Query 008016
Match_columns 581
No_of_seqs 1179 out of 4514
Neff 11.8
Searched_HMMs 46136
Date Thu Mar 28 18:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.3E-42 7.1E-47 313.2 26.3 377 118-578 116-492 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.7E-38 3.7E-43 289.2 28.3 377 116-576 148-524 (966)
3 KOG1840 Kinesin light chain [C 100.0 8.1E-33 1.8E-37 259.5 45.0 331 218-552 172-502 (508)
4 KOG1840 Kinesin light chain [C 100.0 3.7E-32 8E-37 255.1 46.2 319 186-507 182-500 (508)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-30 2.3E-35 265.2 44.7 393 118-577 127-577 (615)
6 TIGR00990 3a0801s09 mitochondr 100.0 6.7E-27 1.5E-31 237.5 42.0 354 119-531 161-573 (615)
7 PRK11447 cellulose synthase su 100.0 5.7E-27 1.2E-31 253.3 43.7 386 124-570 275-739 (1157)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-26 2.2E-31 252.0 42.5 374 119-569 500-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-26 4.7E-31 249.4 42.2 379 118-574 465-869 (899)
10 PRK15174 Vi polysaccharide exp 100.0 9.7E-26 2.1E-30 227.8 43.3 368 119-565 43-414 (656)
11 PRK11447 cellulose synthase su 100.0 1.9E-25 4.2E-30 241.5 45.1 398 120-573 183-702 (1157)
12 PRK15174 Vi polysaccharide exp 100.0 6.5E-26 1.4E-30 229.0 38.6 366 129-575 16-385 (656)
13 KOG2002 TPR-containing nuclear 99.9 1.7E-24 3.8E-29 208.6 34.8 403 117-574 306-748 (1018)
14 KOG0547 Translocase of outer m 99.9 1E-23 2.3E-28 188.0 34.5 403 116-580 113-575 (606)
15 PRK10049 pgaA outer membrane p 99.9 2.1E-23 4.5E-28 215.7 42.2 390 122-578 19-463 (765)
16 KOG2002 TPR-containing nuclear 99.9 3.4E-23 7.3E-28 199.8 38.8 403 118-573 233-677 (1018)
17 PRK11788 tetratricopeptide rep 99.9 2.4E-21 5.1E-26 187.6 38.5 312 116-486 33-347 (389)
18 PRK11788 tetratricopeptide rep 99.9 4.8E-21 1E-25 185.5 36.9 309 206-572 38-348 (389)
19 PRK04841 transcriptional regul 99.9 6.8E-20 1.5E-24 196.9 47.8 500 40-575 259-764 (903)
20 PRK10049 pgaA outer membrane p 99.9 2.1E-20 4.6E-25 193.4 40.2 352 120-529 51-456 (765)
21 KOG1130 Predicted G-alpha GTPa 99.9 1.1E-21 2.4E-26 171.5 25.4 330 168-516 23-372 (639)
22 KOG1130 Predicted G-alpha GTPa 99.9 6.3E-22 1.4E-26 173.0 23.9 330 209-559 23-372 (639)
23 PLN03218 maturation of RBCL 1; 99.9 1.4E-19 3.1E-24 188.4 44.0 348 161-571 436-783 (1060)
24 PLN03218 maturation of RBCL 1; 99.9 1.8E-19 3.8E-24 187.8 44.6 378 119-571 371-748 (1060)
25 PRK09782 bacteriophage N4 rece 99.9 2.6E-20 5.6E-25 192.6 38.1 344 158-573 372-742 (987)
26 KOG1126 DNA-binding cell divis 99.9 3.1E-22 6.8E-27 186.1 20.3 310 201-577 315-626 (638)
27 KOG2003 TPR repeat-containing 99.9 3.1E-21 6.6E-26 170.9 23.9 372 125-567 244-685 (840)
28 PRK09782 bacteriophage N4 rece 99.9 6.9E-20 1.5E-24 189.5 36.9 359 118-559 376-761 (987)
29 KOG1126 DNA-binding cell divis 99.9 2.7E-21 5.9E-26 180.0 22.6 296 124-487 325-621 (638)
30 KOG1155 Anaphase-promoting com 99.9 2.9E-19 6.2E-24 158.9 33.8 304 209-571 233-536 (559)
31 KOG0547 Translocase of outer m 99.9 5.2E-20 1.1E-24 164.7 28.9 368 160-578 113-539 (606)
32 PLN03081 pentatricopeptide (PP 99.9 2.8E-20 6E-25 192.2 30.6 370 118-572 158-558 (697)
33 KOG2076 RNA polymerase III tra 99.9 1.4E-18 3E-23 167.3 38.4 402 113-571 134-555 (895)
34 KOG0548 Molecular co-chaperone 99.9 4.5E-19 9.7E-24 161.2 33.1 374 120-555 4-473 (539)
35 PLN03081 pentatricopeptide (PP 99.9 2E-19 4.4E-24 185.8 32.6 335 121-526 90-452 (697)
36 KOG1173 Anaphase-promoting com 99.9 2E-19 4.3E-24 164.1 27.9 393 120-575 51-522 (611)
37 PRK14574 hmsH outer membrane p 99.9 3.3E-18 7.2E-23 173.5 38.7 396 120-577 36-519 (822)
38 PLN03077 Protein ECB2; Provisi 99.9 9.3E-19 2E-23 185.5 34.7 386 119-572 254-721 (857)
39 KOG2003 TPR repeat-containing 99.9 4.8E-18 1E-22 150.9 31.2 362 119-557 277-709 (840)
40 KOG1155 Anaphase-promoting com 99.8 1.2E-17 2.6E-22 148.8 31.5 349 121-528 167-535 (559)
41 KOG1173 Anaphase-promoting com 99.8 2.2E-18 4.8E-23 157.4 25.8 279 114-444 240-518 (611)
42 PLN03077 Protein ECB2; Provisi 99.8 1.9E-17 4E-22 175.6 36.1 368 121-568 225-651 (857)
43 KOG4162 Predicted calmodulin-b 99.8 4.9E-16 1.1E-20 147.4 38.5 395 123-574 328-786 (799)
44 KOG2076 RNA polymerase III tra 99.8 5.1E-17 1.1E-21 156.6 32.3 349 162-568 139-509 (895)
45 KOG0624 dsRNA-activated protei 99.8 2.8E-16 6.1E-21 134.7 31.4 320 116-487 36-371 (504)
46 PRK14574 hmsH outer membrane p 99.8 5.8E-16 1.3E-20 157.3 36.5 363 158-575 30-483 (822)
47 PRK04841 transcriptional regul 99.8 7.6E-15 1.6E-19 158.1 47.0 395 110-532 366-763 (903)
48 KOG1129 TPR repeat-containing 99.8 8.7E-18 1.9E-22 142.9 17.6 281 129-464 190-470 (478)
49 COG2956 Predicted N-acetylgluc 99.8 6.5E-15 1.4E-19 125.6 32.5 305 122-485 39-346 (389)
50 PF13429 TPR_15: Tetratricopep 99.8 1.9E-18 4.2E-23 158.0 12.1 267 249-572 12-278 (280)
