 361 (581)
|.|.|+-|+||||.++.|++.+ |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4689999999999999999877 5555443
No 455
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.26 E-value=0.22 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999875
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.22 E-value=0.33 Score=46.88 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=24.7
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh--CCCeEEec
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIAD 362 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l--~~~fv~i~ 362 (581)
..+++.|.+|+||||++..++..+ +.....++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456699999999999999998766 44554444
No 457
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.17 E-value=0.22 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 458
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.13 E-value=0.22 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998753
No 459
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=89.10 E-value=0.12 Score=60.92 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraL 350 (581)
.+++++++.++.+.++ ++|++|+|||||++.+
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 3689999999999888 9999999999999985
No 460
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.09 E-value=0.36 Score=55.78 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=19.3
Q ss_pred CccEEEECCCCCChHHHHHHHHHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
.+.+++.||||||||+++..++..
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999988776544
No 461
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.06 E-value=0.29 Score=54.02 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.9
Q ss_pred ccEEEECCCCCChHHHHHHHHHHhC---CCeEEecc
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADA 363 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l~---~~fv~i~~ 363 (581)
..|+|.|++|+||||+|+.|++.++ .++..++.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 3567999999999999999998763 45555554
No 462
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.04 E-value=0.23 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999754
No 463
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=89.00 E-value=0.072 Score=61.92 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCCCCcccccCccEE-EECCCCCChHHHHHH-HHH
Q 008014 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKT-LAR 352 (581)
Q Consensus 320 ~l~~v~~~v~~~~VL-L~GPPGTGKTtLAra-LA~ 352 (581)
+++++++.++++.++ ++|++|+|||||++. |+.
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 689999999999888 999999999999996 553
No 464
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.97 E-value=0.34 Score=51.63 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=26.7
Q ss_pred ccCccE-EEECCCCCChHHHHHHHHHHh----CCCeEEeccc
Q 008014 328 LEKSNI-LLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (581)
Q Consensus 328 v~~~~V-LL~GPPGTGKTtLAraLA~~l----~~~fv~i~~s 364 (581)
++++.+ ++.|+||+|||++|..+|... +.+++.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344544 599999999999999987543 4566666554
No 465
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.92 E-value=0.17 Score=52.32 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCCCcccccCccEEEECCCCCChHHHHHHHHHH
Q 008014 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 321 l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
+.+.-+.+...+++|.|++|+|||++|..+.+.
T Consensus 135 ~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 135 LHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 445556677789999999999999999999774
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.92 E-value=0.23 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.24 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 468
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.79 E-value=0.2 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..|.|.|+||+|||||.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 469
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.75 E-value=0.25 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEECCCCCChHHHHHHHHHHhC
Q 008014 333 ILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 333 VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
|.|.|+.|+||||.++.|++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 56999999999999999999883
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.66 E-value=0.25 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 471
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.63 E-value=0.22 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|++.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5789999999999999999874
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.62 E-value=0.26 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999764
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.60 E-value=0.26 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999874
No 474
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.59 E-value=0.17 Score=51.94 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred ccccCccEEEECCCCCChHHHHHHHHHHh
Q 008014 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 326 ~~v~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
+...++-.+|+||+|+|||++..+|.-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666799999999999999986433
No 475
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.58 E-value=0.19 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998763
No 476
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.57 E-value=0.26 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999975
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.56 E-value=0.24 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|++.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998874
No 478
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.56 E-value=0.24 Score=46.62 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.3
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
..+++.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998765
No 479
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.54 E-value=0.26 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47899999999999999888753
No 480
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.53 E-value=0.24 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
-.|++.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 478999999999999999997644
No 481
