Query 008015
Match_columns 581
No_of_seqs 490 out of 2809
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 18:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.2E-44 2.6E-49 382.1 19.8 298 244-574 9-334 (365)
2 KOG0697 Protein phosphatase 1B 100.0 1.1E-44 2.3E-49 352.8 13.5 247 313-576 30-297 (379)
3 PTZ00224 protein phosphatase 2 100.0 7.5E-42 1.6E-46 362.1 18.3 244 298-573 21-274 (381)
4 KOG0698 Serine/threonine prote 100.0 6.1E-42 1.3E-46 359.1 17.0 244 312-574 47-308 (330)
5 PF00481 PP2C: Protein phospha 100.0 3.4E-41 7.5E-46 341.5 8.2 231 312-562 7-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 4.9E-39 1.1E-43 326.9 16.2 243 298-575 7-257 (262)
7 KOG0699 Serine/threonine prote 100.0 4.7E-36 1E-40 301.1 16.0 161 398-572 331-505 (542)
8 PRK14559 putative protein seri 100.0 2.1E-34 4.5E-39 321.2 15.4 241 298-576 374-641 (645)
9 cd00143 PP2Cc Serine/threonine 100.0 9.3E-34 2E-38 284.3 17.4 235 312-569 8-254 (254)
10 KOG0700 Protein phosphatase 2C 100.0 1.2E-33 2.6E-38 291.5 10.9 227 319-557 85-378 (390)
11 smart00332 PP2Cc Serine/threon 100.0 2E-32 4.4E-37 275.5 16.4 233 312-567 13-255 (255)
12 KOG1323 Serine/threonine phosp 100.0 2.2E-28 4.9E-33 243.8 15.4 287 274-572 51-489 (493)
13 KOG1379 Serine/threonine prote 99.9 6.7E-21 1.5E-25 191.2 16.1 216 319-568 91-329 (330)
14 KOG0618 Serine/threonine phosp 99.7 1.1E-17 2.4E-22 187.0 12.5 250 297-577 520-779 (1081)
15 PF13672 PP2C_2: Protein phosp 99.6 2.5E-16 5.3E-21 154.9 8.6 180 313-531 6-195 (212)
16 PF00498 FHA: FHA domain; Int 99.6 2.2E-16 4.8E-21 127.3 5.1 68 204-280 1-68 (68)
17 smart00331 PP2C_SIG Sigma fact 99.6 4.1E-14 8.9E-19 137.0 14.9 172 319-554 17-192 (193)
18 TIGR02865 spore_II_E stage II 99.4 2.2E-12 4.7E-17 149.2 17.7 192 313-569 561-763 (764)
19 cd00060 FHA Forkhead associate 99.4 1.2E-12 2.6E-17 113.1 9.5 89 178-281 2-93 (102)
20 TIGR03354 VI_FHA type VI secre 99.4 6.8E-13 1.5E-17 142.2 9.3 94 179-288 2-103 (396)
21 PLN02927 antheraxanthin epoxid 99.4 9.3E-13 2E-17 149.0 9.1 99 175-283 531-638 (668)
22 COG1716 FOG: FHA domain [Signa 99.3 6.2E-12 1.3E-16 121.7 8.0 70 203-284 90-159 (191)
23 smart00240 FHA Forkhead associ 99.2 2.2E-11 4.8E-16 92.5 3.9 51 204-255 1-52 (52)
24 KOG1882 Transcriptional regula 99.2 1.6E-11 3.6E-16 118.6 3.6 108 168-287 164-283 (293)
25 KOG1881 Anion exchanger adapto 99.1 7.5E-11 1.6E-15 129.5 8.6 118 164-293 143-269 (793)
26 PF07228 SpoIIE: Stage II spor 99.1 3.8E-10 8.3E-15 108.9 12.6 178 332-570 4-193 (193)
27 COG3456 Predicted component of 99.0 6.1E-10 1.3E-14 116.6 7.7 95 178-288 3-104 (430)
28 KOG1880 Nuclear inhibitor of p 98.4 1.1E-07 2.4E-12 95.2 3.2 109 166-287 5-116 (337)
29 TIGR02500 type_III_yscD type I 98.0 1.7E-05 3.7E-10 86.2 7.8 93 178-287 1-94 (410)
30 COG2208 RsbU Serine phosphatas 97.7 0.0011 2.5E-08 70.9 17.0 65 499-570 291-366 (367)
31 KOG0615 Serine/threonine prote 97.4 0.00022 4.7E-09 75.5 5.2 77 203-288 65-154 (475)
32 KOG0245 Kinesin-like protein [ 95.4 0.026 5.7E-07 65.6 6.1 78 190-283 470-550 (1221)
33 KOG1892 Actin filament-binding 95.2 0.047 1E-06 62.9 7.6 95 179-290 358-457 (1629)
34 KOG2293 Daxx-interacting prote 93.5 0.14 3E-06 56.0 6.2 92 179-287 432-530 (547)
35 TIGR01663 PNK-3'Pase polynucle 89.6 0.49 1.1E-05 53.1 5.4 78 190-283 25-102 (526)
36 KOG0241 Kinesin-like protein [ 87.3 0.98 2.1E-05 52.7 5.7 95 177-289 446-542 (1714)
37 PF15102 TMEM154: TMEM154 prot 81.1 1.4 3E-05 40.8 2.9 27 13-39 68-94 (146)
38 KOG1094 Discoidin domain recep 74.7 5.8 0.00013 44.7 5.9 24 12-35 397-420 (807)
39 PRK15367 type III secretion sy 70.8 12 0.00025 40.5 6.9 89 176-286 3-91 (395)
40 PF15176 LRR19-TM: Leucine-ric 65.1 5.5 0.00012 34.4 2.5 31 9-39 22-52 (102)
41 PF12273 RCR: Chitin synthesis 64.7 3.7 8.1E-05 37.3 1.6 19 10-28 4-22 (130)
42 PF06679 DUF1180: Protein of u 51.5 16 0.00035 34.6 3.5 27 8-34 95-121 (163)
43 cd01324 cbb3_Oxidase_CcoQ Cyto 50.3 22 0.00047 26.7 3.3 23 9-31 13-35 (48)
44 PF12273 RCR: Chitin synthesis 47.6 18 0.00038 32.9 3.0 32 5-36 2-33 (130)
45 PF11027 DUF2615: Protein of u 46.7 19 0.00041 31.5 2.9 26 8-33 53-78 (103)
46 PF13275 S4_2: S4 domain; PDB: 46.6 14 0.00031 29.5 2.0 33 246-287 33-65 (65)
47 PF08114 PMP1_2: ATPase proteo 44.1 13 0.00028 26.7 1.2 25 7-31 10-34 (43)
48 PF07423 DUF1510: Protein of u 41.3 23 0.0005 35.2 2.9 20 9-28 17-36 (217)
49 PF02439 Adeno_E3_CR2: Adenovi 37.1 47 0.001 23.7 3.0 26 6-31 7-32 (38)
50 PF13253 DUF4044: Protein of u 36.6 45 0.00098 23.3 2.9 22 4-25 9-30 (35)
51 PF01479 S4: S4 domain; Inter 36.4 18 0.0004 26.4 1.1 23 246-277 26-48 (48)
52 COG4736 CcoQ Cbb3-type cytochr 36.3 46 0.001 26.2 3.3 27 7-33 10-36 (60)
53 TIGR02988 YaaA_near_RecF S4 do 35.4 31 0.00066 26.6 2.2 25 246-279 34-58 (59)
54 PF05545 FixQ: Cbb3-type cytoc 35.3 46 0.00099 24.8 3.1 23 9-31 12-34 (49)
55 PRK11507 ribosome-associated p 35.0 42 0.00092 27.3 3.0 32 246-286 37-68 (70)
56 PRK06531 yajC preprotein trans 33.5 32 0.0007 30.6 2.3 19 13-31 6-24 (113)
57 PF12911 OppC_N: N-terminal TM 33.2 45 0.00098 25.2 2.8 22 5-26 14-35 (56)
58 TIGR00847 ccoS cytochrome oxid 29.0 67 0.0015 24.5 3.0 9 44-52 30-38 (51)
59 PF14575 EphA2_TM: Ephrin type 27.9 66 0.0014 26.4 3.1 18 11-28 7-24 (75)
60 PF05393 Hum_adeno_E3A: Human 26.7 97 0.0021 26.3 3.8 28 9-36 37-64 (94)
61 PHA00007 E cell lysis protein 26.1 82 0.0018 26.0 3.2 22 5-26 7-28 (91)
62 KOG1110 Putative steroid membr 25.1 84 0.0018 30.3 3.6 61 10-74 9-69 (183)
63 PF14316 DUF4381: Domain of un 24.3 55 0.0012 30.2 2.3 23 10-32 25-47 (146)
64 PF07172 GRP: Glycine rich pro 23.4 78 0.0017 27.3 2.8 8 15-22 11-18 (95)
65 COG2501 S4-like RNA binding pr 22.3 84 0.0018 25.8 2.6 39 236-287 31-69 (73)
66 PF15102 TMEM154: TMEM154 prot 21.4 64 0.0014 30.0 2.0 27 10-36 62-88 (146)
67 PF09436 DUF2016: Domain of un 20.8 47 0.001 27.2 0.9 19 503-521 26-44 (72)
68 PRK14748 kdpF potassium-transp 20.4 1.5E+02 0.0033 19.7 3.0 19 6-24 5-23 (29)
69 smart00363 S4 S4 RNA-binding d 20.1 75 0.0016 23.0 1.9 27 245-280 25-51 (60)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.2e-44 Score=382.12 Aligned_cols=298 Identities=27% Similarity=0.387 Sum_probs=222.2
Q ss_pred cccccccccccCCCCCCCC-CCCCCCcccCCCCeEEecccceEEEE-Eeecc---ceeccccccccCChhHHhhcCccCC
Q 008015 244 SLNGTLLNSQPINHPDSGS-RHWGKPMELTSGDIITLGTTSSIHVQ-ITSET---VSQIPFGVGVASDPMALRRGAKKLP 318 (581)
Q Consensus 244 S~NGT~vng~~i~~p~~~~-~~~g~~~~L~~Gd~i~lG~~~~~~v~-v~~qn---~~~~~~~vg~asd~~~~~rgG~R~~ 318 (581)
+.+|+...|++-. |+... |+ +..++++..++-....+.... ...++ .+-.-+.+|.+++. |.|+.
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------G~R~~ 78 (365)
T PLN03145 9 GEGGSSGGGRPPN-PSVAACCK---PSLVRHSSLVKTPASDISVENELTFENMDTEFIPVVRSGAWADI------GSRSS 78 (365)
T ss_pred CCCCCcCCCCCCC-Cccccccc---chhhcchhhhhccccccccccccccccchhhccCceEEEEEccc------cCCCC
Confidence 4456666665443 33222 22 344555554443333333322 11122 11123467888875 67999
Q ss_pred CccceeeccCC-----------CCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhh
Q 008015 319 MEDVCYYHWPL-----------PGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQ 387 (581)
Q Consensus 319 nED~~~~~~~~-----------~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~ 387 (581)
|||++++...+ ....||||||||||+.+|++|++.+++.+.+... ....+.++|.++|.+
T Consensus 79 nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~---------~~~~~~~al~~af~~ 149 (365)
T PLN03145 79 MEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED---------FPREIEKVVSSAFLQ 149 (365)
T ss_pred CCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHHH
Confidence 99998764322 1257999999999999999999999998865211 023467889999999
Q ss_pred hhhhhhcc-------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCC
Q 008015 388 TEASMNHH-------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK 460 (581)
Q Consensus 388 ~~~~i~~~-------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~ 460 (581)
++.++.+. .+|||++++++..+. +|||||||||||++++|++++||+||++.++.|++||++.|+.+.
T Consensus 150 ~d~~~~~~~~~~~~~~~GTTavv~li~~~~-----l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~ 224 (365)
T PLN03145 150 TDTAFAEACSLDASLASGTTALAALVVGRS-----LVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVY 224 (365)
T ss_pred HhHHHHhhhccccCCCCcCcEEEEEEECCe-----EEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCcee
Confidence 99988542 479999988886432 679999999999999999999999999999999999999999987
Q ss_pred CCCeeeec-chhhhhhhhhhhhccc----cccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhc
Q 008015 461 DGETRLCG-LNLARMLGDKFLKQQD----ARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYS 535 (581)
Q Consensus 461 ~~~~Rv~G-l~vtRalGD~~~K~~~----~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~ 535 (581)
.+ |+.| +++||+|||+.+|..+ ..++++|++.. +.+. ..++|||||||||||+|+++++++++.+....
T Consensus 225 ~g--~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~-~~l~-~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~-- 298 (365)
T PLN03145 225 DG--YLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMT-TQLT-EEDEFLIIGCDGIWDVFRSQNAVDFARRRLQE-- 298 (365)
T ss_pred cc--eECCccccccccccccccccccccCCCcceEEEEEE-EECC-CCCEEEEEeCCccccCcCHHHHHHHHHHHHhc--
Confidence 76 7888 8999999999887432 34778999873 2332 34668899999999999999999988764432
Q ss_pred ccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 008015 536 ADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 574 (581)
Q Consensus 536 ~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~ 574 (581)
..+++++|+.|+++|+.+++.||+|||||+|+..++
T Consensus 299 ---~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~ 334 (365)
T PLN03145 299 ---HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPP 334 (365)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCC
Confidence 346899999999999999999999999999998544
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-44 Score=352.81 Aligned_cols=247 Identities=26% Similarity=0.350 Sum_probs=207.8
Q ss_pred cCccCCCccceeeccC----CCCCceeeeccCCCcchhhhhhhhhhHHHHHHH--hhhhhhhhhhhccCChhHHHHHHhh
Q 008015 313 GAKKLPMEDVCYYHWP----LPGFGLFGICDGHGGSAAAKSASEILPKMVAAI--LSDSLKRERLLSQCDASDVLRDAFF 386 (581)
Q Consensus 313 gG~R~~nED~~~~~~~----~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~--l~~~~~~e~~~~~~~~~~~L~~af~ 386 (581)
+|||-+|||++..... +.+|.||||||||.|+..+.++++.+.+.+... |..... .-+-.+.+.-|+..|.