51 KOG1174 Anaphase-promoting com 99.8 3E-15 6.4E-20 131.7 30.5 277 242-578 229-507 (564)
52 KOG0624 dsRNA-activated protei 99.8 4.4E-15 9.5E-20 127.5 30.6 320 199-576 34-375 (504)
53 COG2956 Predicted N-acetylgluc 99.8 1.4E-14 3.1E-19 123.5 31.8 303 208-569 40-345 (389)
54 PF13429 TPR_15: Tetratricopep 99.8 1.4E-17 3E-22 152.3 14.9 267 121-444 11-277 (280)
55 KOG1129 TPR repeat-containing 99.8 7.3E-17 1.6E-21 137.3 17.3 269 171-487 188-459 (478)
56 TIGR00540 hemY_coli hemY prote 99.8 6E-15 1.3E-19 142.0 32.5 314 207-574 88-402 (409)
57 TIGR00540 hemY_coli hemY prote 99.7 1.2E-14 2.7E-19 139.8 33.3 318 117-488 83-401 (409)
58 KOG1941 Acetylcholine receptor 99.7 3.3E-14 7.2E-19 123.0 31.8 344 166-527 10-358 (518)
59 KOG0548 Molecular co-chaperone 99.7 5.2E-14 1.1E-18 128.7 34.4 364 120-547 38-498 (539)
60 PRK12370 invasion protein regu 99.7 1.3E-15 2.8E-20 152.2 26.6 253 259-572 275-536 (553)
61 PRK12370 invasion protein regu 99.7 1.3E-15 2.9E-20 152.0 26.4 251 132-443 275-534 (553)
62 COG3063 PilF Tfp pilus assembl 99.7 2.9E-15 6.3E-20 121.8 23.1 206 242-487 32-237 (250)
63 cd05804 StaR_like StaR_like; a 99.7 4.2E-14 9E-19 135.1 35.6 339 199-578 2-343 (355)
64 KOG0495 HAT repeat protein [RN 99.7 2.7E-14 5.8E-19 133.0 32.4 273 157-487 511-783 (913)
65 KOG2376 Signal recognition par 99.7 3.2E-13 6.9E-18 124.8 38.9 409 119-576 13-492 (652)
66 cd05804 StaR_like StaR_like; a 99.7 5E-14 1.1E-18 134.5 35.5 338 158-535 2-342 (355)
67 TIGR02521 type_IV_pilW type IV 99.7 3.6E-15 7.8E-20 133.7 25.8 204 242-485 28-231 (234)
68 KOG1941 Acetylcholine receptor 99.7 7.8E-14 1.7E-18 120.8 31.1 346 121-487 9-361 (518)
69 KOG1174 Anaphase-promoting com 99.7 2.9E-13 6.3E-18 119.4 34.9 388 121-574 46-470 (564)
70 COG3063 PilF Tfp pilus assembl 99.7 3.3E-15 7.2E-20 121.5 21.1 198 284-522 32-229 (250)
71 TIGR02521 type_IV_pilW type IV 99.7 6.7E-15 1.5E-19 131.9 25.1 206 198-443 26-231 (234)
72 PRK10747 putative protoheme IX 99.7 1.5E-13 3.1E-18 131.6 35.1 301 164-530 86-391 (398)
73 PRK11189 lipoprotein NlpI; Pro 99.7 1.8E-14 3.9E-19 131.7 27.3 227 216-486 39-265 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.7 1.3E-14 2.8E-19 132.7 25.3 226 176-444 40-265 (296)
75 PRK10747 putative protoheme IX 99.7 2.8E-13 6.1E-18 129.6 35.1 303 117-487 83-391 (398)
76 KOG0495 HAT repeat protein [RN 99.7 2.6E-13 5.6E-18 126.6 32.5 372 117-577 515-886 (913)
77 KOG1156 N-terminal acetyltrans 99.7 1.1E-12 2.4E-17 122.6 35.7 389 120-572 9-435 (700)
78 KOG1125 TPR repeat-containing 99.7 1.2E-14 2.7E-19 133.9 21.9 240 121-393 288-562 (579)
79 KOG1125 TPR repeat-containing 99.7 8.6E-15 1.9E-19 134.9 19.7 266 207-516 289-559 (579)
80 KOG4162 Predicted calmodulin-b 99.6 5.6E-12 1.2E-16 120.4 36.8 372 116-531 355-785 (799)
81 KOG0550 Molecular chaperone (D 99.6 5.6E-14 1.2E-18 124.0 21.1 287 114-444 45-350 (486)
82 KOG2376 Signal recognition par 99.6 1.3E-10 2.8E-15 107.9 42.1 393 121-565 82-514 (652)
83 COG2909 MalT ATP-dependent tra 99.6 5.1E-11 1.1E-15 116.3 41.2 414 38-483 263-685 (894)
84 KOG0550 Molecular chaperone (D 99.6 3.5E-13 7.5E-18 119.1 22.8 285 161-487 48-351 (486)
85 KOG1156 N-terminal acetyltrans 99.6 3.8E-11 8.3E-16 112.5 36.2 403 116-576 39-516 (700)
86 KOG1127 TPR repeat-containing 99.6 1.1E-11 2.3E-16 121.5 32.2 396 121-574 565-999 (1238)
87 KOG1127 TPR repeat-containing 99.6 6.2E-12 1.3E-16 123.1 29.6 375 131-573 471-915 (1238)
88 KOG3785 Uncharacterized conser 99.6 1E-11 2.3E-16 107.6 27.2 384 124-573 63-492 (557)
89 KOG3785 Uncharacterized conser 99.6 4.2E-11 9E-16 103.9 30.8 377 127-568 31-454 (557)
90 TIGR03302 OM_YfiO outer membra 99.5 2.4E-12 5.1E-17 114.8 22.9 180 242-443 30-231 (235)
91 TIGR03302 OM_YfiO outer membra 99.5 2.9E-12 6.3E-17 114.2 22.4 181 325-528 29-231 (235)
92 KOG1915 Cell cycle control pro 99.5 7.4E-10 1.6E-14 100.1 35.8 402 121-580 76-545 (677)
93 KOG2300 Uncharacterized conser 99.5 1E-08 2.2E-13 93.2 42.9 420 119-567 8-552 (629)
94 KOG1915 Cell cycle control pro 99.5 3.6E-09 7.9E-14 95.8 37.8 363 121-529 110-536 (677)
95 PF12569 NARP1: NMDA receptor- 99.5 5.9E-10 1.3E-14 107.7 34.4 314 120-491 6-339 (517)
96 PF14938 SNAP: Soluble NSF att 99.4 2E-11 4.2E-16 111.0 20.9 228 243-483 33-263 (282)
97 KOG2047 mRNA splicing factor [ 99.4 1.1E-08 2.5E-13 96.1 38.5 348 175-575 360-723 (835)
98 PF12569 NARP1: NMDA receptor- 99.4 1.2E-09 2.7E-14 105.5 33.6 322 161-535 3-340 (517)
99 KOG4340 Uncharacterized conser 99.4 2.3E-09 5E-14 91.1 30.5 230 125-397 17-265 (459)
100 PF14938 SNAP: Soluble NSF att 99.4 3.8E-11 8.2E-16 109.1 20.6 228 285-531 33-261 (282)
101 KOG2047 mRNA splicing factor [ 99.4 1.7E-08 3.7E-13 95.0 36.9 389 130-570 150-614 (835)
102 PLN02789 farnesyltranstransfer 99.4 5.4E-10 1.2E-14 101.9 26.7 219 202-470 36-268 (320)
103 PLN02789 farnesyltranstransfer 99.4 9.7E-10 2.1E-14 100.2 28.0 210 253-512 45-268 (320)