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.51 E-value=0.26 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|++.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5789999999999999999974
No 482
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.48 E-value=0.25 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.7
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
...-+.|.||+|+|||||.++|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 33445699999999999999999 54
No 483
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.45 E-value=0.33 Score=51.12 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=26.7
Q ss_pred cCccEEEECCCCCChHHHHHHHHHHh---CCCeEEecc
Q 008014 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (581)
Q Consensus 329 ~~~~VLL~GPPGTGKTtLAraLA~~l---~~~fv~i~~ 363 (581)
...|+++.|++|+|||++++.+...+ +..++.+|.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 45899999999999999987775433 555665654
No 484
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.24 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|.+.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999753
No 485
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=88.41 E-value=0.11 Score=61.02 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=29.5
Q ss_pred CCCCCCcccccCccEE-EECCCCCChHHHHHHH
Q 008014 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VL-L~GPPGTGKTtLAraL 350 (581)
.+++++++.++.+.++ ++|++|+|||||++.+
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 3689999999999888 9999999999999985
No 486
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.27 E-value=0.25 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.2
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5789999999999999999975
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.20 E-value=0.28 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|...+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999874
No 488
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.19 E-value=0.23 Score=51.73 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=27.5
Q ss_pred cccCccE-EEECCCCCChHHHHHHHHHHh---CCCeEEeccc
Q 008014 327 ELEKSNI-LLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (581)
Q Consensus 327 ~v~~~~V-LL~GPPGTGKTtLAraLA~~l---~~~fv~i~~s 364 (581)
.+.++.+ ++.|+||+|||++|..+|..+ +.++..++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4555554 499999999999999998654 5565555543
No 489
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.18 E-value=0.17 Score=45.50 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.1
Q ss_pred ccEEEECCCCCChHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA 351 (581)
..|++.|++|+|||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999998875
No 490
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.17 E-value=0.26 Score=45.68 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
-.|++.|++|+|||+|++.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 57899999999999999999853
No 491
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.17 E-value=0.25 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|+|.|++|+|||+|..+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 5789999999999999999875
No 492
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.16 E-value=0.26 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 493
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.14 E-value=0.26 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
-.|++.|++|+|||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998864
No 494
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.00 E-value=0.24 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred CccEEEECCCCCChHHHHHHHH
Q 008014 330 KSNILLMGPTGSGKTLLAKTLA 351 (581)
Q Consensus 330 ~~~VLL~GPPGTGKTtLAraLA 351 (581)
...|++.|++|+|||+|.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999885
No 495
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.99 E-value=0.3 Score=45.47 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLARY 353 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~ 353 (581)
..|++.|++|+|||+|...+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.97 E-value=0.24 Score=45.23 Aligned_cols=22 Identities=50% Similarity=0.653 Sum_probs=19.7
Q ss_pred ccEEEECCCCCChHHHHHHHHH
Q 008014 331 SNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..|++.|++|+|||+|.+.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998864
No 497
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.92 E-value=0.29 Score=50.48 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 319 ~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
.+++++++.++ .|+++|++|+|||+|..++..
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHT
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhC
Confidence 36677777776 788999999999999999986
No 498
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.89 E-value=0.38 Score=57.41 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.7
Q ss_pred cccChHHHHHHHHHHHHhhHHHHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEECCCCCChHHHHHHHHH
Q 008014 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (581)
Q Consensus 278 ~VvGqd~ak~~L~~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~v~~~v~~~~VLL~GPPGTGKTtLAraLA~ 352 (581)
..+|.++.++.|.+.+.. .. ..+-+.++|+.|+||||||+.+++
T Consensus 129 ~~VGRe~eLeeL~elL~~--------~d-----------------------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLE--------LR-----------------------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHH--------CC-----------------------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhc--------cC-----------------------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 358999999998887740 00 014567999999999999999985
No 499
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.89 E-value=0.1 Score=51.27 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.3
Q ss_pred ccCccEEEECCCCCChHHHHHHHHHHhC
Q 008014 328 LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (581)
Q Consensus 328 v~~~~VLL~GPPGTGKTtLAraLA~~l~ 355 (581)
+.+.-+.|.||+|+||||+.++|+..+.
T Consensus 25 ~~~~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 25 LDELVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EcCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 3333345899999999999999998873
No 500
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.82 E-value=0.23 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred ccEEEECCCCCChHHHHHHHHHHh
Q 008014 331 SNILLMGPTGSGKTLLAKTLARYV 354 (581)
Q Consensus 331 ~~VLL~GPPGTGKTtLAraLA~~l 354 (581)
.-+.|.||+|+|||||.++|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 445599999999999999998765
Done!