T Consensus 30 QGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k---~gsv~~~~~GIrtGFL 106 (379)
T KOG0697|consen 30 QGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTK---NGSVENVEKGIRTGFL 106 (379)
T ss_pred cchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhcc---CCcHHHHHhhHhhcce
Confidence 5999999999966543 445999999999999999999999998888542 221110 0112356778999999
Q ss_pred hhhhhhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCc
Q 008015 387 QTEASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEP 458 (581)
Q Consensus 387 ~~~~~i~~~--------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~ 458 (581)
++++.+... .+||||+++++.... +|++|+||||++++|+|+++.-|+||+|.++.|++||+.+||.
T Consensus 107 ~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h-----~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGS 181 (379)
T KOG0697|consen 107 SIDEIMRTLSDISKGSDRSGSTAVCVFVSPTH-----IYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGS 181 (379)
T ss_pred eHHHHHhhhhhhhcccccCCceEEEEEecCce-----EEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCe
Confidence 999877643 589999999987654 6799999999999999999999999999999999999999999
Q ss_pred CCCCCeeeec-chhhhhhhhhhhhccc------cccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHh
Q 008015 459 LKDGETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMR 531 (581)
Q Consensus 459 i~~~~~Rv~G-l~vtRalGD~~~K~~~------~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~ 531 (581)
+.- .|++| |++||||||++||..+ +.|+++|+|.. ......++||||||||+||+|+++|++++++..+
T Consensus 182 VMI--qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~--~~R~eedeFivlACDGIwDVMtneelcefv~sRl 257 (379)
T KOG0697|consen 182 VMI--QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYI--IERSEEDEFIVLACDGIWDVMTNEELCEFVKSRL 257 (379)
T ss_pred EEE--EEecceeeeehhccCcccccCCCCCchhcccCCCCceEE--eeccccCcEEEEEccchhhhcccHHHHHHHHhhh
Confidence 874 49999 9999999999999753 57999999973 2334468899999999999999999999998743
Q ss_pred hhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcceee
Q 008015 532 EKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRMS 576 (581)
Q Consensus 532 ~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~~~ 576 (581)
.- ..+...+|+.+++.++-+|++||+|+|+|.|...|+.+
T Consensus 258 ~V-----t~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 258 EV-----TSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred ee-----cccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCCC
Confidence 32 56799999999999999999999999999999988754
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=7.5e-42 Score=362.12 Aligned_cols=244 Identities=24% Similarity=0.360 Sum_probs=198.8
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCCh
Q 008015 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDA 377 (581)
Q Consensus 298 ~~~vg~asd~~~~~rgG~R~~nED~~~~~~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~ 377 (581)
.+.+|.+++. |+|++|||++++.. .++..||||||||||..+++++++.+.+.+.+... ...
T Consensus 21 ~~~~g~~s~~------G~R~~nED~~~v~~-~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~-----------~~~ 82 (381)
T PTZ00224 21 IFRCASACVN------GYRESMEDAHLLYL-TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE-----------PMT 82 (381)
T ss_pred cEEEEEEeCC------CCCCCCCCeeEecc-CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc-----------ccc
Confidence 5667777774 88999999987643 23567999999999999999999888876643211 112
Q ss_pred hHHHHHHhhhhhhhhhcc--cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhc
Q 008015 378 SDVLRDAFFQTEASMNHH--YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQET 455 (581)
Q Consensus 378 ~~~L~~af~~~~~~i~~~--~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~ 455 (581)
.+.|+++|..+++++.+. .+|||++++++..+. .++||||||||+|++++|++++||+||++.++.|+.||.+.
T Consensus 83 ~~~l~~a~~~~d~~i~~~~~~~GsTatv~lI~~~~----~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~ 158 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDSGREGGSTGTFCVIMKDV----HLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEAC 158 (381)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEECC----EEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHc
Confidence 345888999998887654 469999988775432 26799999999999999999999999999999999999999
Q ss_pred CCcCCCCCeeeec-chhhhhhhhhhhhccc------cccCCCCCccceeeecccccceeeeccCCcce-eccHHHHHHHH
Q 008015 456 GEPLKDGETRLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWD-VISVKKAIQLV 527 (581)
Q Consensus 456 gg~i~~~~~Rv~G-l~vtRalGD~~~K~~~------~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD-~ls~~ei~~iv 527 (581)
|+.+..+ |+.| +++||+|||..+|..+ +.|+++|++. .+...++|||||||||||| +++++|+.+++
T Consensus 159 gg~v~~~--Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~---~~~l~~~D~llLaSDGL~d~~ls~eEi~~iv 233 (381)
T PTZ00224 159 GGRVVSN--RVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVT---HLTCQSNDFIILACDGVFEGNFSNEEVVAFV 233 (381)
T ss_pred cCEeccc--cccCceeeecccCCcccccccccccccCcceeeeEEE---EEECCCCCEEEEECCCcCcCccCHHHHHHHH
Confidence 9888765 8888 8999999999888653 2366788887 3444578999999999999 89999999999
Q ss_pred HHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcc
Q 008015 528 VQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTF 573 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~ 573 (581)
.+.... ..+++.+|+.|+++|+.+|+.||||||||+|..-+
T Consensus 234 ~~~l~~-----~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 234 KEQLET-----CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred HHHHhc-----CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 764322 35689999999999999999999999999998754
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-42 Score=359.15 Aligned_cols=244 Identities=33% Similarity=0.432 Sum_probs=204.4
Q ss_pred hcCccCCCccceeeccCCC--------CCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHH
Q 008015 312 RGAKKLPMEDVCYYHWPLP--------GFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRD 383 (581)
Q Consensus 312 rgG~R~~nED~~~~~~~~~--------~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~ 383 (581)
++|+|..|||++....... ..+||||||||||+.+|+|+.+.++..+.+........ ....+++++
T Consensus 47 ~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~------~~~~~a~~~ 120 (330)
T KOG0698|consen 47 IRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR------QDVKDALRR 120 (330)
T ss_pred cCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch------HHHHHHHHH
Confidence 3699999999987654422 26899999999999999999999999998765443211 247889999
Q ss_pred Hhh-hhhhhhhc-----ccccccEEEEEEEecCCcchhhcccccCCceeEEeecC-ceeeecccccccchhhhhhhhhcC
Q 008015 384 AFF-QTEASMNH-----HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDG-KQIKMSEDHRIASYSERLRIQETG 456 (581)
Q Consensus 384 af~-~~~~~i~~-----~~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g-~~~~LT~DH~~~~~~E~~RI~~~g 456 (581)
+|. +++.++.. ...|+||+++++... .+ +||||+|||||++++.| .+++||.||+|..+.|+.||+++|
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~-~~---l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKG-RK---LYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecC-CE---EEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 999 69999885 366777777766533 22 67999999999999766 799999999999999999999999
Q ss_pred CcCCCC--Ceeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhh
Q 008015 457 EPLKDG--ETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREK 533 (581)
Q Consensus 457 g~i~~~--~~Rv~G-l~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~ 533 (581)
|.+... .+|++| |++||+|||+.+|. +.|+++|++.. ......++|||||||||||+++++|++++|+.....
T Consensus 197 G~v~~~~~~~Rv~G~LavsRa~GD~~~k~--~~v~a~Pei~~--~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~ 272 (330)
T KOG0698|consen 197 GRVSNWGGVWRVNGVLAVSRAFGDVELKS--QGVIAEPEIQQ--VKINSDDEFLILASDGIWDVVSNQEAVDLVRDELAS 272 (330)
T ss_pred CEEEEcCCcceEeceEEEeeecCCHHhcC--CcEecCCceEE--EEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhc
Confidence 998643 579999 99999999999996 45999999983 344445889999999999999999999999985411
Q ss_pred hcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcce
Q 008015 534 YSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFR 574 (581)
Q Consensus 534 ~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~ 574 (581)
...+..++..|...|+.+++.||||||||.|...+.
T Consensus 273 -----~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 273 -----ISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred -----cccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 357899999999999999999999999999999864
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=3.4e-41 Score=341.51 Aligned_cols=231 Identities=36% Similarity=0.501 Sum_probs=183.6
Q ss_pred hcCccCCCccceeeccCC------CCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHh
Q 008015 312 RGAKKLPMEDVCYYHWPL------PGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAF 385 (581)
Q Consensus 312 rgG~R~~nED~~~~~~~~------~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af 385 (581)
.+|+|..|||++++..+. ....+|||||||||..+++++++.+++.+.+....... ..+.++|..+|
T Consensus 7 ~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~-------~~~~~al~~a~ 79 (254)
T PF00481_consen 7 MQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG-------NDIEEALRQAF 79 (254)
T ss_dssp EECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC-------HHHHHHHHHHH
T ss_pred CCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc-------cchhhccccee
Confidence 469999999999877633 23899999999999999999999999888776544321 15678899999
Q ss_pred hh-hhhhhhc-------ccccccEEEEEEEecCCcchhhcccccCCceeEEeecCcee-eecccccccchhhhhhhhhcC
Q 008015 386 FQ-TEASMNH-------HYEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQI-KMSEDHRIASYSERLRIQETG 456 (581)
Q Consensus 386 ~~-~~~~i~~-------~~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~-~LT~DH~~~~~~E~~RI~~~g 456 (581)
.. ++..+.. ..+||||+++++..+. +|+|||||||||+++++... +||+||++.++.|+.||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~-----l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~g 154 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNK-----LYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAG 154 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTE-----EEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT
T ss_pred eecccccccccccccccccccccccccccccce-----eEEEeeeeeeeeeeeccccccccccccccchhhccceeeccc
Confidence 98 7777654 3789999999886543 67999999999999999988 999999999999999999999
Q ss_pred CcCCCCCeeeec-chhhhhhhhhhhhcc-ccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhh
Q 008015 457 EPLKDGETRLCG-LNLARMLGDKFLKQQ-DARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKY 534 (581)
Q Consensus 457 g~i~~~~~Rv~G-l~vtRalGD~~~K~~-~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~ 534 (581)
+.+.. ..|+.| |++||+|||+.+|.. +++|+++|+|.. +.+.. .++|||||||||||+|+++|+++++.+....
T Consensus 155 g~v~~-~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~-~~l~~-~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~- 230 (254)
T PF00481_consen 155 GRVSE-NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISE-VDLTP-DDEFLVLASDGLWDVLSNEEIVDIVRESLNS- 230 (254)
T ss_dssp -GEEE-TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEE-EEEBT-TEEEEEEE-HHHHTTSHHHHHHHHHHHHHHH-
T ss_pred ccccc-chhhhhccccccccccccccccccceeeeeccccc-ccccc-cceEEEEEcccccccCCHHHHHHHHHHHHhc-
Confidence 99874 459999 899999999999973 236999999983 34443 3579999999999999999999999886432
Q ss_pred cccccchHHHHHHHHhhhhhhccccCCc
Q 008015 535 SADKENSTEKIANVLLSEARTLRTKDNT 562 (581)
Q Consensus 535 ~~~~~~~~~~~A~~Lv~~A~~~gs~DNi 562 (581)
...++.+|+.|+++|+++|+.|||
T Consensus 231 ----~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 231 ----GRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp ----HSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ----CCcHHHHHHHHHHHHHhcCCCCCC
Confidence 235899999999999999999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-39 Score=326.89 Aligned_cols=243 Identities=26% Similarity=0.388 Sum_probs=193.2
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCCCC--CceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccC
Q 008015 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPLPG--FGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQC 375 (581)
Q Consensus 298 ~~~vg~asd~~~~~rgG~R~~nED~~~~~~~~~~--~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~ 375 (581)
.+.++..++. ++.|..|||++++.....+ ..||+||||||||.+|++||+.+++.|.+.+......... .
T Consensus 7 ~~~~~~~s~~-----g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~---~ 78 (262)
T COG0631 7 SLKVAGLSDV-----GTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN---E 78 (262)
T ss_pred eeeeeeeccC-----CCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc---h
Confidence 3445566664 6788899999988753333 4599999999999999999999999999987764332110 1
Q ss_pred ChhHHHHHHhhhhhhhhhcc------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhh
Q 008015 376 DASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSER 449 (581)
Q Consensus 376 ~~~~~L~~af~~~~~~i~~~------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~ 449 (581)
...++|.+++..++..+... ..||++|++++...+++ +|+|||||||+|++++|++++||+||++.+..++
T Consensus 79 ~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~---l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~ 155 (262)
T COG0631 79 SLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNK---LYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQ 155 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCe---EEEEEccCCeEEEEcCCceEEeccCCcHHHHHHH
Confidence 16789999999998888654 35676776666666654 6799999999999999999999999999999999
Q ss_pred hhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHH
Q 008015 450 LRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQ 529 (581)
Q Consensus 450 ~RI~~~gg~i~~~~~Rv~Gl~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~ 529 (581)
.|+...++..... |.+ ++|||||+... .+|++. .....+++|+|||||||||.++++++.+++..