104 COG3071 HemY Uncharacterized e 99.3 4.8E-08 1E-12 87.0 34.0 303 118-487 84-391 (400)
105 COG3071 HemY Uncharacterized e 99.3 1.3E-08 2.8E-13 90.6 29.8 298 167-530 89-391 (400)
106 KOG3617 WD40 and TPR repeat-co 99.3 5E-08 1.1E-12 94.4 35.7 366 128-573 738-1176(1416)
107 PRK15179 Vi polysaccharide bio 99.3 6.5E-10 1.4E-14 111.7 22.0 158 299-487 61-218 (694)
108 KOG1839 Uncharacterized protei 99.3 7.4E-10 1.6E-14 113.1 21.2 361 209-574 671-1131(1236)
109 PRK15179 Vi polysaccharide bio 99.3 1E-09 2.3E-14 110.2 21.9 171 117-317 47-218 (694)
110 PRK10370 formate-dependent nit 99.2 2.8E-09 6.1E-14 90.6 20.7 149 168-358 22-173 (198)
111 PF13424 TPR_12: Tetratricopep 99.2 6.2E-11 1.3E-15 84.4 8.7 78 495-574 1-78 (78)
112 PF13424 TPR_12: Tetratricopep 99.2 8E-11 1.7E-15 83.9 9.2 77 411-488 1-77 (78)
113 KOG3617 WD40 and TPR repeat-co 99.2 5.7E-07 1.2E-11 87.4 36.1 252 159-443 855-1173(1416)
114 PRK15359 type III secretion sy 99.2 6.8E-10 1.5E-14 89.2 14.2 110 265-403 13-122 (144)
115 PRK15359 type III secretion sy 99.2 6.9E-10 1.5E-14 89.2 13.5 125 138-298 13-137 (144)
116 KOG1839 Uncharacterized protei 99.1 1.9E-08 4.2E-13 103.1 24.8 370 168-544 671-1143(1236)
117 COG5010 TadD Flp pilus assembl 99.1 5.2E-09 1.1E-13 88.0 17.2 165 158-354 63-227 (257)
118 PRK10370 formate-dependent nit 99.1 1.6E-08 3.6E-13 85.9 20.5 150 293-487 22-174 (198)
119 KOG1128 Uncharacterized conser 99.1 3.5E-09 7.6E-14 101.2 17.4 227 200-491 395-621 (777)
120 KOG1128 Uncharacterized conser 99.1 1.8E-09 3.9E-14 103.1 14.8 227 284-576 395-621 (777)
121 PF13525 YfiO: Outer membrane 99.1 8.6E-08 1.9E-12 82.3 24.0 183 118-349 5-198 (203)
122 COG5010 TadD Flp pilus assembl 99.1 5.9E-09 1.3E-13 87.7 16.0 164 200-398 64-227 (257)
123 PRK14720 transcript cleavage f 99.1 3.7E-08 8.1E-13 100.0 24.9 249 196-486 24-283 (906)
124 KOG2300 Uncharacterized conser 99.1 7.7E-06 1.7E-10 75.0 38.3 379 121-525 130-552 (629)
125 PRK14720 transcript cleavage f 99.1 4.7E-08 1E-12 99.3 25.3 148 118-316 31-178 (906)
126 PRK10866 outer membrane biogen 99.1 2.4E-07 5.2E-12 81.5 25.8 187 119-354 33-237 (243)
127 PF13525 YfiO: Outer membrane 99.1 6.4E-08 1.4E-12 83.1 21.7 167 328-516 4-195 (203)
128 KOG3060 Uncharacterized conser 99.1 5.4E-07 1.2E-11 75.4 25.0 195 130-359 24-221 (289)
129 KOG4340 Uncharacterized conser 99.1 7E-08 1.5E-12 82.3 20.2 224 173-439 21-265 (459)
130 PRK10866 outer membrane biogen 99.0 2.7E-07 5.9E-12 81.1 24.9 187 204-440 33-237 (243)
131 CHL00033 ycf3 photosystem I as 99.0 1.3E-08 2.9E-13 84.9 16.0 114 372-498 34-154 (168)
132 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 3.1E-13 84.7 15.8 117 200-329 32-155 (168)
133 PRK15363 pathogenicity island 99.0 2.2E-08 4.7E-13 78.5 15.0 102 200-317 32-133 (157)
134 PF09976 TPR_21: Tetratricopep 99.0 6.1E-08 1.3E-12 78.4 17.9 123 299-442 23-145 (145)
135 PRK15363 pathogenicity island 99.0 1.3E-08 2.7E-13 79.9 13.0 103 242-360 32-134 (157)
136 KOG1585 Protein required for f 99.0 2.1E-06 4.5E-11 71.4 25.9 227 239-481 25-251 (308)
137 TIGR02552 LcrH_SycD type III s 99.0 3.3E-08 7.2E-13 79.4 15.7 102 241-358 13-114 (135)
138 KOG3060 Uncharacterized conser 99.0 1.1E-06 2.3E-11 73.6 24.1 192 217-444 26-220 (289)
139 KOG1585 Protein required for f 99.0 2.1E-06 4.6E-11 71.3 25.0 225 158-397 27-251 (308)
140 PF04733 Coatomer_E: Coatomer 99.0 2.7E-08 5.8E-13 89.7 15.0 258 171-498 10-272 (290)
141 TIGR02552 LcrH_SycD type III s 98.9 3.6E-08 7.7E-13 79.2 14.2 102 158-274 13-114 (135)
142 KOG0553 TPR repeat-containing 98.9 1.5E-08 3.3E-13 86.9 12.0 102 114-232 77-178 (304)
143 KOG0553 TPR repeat-containing 98.9 3.2E-08 6.9E-13 85.0 13.9 119 244-388 80-198 (304)
144 PF09976 TPR_21: Tetratricopep 98.9 2E-07 4.3E-12 75.5 18.0 134 119-272 12-145 (145)
145 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 84.1 18.0 261 212-541 10-272 (290)
146 KOG3616 Selective LIM binding 98.9 1.3E-05 2.7E-10 77.5 30.2 226 164-443 663-910 (1636)
147 PRK02603 photosystem I assembl 98.9 1.8E-07 3.9E-12 78.3 16.4 113 197-322 29-148 (172)
148 PF10345 Cohesin_load: Cohesin 98.9 0.00019 4.1E-09 73.2 50.6 412 157-576 54-529 (608)
149 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.1E-07 2.3E-12 74.5 13.8 103 375-487 4-106 (119)
150 KOG3616 Selective LIM binding 98.9 0.00013 2.7E-09 70.9 37.5 228 289-572 663-912 (1636)
151 PRK02603 photosystem I assembl 98.9 2.8E-07 6E-12 77.2 16.9 115 369-496 31-152 (172)
152 TIGR02795 tol_pal_ybgF tol-pal 98.8 2.1E-07 4.5E-12 73.0 14.4 103 246-358 3-105 (119)
153 COG4783 Putative Zn-dependent 98.8 4E-06 8.7E-11 77.3 22.5 153 159-359 303-455 (484)
154 COG4783 Putative Zn-dependent 98.8 6.8E-07 1.5E-11 82.2 17.6 125 373-522 306-430 (484)
155 COG2909 MalT ATP-dependent tra 98.7 0.00023 5E-09 71.1 33.4 339 200-567 344-684 (894)
156 PLN03088 SGT1, suppressor of 98.7 2.5E-07 5.4E-12 86.9 13.0 96 120-232 4-99 (356)
157 PF12688 TPR_5: Tetratrico pep 98.7 7.2E-07 1.6E-11 67.9 12.8 102 246-357 2-103 (120)
158 PF12895 Apc3: Anaphase-promot 98.7 1.8E-07 4E-12 67.4 9.3 84 130-229 1-84 (84)
159 PF12688 TPR_5: Tetratrico pep 98.7 9.8E-07 2.1E-11 67.1 13.4 101 205-315 3-103 (120)
160 PLN03088 SGT1, suppressor of 98.7 7.2E-07 1.6E-11 83.8 15.0 95 248-358 5-99 (356)
161 KOG1070 rRNA processing protei 98.6 3.1E-05 6.7E-10 80.3 26.5 250 283-575 1454-1704(1710)
162 PF12895 Apc3: Anaphase-promot 98.6 2.9E-07 6.4E-12 66.3 8.9 83 216-313 2-84 (84)
163 KOG1070 rRNA processing protei 98.6 3.8E-05 8.3E-10 79.7 26.5 211 241-487 1454-1664(1710)
164 KOG0543 FKBP-type peptidyl-pro 98.6 1.9E-06 4.1E-11 77.8 14.9 138 206-359 211-356 (397)
165 PRK10803 tol-pal system protei 98.6 2E-06 4.4E-11 76.1 14.9 102 376-487 145-247 (263)
166 COG4105 ComL DNA uptake lipopr 98.6 3.6E-05 7.8E-10 65.6 21.3 171 119-310 35-227 (254)
167 PF13414 TPR_11: TPR repeat; P 98.6 4.9E-07 1.1E-11 62.4 8.6 64 245-316 3-67 (69)
168 PF13414 TPR_11: TPR repeat; P 98.6 5.4E-07 1.2E-11 62.2 8.7 64 287-358 3-67 (69)
169 PF10345 Cohesin_load: Cohesin 98.6 0.0014 3.1E-08 67.0 52.2 434 124-571 106-606 (608)
170 KOG3081 Vesicle coat complex C 98.6 9.2E-05 2E-09 62.9 22.7 246 171-482 17-266 (299)
171 KOG1586 Protein required for f 98.6 3.5E-05 7.7E-10 63.9 19.8 197 213-443 24-223 (288)
172 PRK10803 tol-pal system protei 98.6 4.5E-06 9.9E-11 73.9 16.0 104 246-359 143-247 (263)
173 COG4105 ComL DNA uptake lipopr 98.5 5.5E-05 1.2E-09 64.5 21.4 174 328-521 33-225 (254)
174 KOG0543 FKBP-type peptidyl-pro 98.5 2.1E-06 4.6E-11 77.5 13.3 136 377-528 212-354 (397)
175 KOG2471 TPR repeat-containing 98.5 0.00029 6.2E-09 65.2 26.8 408 121-568 103-681 (696)
176 KOG1464 COP9 signalosome, subu 98.5 3.8E-05 8.2E-10 65.2 19.1 242 176-429 41-286 (440)
177 PF13432 TPR_16: Tetratricopep 98.5 6.5E-07 1.4E-11 60.9 7.4 60 420-487 2-61 (65)
178 cd00189 TPR Tetratricopeptide 98.5 1.3E-06 2.8E-11 65.3 9.8 96 247-358 2-97 (100)
179 KOG4555 TPR repeat-containing 98.5 2.3E-05 4.9E-10 58.4 15.3 101 119-232 44-144 (175)
180 COG4785 NlpI Lipoprotein NlpI, 98.5 3.6E-05 7.8E-10 63.0 17.8 204 242-486 62-266 (297)
181 KOG1586 Protein required for f 98.5 5.9E-05 1.3E-09 62.6 19.2 200 341-577 26-230 (288)
182 KOG3081 Vesicle coat complex C 98.5 0.00024 5.3E-09 60.5 23.3 241 213-521 18-262 (299)
183 KOG4555 TPR repeat-containing 98.5 2.9E-05 6.2E-10 57.8 15.2 100 289-402 45-144 (175)
184 PF08631 SPO22: Meiosis protei 98.4 0.00076 1.7E-08 61.3 27.7 254 173-443 4-274 (278)
185 cd00189 TPR Tetratricopeptide 98.4 2.2E-06 4.8E-11 64.0 9.6 96 205-316 2-97 (100)
186 COG1729 Uncharacterized protei 98.4 6.1E-06 1.3E-10 71.0 11.6 102 121-233 144-245 (262)
187 PF13432 TPR_16: Tetratricopep 98.4 2E-06 4.3E-11 58.5 7.2 59 250-316 2-60 (65)
188 PF08631 SPO22: Meiosis protei 98.3 0.0014 3.1E-08 59.5 27.3 255 213-485 3-274 (278)
189 KOG1464 COP9 signalosome, subu 98.3 0.0001 2.2E-09 62.7 17.8 242 130-387 39-286 (440)
190 COG1729 Uncharacterized protei 98.3 9.5E-06 2.1E-10 69.8 11.9 102 418-530 144-245 (262)
191 KOG2796 Uncharacterized conser 98.3 0.00044 9.6E-09 58.7 20.9 156 204-383 178-333 (366)
192 COG4785 NlpI Lipoprotein NlpI, 98.3 0.00055 1.2E-08 56.4 20.7 230 158-431 61-291 (297)
193 COG4235 Cytochrome c biogenesi 98.3 4.4E-05 9.6E-10 66.7 15.6 102 241-358 152-256 (287)
194 COG4235 Cytochrome c biogenesi 98.3 2E-05 4.4E-10 68.7 13.2 106 452-573 151-258 (287)
195 PRK10153 DNA-binding transcrip 98.3 4.7E-05 1E-09 74.9 17.0 137 206-372 342-489 (517)
196 PRK10153 DNA-binding transcrip 98.2 6.8E-05 1.5E-09 73.7 17.4 133 245-402 339-482 (517)
197 COG3898 Uncharacterized membra 98.2 0.0035 7.5E-08 56.7 30.3 298 169-528 91-391 (531)
198 COG4700 Uncharacterized protei 98.2 0.00023 5.1E-09 56.9 16.7 135 245-403 89-223 (251)
199 PF13512 TPR_18: Tetratricopep 98.2 5.5E-05 1.2E-09 58.6 12.9 104 374-487 11-129 (142)
200 COG4700 Uncharacterized protei 98.2 0.00033 7.2E-09 56.1 17.3 132 416-570 90-221 (251)
201 PRK15331 chaperone protein Sic 98.2 1.9E-05 4.1E-10 62.6 10.5 102 241-358 33-134 (165)
202 PF13512 TPR_18: Tetratricopep 98.2 5.3E-05 1.2E-09 58.7 12.6 104 119-233 11-129 (142)
203 KOG2796 Uncharacterized conser 98.2 0.0005 1.1E-08 58.4 18.8 139 162-316 177-315 (366)
204 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.8E-05 1.3E-09 70.7 14.8 120 209-355 175-294 (395)
205 PRK15331 chaperone protein Sic 98.2 2.3E-05 4.9E-10 62.2 9.7 101 114-231 33-133 (165)
206 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.9E-05 1.7E-09 69.8 14.9 121 167-313 174-294 (395)
207 COG5159 RPN6 26S proteasome re 98.1 0.0017 3.7E-08 55.9 21.1 227 250-488 8-237 (421)