T Consensus 156 ~~~~~~~~~~~~~--~~~--~ltralG~~~~--------~~p~~~---~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~ 220 (262)
T COG0631 156 RGIITPEEARSHP--RRN--ALTRALGDFDL--------LEPDIT---ELELEPGDFLLLCSDGLWDVVSDDEIVDILKN 220 (262)
T ss_pred hcCCCHHHHHhCc--cch--hhhhhcCCCcc--------cceeEE---EEEcCCCCEEEEECCCCccCcCHHHHHHHHhc
Confidence 9975544333322 323 79999998754 367776 34445679999999999999999999999986
Q ss_pred HhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCccee
Q 008015 530 MREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRM 575 (581)
Q Consensus 530 ~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~~ 575 (581)
..+++++|+.|++.|+.+++.||+|+|+|.+...+..
T Consensus 221 ---------~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~~~ 257 (262)
T COG0631 221 ---------SETPQEAADKLIELALEGGGPDNITVVLVRLNGEGET 257 (262)
T ss_pred ---------CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccccc
Confidence 4789999999999999999999999999999877643
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-36 Score=301.14 Aligned_cols=161 Identities=34% Similarity=0.505 Sum_probs=141.1
Q ss_pred cccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCC-CCCeeeec-chhhhhh
Q 008015 398 GCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLK-DGETRLCG-LNLARML 475 (581)
Q Consensus 398 GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~-~~~~Rv~G-l~vtRal 475 (581)
||||+|+++..++ |||||.|||||+++|+|+++.||.||+|..+.|..||.++||.+. +| |++| |+++|||
T Consensus 331 GtTAvVcLv~g~~-----liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDG--RVNGGLNLSRA~ 403 (542)
T KOG0699|consen 331 GTTAVVCLVGGDK-----LIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDG--RVNGGLNLSRAF 403 (542)
T ss_pred CceEEEEEecCce-----EEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecc--eecCccchhhhh
Confidence 9999999986443 679999999999999999999999999999999999999999997 77 9999 9999999
Q ss_pred hhhhhhccc------cccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHH
Q 008015 476 GDKFLKQQD------ARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVL 549 (581)
Q Consensus 476 GD~~~K~~~------~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~A~~L 549 (581)
||..||... +.|++-|+|.. .+..+.++|+||||||||++|+.+|++++|+..+.. ......+|+.|
T Consensus 404 GDHaYK~N~~Lp~eEQMIsALPDiK~--l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~-----n~~ls~iceeL 476 (542)
T KOG0699|consen 404 GDHAYKKNQELPLEEQMISALPDIKI--LALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK-----NSSLSEICEEL 476 (542)
T ss_pred hhhhhhcccCCChHHHHhhhccccee--EeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc-----CchHHHHHHHH
Confidence 999999863 46888999973 344457899999999999999999999999886654 35688999999
Q ss_pred hhhhhhcc------ccCCceEEEEecCCc
Q 008015 550 LSEARTLR------TKDNTSIIFLDFDST 572 (581)
Q Consensus 550 v~~A~~~g------s~DNiTvIVV~~~~~ 572 (581)
++.+++-. +.||+|||++.|.+.
T Consensus 477 ~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 477 CDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 99987643 469999999999853
No 8
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.1e-34 Score=321.20 Aligned_cols=241 Identities=21% Similarity=0.291 Sum_probs=176.3
Q ss_pred cccccccCChhHHhhcCccCCCccceeeccCC-----------CCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhh
Q 008015 298 PFGVGVASDPMALRRGAKKLPMEDVCYYHWPL-----------PGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSL 366 (581)
Q Consensus 298 ~~~vg~asd~~~~~rgG~R~~nED~~~~~~~~-----------~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~ 366 (581)
.+.++.+++. |+.|..|||++.+.... .+..+|+|||||||+.+|++||+.+++.|.+.+....
T Consensus 374 ~l~~a~~Td~-----G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~ 448 (645)
T PRK14559 374 SLEDAGRTDV-----GRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW 448 (645)
T ss_pred eEEEEEECCC-----CCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh
Confidence 4667777875 55799999998664321 1257899999999999999999999999988776432
Q ss_pred hhhhhhccCChhHHHHHHhhhhhhhhhcc----------cccccEEEEEEEecCCcchhhcccccCCceeEEe-ecCcee
Q 008015 367 KRERLLSQCDASDVLRDAFFQTEASMNHH----------YEGCTATVLLVWADGNANIFAQCANVGDSACVMN-VDGKQI 435 (581)
Q Consensus 367 ~~e~~~~~~~~~~~L~~af~~~~~~i~~~----------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~-r~g~~~ 435 (581)
..+ ....+.|+++|..+|..+.+. .+|||++++++. +++ +|++||||||+|++ ++|+++
T Consensus 449 ~~~-----~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~--~~~---l~ianVGDSRaYli~r~g~l~ 518 (645)
T PRK14559 449 QDE-----LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQ--DTQ---VAVAHVGDSRLYRVTRKGGLE 518 (645)
T ss_pred ccc-----ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEE--CCE---EEEEEecCceEEEEecCCeEE
Confidence 111 123567888998888888532 357777766664 333 67999999999988 578999
Q ss_pred eecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcc
Q 008015 436 KMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFW 515 (581)
Q Consensus 436 ~LT~DH~~~~~~E~~RI~~~gg~i~~~~~Rv~Gl~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlw 515 (581)
+||+||++.+.+.+.++.... ...|..+..+|||||+...+. .+|++. .+...++++|||||||||
T Consensus 519 QLT~DHs~~~~lv~~Gi~~~~-----a~~~p~~~~LTrALG~~~~~~------l~Pdi~---~~~L~~gD~lLLCSDGL~ 584 (645)
T PRK14559 519 QLTVDHEVGQREIQRGVEPQI-----AYARPDAYQLTQALGPRDNSA------IQPDIQ---FLEIEEDTLLLLCSDGLS 584 (645)
T ss_pred EeCCCCCHHHHHHHhCCCHHH-----HhcCcccceeeeccCCCCCCc------ccceEE---EEEcCCCCEEEEECCCCC
Confidence 999999998765555442111 111334467999999865442 267775 344557899999999999
Q ss_pred ee--ccH---HHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcceee
Q 008015 516 DV--ISV---KKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRMS 576 (581)
Q Consensus 516 D~--ls~---~ei~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~~~ 576 (581)
|+ +.. +++..++.. ..+++++|++|++.|+.+|++||+|||||++...+..+
T Consensus 585 D~~~ve~~~~~~l~~il~~---------~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 585 DNDLLETHWQTHLLPLLSS---------SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQLS 641 (645)
T ss_pred CCcccchHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCCC
Confidence 94 443 233334432 45789999999999999999999999999998887654
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9.3e-34 Score=284.30 Aligned_cols=235 Identities=34% Similarity=0.542 Sum_probs=188.5
Q ss_pred hcCccCCCccceeeccCCC--CCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhh
Q 008015 312 RGAKKLPMEDVCYYHWPLP--GFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTE 389 (581)
Q Consensus 312 rgG~R~~nED~~~~~~~~~--~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~ 389 (581)
.+|.|..|||++++..... ++.+|+|||||||+..|++|++.+++.+.+.+..... .....+...|+++|..++
T Consensus 8 ~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 83 (254)
T cd00143 8 KGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT----LSEEDIEEALRKAFLRAD 83 (254)
T ss_pred CCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc----cchHHHHHHHHHHHHHHH
Confidence 3688999999998875443 6789999999999999999999999999887754321 112346678999999998
Q ss_pred hhhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCC
Q 008015 390 ASMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKD 461 (581)
Q Consensus 390 ~~i~~~--------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~ 461 (581)
+.+... ..|||++++++. ++. ++++|+||||+|++++++++++|.||++.++.++.|+...++....
T Consensus 84 ~~l~~~~~~~~~~~~~gtT~~~~~~~--~~~---l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 158 (254)
T cd00143 84 EEILEEAQDEPDDARSGTTAVVALIR--GNK---LYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN 158 (254)
T ss_pred HHHHHhhhhccCCCCCCCcEEEEEEE--CCE---EEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe
Confidence 887543 457777666664 332 6799999999999999999999999999998899999888776432
Q ss_pred CCeeeec-chhhhhhhhhhhhccccccCCCCCccceeeecc-cccceeeeccCCcceeccHHHHHHHHHHHhhhhccccc
Q 008015 462 GETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQ-ASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKE 539 (581)
Q Consensus 462 ~~~Rv~G-l~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~-~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~ 539 (581)
. +..+ ..+||+||+..+|. .+..+|++. .+.. .++++||||||||||+++++++.+++..... .
T Consensus 159 ~--~~~~~~~~t~~lG~~~~~~---~~~~~~~~~---~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~------~ 224 (254)
T cd00143 159 G--RVPGVLAVTRALGDFDLKP---GVSAEPDVT---VVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELA------K 224 (254)
T ss_pred C--EEcCceeeccccCCccccC---CEEcCCeEE---EEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhc------c
Confidence 1 3344 78999999987772 356678776 2333 5789999999999999999999999987310 0
Q ss_pred chHHHHHHHHhhhhhhccccCCceEEEEec
Q 008015 540 NSTEKIANVLLSEARTLRTKDNTSIIFLDF 569 (581)
Q Consensus 540 ~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~ 569 (581)
.+++++|+.|++.|...++.||+|+|++.|
T Consensus 225 ~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 225 EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 268999999999999999999999999975
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-33 Score=291.49 Aligned_cols=227 Identities=30% Similarity=0.383 Sum_probs=174.6
Q ss_pred CccceeeccC-CCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhh-------------------------h
Q 008015 319 MEDVCYYHWP-LPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERL-------------------------L 372 (581)
Q Consensus 319 nED~~~~~~~-~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~-------------------------~ 372 (581)
-||++-+... ..++.|+||||||||.++++|.++.+..++...+......... .
T Consensus 85 ~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~ 164 (390)
T KOG0700|consen 85 EEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQ 164 (390)
T ss_pred ccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCc
Confidence 4787754433 4568899999999999999999999999998655442211100 0
Q ss_pred ccCChhHHHHHHhhhhhhhhhcc------------cccccEEEEEEEecCCcchhhcccccCCceeEEee---cC---ce
Q 008015 373 SQCDASDVLRDAFFQTEASMNHH------------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV---DG---KQ 434 (581)
Q Consensus 373 ~~~~~~~~L~~af~~~~~~i~~~------------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r---~g---~~ 434 (581)
....+.++|.+||.++++.+... .+|++++++++.... +||||+|||||+|.+ +| .+
T Consensus 165 ~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~-----LyVaN~GDSRAVLG~~~~~~~~~~A 239 (390)
T KOG0700|consen 165 RHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGD-----LYVANVGDSRAVLGVVENNGSWLVA 239 (390)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCe-----EEEEecCcchhhhceecCCCCeEEE
Confidence 02457789999999999988532 578888888775433 789999999999953 33 47
Q ss_pred eeecccccccchhhhhhhhhcCC----cCCCCCeeeec-chhhhhhhhhhhhcc------------------ccccCCCC
Q 008015 435 IKMSEDHRIASYSERLRIQETGE----PLKDGETRLCG-LNLARMLGDKFLKQQ------------------DARFSAEP 491 (581)
Q Consensus 435 ~~LT~DH~~~~~~E~~RI~~~gg----~i~~~~~Rv~G-l~vtRalGD~~~K~~------------------~~~vs~eP 491 (581)
+|||.||+..++.|+.||+..+- .+.+.-+|+.| |.+||||||.++|.. +|+++++|
T Consensus 240 ~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP 319 (390)
T KOG0700|consen 240 VQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEP 319 (390)
T ss_pred EecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccc
Confidence 89999999999999999987652 23344479999 999999999999975 48899999
Q ss_pred CccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhcc
Q 008015 492 YISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEARTLR 557 (581)
Q Consensus 492 ~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~g 557 (581)
.|.. +-..++|.|+|||||||||+|+++|++.+|..++... ..-+.+|+.|+++|+.+.
T Consensus 320 ~i~~--HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~-----~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 320 SITH--HKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK-----FPDGNPATHLIRHALGRA 378 (390)
T ss_pred eEEE--EEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC-----CCCCCHHHHHHHHHHhhh
Confidence 9983 3334568899999999999999999999999875431 223556778888876554
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2e-32 Score=275.54 Aligned_cols=233 Identities=37% Similarity=0.560 Sum_probs=187.2
Q ss_pred hcCccCCCccceeeccCC-CCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhh
Q 008015 312 RGAKKLPMEDVCYYHWPL-PGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEA 390 (581)
Q Consensus 312 rgG~R~~nED~~~~~~~~-~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~~ 390 (581)
++|.|..|||++++.... .+..+|+|||||||+.+++++++.+.+.+.+........ ...+.+.|++++..++.