208 PRK11906 transcriptional regul 98.1 0.00026 5.6E-09 66.2 16.1 131 207-358 259-401 (458)
209 PF14559 TPR_19: Tetratricopep 98.1 1.9E-05 4.1E-10 54.2 6.8 55 128-192 1-55 (68)
210 PF13374 TPR_10: Tetratricopep 98.1 1.1E-05 2.3E-10 49.1 4.9 41 457-497 2-42 (42)
211 KOG2471 TPR repeat-containing 98.0 0.00046 1E-08 63.9 17.1 319 164-511 19-381 (696)
212 COG3898 Uncharacterized membra 98.0 0.01 2.2E-07 53.8 31.4 300 122-485 88-391 (531)
213 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.9E-05 8.5E-10 71.3 10.0 72 324-402 70-141 (453)
214 PRK11906 transcriptional regul 98.0 0.00022 4.9E-09 66.5 14.4 162 121-313 258-433 (458)
215 KOG4234 TPR repeat-containing 98.0 0.00025 5.4E-09 57.5 12.5 100 206-316 98-197 (271)
216 PF10300 DUF3808: Protein of u 98.0 0.022 4.8E-07 55.9 30.9 182 340-547 199-394 (468)
217 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 5.9E-05 1.3E-09 70.2 10.1 72 282-358 70-141 (453)
218 KOG4234 TPR repeat-containing 98.0 0.00013 2.7E-09 59.1 10.4 105 116-232 93-197 (271)
219 COG0457 NrfG FOG: TPR repeat [ 97.9 0.0094 2E-07 53.4 24.6 207 245-487 59-266 (291)
220 COG0457 NrfG FOG: TPR repeat [ 97.9 0.007 1.5E-07 54.2 23.8 204 119-358 60-265 (291)
221 PF14559 TPR_19: Tetratricopep 97.9 4.2E-05 9E-10 52.5 6.7 53 256-316 2-54 (68)
222 PF13374 TPR_10: Tetratricopep 97.9 2.6E-05 5.6E-10 47.3 4.9 41 415-455 2-42 (42)
223 PF13371 TPR_9: Tetratricopept 97.9 7.6E-05 1.6E-09 52.0 7.9 59 421-487 1-59 (73)
224 KOG1463 26S proteasome regulat 97.9 0.015 3.3E-07 51.6 29.4 300 122-443 8-315 (411)
225 KOG2041 WD40 repeat protein [G 97.9 0.013 2.9E-07 57.2 24.4 124 205-355 694-822 (1189)
226 PF13371 TPR_9: Tetratricopept 97.8 0.00012 2.7E-09 50.9 8.1 57 252-316 2-58 (73)
227 KOG2610 Uncharacterized conser 97.8 0.022 4.7E-07 50.7 23.5 169 121-314 106-274 (491)
228 PF10300 DUF3808: Protein of u 97.8 0.05 1.1E-06 53.5 34.3 177 296-497 197-387 (468)
229 PF12968 DUF3856: Domain of Un 97.8 0.007 1.5E-07 44.6 15.5 121 287-407 7-134 (144)
230 KOG4648 Uncharacterized conser 97.7 0.0002 4.4E-09 63.0 9.0 95 248-358 100-194 (536)
231 PF02259 FAT: FAT domain; Int 97.7 0.052 1.1E-06 51.9 27.5 284 252-574 5-341 (352)
232 KOG0985 Vesicle coat protein c 97.7 0.09 2E-06 54.1 31.0 214 204-480 1105-1335(1666)
233 COG2976 Uncharacterized protei 97.6 0.0074 1.6E-07 49.3 15.7 100 329-444 89-188 (207)
234 KOG2041 WD40 repeat protein [G 97.6 0.078 1.7E-06 52.1 30.9 184 159-398 689-877 (1189)
235 PF04184 ST7: ST7 protein; In 97.6 0.029 6.3E-07 53.0 21.6 126 255-398 178-320 (539)
236 COG5159 RPN6 26S proteasome re 97.6 0.037 8.1E-07 48.0 27.5 228 122-360 7-237 (421)
237 PF13281 DUF4071: Domain of un 97.6 0.054 1.2E-06 50.4 23.0 204 219-444 115-334 (374)
238 KOG4648 Uncharacterized conser 97.6 0.00028 6.1E-09 62.2 7.8 95 377-487 101-195 (536)
239 PF09986 DUF2225: Uncharacteri 97.6 0.0029 6.3E-08 54.3 13.8 100 341-443 89-193 (214)
240 PF13281 DUF4071: Domain of un 97.6 0.031 6.6E-07 51.9 20.8 204 134-358 115-334 (374)
241 PF12968 DUF3856: Domain of Un 97.6 0.018 3.8E-07 42.6 17.0 117 245-362 7-133 (144)
242 COG2976 Uncharacterized protei 97.5 0.011 2.3E-07 48.4 15.4 100 374-487 90-189 (207)
243 KOG1463 26S proteasome regulat 97.5 0.059 1.3E-06 48.1 29.0 297 169-483 11-313 (411)
244 PF03704 BTAD: Bacterial trans 97.5 0.0048 1E-07 50.0 14.0 117 118-241 6-134 (146)
245 PF03704 BTAD: Bacterial trans 97.5 0.006 1.3E-07 49.4 14.3 109 209-325 12-134 (146)
246 KOG4642 Chaperone-dependent E3 97.5 0.00098 2.1E-08 55.8 9.3 103 117-236 9-111 (284)
247 PF09986 DUF2225: Uncharacteri 97.5 0.0023 5E-08 54.9 11.9 100 175-274 90-194 (214)
248 PF13176 TPR_7: Tetratricopept 97.4 0.00029 6.2E-09 40.7 4.2 33 544-576 1-33 (36)
249 KOG1550 Extracellular protein 97.4 0.066 1.4E-06 54.1 23.1 280 134-485 228-537 (552)
250 PF04184 ST7: ST7 protein; In 97.4 0.038 8.2E-07 52.3 19.4 134 292-441 173-321 (539)
251 KOG4642 Chaperone-dependent E3 97.4 0.0019 4E-08 54.2 9.6 98 377-490 14-111 (284)
252 PF02259 FAT: FAT domain; Int 97.4 0.14 3.1E-06 48.8 30.4 130 326-469 143-304 (352)
253 KOG0545 Aryl-hydrocarbon recep 97.4 0.0062 1.3E-07 51.4 12.4 106 203-316 178-293 (329)
254 KOG0545 Aryl-hydrocarbon recep 97.3 0.0037 8.1E-08 52.7 10.4 113 458-579 179-301 (329)
255 KOG2610 Uncharacterized conser 97.3 0.13 2.9E-06 45.9 29.1 165 169-356 110-274 (491)
256 KOG2053 Mitochondrial inherita 97.2 0.32 6.9E-06 49.6 39.3 197 124-354 15-215 (932)
257 PF00515 TPR_1: Tetratricopept 97.2 0.00049 1.1E-08 39.2 3.2 32 543-574 2-33 (34)
258 PF10602 RPN7: 26S proteasome 97.2 0.033 7.1E-07 46.4 14.9 111 283-402 32-142 (177)
259 PF10602 RPN7: 26S proteasome 97.1 0.038 8.3E-07 46.0 15.2 110 325-443 32-141 (177)
260 COG3118 Thioredoxin domain-con 97.1 0.088 1.9E-06 46.4 17.5 130 120-274 136-265 (304)
261 KOG0985 Vesicle coat protein c 97.1 0.43 9.4E-06 49.5 35.0 213 121-397 1107-1336(1666)
262 PF13428 TPR_14: Tetratricopep 97.1 0.0018 3.9E-08 39.4 5.2 42 246-295 2-43 (44)
263 PF13176 TPR_7: Tetratricopept 97.1 0.002 4.3E-08 37.1 4.9 31 331-361 1-31 (36)
264 KOG2053 Mitochondrial inherita 97.0 0.47 1E-05 48.5 30.0 229 215-485 21-254 (932)
265 PF12862 Apc5: Anaphase-promot 97.0 0.012 2.6E-07 43.1 10.1 82 425-508 8-90 (94)
266 KOG1550 Extracellular protein 97.0 0.47 1E-05 48.1 25.9 280 178-528 228-537 (552)
267 PF07719 TPR_2: Tetratricopept 97.0 0.00083 1.8E-08 38.2 2.8 32 543-574 2-33 (34)
268 PF13428 TPR_14: Tetratricopep 97.0 0.0031 6.7E-08 38.4 5.5 41 417-465 3-43 (44)
269 KOG0551 Hsp90 co-chaperone CNS 96.9 0.022 4.8E-07 50.6 12.4 106 200-317 78-183 (390)
270 PF12862 Apc5: Anaphase-promot 96.9 0.021 4.5E-07 41.8 10.4 81 255-337 8-89 (94)
271 KOG1538 Uncharacterized conser 96.9 0.4 8.7E-06 47.0 21.1 189 207-441 636-830 (1081)
272 PF13431 TPR_17: Tetratricopep 96.9 0.0012 2.6E-08 37.4 2.8 32 268-307 2-33 (34)
273 KOG0551 Hsp90 co-chaperone CNS 96.8 0.017 3.6E-07 51.3 10.6 105 327-445 79-183 (390)
274 PF05843 Suf: Suppressor of fo 96.8 0.028 6.1E-07 51.1 12.6 136 417-574 3-139 (280)
275 PF00515 TPR_1: Tetratricopept 96.8 0.0049 1.1E-07 34.9 4.9 30 329-358 1-30 (34)
276 PF13431 TPR_17: Tetratricopep 96.7 0.0014 3.1E-08 37.0 2.4 32 141-182 2-33 (34)
277 PF13181 TPR_8: Tetratricopept 96.6 0.0038 8.3E-08 35.4 3.7 31 543-573 2-32 (34)
278 PF06552 TOM20_plant: Plant sp 96.6 0.019 4.2E-07 46.4 8.6 92 134-235 7-105 (186)
279 PF07719 TPR_2: Tetratricopept 96.6 0.0068 1.5E-07 34.3 4.6 30 204-233 2-31 (34)
280 PF06552 TOM20_plant: Plant sp 96.5 0.025 5.5E-07 45.8 8.9 101 261-370 7-114 (186)
281 PF05843 Suf: Suppressor of fo 96.5 0.078 1.7E-06 48.3 13.4 134 247-403 3-137 (280)
282 KOG3783 Uncharacterized conser 96.4 0.97 2.1E-05 43.7 27.0 244 203-487 267-521 (546)
283 PF10579 Rapsyn_N: Rapsyn N-te 96.3 0.089 1.9E-06 35.9 9.2 71 118-195 6-76 (80)
284 KOG1538 Uncharacterized conser 96.3 1.1 2.4E-05 44.1 19.9 149 292-481 637-797 (1081)
285 PF13181 TPR_8: Tetratricopept 96.2 0.017 3.6E-07 32.6 4.8 30 330-359 2-31 (34)
286 PF07079 DUF1347: Protein of u 96.1 1.3 2.8E-05 41.8 38.5 139 119-275 7-158 (549)
287 KOG4322 Anaphase-promoting com 95.8 1.6 3.5E-05 40.8 23.0 185 323-516 267-456 (482)
288 KOG0890 Protein kinase of the 95.6 6.1 0.00013 45.8 29.8 110 453-573 1666-1786(2382)
289 KOG4814 Uncharacterized conser 95.6 2.7 5.8E-05 41.6 36.4 103 121-234 357-459 (872)
290 PF13174 TPR_6: Tetratricopept 95.4 0.013 2.8E-07 32.8 2.2 31 543-573 1-31 (33)
291 PF10579 Rapsyn_N: Rapsyn N-te 95.2 0.53 1.1E-05 32.3 9.5 66 250-320 11-76 (80)
292 PF04910 Tcf25: Transcriptiona 95.2 2.9 6.3E-05 39.6 18.6 151 241-403 36-223 (360)
293 COG4649 Uncharacterized protei 95.2 1.4 3E-05 35.7 14.9 124 427-570 70-195 (221)
294 PF13174 TPR_6: Tetratricopept 95.1 0.04 8.6E-07 30.7 3.6 29 459-487 2-30 (33)
295 COG3118 Thioredoxin domain-con 95.1 2.3 5E-05 37.9 18.4 127 166-315 138-264 (304)
296 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.091 2E-06 30.3 4.8 36 458-493 2-37 (38)
297 PF08424 NRDE-2: NRDE-2, neces 94.9 3.2 7E-05 38.7 19.1 149 410-572 14-184 (321)
298 KOG0376 Serine-threonine phosp 94.8 0.069 1.5E-06 50.3 6.0 93 250-358 9-101 (476)
299 PF10516 SHNi-TPR: SHNi-TPR; 94.7 0.11 2.5E-06 29.9 4.6 35 416-450 2-36 (38)
300 PF04910 Tcf25: Transcriptiona 94.6 4.2 9.1E-05 38.6 21.3 153 325-487 36-223 (360)
301 KOG0376 Serine-threonine phosp 94.6 0.053 1.2E-06 51.0 4.7 96 120-232 6-101 (476)
302 KOG1914 mRNA cleavage and poly 94.5 5 0.00011 39.1 39.5 101 120-238 22-122 (656)
303 COG0790 FOG: TPR repeat, SEL1 94.5 3.9 8.4E-05 37.7 22.4 167 128-343 51-236 (292)
304 KOG4322 Anaphase-promoting com 94.5 4.4 9.5E-05 38.1 24.1 197 240-443 268-470 (482)
305 PF09613 HrpB1_HrpK: Bacterial 94.5 0.82 1.8E-05 36.7 10.4 91 113-220 5-95 (160)
306 KOG3783 Uncharacterized conser 94.4 5.5 0.00012 38.8 28.8 274 208-530 236-521 (546)
307 COG0790 FOG: TPR repeat, SEL1 94.1 4.7 0.0001 37.2 20.4 167 255-471 51-236 (292)
308 PF09613 HrpB1_HrpK: Bacterial 94.1 0.86 1.9E-05 36.6 9.9 90 158-262 6-95 (160)
309 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.071 1.5E-06 33.6 3.1 37 543-579 2-38 (53)
310 KOG1308 Hsp70-interacting prot 94.0 0.025 5.3E-07 50.6 1.4 90 253-358 122-211 (377)
311 PRK14707 hypothetical protein; 94.0 15 0.00033 42.4 25.8 301 167-475 836-1143(2710)
312 PF04190 DUF410: Protein of un 93.9 4.6 0.0001 36.3 26.1 205 336-557 17-243 (260)
313 KOG1308 Hsp70-interacting prot 93.9 0.038 8.1E-07 49.5 2.2 100 116-232 112-211 (377)
314 PF11817 Foie-gras_1: Foie gra 93.8 4.7 0.0001 36.0 24.0 187 206-398 13-243 (247)
315 PF12739 TRAPPC-Trs85: ER-Golg 93.8 7.2 0.00016 38.0 19.2 178 375-574 210-402 (414)
316 PF11207 DUF2989: Protein of u 93.6 3.1 6.6E-05 35.0 12.6 64 281-349 135-198 (203)