T Consensus 13 ~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~ 87 (255)
T smart00332 13 MQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDE-----LEDVEEALRKAFLKTDE 87 (255)
T ss_pred CCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccc-----hhHHHHHHHHHHHHHHH
Confidence 479999999998876432 457899999999999999999999998887644322110 13467889999999998
Q ss_pred hhhcc--------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCCC
Q 008015 391 SMNHH--------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKDG 462 (581)
Q Consensus 391 ~i~~~--------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~~ 462 (581)
++... .+|||++++++. .++ ++++|+||||+|+++++++.+||+||++.++.|..||...++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~gtT~~~~~~~--~~~---l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~ 162 (255)
T smart00332 88 EILEELESLEEDAGSGSTAVVALIS--GNK---LYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVING 162 (255)
T ss_pred HHHHhhhhccCCCCCCccEEEEEEE--CCE---EEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECC
Confidence 88653 347777666664 333 67999999999999999999999999999999999998888776554
Q ss_pred Ceeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccch
Q 008015 463 ETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENS 541 (581)
Q Consensus 463 ~~Rv~G-l~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~ 541 (581)
+..+ ..+||++|+..+| +.+..+|++.. ..+ ..++++||||||||||+++++++.+++.+.... .+
T Consensus 163 --~~~~~~~lt~~~g~~~~~---~~i~~~p~~~~-~~~-~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~------~~ 229 (255)
T smart00332 163 --RVNGVLALSRAIGDFFLK---PYVSAEPDVTV-VEL-TEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK------SD 229 (255)
T ss_pred --eECCeEecccccCCHhhc---CCeEeeeEEEE-EEe-cCCCcEEEEECCccccCCCHHHHHHHHHHHhhc------CC
Confidence 5566 7899999998877 34677888863 222 357899999999999999999999999874211 25
Q ss_pred HHHHHHHHhhhhhhccccCCceEEEE
Q 008015 542 TEKIANVLLSEARTLRTKDNTSIIFL 567 (581)
Q Consensus 542 ~~~~A~~Lv~~A~~~gs~DNiTvIVV 567 (581)
+.++|+.|++.|..++..||+|+|||
T Consensus 230 ~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 230 PEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 89999999999999999999999986
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-28 Score=243.84 Aligned_cols=287 Identities=26% Similarity=0.371 Sum_probs=201.2
Q ss_pred CCeEEecccceEEEEEeeccceeccccccccCChhHHhhcCccCCCccceeec-----c---------CC----------
Q 008015 274 GDIITLGTTSSIHVQITSETVSQIPFGVGVASDPMALRRGAKKLPMEDVCYYH-----W---------PL---------- 329 (581)
Q Consensus 274 Gd~i~lG~~~~~~v~v~~qn~~~~~~~vg~asd~~~~~rgG~R~~nED~~~~~-----~---------~~---------- 329 (581)
.+.|.+......--..++....++|+.+|||+..++ |+-..|||-..+. . +.
T Consensus 51 ~~ei~~ssdh~~rpvl~~r~~~rmp~~~gyae~ina----gkt~~nedqas~~~l~~~~~~gs~t~~~n~n~~~~~~~l~ 126 (493)
T KOG1323|consen 51 EEEIALSSDHSVRPVLCPRFPHRMPLYVGYAEAINA----GKTVQNEDQASAKMLVLTQHQGSETRKRNSNENDDDPMLT 126 (493)
T ss_pred HHHhhhccCccccceeccCccccCchhhhHHHHhhc----CccccccccccceEEEEecccCccccCCCCCccccCcCCC
Confidence 344444433222222344444478999999998765 8888899964321 0 00
Q ss_pred C---------------CCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhh--------------------------
Q 008015 330 P---------------GFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKR-------------------------- 368 (581)
Q Consensus 330 ~---------------~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~-------------------------- 368 (581)
+ +.++|.+||||.|..+|-.|++.+.+.+...+.+....
T Consensus 127 ~g~~~~~k~~~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~ 206 (493)
T KOG1323|consen 127 PGGDDTVKSSMFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEM 206 (493)
T ss_pred CCCCcchhhcccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccc
Confidence 0 05799999999999999999999999987766532211
Q ss_pred ----hh-hhccCChhHHHHHHhhhhhhhhhcc------cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeee
Q 008015 369 ----ER-LLSQCDASDVLRDAFFQTEASMNHH------YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKM 437 (581)
Q Consensus 369 ----e~-~~~~~~~~~~L~~af~~~~~~i~~~------~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~L 437 (581)
|+ +-...-+..+|..||+.++++|... ..||||.++++...+ +|+||.|||||+++|+++++.|
T Consensus 207 ~~~~ek~Ir~E~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGK-----lYvaNAGDsRAIlVrndeirpl 281 (493)
T KOG1323|consen 207 SREDEKRIRHEHLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGK-----LYVANAGDSRAILVRNDEIRPL 281 (493)
T ss_pred cchhhccCchHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccc-----eEEccCCCceEEEEecCCeeec
Confidence 00 0011124568999999999998754 578998887776543 7899999999999999999999
Q ss_pred cccccccchhhhhhhhhcCC--------c------------------------------------------CC---CCCe
Q 008015 438 SEDHRIASYSERLRIQETGE--------P------------------------------------------LK---DGET 464 (581)
Q Consensus 438 T~DH~~~~~~E~~RI~~~gg--------~------------------------------------------i~---~~~~ 464 (581)
|++.+|. .||+|++.... . +- .-..
T Consensus 282 S~efTPe--tERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrka 359 (493)
T KOG1323|consen 282 SKEFTPE--TERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKA 359 (493)
T ss_pred ccccCcH--HHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhh
Confidence 9999875 67888754321 0 00 0012
Q ss_pred eeec-chhhhhhhhhhhhccc------cccCCCCCccceeeec---ccccceeeeccCCcceeccHHHHHHHHHHHhhhh
Q 008015 465 RLCG-LNLARMLGDKFLKQQD------ARFSAEPYISPVVHID---QASKAFALLASDGFWDVISVKKAIQLVVQMREKY 534 (581)
Q Consensus 465 Rv~G-l~vtRalGD~~~K~~~------~~vs~eP~I~~~~~i~---~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~ 534 (581)
|+.+ +.+||.|||.++|-.+ |.+++.|+|.. +.+. ...||.+|||||||||+++++|++.++++.+...
T Consensus 360 Rll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V-~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~ 438 (493)
T KOG1323|consen 360 RLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRV-YDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPST 438 (493)
T ss_pred hhhhhheeccccCcceeeeecCCcccchhhhcCCeeEE-EehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCC
Confidence 5666 7999999999998764 56677777762 2222 2367899999999999999999999999976554
Q ss_pred cccccchHHHHHHHHhhhhhh-------------ccccCCceEEEEecCCc
Q 008015 535 SADKENSTEKIANVLLSEART-------------LRTKDNTSIIFLDFDST 572 (581)
Q Consensus 535 ~~~~~~~~~~~A~~Lv~~A~~-------------~gs~DNiTvIVV~~~~~ 572 (581)
.+....-...+|+.|+..|.. .++-|||||.||-+...
T Consensus 439 dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 439 DPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYC 489 (493)
T ss_pred CCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCC
Confidence 322122245678888877732 24679999999988654
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.86 E-value=6.7e-21 Score=191.21 Aligned_cols=216 Identities=19% Similarity=0.250 Sum_probs=144.7
Q ss_pred CccceeeccCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhhhccccc
Q 008015 319 MEDVCYYHWPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHHYEG 398 (581)
Q Consensus 319 nED~~~~~~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~~~i~~~~~G 398 (581)
-||++|+.. .....+.|||||+|||.--.+-+..+...|.+....... +......++..+|.+||.++-.+-.-.-..
T Consensus 91 GEDa~Fvss-~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~-~~~~~~~~P~~lL~~ay~~l~~~~~~~vGS 168 (330)
T KOG1379|consen 91 GEDAWFVSS-NPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQ-NSDFNPSDPVNLLEKAYAELKSQKVPIVGS 168 (330)
T ss_pred CCcceeecc-CcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhc-ccccCCCChHHHHHHHHHHHhhcCCCCCCc
Confidence 499999863 355778999999999976555444444444433332221 122335688999999998775542222355
Q ss_pred ccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhhhhhh
Q 008015 399 CTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDK 478 (581)
Q Consensus 399 sTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~~~~Rv~Gl~vtRalGD~ 478 (581)
|||+++.+..++.+ ||+||+|||.+.++|+|+++.-|..+...-. .|. +++ ++-.
T Consensus 169 STAcI~~l~~~~~~---Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN----------~Py----------QLs--~~p~ 223 (330)
T KOG1379|consen 169 STACILALDRENGK---LHTANLGDSGFLVVREGKVVFRSPEQQHYFN----------TPY----------QLS--SPPE 223 (330)
T ss_pred ceeeeeeeecCCCe---EEEeeccCcceEEEECCEEEEcCchheeccC----------Cce----------eec--cCCc
Confidence 66666655432333 6799999999999999999998876532210 000 000 0000
Q ss_pred hhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhhc--
Q 008015 479 FLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEARTL-- 556 (581)
Q Consensus 479 ~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~-- 556 (581)
.+ ..++...|+..+.+.+...++|.||||||||||+|.+++|..++.....+. ..+++..|+.|++.|...
T Consensus 224 ~~---~~~~~d~p~~ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~----~~~lq~~A~~ia~~Ar~ls~ 296 (330)
T KOG1379|consen 224 GY---SSYISDVPDSADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDARG----NLDLQVTAQKIAEKARELSR 296 (330)
T ss_pred cc---cccccCCccccceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhccc----cccHHHHHHHHHHHHHHhcc
Confidence 00 112344677777778888899999999999999999999999998865431 456888888888887443
Q ss_pred ---------------------cccCCceEEEEe
Q 008015 557 ---------------------RTKDNTSIIFLD 568 (581)
Q Consensus 557 ---------------------gs~DNiTvIVV~ 568 (581)
|..|+|||||..
T Consensus 297 d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 297 DPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred CcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 336999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-17 Score=187.04 Aligned_cols=250 Identities=18% Similarity=0.246 Sum_probs=190.3
Q ss_pred ccccccccCChhHHhhcCccCCCccceeec--cCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhcc
Q 008015 297 IPFGVGVASDPMALRRGAKKLPMEDVCYYH--WPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQ 374 (581)
Q Consensus 297 ~~~~vg~asd~~~~~rgG~R~~nED~~~~~--~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~ 374 (581)
.-|.+|++... |.|..+-=+.... ......+.||.+||-+......+....+..++.+.++...
T Consensus 520 ~~~t~Gv~~~~------gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~-------- 585 (1081)
T KOG0618|consen 520 FLWTYGVAGVS------GQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG-------- 585 (1081)
T ss_pred eheeeccchhc------ccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc--------
Confidence 34567777654 5554433222111 1122377899999999988888877777777776655432
Q ss_pred CChhHHHHHHhhhhhhhhhcc--cccccEEEEEEEecC---CcchhhcccccCCceeEEeecCceeeecccc-cccchhh
Q 008015 375 CDASDVLRDAFFQTEASMNHH--YEGCTATVLLVWADG---NANIFAQCANVGDSACVMNVDGKQIKMSEDH-RIASYSE 448 (581)
Q Consensus 375 ~~~~~~L~~af~~~~~~i~~~--~~GsTatv~li~~~~---~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH-~~~~~~E 448 (581)
+-.+.|+.+|...+.++... .-|..++.+.+..+. ....++.+||+|+|.++++++|+..++|+-. -...++|
T Consensus 586 -~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE 664 (1081)
T KOG0618|consen 586 -NETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREE 664 (1081)
T ss_pred -ChHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHH
Confidence 23455999999999988654 445566666665433 1223467999999999999999999988765 3448899
Q ss_pred hhhhhhcCCcCC-CCCeeeec-chhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHH
Q 008015 449 RLRIQETGEPLK-DGETRLCG-LNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQL 526 (581)
Q Consensus 449 ~~RI~~~gg~i~-~~~~Rv~G-l~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~i 526 (581)
.+||...+|++. ++ +++| ...||++|-+.... .|-+.|+|.. .+....|+|||+|+-++|++|+-+++++.