317 PF04781 DUF627: Protein of un 93.4 2.5 5.4E-05 31.5 11.0 101 124-231 2-106 (111)
318 COG4649 Uncharacterized protei 93.3 3.7 8.1E-05 33.3 15.7 133 121-273 61-195 (221)
319 KOG3364 Membrane protein invol 93.3 0.34 7.4E-06 37.1 6.0 76 498-578 31-107 (149)
320 PF11207 DUF2989: Protein of u 93.2 4.5 9.7E-05 34.1 13.1 80 427-519 118-197 (203)
321 PF04190 DUF410: Protein of un 93.2 6.1 0.00013 35.5 22.3 215 113-342 5-241 (260)
322 KOG0687 26S proteasome regulat 93.2 5.7 0.00012 35.9 14.1 128 266-404 85-212 (393)
323 PRK14707 hypothetical protein; 93.2 21 0.00045 41.5 27.2 297 208-515 836-1141(2710)
324 KOG4507 Uncharacterized conser 93.1 0.2 4.3E-06 48.4 5.7 96 206-316 610-705 (886)
325 PF08424 NRDE-2: NRDE-2, neces 93.0 7.9 0.00017 36.2 20.0 148 283-445 15-184 (321)
326 PF14561 TPR_20: Tetratricopep 92.8 1.3 2.8E-05 31.9 8.4 66 158-228 18-83 (90)
327 KOG0890 Protein kinase of the 92.7 25 0.00055 41.2 35.0 111 411-531 1666-1786(2382)
328 PF00244 14-3-3: 14-3-3 protei 92.6 6.9 0.00015 34.5 20.3 185 248-447 4-201 (236)
329 PF07721 TPR_4: Tetratricopept 92.6 0.13 2.9E-06 26.8 2.3 25 543-567 2-26 (26)
330 smart00028 TPR Tetratricopepti 92.5 0.093 2E-06 28.7 1.8 31 543-573 2-32 (34)
331 PF14853 Fis1_TPR_C: Fis1 C-te 92.4 1.4 3.1E-05 27.8 7.1 30 458-487 2-31 (53)
332 COG3629 DnrI DNA-binding trans 92.4 2.2 4.8E-05 38.2 10.9 76 414-497 152-227 (280)
333 PF00244 14-3-3: 14-3-3 protei 92.4 7.3 0.00016 34.4 19.9 184 120-319 3-201 (236)
334 PF11817 Foie-gras_1: Foie gra 92.4 7.7 0.00017 34.6 22.9 92 344-441 153-244 (247)
335 KOG0687 26S proteasome regulat 92.3 8.5 0.00018 34.9 14.1 112 369-487 100-211 (393)
336 TIGR02561 HrpB1_HrpK type III 92.1 2.4 5.1E-05 33.6 9.4 88 115-219 7-94 (153)
337 PF12854 PPR_1: PPR repeat 92.1 0.17 3.8E-06 28.5 2.5 27 542-568 7-33 (34)
338 TIGR02561 HrpB1_HrpK type III 91.3 2.4 5.3E-05 33.5 8.7 87 160-261 8-94 (153)
339 KOG1497 COP9 signalosome, subu 91.2 11 0.00024 34.0 17.2 111 456-570 102-212 (399)
340 PF07721 TPR_4: Tetratricopept 91.2 0.35 7.6E-06 25.1 2.9 23 459-481 3-25 (26)
341 smart00028 TPR Tetratricopepti 91.1 0.3 6.6E-06 26.5 3.0 29 288-316 2-30 (34)
342 PF14561 TPR_20: Tetratricopep 91.0 4.5 9.7E-05 29.2 9.9 33 411-443 18-50 (90)
343 PF04053 Coatomer_WDAD: Coatom 91.0 17 0.00036 35.7 16.3 120 339-516 271-390 (443)
344 KOG1258 mRNA processing protei 91.0 18 0.00038 36.0 38.4 398 129-577 52-476 (577)
345 KOG1914 mRNA cleavage and poly 91.0 17 0.00036 35.7 35.6 104 158-278 16-120 (656)
346 KOG2114 Vacuolar assembly/sort 90.8 23 0.00049 36.9 19.4 49 185-233 350-398 (933)
347 KOG2908 26S proteasome regulat 90.8 6 0.00013 36.0 11.6 96 129-231 86-182 (380)
348 PRK10941 hypothetical protein; 90.7 4.8 0.0001 36.2 11.2 73 414-499 180-252 (269)
349 PF12739 TRAPPC-Trs85: ER-Golg 90.5 18 0.00039 35.3 19.3 180 246-447 209-402 (414)
350 KOG0686 COP9 signalosome, subu 90.5 4.8 0.0001 37.6 11.0 107 200-313 147-255 (466)
351 COG5187 RPN7 26S proteasome re 90.4 13 0.00027 33.2 15.1 132 262-404 92-223 (412)
352 KOG4521 Nuclear pore complex, 90.3 23 0.00051 38.2 16.8 193 332-572 923-1133(1480)
353 COG3629 DnrI DNA-binding trans 89.9 12 0.00026 33.7 12.9 75 243-325 151-225 (280)
354 PF15015 NYD-SP12_N: Spermatog 89.6 5.8 0.00013 37.2 10.9 103 207-317 180-292 (569)
355 cd02682 MIT_AAA_Arch MIT: doma 89.5 5.2 0.00011 27.5 8.1 44 116-159 4-47 (75)
356 KOG4507 Uncharacterized conser 89.3 1 2.3E-05 43.8 6.3 90 383-487 617-706 (886)
357 KOG4014 Uncharacterized conser 89.2 11 0.00024 31.0 13.2 164 161-362 33-237 (248)
358 PF10952 DUF2753: Protein of u 89.2 8.1 0.00018 29.3 10.5 73 206-278 4-83 (140)
359 KOG0508 Ankyrin repeat protein 88.7 0.97 2.1E-05 42.7 5.5 136 415-554 245-391 (615)
360 PF12854 PPR_1: PPR repeat 88.7 0.95 2.1E-05 25.4 3.6 28 328-355 6-33 (34)
361 KOG1258 mRNA processing protei 88.6 28 0.0006 34.7 40.5 363 121-529 82-470 (577)
362 PF13041 PPR_2: PPR repeat fam 88.6 2.4 5.2E-05 26.3 5.8 28 458-485 4-31 (50)
363 KOG0686 COP9 signalosome, subu 88.6 11 0.00023 35.5 11.7 107 370-483 147-255 (466)
364 PRK10941 hypothetical protein; 88.5 7.6 0.00016 35.0 10.8 67 243-317 179-245 (269)
365 PF01535 PPR: PPR repeat; Int 88.2 0.55 1.2E-05 25.4 2.4 28 544-571 2-29 (31)
366 PF13041 PPR_2: PPR repeat fam 88.0 2.8 6E-05 26.0 5.9 30 329-358 3-32 (50)
367 PF04781 DUF627: Protein of un 87.7 9.8 0.00021 28.5 11.7 101 335-443 2-106 (111)
368 PF08626 TRAPPC9-Trs120: Trans 87.6 57 0.0012 37.1 19.7 155 328-488 241-476 (1185)
369 PF04053 Coatomer_WDAD: Coatom 87.3 9.4 0.0002 37.4 11.6 25 205-229 349-373 (443)
370 PF15015 NYD-SP12_N: Spermatog 87.3 12 0.00027 35.2 11.4 102 336-445 183-292 (569)
371 COG3947 Response regulator con 87.1 9.1 0.0002 34.1 10.0 73 417-497 281-353 (361)
372 cd02683 MIT_1 MIT: domain cont 86.8 8.1 0.00018 26.8 7.9 37 117-153 5-41 (77)