T Consensus 665 ~~RI~~~~g~i~ed~--k~ngvt~~tR~iG~~~l~P---~v~p~Phv~~--~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~ 737 (1081)
T KOG0618|consen 665 YKRIVDSKGFITEDN--KLNGVTSSTRAIGPFSLFP---HVLPDPHVSV--VILTEQDEFLIVGNKQLWSVLSIDTAVDA 737 (1081)
T ss_pred HHHHHHhcCeecCCC--eeeceeeeeeecccccccc---cccCCCceee--EecccCceEEEEcchHHhhhccHHHHHHH
Confidence 999999999997 55 8899 78999999876653 4788999984 34445789999999999999999999999
Q ss_pred HHHHhhhhcccccchHHHHHHHHhhhhhhccccCCceEEEEecCCcceeee
Q 008015 527 VVQMREKYSADKENSTEKIANVLLSEARTLRTKDNTSIIFLDFDSTFRMSC 577 (581)
Q Consensus 527 v~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~gs~DNiTvIVV~~~~~~~~~~ 577 (581)
+++ ..+|-.+|++|++.|.+.|..||++|+||++.......|
T Consensus 738 vRn---------~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~~~~ 779 (1081)
T KOG0618|consen 738 VRN---------VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEECVD 779 (1081)
T ss_pred Hhc---------CCchHHHHHHHHHHHHhcccccCeeEEEEEeecchhhcc
Confidence 986 578999999999999999999999999999987665443
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.65 E-value=2.5e-16 Score=154.85 Aligned_cols=180 Identities=21% Similarity=0.262 Sum_probs=94.8
Q ss_pred cCccCCCccceeeccCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhh-h---
Q 008015 313 GAKKLPMEDVCYYHWPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQ-T--- 388 (581)
Q Consensus 313 gG~R~~nED~~~~~~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~-~--- 388 (581)
.|.+..|||++.+... .+..+++||||+||...++.+|+.+++.+.+.+......+.......+...+.+.+.. +
T Consensus 6 ~~~~~~nqD~~~~~~~-~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T PF13672_consen 6 RGRGAPNQDAFGIRTD-DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIVRAF 84 (212)
T ss_dssp -TTSSS--EEEEEE-T-CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCCCCCCEEeeeC-CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 3778999999986533 5566779999999999999999999999988887654432211011111222222211 0
Q ss_pred -h---hhhhcccccccEEEEEEEecCCcchhhcccccCCceeEE-eecCceeeecccccccchhhhhhhhhcCCcCCCCC
Q 008015 389 -E---ASMNHHYEGCTATVLLVWADGNANIFAQCANVGDSACVM-NVDGKQIKMSEDHRIASYSERLRIQETGEPLKDGE 463 (581)
Q Consensus 389 -~---~~i~~~~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl-~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~~~ 463 (581)
. ........+||++++++. ++. ++++|+||||+|+ .++|++..++.+|+.....+
T Consensus 85 ~~~~~~~~~~~~~~tTl~~~v~~--~~~---~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~--------------- 144 (212)
T PF13672_consen 85 QSAKQADLELRDYGTTLLALVID--PDK---VYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQ--------------- 144 (212)
T ss_dssp -HHHHHSGGGTT-EE-EEEEEEE--TTE---EEEEEESS-EEEEEEETTEEEE-S---BHHHHHC---------------
T ss_pred hhhhhccccccccCceEEEEEEE--CCE---EEEEEECCCeEEEEECCCEEEEcCCCccchhhhh---------------
Confidence 0 111111445555555543 333 5689999999965 68999999999996322111
Q ss_pred eeeecchhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHH-HHHHHHHHh
Q 008015 464 TRLCGLNLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-AIQLVVQMR 531 (581)
Q Consensus 464 ~Rv~Gl~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~e-i~~iv~~~~ 531 (581)
++.+... ...+.+. ...+....++.|+|||||||+.+...+ +..++.+.+
T Consensus 145 --------~~~~~~~---------~~~~~~~-~~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 145 --------TRSLTGD---------DPEPDVQ-YGSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp --------TTSCCHH---------CCCTETE-EEEEE--TT-EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred --------hhccCcc---------ccccCCe-EEEEEcCCCCEEEEECcCccccCCCHHHHHHHhhhcc
Confidence 0011100 0112221 112444568999999999999998655 777776654
No 16
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.63 E-value=2.2e-16 Score=127.29 Aligned_cols=68 Identities=38% Similarity=0.728 Sum_probs=62.0
Q ss_pred eeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEec
Q 008015 204 LTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (581)
Q Consensus 204 ~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG 280 (581)
++|||.+.|||+++++.|||+||.|.+..+ +.|+|+|++|+|||||||+++.. +.+++|.+||+|+||
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~--------~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGP--------GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESS--------TSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCC--------CCEEECCCCCEEEcC
Confidence 589999999999999999999999999887 68999999999999999999984 677999999999998
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.57 E-value=4.1e-14 Score=137.00 Aligned_cols=172 Identities=20% Similarity=0.157 Sum_probs=115.4
Q ss_pred CccceeeccCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhhhcc---
Q 008015 319 MEDVCYYHWPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHH--- 395 (581)
Q Consensus 319 nED~~~~~~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~~~i~~~--- 395 (581)
.-|.|.+....++..+|+|+||||+...|.+++..+...+.+.+... .. +.+.+..+++.+...
T Consensus 17 ~GD~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~---------~~----~~~~l~~~n~~l~~~~~~ 83 (193)
T smart00331 17 GGDFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG---------IS----LSQILERLNRAIYENGED 83 (193)
T ss_pred CccEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC---------CC----HHHHHHHHHHHHHhcCCC
Confidence 35888665444557899999999999999999999888887765431 12 233344444444332
Q ss_pred cccccEEEEEEEecCCcchhhcccccCCceeEEee-cCceeeecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhh
Q 008015 396 YEGCTATVLLVWADGNANIFAQCANVGDSACVMNV-DGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARM 474 (581)
Q Consensus 396 ~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r-~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~~~~Rv~Gl~vtRa 474 (581)
..|+|++++.+...+++ ++++|+||+|+|+++ ++...+++.+.. +..|+.
T Consensus 84 ~~~~T~~~~~id~~~~~---l~~~~~Gd~~~~~~~~~~~~~~~~~~~~----------------------~~lG~~---- 134 (193)
T smart00331 84 GMFATLFLALYDFAGGT---LSYANAGHSPPYLLRADGGLVEDLDDLG----------------------APLGLE---- 134 (193)
T ss_pred CcEEEEEEEEEECCCCE---EEEEeCCCCceEEEECCCCeEEEcCCCC----------------------ceeeeC----
Confidence 35677766666434443 568999999999998 666666665421 223320
Q ss_pred hhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhh
Q 008015 475 LGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEAR 554 (581)
Q Consensus 475 lGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~ei~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~ 554 (581)
. ..++++. .+...++|.|+|+||||||.++.+++.+++.+.. ..++++++++|++.+.
T Consensus 135 ----~--------~~~~~~~---~~~l~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~-------~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 135 ----P--------DVEVDVR---ELTLEPGDLLLLYTDGLTEARNPERLEELLEELL-------GSPPAEIAQRILEELL 192 (193)
T ss_pred ----C--------CCcceeE---EEeeCCCCEEEEECCCccccCChHHHHHHHHHhc-------CCCHHHHHHHHHHHHh
Confidence 0 0112222 4556678999999999999999999999998742 3468888888877653
No 18
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.43 E-value=2.2e-12 Score=149.24 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=126.7
Q ss_pred cCccCCCccceeeccCCCCCceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhh
Q 008015 313 GAKKLPMEDVCYYHWPLPGFGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASM 392 (581)
Q Consensus 313 gG~R~~nED~~~~~~~~~~~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~~~i 392 (581)
++.+..+.|.|.+....++..+++|+||+|....|..++..+.+.+.+.+.... ++ ..++..+|..+
T Consensus 561 k~g~~vsGD~y~~~~l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~---------~~----~~ai~~lN~~L 627 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF---------DR----EVAIKTVNSIL 627 (764)
T ss_pred CCCCcccCceEEEEEECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC---------CH----HHHHHHHHHHH
Confidence 355678899987654445567899999999777777888888887766553321 11 23333444433
Q ss_pred hcc---cccccEEEEEEEecCCcchhhcccccCCceeEEeecCceeeecccccccchhhhhhhhhcCCcCCCCCeeeecc
Q 008015 393 NHH---YEGCTATVLLVWADGNANIFAQCANVGDSACVMNVDGKQIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGL 469 (581)
Q Consensus 393 ~~~---~~GsTatv~li~~~~~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~i~~~~~Rv~Gl 469 (581)
... ...+|+.++.+.....+ +.++|+|+++.|+.+++++..++..+.| .|+
T Consensus 628 ~~~~~~~~faTl~l~~IDl~~g~---~~~~~aG~~p~~i~r~~~v~~i~s~~lP-----------------------lGi 681 (764)
T TIGR02865 628 SLRSTDEKFSTLDLSVIDLYTGQ---AEFVKVGAVPSFIKRGAKVEVIRSSNLP-----------------------IGI 681 (764)
T ss_pred HhCCCCCeEEEEEEEEEECCCCe---EEEEecCCCceEEEECCEEEEecCCCce-----------------------eEe
Confidence 221 23456666665444433 4579999999999999988877653322 221
Q ss_pred hhhhhhhhhhhhccccccCCCCCccceeeecccccceeeeccCCcceeccHHH-----HHHHHHHHhhhhcccccchHHH
Q 008015 470 NLARMLGDKFLKQQDARFSAEPYISPVVHIDQASKAFALLASDGFWDVISVKK-----AIQLVVQMREKYSADKENSTEK 544 (581)
Q Consensus 470 ~vtRalGD~~~K~~~~~vs~eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~e-----i~~iv~~~~~~~~~~~~~~~~~ 544 (581)
..++++. .......+||+|+|+|||+||..++++ +.+++.+.. ..++++
T Consensus 682 ------------------l~~~~~~-~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~-------~~~p~e 735 (764)
T TIGR02865 682 ------------------LDEVDVE-LVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETN-------TNDPEE 735 (764)
T ss_pred ------------------ccCCccc-eEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHhcC-------CCCHHH
Confidence 0122222 124556689999999999999887543 455554321 357899
Q ss_pred HHHHHhhhhhhcc---ccCCceEEEEec
Q 008015 545 IANVLLSEARTLR---TKDNTSIIFLDF 569 (581)
Q Consensus 545 ~A~~Lv~~A~~~g---s~DNiTvIVV~~ 569 (581)
+++.|++.|.... ..||+|++++++
T Consensus 736 la~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 736 IAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 9999999987543 479999999986
No 19
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.40 E-value=1.2e-12 Score=113.06 Aligned_cols=89 Identities=39% Similarity=0.673 Sum_probs=80.5
Q ss_pred EEEEEeecCCCceeeeeec-cCCCCcceeecCcCCC-cceeeccccccceeEEecCC-CCceeeEEeccccccccccccc
Q 008015 178 LSLEVVSGPSRGIRCSVQS-ANASRLPLTLGRVSPS-DVLLKDSEVSGKHALINWNP-NKLKWELVDMGSLNGTLLNSQP 254 (581)
Q Consensus 178 ~~L~v~~g~~~g~~~~l~~-~~~~~~~~~iGR~~~~-di~l~d~~VSr~Ha~I~~~~-~~~~~~l~DlgS~NGT~vng~~ 254 (581)
+.|.+..++..+..+.|.. . .++|||.+.| ++.++++.|||+||.|.+.. + .|++.|+.|.||||||+++
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~-----~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~~vn~~~ 74 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGG-----TYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGTFVNGQR 74 (102)
T ss_pred eEEEEecCCCceeEEEECCCC-----eEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCeEECCEE
Confidence 4678888877888999998 5 7999999999 99999999999999999999 5 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEecc
Q 008015 255 INHPDSGSRHWGKPMELTSGDIITLGT 281 (581)
Q Consensus 255 i~~p~~~~~~~g~~~~L~~Gd~i~lG~ 281 (581)
+.. +.+..|.+||.|.+|.
T Consensus 75 ~~~--------~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 75 VSP--------GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CCC--------CCcEECCCCCEEEECC
Confidence 884 3469999999999995
No 20
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.39 E-value=6.8e-13 Score=142.22 Aligned_cols=94 Identities=33% Similarity=0.526 Sum_probs=81.6
Q ss_pred EEEEeec----CCCceeeeeeccCCCCcceeecCcCCCcceeeccc--cccceeEEecCCCCceeeEEecccccccccc-
Q 008015 179 SLEVVSG----PSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSE--VSGKHALINWNPNKLKWELVDMGSLNGTLLN- 251 (581)
Q Consensus 179 ~L~v~~g----~~~g~~~~l~~~~~~~~~~~iGR~~~~di~l~d~~--VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn- 251 (581)
.|.|+.. +..+..+.+... ..+|||++.||++|+|+. ||++||+|.+.++ .|+|+|+ |+||||||
T Consensus 2 ~L~v~n~~~l~~g~~~~~~f~~~-----~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~Dl-StNGT~VN~ 73 (396)
T TIGR03354 2 VLTVLNAHQLTPGIAAQKTFGTN-----GGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDL-STNGVFLNG 73 (396)
T ss_pred EEEEeccccCCCCcceEEEECCC-----CEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEEC-CCCCeEECC
Confidence 4666643 235678888887 799999999999999988 9999999999987 9999999 99999999
Q ss_pred -cccCCCCCCCCCCCCCCcccCCCCeEEecccceEEEE
Q 008015 252 -SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQ 288 (581)
Q Consensus 252 -g~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v~ 288 (581)
|.++.. |.++.|.+||+|+||.+.+++..
T Consensus 74 sg~~l~~--------~~~~~L~~GD~I~iG~~~lrv~~ 103 (396)
T TIGR03354 74 SGSPLGR--------GNPVRLEQGDRLRLGDYEIRVSL 103 (396)
T ss_pred CCCCCCC--------CCceEcCCCCEEEECCEEEEEEe
Confidence 888884 56799999999999999988765
No 21
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.37 E-value=9.3e-13 Score=148.97 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=79.9
Q ss_pred cceEEEEEeecCCC-ceeeeeeccCCCCcceeecCcCCCcc-----eeeccccccceeEEecCCCCceeeEEeccccccc
Q 008015 175 RSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVSPSDV-----LLKDSEVSGKHALINWNPNKLKWELVDMGSLNGT 248 (581)
Q Consensus 175 ~~~~~L~v~~g~~~-g~~~~l~~~~~~~~~~~iGR~~~~di-----~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT 248 (581)
...|+|+....... -+.++|..+. ..|++|||.+.||+ +|+++.||++||+|.+.++ .|+|+||+|+|||
T Consensus 531 ~~~w~l~~~~~~~~~~~~~~l~~~~--~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~--~~~~~Dl~S~nGT 606 (668)
T PLN02927 531 KGEWYLIPHGDDCCVSETLCLTKDE--DQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG--AFFLMDLRSEHGT 606 (668)
T ss_pred cCCeEEEecCCCCcccceeeeecCC--CCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC--EEEEEECCCCCcc
Confidence 44688888754433 3457773221 23899999999996 9999999999999999998 9999999999999
Q ss_pred cccccc---CCCCCCCCCCCCCCcccCCCCeEEecccc
Q 008015 249 LLNSQP---INHPDSGSRHWGKPMELTSGDIITLGTTS 283 (581)
Q Consensus 249 ~vng~~---i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~ 283 (581)
||||.+ +..| |+.++.|++||+|+||...
T Consensus 607 ~v~~~~~~r~~~~------p~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 607 YVTDNEGRRYRAT------PNFPARFRSSDIIEFGSDK 638 (668)
T ss_pred EEeCCCCceEecC------CCCceEeCCCCEEEeCCCc
Confidence 997766 6532 5678999999999999964
No 22
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.29 E-value=6.2e-12 Score=121.69 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=66.8
Q ss_pred ceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEeccc
Q 008015 203 PLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTT 282 (581)
Q Consensus 203 ~~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~ 282 (581)
.++|||+++++++++|..|||+||.|.++++ .|+++|++|+|||||||+++.. ...|.+||.|.+|.+
T Consensus 90 ~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~--~~~~~d~~S~nGt~vn~~~v~~----------~~~l~~gd~i~i~~~ 157 (191)
T COG1716 90 VTTIGRDPDNDIVLDDDVVSRRHAELRREGN--EVFLEDLGSTNGTYVNGEKVRQ----------RVLLQDGDVIRLGGT 157 (191)
T ss_pred eEEeccCCCCCEEcCCCccccceEEEEEeCC--ceEEEECCCCcceEECCeEccC----------cEEcCCCCEEEECcc
Confidence 5999999999999999999999999999999 9999999999999999999994 388999999999999
Q ss_pred ce
Q 008015 283 SS 284 (581)
Q Consensus 283 ~~ 284 (581)
..
T Consensus 158 ~~ 159 (191)
T COG1716 158 LA 159 (191)
T ss_pred ce
Confidence 88
No 23
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.16 E-value=2.2e-11 Score=92.50 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=47.0
Q ss_pred eeecCcC-CCcceeeccccccceeEEecCCCCceeeEEecccccccccccccC
Q 008015 204 LTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (581)
Q Consensus 204 ~~iGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i 255 (581)
++|||.+ .|+++++++.||+.||+|.++.+ +.|+|.|++|+|||||||+++
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-CeEEEEECCCCCCeeECCEEC
Confidence 4799999 99999999999999999999988 249999999999999999875
No 24
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-11 Score=118.60 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=89.7
Q ss_pred chhhccccceEEEEEeecCCCceeeeeeccCCCCcceeecCcC-CCcceeeccccccceeEEecCC------C-----Cc
Q 008015 168 PKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNP------N-----KL 235 (581)
Q Consensus 168 p~~~~~~~~~~~L~v~~g~~~g~~~~l~~~~~~~~~~~iGR~~-~~di~l~d~~VSr~Ha~I~~~~------~-----~~ 235 (581)
|+.+..+...|.|....+...+...-++..+ .+++||.. -.||.++++++|++||.|.+.. + .-
T Consensus 164 ppearkP~kRwrLy~fk~~e~l~~l~iHrqs----~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrv 239 (293)
T KOG1882|consen 164 PPEARKPKKRWRLYPFKCYEVLPVLYIHRQS----CYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRV 239 (293)
T ss_pred CchhcCchhheecccccCCcccchheeeeee----eeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceee
Confidence 6666767778999999998888777777765 59999975 7899999999999999999863 1 13
Q ss_pred eeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 236 KWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 236 ~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
..||.||||.||||||.+.|.. ...++|..+|+|+||-.+-.++
T Consensus 240 kpYiiDLgS~NgTfLNnk~Iep--------qRYyEL~ekDvlkfgfs~rEyv 283 (293)
T KOG1882|consen 240 KPYIIDLGSGNGTFLNNKVIEP--------QRYYELREKDVLKFGFSSREYV 283 (293)
T ss_pred eeEEEecCCCCcceecCcccCc--------hheeeeecCceeeeccchHHHH
Confidence 5889999999999999999984 5679999999999996654443
No 25
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.15 E-value=7.5e-11 Score=129.47 Aligned_cols=118 Identities=21% Similarity=0.330 Sum_probs=94.2
Q ss_pred CCccchhhccccceEEEEEeecCCCceeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCce-------
Q 008015 164 PEFLPKAIADQRSCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLK------- 236 (581)
Q Consensus 164 ~~~~p~~~~~~~~~~~L~v~~g~~~g~~~~l~~~~~~~~~~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~------- 236 (581)
...+|+=.+++...+.|+++.+...-....|.... .++|||...||+.+.++.|||.||.|.+...+..
T Consensus 143 py~vppw~~P~~~~~~lEvlKeg~iiet~~l~~~~----~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~ 218 (793)
T KOG1881|consen 143 PYEVPPWSGPPAAIFQLEVLKEGAIIETEDLKGAA----ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNG 218 (793)
T ss_pred cccCCCCCCCcccchhhhhhccCceeeeeecccce----eEEecccCCCccccccCcccccceeeeccCCCCCccccCCC
Confidence 33344434555557789999877666666666553 6999999999999999999999999999765434
Q ss_pred --eeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEEEEeecc
Q 008015 237 --WELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQITSET 293 (581)
Q Consensus 237 --~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v~v~~qn 293 (581)
|+|.|||||+|||+|..++..+ .+..+.-|+++++|..++.|....+..
T Consensus 219 ~g~~i~dlgsThgt~~NK~rvppk--------~yir~~Vg~v~~fggsTrl~i~Qgp~e 269 (793)
T KOG1881|consen 219 EGWYIYDLGSTHGTFLNKDRVPPK--------VYIRDRVGHVARFGGSTRLYIFQGPEE 269 (793)
T ss_pred CceEEeeccccccceeccccCCCc--------chhhhhHHHHHHhcCceEEEEeeCCCc
Confidence 9999999999999999999952 347899999999999998877655544
No 26
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.14 E-value=3.8e-10 Score=108.90 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=101.8
Q ss_pred CceeeeccCCCcchhhhhhhhhhHHHHHHHhhhhhhhhhhhccCChhHHHHHHhhhhhhhhhcccccccEEEEEEEecCC
Q 008015 332 FGLFGICDGHGGSAAAKSASEILPKMVAAILSDSLKRERLLSQCDASDVLRDAFFQTEASMNHHYEGCTATVLLVWADGN 411 (581)
Q Consensus 332 ~~lfgV~DGhGG~~~~~~as~~l~~~l~~~l~~~~~~e~~~~~~~~~~~L~~af~~~~~~i~~~~~GsTatv~li~~~~~ 411 (581)
..++.|+|++|..-.|.+.+..+...+....... .++.+++...-..+...+......+|++++.+....+
T Consensus 4 ~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~---------~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~ 74 (193)
T PF07228_consen 4 RYFIIVGDVSGHGVSAALLSAALASAIRELLDEG---------LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETG 74 (193)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT---------TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTT
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHhhhccccceEEEEEecccce
Confidence 4567899999966566666666666666554321 1233333333322222222212345555555443333
Q ss_pred cchhhcccccCCceeEEeecCc--eeeecccccccchhhhhhhhhcCCcCCCCCeeeecchhhhhhhhhhhhccccccCC
Q 008015 412 ANIFAQCANVGDSACVMNVDGK--QIKMSEDHRIASYSERLRIQETGEPLKDGETRLCGLNLARMLGDKFLKQQDARFSA 489 (581)
Q Consensus 412 ~~~~l~vaNVGDSRayl~r~g~--~~~LT~DH~~~~~~E~~RI~~~gg~i~~~~~Rv~Gl~vtRalGD~~~K~~~~~vs~ 489 (581)
. ++++|+|+++++++++++ ...+.....+ .|+ ..
T Consensus 75 ~---l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-----------------------lG~------------------~~ 110 (193)
T PF07228_consen 75 T---LTYANAGHPPPLLLRPGGREIEQLESEGPP-----------------------LGI------------------FE 110 (193)
T ss_dssp E---EEEEEESSSEEEEEETTCTEEEEETCSSBB-----------------------CSS------------------SC
T ss_pred E---EEEeCCCCCCEEEEeccccceeecccCccc-----------------------eee------------------ec
Confidence 3 568999999999999843 3333221111 121 01
Q ss_pred CCCccceeeecccccceeeeccCCcceeccHHH-------HHHHHHHHhhhhcccccchHHHHHHHHhhhhhhc---ccc
Q 008015 490 EPYISPVVHIDQASKAFALLASDGFWDVISVKK-------AIQLVVQMREKYSADKENSTEKIANVLLSEARTL---RTK 559 (581)
Q Consensus 490 eP~I~~~~~i~~~~~d~lVLaSDGlwD~ls~~e-------i~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~~---gs~ 559 (581)
+..+. ...+...++|.|+|+||||+|....+. +.+++.+. ...+++++++.|++.+... ...
T Consensus 111 ~~~~~-~~~~~l~~gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (193)
T PF07228_consen 111 DIDYQ-EQEIQLEPGDRLLLYTDGLFEALNEDGEFFGEERLLELLDEN-------RGLSPQEIIDALLEAIDRFGKGPLR 182 (193)
T ss_dssp TTCEE-EEEEE--TTEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH-------TTS-HHHHHHHHHHHHHHHTTSSTS
T ss_pred ccccc-ceEEEeccccEEEEeCCChhhccCCccchhHHHHHHHHHhhc-------cCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 11222 224566689999999999999985443 23444322 1467899999999988763 478
Q ss_pred CCceEEEEecC
Q 008015 560 DNTSIIFLDFD 570 (581)
Q Consensus 560 DNiTvIVV~~~ 570 (581)
||+|+++++++
T Consensus 183 DD~tvl~~~~~ 193 (193)
T PF07228_consen 183 DDITVLVIRRQ 193 (193)
T ss_dssp S-EEEEEEEE-
T ss_pred CceEEEEEEEC
Confidence 99999999874
No 27
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.01 E-value=6.1e-10 Score=116.57 Aligned_cols=95 Identities=26% Similarity=0.320 Sum_probs=76.7
Q ss_pred EEEEEeecC--CCc--eeeeeeccCCCCcceeecCcCCCcceeec--cccccceeEEecCCCCceeeEEecccccccccc
Q 008015 178 LSLEVVSGP--SRG--IRCSVQSANASRLPLTLGRVSPSDVLLKD--SEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (581)
Q Consensus 178 ~~L~v~~g~--~~g--~~~~l~~~~~~~~~~~iGR~~~~di~l~d--~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn 251 (581)
++|.++... ..| ....+..+ ..+|||+++||+.|+| ..||++||+|.++.+ .|+|.|. |.||||||
T Consensus 3 lsL~vtn~~~l~sG~~aq~~f~~~-----~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg--~f~L~Dt-S~g~l~VN 74 (430)
T COG3456 3 LSLQVTNAQKLESGKAAQKLFDRG-----GGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG--GFCLTDT-SNGGLLVN 74 (430)
T ss_pred eEEEEeccccCCCchhhhhhhhcC-----CcccccCCCCCccccCcccccchhheEEEecCC--eEEEEec-CCCceeec
Confidence 456665332 223 34445555 5899999999999998 799999999999999 9999997 68999999
Q ss_pred cccCCCCCCCCCCCCCC-cccCCCCeEEecccceEEEE
Q 008015 252 SQPINHPDSGSRHWGKP-MELTSGDIITLGTTSSIHVQ 288 (581)
Q Consensus 252 g~~i~~p~~~~~~~g~~-~~L~~Gd~i~lG~~~~~~v~ 288 (581)
|..+.. |.+ .+|+.||.|.||.+.+++.-
T Consensus 75 gs~~~~--------g~~~~RLqqGd~i~iG~y~i~V~l 104 (430)
T COG3456 75 GSDLPL--------GEGSARLQQGDEILIGRYIIRVHL 104 (430)
T ss_pred ccccCC--------CCCccccccCCEEeeccEEEEEEe
Confidence 988775 455 89999999999999887654
No 28
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.44 E-value=1.1e-07 Score=95.25 Aligned_cols=109 Identities=24% Similarity=0.387 Sum_probs=86.6
Q ss_pred ccchhh-ccccceEEEEEeecCCC-ceeeeeeccCCCCcceeecCcC-CCcceeeccccccceeEEecCCCCceeeEEec
Q 008015 166 FLPKAI-ADQRSCLSLEVVSGPSR-GIRCSVQSANASRLPLTLGRVS-PSDVLLKDSEVSGKHALINWNPNKLKWELVDM 242 (581)
Q Consensus 166 ~~p~~~-~~~~~~~~L~v~~g~~~-g~~~~l~~~~~~~~~~~iGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~Dl 242 (581)
+.++.| ..++..+.|.+..|... ...+.+... .+++||.. .||++|+..++||.||.+.+......++|.||
T Consensus 5 ~~~p~wA~kpp~g~hldv~k~d~li~kl~iddkr-----~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl 79 (337)
T KOG1880|consen 5 FDPPSWAGKPPAGLHLDVVKGDKLIQKLIIDDKR-----RYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDL 79 (337)
T ss_pred CCCCCcccCCCCCCceeeeecchhHHHHHhhhhh-----hhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEc
Confidence 334444 44555788888877653 334444444 69999996 89999999999999999999887667999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 243 GSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 243 gS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
||++|||+...++.. -.+.+|..|..+++|.++..+.
T Consensus 80 ~s~hgtf~g~~rL~~--------~~p~~l~i~~~~~fgasTr~y~ 116 (337)
T KOG1880|consen 80 GSTHGTFLGNERLEP--------HKPVQLEIGSTFHFGASTRIYL 116 (337)
T ss_pred cCCcceeeeeeeecc--------CCCccccCCceEEEeccceeee
Confidence 999999999988883 4679999999999997766554
No 29
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.96 E-value=1.7e-05 Score=86.23 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=77.6
Q ss_pred EEEEEeecCCCceeeeeeccCCCCcceeec-CcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCC
Q 008015 178 LSLEVVSGPSRGIRCSVQSANASRLPLTLG-RVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPIN 256 (581)
Q Consensus 178 ~~L~v~~g~~~g~~~~l~~~~~~~~~~~iG-R~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i~ 256 (581)
+.|.|+.||..|..++|..+ .++|| +.++|||++.|+.||++|++|....+ ++.+.| +..+.++||.++.
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g-----~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~--~~~l~~--~~~~~~~~g~~~~ 71 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEG-----NLVLGTDAADCDIVLSDGGIAAVHVSLHVRLE--GVTLAG--AVEPAWEEGGVLP 71 (410)
T ss_pred CEEEEecCCCCCcEEECCCC-----ceEeccCCCCcEEEeCCCCccchheEEEEcCc--eEEEec--CCcceeECCcccc
Confidence 36899999999999999999 79999 99999999999999999999999988 787775 5677889993333
Q ss_pred CCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 257 HPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 257 ~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
. .....|..+..+.+|...+.+.
T Consensus 72 ~--------~~g~~l~~~~~l~~g~~~~~~g 94 (410)
T TIGR02500 72 D--------EEGTPLPSGTPLLVAGVAFALG 94 (410)
T ss_pred c--------CCCCccCCCCceecceeEEecc
Confidence 2 1236688888888888877764
No 30
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.72 E-value=0.0011 Score=70.93 Aligned_cols=65 Identities=12% Similarity=0.321 Sum_probs=46.9
Q ss_pred ecccccceeeeccCCcce-------eccHHHHHHHHHHHhhhhcccccchHHHHHHHHhhhhhh----ccccCCceEEEE
Q 008015 499 IDQASKAFALLASDGFWD-------VISVKKAIQLVVQMREKYSADKENSTEKIANVLLSEART----LRTKDNTSIIFL 567 (581)
Q Consensus 499 i~~~~~d~lVLaSDGlwD-------~ls~~ei~~iv~~~~~~~~~~~~~~~~~~A~~Lv~~A~~----~gs~DNiTvIVV 567 (581)
....+||.+++.|||+.| .+..+...+++.... ..+++++++.+.+.... ....||+|++++
T Consensus 291 ~~l~~gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~l 363 (367)
T COG2208 291 LQLEPGDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLL-------GQPAEEILEAILESLEELQGDQIQDDDITLLVL 363 (367)
T ss_pred EEecCCCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhhCCccccCceEEEEE
Confidence 444469999999999999 566666777766421 35677777777766543 334688999999
Q ss_pred ecC
Q 008015 568 DFD 570 (581)
Q Consensus 568 ~~~ 570 (581)
++.
T Consensus 364 k~~ 366 (367)
T COG2208 364 KVK 366 (367)
T ss_pred Eec
Confidence 875
No 31
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00022 Score=75.48 Aligned_cols=77 Identities=31% Similarity=0.321 Sum_probs=63.2
Q ss_pred ceeecCcCCCcceeeccccccceeEEecC-------------CCCceeeEEecccccccccccccCCCCCCCCCCCCCCc
Q 008015 203 PLTLGRVSPSDVLLKDSEVSGKHALINWN-------------PNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (581)
Q Consensus 203 ~~~iGR~~~~di~l~d~~VSr~Ha~I~~~-------------~~~~~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~ 269 (581)
.+++||.+.||..+....+|.+|-.|..- .+...+++.|. |+||||||.+.+.. +.-.
T Consensus 65 ~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k--------~~~r 135 (475)
T KOG0615|consen 65 EFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGK--------GLSR 135 (475)
T ss_pred eEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhc--------cccc
Confidence 69999999999999998899888877543 23367999996 89999999999885 4568
Q ss_pred ccCCCCeEEecccceEEEE
Q 008015 270 ELTSGDIITLGTTSSIHVQ 288 (581)
Q Consensus 270 ~L~~Gd~i~lG~~~~~~v~ 288 (581)
.|.+||.|.+|-.......
T Consensus 136 ~lkN~dei~is~p~~~~~v 154 (475)
T KOG0615|consen 136 ILKNGDEISISIPALKIFV 154 (475)
T ss_pred cccCCCEEEeccchhheee
Confidence 8999999999977655443
No 32
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.35 E-value=0.026 Score=65.64 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=62.5
Q ss_pred eeeeeeccCCCCcceeecCcC---CCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCC
Q 008015 190 IRCSVQSANASRLPLTLGRVS---PSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWG 266 (581)
Q Consensus 190 ~~~~l~~~~~~~~~~~iGR~~---~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g 266 (581)
..+.|..+ ..+|||.+ ..||+|....|--+||.|.-.+++.-+.|.-.+ .--|||||+.|..
T Consensus 470 LlY~ikeG-----~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e-~aetyVNGk~v~e--------- 534 (1221)
T KOG0245|consen 470 LLYYIKEG-----ETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCE-DAETYVNGKLVTE--------- 534 (1221)
T ss_pred EEEEeccC-----ceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCC-ccceeEccEEcCC---------
Confidence 45567777 78999975 789999999999999999998884335555432 2349999999996
Q ss_pred CCcccCCCCeEEecccc
Q 008015 267 KPMELTSGDIITLGTTS 283 (581)
Q Consensus 267 ~~~~L~~Gd~i~lG~~~ 283 (581)
|..|+.||+|-+|..-
T Consensus 535 -p~qL~~GdRiilG~~H 550 (1221)
T KOG0245|consen 535 -PTQLRSGDRIILGGNH 550 (1221)
T ss_pred -cceeccCCEEEEcCce
Confidence 5999999999999853
No 33
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.24 E-value=0.047 Score=62.91 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=75.7
Q ss_pred EEEEe--ecCCCceeeeeeccCCCCcceeecCcCCC--cceeeccccccceeEEecCCCCceeeEEeccccccccccccc
Q 008015 179 SLEVV--SGPSRGIRCSVQSANASRLPLTLGRVSPS--DVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQP 254 (581)
Q Consensus 179 ~L~v~--~g~~~g~~~~l~~~~~~~~~~~iGR~~~~--di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~ 254 (581)
+|+++ +|....+.+.|+.+ +.-+|-...+ .|.|..|.|-.+||.|.+-++ -..|+-..----|||||.+
T Consensus 358 vLve~s~dG~~s~~ri~L~~~-----vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG--VvTvTP~~~DA~t~VnGh~ 430 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQLS-----VTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG--VVTVTPRSMDAETYVNGHR 430 (1629)
T ss_pred EEEEEcCCCCCcceeEEeccC-----ceeccccccCCcceeeeCCCCCccccchhhccc--eEEecccccchhhhcccee
Confidence 34444 45545578889887 7889998755 689999999999999999888 8888887555569999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEeccc-ceEEEEEe
Q 008015 255 INHPDSGSRHWGKPMELTSGDIITLGTT-SSIHVQIT 290 (581)
Q Consensus 255 i~~p~~~~~~~g~~~~L~~Gd~i~lG~~-~~~~v~v~ 290 (581)
|.+ +..|+.|+.|.||.. +|.|+.-.
T Consensus 431 isq----------ttiL~~G~~v~fGa~hsfkF~dss 457 (1629)
T KOG1892|consen 431 ISQ----------TTILQSGMKVQFGASHSFKFVDSS 457 (1629)
T ss_pred cch----------hhhhccCCEEEeccceeEEecCCc
Confidence 996 489999999999965 67776433
No 34
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=93.52 E-value=0.14 Score=55.99 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=69.9
Q ss_pred EEEEeecCCCceeeeeeccCCCCcceeecCcC-CCcceee------ccccccceeEEecCCCCceeeEEecccccccccc
Q 008015 179 SLEVVSGPSRGIRCSVQSANASRLPLTLGRVS-PSDVLLK------DSEVSGKHALINWNPNKLKWELVDMGSLNGTLLN 251 (581)
Q Consensus 179 ~L~v~~g~~~g~~~~l~~~~~~~~~~~iGR~~-~~di~l~------d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vn 251 (581)
.+-|+-|+.. .+.+.+. .+++||.. ++.|-|+ ...|||+.|.|...++ +.|+|..|| .--.|||
T Consensus 432 AiAvL~Gr~s--kh~mrk~-----EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~-GsF~IkNlG-K~~I~vn 502 (547)
T KOG2293|consen 432 AIAVLYGRFS--KHYMRKK-----EVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND-GSFFIKNLG-KRSILVN 502 (547)
T ss_pred eeEEEechhh--HhhhcCc-----ceEeeccCCCcceeeeccccCccceeeccceeEEeccC-CcEEeccCc-ceeEEeC
Confidence 4556666533 3444444 69999996 3333332 2689999999999887 689999998 5778999
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 252 SQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 252 g~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
|.++.+ |....|++..+|.|-.-.|+|.
T Consensus 503 g~~l~~--------gq~~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 503 GGELDR--------GQKVILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred CccccC--------CceEEeccCcEEEEccceEEEe
Confidence 999985 7778899999999988888776
No 35
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.57 E-value=0.49 Score=53.12 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=64.8
Q ss_pred eeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccCCCCCCCCCCCCCCc
Q 008015 190 IRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPM 269 (581)
Q Consensus 190 ~~~~l~~~~~~~~~~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~ 269 (581)
..++|..+ .++|||+++ -.|.|...||+..++..+-+++...|.-||. |-+-|||..+.. |...
T Consensus 25 ~~~~~~~~-----~~~~gr~pe--t~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~-np~~~~~~~~~~--------~~~~ 88 (526)
T TIGR01663 25 HFIHLDAG-----ALFLGRGPE--TGIRDRKCSKRQIELQADLEKATVALKQLGV-NPCGTGGLELKP--------GGEG 88 (526)
T ss_pred CeeccCCC-----ceEEccCcc--cccchhhhchhhheeeecccCceEEEEEccC-CCcccCceEecC--------CCee
Confidence 45556655 689999975 4678999999999999998888889999985 999999999884 6789
Q ss_pred ccCCCCeEEecccc
Q 008015 270 ELTSGDIITLGTTS 283 (581)
Q Consensus 270 ~L~~Gd~i~lG~~~ 283 (581)
.|.+||.+.+=.-.
T Consensus 89 ~l~~g~~l~~v~~~ 102 (526)
T TIGR01663 89 ELGHGDLLEIVNGL 102 (526)
T ss_pred eecCCCEEEEeccc
Confidence 99999998774433
No 36
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.25 E-value=0.98 Score=52.65 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=73.2
Q ss_pred eEEEEEeecCCCce--eeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEeccccccccccccc
Q 008015 177 CLSLEVVSGPSRGI--RCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQP 254 (581)
Q Consensus 177 ~~~L~v~~g~~~g~--~~~l~~~~~~~~~~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~ 254 (581)
++.+..-..|.... .+.+.. ..+||-...-||++..-.+=++||.|.+..+ +..++.-+-++ -+||||..
T Consensus 446 ~ylvnlnadP~lnellvyyl~~------~tlig~~~~~~i~l~glgi~p~h~vidI~~d-g~l~~~p~~~~-R~~VNGs~ 517 (1714)
T KOG0241|consen 446 CYLVNLNADPALNELLVYYLKD------HTLIGLFKSQDIQLSGLGIQPKHCVIDIESD-GELRLTPLLNA-RSCVNGSL 517 (1714)
T ss_pred eEEEeccCCccHHHHHHHhhcC------ceeeccccCcceeeecCcccCccceeeeccC-CcEEecccccc-eeeecCce
Confidence 44444445555442 333433 3789988899999999999999999999988 34888887665 89999998
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEecccceEEEEE
Q 008015 255 INHPDSGSRHWGKPMELTSGDIITLGTTSSIHVQI 289 (581)
Q Consensus 255 i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v~v 289 (581)
+.. +.+|.+||.|-.|...|.-+.+
T Consensus 518 v~~----------~t~L~~GdRiLwGnnHFFrvN~ 542 (1714)
T KOG0241|consen 518 VCS----------TTQLWHGDRILWGNNHFFRVNL 542 (1714)
T ss_pred ecc----------ccccccCceEEecccceEEecC
Confidence 885 4899999999999987766543
No 37
>PF15102 TMEM154: TMEM154 protein family
Probab=81.14 E-value=1.4 Score=40.78 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCc
Q 008015 13 LLMLILILLFIFIACKPWRFFFPSYRS 39 (581)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (581)
|..||++++++++.||+||.-..|++.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~K~~~ss~ 94 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRTKQEPSSQ 94 (146)
T ss_pred HHHHHHHHHHheeEEeecccCCCCccc
Confidence 334445556777779999976544333
No 38
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=74.73 E-value=5.8 Score=44.74 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhcccccccc
Q 008015 12 VLLMLILILLFIFIACKPWRFFFP 35 (581)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ 35 (581)
++.|.|+++++|+...++||+...
T Consensus 397 f~~if~iva~ii~~~L~R~rr~~~ 420 (807)
T KOG1094|consen 397 FVAIFLIVALIIALMLWRWRRLLS 420 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444455567998866
No 39
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=70.83 E-value=12 Score=40.46 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=65.0
Q ss_pred ceEEEEEeecCCCceeeeeeccCCCCcceeecCcCCCcceeeccccccceeEEecCCCCceeeEEecccccccccccccC
Q 008015 176 SCLSLEVVSGPSRGIRCSVQSANASRLPLTLGRVSPSDVLLKDSEVSGKHALINWNPNKLKWELVDMGSLNGTLLNSQPI 255 (581)
Q Consensus 176 ~~~~L~v~~g~~~g~~~~l~~~~~~~~~~~iGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~l~DlgS~NGT~vng~~i 255 (581)
..+.|..+.||..|+...|..+ .+|+|=.. |||+++=+. +.-..+...++ +.++.- +.--++|||.+.
T Consensus 3 ~~~Klr~Lng~L~GrEl~Lp~G-----~~tlG~~g-cDi~lpL~~--~~~~~L~i~e~--gi~l~~--~~~~vwVnG~~~ 70 (395)
T PRK15367 3 SSWKIRFLGHVLQGREVWLNEG-----NLSLGEKG-CDICIPLTI--NEKIILREQAD--SLFVDA--GKARVRVNGRRF 70 (395)
T ss_pred cceeeeecCCcccCcEEecCCC-----ceeecCCC-ceEEEECCC--CCEEEEEEcCC--cEEEec--CCceEEECCEEc
Confidence 4678999999999999999999 79999854 999887644 34445666666 666522 123478999887
Q ss_pred CCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 008015 256 NHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (581)
Q Consensus 256 ~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~ 286 (581)
.. ..+|.-+..|.+....+.+
T Consensus 71 ~~----------~~~LPl~q~Ie~aG~~~vl 91 (395)
T PRK15367 71 NP----------NKPLPSSGVLQVAGVAIAF 91 (395)
T ss_pred CC----------CCCCCCcchhhhcceEEEe
Confidence 64 2457777788877776665
No 40
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=65.14 E-value=5.5 Score=34.43 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCc
Q 008015 9 VFTVLLMLILILLFIFIACKPWRFFFPSYRS 39 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (581)
.|++..+++.+|+++..-|.-||.++.|++-
T Consensus 22 GVv~~al~~SlLIalaaKC~~~~k~~~SY~H 52 (102)
T PF15176_consen 22 GVVVTALVTSLLIALAAKCPVWYKYLASYRH 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 3444444445555555559999988777643
No 41
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.66 E-value=3.7 Score=37.31 Aligned_cols=19 Identities=11% Similarity=0.640 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 008015 10 FTVLLMLILILLFIFIACK 28 (581)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (581)
||+||+++++|+|++|+|+
T Consensus 4 l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555553
No 42
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=51.46 E-value=16 Score=34.65 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Q 008015 8 VVFTVLLMLILILLFIFIACKPWRFFF 34 (581)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (581)
...|.||+.+..++++.|++|-||.--
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345677777777777788888777554
No 43
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=50.34 E-value=22 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 008015 9 VFTVLLMLILILLFIFIACKPWR 31 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (581)
.+.+++|+++.++++++|++|=+
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 35566777888999999998865
No 44
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.60 E-value=18 Score=32.87 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccccccC
Q 008015 5 ESIVVFTVLLMLILILLFIFIACKPWRFFFPS 36 (581)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (581)
=.++++|+++.||+|++++++.-|+=|....+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P 33 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRRGLQP 33 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34678889999999999999999998876555
No 45
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=46.71 E-value=19 Score=31.50 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 008015 8 VVFTVLLMLILILLFIFIACKPWRFF 33 (581)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (581)
...+++.|+.+++.+++|++||-++-
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~R 78 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSLR 78 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhhc
Confidence 34677788888888999999986543
No 46
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=46.56 E-value=14 Score=29.48 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=19.4
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 246 NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
+..+|||+...+ .-..|.+||+|.++...+.++
T Consensus 33 g~V~VNGe~e~r---------rg~Kl~~GD~V~~~~~~~~Vv 65 (65)
T PF13275_consen 33 GEVKVNGEVETR---------RGKKLRPGDVVEIDGEEYRVV 65 (65)
T ss_dssp HHHEETTB-------------SS----SSEEEEETTEEEEEE
T ss_pred CceEECCEEccc---------cCCcCCCCCEEEECCEEEEEC
Confidence 567899988775 237899999999988776653
No 47
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=44.13 E-value=13 Score=26.75 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc
Q 008015 7 IVVFTVLLMLILILLFIFIACKPWR 31 (581)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (581)
.+++|.+.-+..+.++.+|++|.|-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 3457777778888999999999996
No 48
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=41.33 E-value=23 Score=35.24 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 008015 9 VFTVLLMLILILLFIFIACK 28 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (581)
-+++.+++|||++++.++|-
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 37777777777777776643
No 49
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=37.14 E-value=47 Score=23.67 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccc
Q 008015 6 SIVVFTVLLMLILILLFIFIACKPWR 31 (581)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (581)
+|++-+++-|.++++.+..|||..-|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666666777777788888876443
No 50
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=36.64 E-value=45 Score=23.34 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 008015 4 RESIVVFTVLLMLILILLFIFI 25 (581)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (581)
-|.+..++.+||+++.++-+++
T Consensus 9 fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 9 FEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777888777665554
No 51
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=36.41 E-value=18 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=18.5
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeE
Q 008015 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDII 277 (581)
Q Consensus 246 NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i 277 (581)
++.+|||+.+..|+ +.+.+||+|
T Consensus 26 g~V~VNg~~v~~~~---------~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDPS---------YIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESSTT---------SBESTTEEE
T ss_pred CEEEECCEEEcCCC---------CCCCCcCCC
Confidence 56789999998653 788899876
No 52
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.33 E-value=46 Score=26.20 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccc
Q 008015 7 IVVFTVLLMLILILLFIFIACKPWRFF 33 (581)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (581)
+-++.++.|.+.++..++||++|-+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 345777778888888999999998855
No 53
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=35.37 E-value=31 Score=26.56 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.9
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEe
Q 008015 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITL 279 (581)
Q Consensus 246 NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~l 279 (581)
+..+|||+.+..| .+.|..||.|.+
T Consensus 34 G~V~VNg~~~~~~---------~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR---------GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC---------CCCCCCCCEEEe
Confidence 4567888887543 278999999976
No 54
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.31 E-value=46 Score=24.77 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 008015 9 VFTVLLMLILILLFIFIACKPWR 31 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (581)
.+.+++|++.++++++++++|=|
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 46667777777788888888765
No 55
>PRK11507 ribosome-associated protein; Provisional
Probab=34.99 E-value=42 Score=27.26 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=24.5
Q ss_pred cccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEE
Q 008015 246 NGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIH 286 (581)
Q Consensus 246 NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~ 286 (581)
+...|||+...+ .-..|.+||+|.+++..+.+
T Consensus 37 g~V~VNGeve~r---------RgkKl~~GD~V~~~g~~~~v 68 (70)
T PRK11507 37 GQVKVDGAVETR---------KRCKIVAGQTVSFAGHSVQV 68 (70)
T ss_pred CceEECCEEecc---------cCCCCCCCCEEEECCEEEEE
Confidence 457899987664 23789999999999876654
No 56
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=33.49 E-value=32 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 008015 13 LLMLILILLFIFIACKPWR 31 (581)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (581)
+||+++++++.+|..||-|
T Consensus 6 il~~vv~~~i~yf~iRPQk 24 (113)
T PRK06531 6 IIMFVVMLGLIFFMQRQQK 24 (113)
T ss_pred HHHHHHHHHHHHheechHH
Confidence 3343333333344555554
No 57
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.18 E-value=45 Score=25.16 Aligned_cols=22 Identities=18% Similarity=0.461 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 008015 5 ESIVVFTVLLMLILILLFIFIA 26 (581)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (581)
.+..+++.++++++++++++|+
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766
No 58
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=29.05 E-value=67 Score=24.45 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=5.8
Q ss_pred cccccccCc
Q 008015 44 KSGELERPL 52 (581)
Q Consensus 44 ~~~~~~~~~ 52 (581)
|-+|+++|.
T Consensus 30 QfDDle~~a 38 (51)
T TIGR00847 30 QYDDLKGAA 38 (51)
T ss_pred CCCCCccHH
Confidence 447777773
No 59
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=27.86 E-value=66 Score=26.41 Aligned_cols=18 Identities=39% Similarity=0.742 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008015 11 TVLLMLILILLFIFIACK 28 (581)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (581)
+..++++++++++++.|+
T Consensus 7 ~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 7 IVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhheeEEEEE
Confidence 333444444444555554
No 60
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.66 E-value=97 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccC
Q 008015 9 VFTVLLMLILILLFIFIACKPWRFFFPS 36 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (581)
.+.+.+|.++++++-|.-||--|+-.+|
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444555555555555566655554444
No 61
>PHA00007 E cell lysis protein
Probab=26.06 E-value=82 Score=26.04 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 008015 5 ESIVVFTVLLMLILILLFIFIA 26 (581)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (581)
-.|.+|+++|-||+=.++|.|+
T Consensus 7 ~~~LAFLLLLSLlLPSLLImFI 28 (91)
T PHA00007 7 SDTLAFLLLLSLLLPSLLIMFI 28 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888888887
No 62
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=25.08 E-value=84 Score=30.29 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccccccccccccCcccCchhhhhhcccccccccCCC
Q 008015 10 FTVLLMLILILLFIFIACKPWRFFFPSYRSRSIIKSGELERPLVSDDEALVRDQSNDLTRNYDLE 74 (581)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (581)
+++.|-++++++.++.+.|=|||++...+..+..+.++..++...... .-+-+..|.||+.
T Consensus 9 ~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~~~~~~~~P~~~~P~~~----dfT~eEL~~ydGs 69 (183)
T KOG1110|consen 9 FFTPLALALLIFLLFVGLKLSRFKFRRDSEKSDGSTEEPPKESLPKVR----DFTVEELRQYDGS 69 (183)
T ss_pred hhhhHHHHHHHHHHHhheeeeeeeccccccccccCCCCCCccCCCccc----ccCHHHHHhcCCC
Confidence 344444445555557778888886665566666666655443221111 2223445667766
No 63
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.26 E-value=55 Score=30.22 Aligned_cols=23 Identities=26% Similarity=0.722 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 008015 10 FTVLLMLILILLFIFIACKPWRF 32 (581)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (581)
++++++++++++++++..|+|++
T Consensus 25 ll~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 25 LLLALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666666666777765
No 64
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.40 E-value=78 Score=27.30 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 008015 15 MLILILLF 22 (581)
Q Consensus 15 ~~~~~~~~ 22 (581)
++|+++||
T Consensus 11 l~LA~lLl 18 (95)
T PF07172_consen 11 LLLAALLL 18 (95)
T ss_pred HHHHHHHH
Confidence 33333333
No 65
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=22.35 E-value=84 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=29.4
Q ss_pred eeeEEecccccccccccccCCCCCCCCCCCCCCcccCCCCeEEecccceEEE
Q 008015 236 KWELVDMGSLNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLGTTSSIHV 287 (581)
Q Consensus 236 ~~~l~DlgS~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG~~~~~~v 287 (581)
+|+|.| +..+|||+.-++ .-..|..||.|.+.+..+.+.
T Consensus 31 K~~i~e----g~V~vNGe~EtR---------RgkKlr~gd~V~i~~~~~~v~ 69 (73)
T COG2501 31 KAFIAE----GEVKVNGEVETR---------RGKKLRDGDVVEIPGQRYQVV 69 (73)
T ss_pred HHHHHC----CeEEECCeeeec---------cCCEeecCCEEEECCEEEEEE
Confidence 455544 578999987775 227899999999998876654
No 66
>PF15102 TMEM154: TMEM154 protein family
Probab=21.42 E-value=64 Score=30.05 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccC
Q 008015 10 FTVLLMLILILLFIFIACKPWRFFFPS 36 (581)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (581)
++.++.|+++|++++|+...+|+-..-
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccC
Confidence 344455556677778888877776554
No 67
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=20.76 E-value=47 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.6
Q ss_pred ccceeeeccCCcceeccHH
Q 008015 503 SKAFALLASDGFWDVISVK 521 (581)
Q Consensus 503 ~~d~lVLaSDGlwD~ls~~ 521 (581)
.|+.+++|+||+|=.+...
T Consensus 26 ~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 26 PGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred CCcEEEEecCcEEEEEech
Confidence 6899999999999665544
No 68
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.35 E-value=1.5e+02 Score=19.70 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 008015 6 SIVVFTVLLMLILILLFIF 24 (581)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (581)
.|+.++++++||--+++++
T Consensus 5 vi~G~ilv~lLlgYLvyAL 23 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444443
No 69
>smart00363 S4 S4 RNA-binding domain.
Probab=20.07 E-value=75 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=19.3
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCCeEEec
Q 008015 245 LNGTLLNSQPINHPDSGSRHWGKPMELTSGDIITLG 280 (581)
Q Consensus 245 ~NGT~vng~~i~~p~~~~~~~g~~~~L~~Gd~i~lG 280 (581)
.++.+|||+.+..| ...|..||.|.+-
T Consensus 25 ~g~i~vng~~~~~~---------~~~l~~gd~i~~~ 51 (60)
T smart00363 25 QGRVKVNGKKVTKP---------SYIVKPGDVISVR 51 (60)
T ss_pred cCCEEECCEEecCC---------CeEeCCCCEEEEc
Confidence 34678899887432 2678899998874
Done!