373 COG3947 Response regulator con 86.8 20 0.00044 32.1 11.8 74 246-327 280-353 (361)
374 COG5187 RPN7 26S proteasome re 86.8 23 0.00049 31.7 17.6 133 344-487 90-222 (412)
375 TIGR03504 FimV_Cterm FimV C-te 85.9 1.4 3.1E-05 26.5 3.3 26 546-571 3-28 (44)
376 cd02681 MIT_calpain7_1 MIT: do 85.9 9.3 0.0002 26.4 8.8 36 116-151 4-39 (76)
377 TIGR03504 FimV_Cterm FimV C-te 85.9 1.8 3.9E-05 26.1 3.7 25 461-485 3-27 (44)
378 cd02682 MIT_AAA_Arch MIT: doma 85.9 8 0.00017 26.6 7.3 43 329-371 6-48 (75)
379 PF10255 Paf67: RNA polymerase 85.5 1.5 3.3E-05 41.6 5.0 75 501-576 124-198 (404)
380 PF09670 Cas_Cas02710: CRISPR- 85.5 36 0.00078 32.7 16.8 139 119-276 132-272 (379)
381 PF10255 Paf67: RNA polymerase 85.4 1.8 4E-05 41.1 5.5 74 246-319 123-196 (404)
382 KOG2908 26S proteasome regulat 85.2 31 0.00066 31.7 13.8 95 338-437 84-179 (380)
383 KOG0508 Ankyrin repeat protein 85.0 0.78 1.7E-05 43.2 2.8 72 440-511 320-391 (615)
384 TIGR00756 PPR pentatricopeptid 85.0 1.7 3.6E-05 24.1 3.4 28 544-571 2-29 (35)
385 KOG3824 Huntingtin interacting 84.9 2.7 5.9E-05 37.5 5.9 67 116-192 114-180 (472)
386 PF10952 DUF2753: Protein of u 83.9 17 0.00036 27.7 11.4 73 290-362 4-83 (140)
387 KOG0128 RNA-binding protein SA 83.4 62 0.0014 33.8 36.1 228 158-400 109-339 (881)
388 cd02678 MIT_VPS4 MIT: domain c 83.1 13 0.00028 25.7 8.2 36 117-152 5-40 (75)
389 KOG2581 26S proteasome regulat 83.0 43 0.00093 31.7 20.2 144 126-275 134-277 (493)
390 PF01535 PPR: PPR repeat; Int 82.7 2.4 5.2E-05 22.7 3.3 27 331-357 2-28 (31)
391 PF13812 PPR_3: Pentatricopept 82.3 2.7 5.8E-05 23.2 3.5 29 543-571 2-30 (34)
392 KOG3024 Uncharacterized conser 82.1 37 0.00081 30.3 12.3 65 503-568 89-153 (312)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 80.6 25 0.00054 27.4 10.3 87 343-442 40-126 (126)
394 smart00101 14_3_3 14-3-3 homol 80.4 41 0.0009 29.8 25.0 183 121-317 4-201 (244)
395 PF07079 DUF1347: Protein of u 79.9 60 0.0013 31.4 39.4 73 159-233 76-158 (549)
396 KOG2114 Vacuolar assembly/sort 79.8 85 0.0018 33.0 17.5 49 351-402 349-397 (933)
397 KOG3824 Huntingtin interacting 79.8 7.6 0.00017 34.8 6.7 57 252-316 123-179 (472)
398 COG4976 Predicted methyltransf 79.3 3.6 7.8E-05 35.2 4.4 54 172-232 5-58 (287)
399 PF04212 MIT: MIT (microtubule 79.2 17 0.00036 24.6 8.6 37 119-155 6-42 (69)
400 KOG3364 Membrane protein invol 79.1 29 0.00062 27.2 11.6 69 159-232 29-100 (149)
401 smart00745 MIT Microtubule Int 79.1 18 0.0004 25.0 8.6 37 116-152 6-42 (77)
402 KOG4563 Cell cycle-regulated h 79.0 10 0.00023 34.9 7.5 68 113-182 36-103 (400)
403 PF09670 Cas_Cas02710: CRISPR- 78.9 64 0.0014 31.1 17.8 140 418-576 134-275 (379)
404 TIGR00756 PPR pentatricopeptid 78.8 5.2 0.00011 22.0 4.0 27 331-357 2-28 (35)
405 PRK15180 Vi polysaccharide bio 78.5 10 0.00022 36.3 7.5 129 121-274 292-420 (831)
406 KOG2561 Adaptor protein NUB1, 78.2 66 0.0014 30.8 12.6 115 206-320 166-300 (568)
407 PF07720 TPR_3: Tetratricopept 77.0 4.9 0.00011 23.0 3.2 30 543-572 2-33 (36)
408 COG4976 Predicted methyltransf 76.7 5.7 0.00012 34.0 4.8 57 126-192 3-59 (287)
409 KOG4563 Cell cycle-regulated h 76.0 9 0.00019 35.3 6.2 63 205-267 43-105 (400)
410 cd02679 MIT_spastin MIT: domai 75.9 15 0.00034 25.6 6.1 58 505-574 14-71 (79)
411 KOG2561 Adaptor protein NUB1, 75.2 43 0.00094 32.0 10.4 117 332-448 166-300 (568)
412 cd02656 MIT MIT: domain contai 74.7 25 0.00054 24.2 8.2 35 118-152 6-40 (75)
413 cd02683 MIT_1 MIT: domain cont 74.5 26 0.00057 24.4 7.2 36 333-368 10-45 (77)
414 PF13812 PPR_3: Pentatricopept 74.0 10 0.00022 20.8 4.2 28 330-357 2-29 (34)
415 KOG2422 Uncharacterized conser 73.1 1.1E+02 0.0023 30.8 15.5 175 215-403 250-449 (665)
416 KOG1310 WD40 repeat protein [G 72.9 27 0.00059 34.2 8.8 102 115-230 371-472 (758)
417 COG2178 Predicted RNA-binding 72.9 56 0.0012 27.5 11.5 114 377-496 33-160 (204)
418 PHA02537 M terminase endonucle 72.4 22 0.00047 31.0 7.5 109 464-575 90-211 (230)
419 KOG2581 26S proteasome regulat 72.4 91 0.002 29.7 25.3 141 255-403 136-277 (493)
420 PF08626 TRAPPC9-Trs120: Trans 72.1 1.9E+02 0.0041 33.2 22.9 157 286-446 241-476 (1185)
421 PF07163 Pex26: Pex26 protein; 71.6 77 0.0017 28.5 12.5 139 121-268 38-181 (309)
422 KOG4014 Uncharacterized conser 71.0 60 0.0013 27.0 13.6 134 159-321 65-238 (248)
423 COG2178 Predicted RNA-binding 70.3 65 0.0014 27.1 10.7 111 332-451 32-157 (204)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 69.8 51 0.0011 25.7 12.1 86 217-314 40-126 (126)
425 KOG1497 COP9 signalosome, subu 69.7 91 0.002 28.6 21.1 111 370-484 100-211 (399)
426 cd02684 MIT_2 MIT: domain cont 69.2 35 0.00076 23.6 8.3 47 118-165 6-52 (75)
427 cd02677 MIT_SNX15 MIT: domain 68.7 36 0.00078 23.5 7.8 36 117-152 5-40 (75)
428 cd02681 MIT_calpain7_1 MIT: do 68.5 37 0.00079 23.6 7.8 30 418-447 9-38 (76)
429 PF07163 Pex26: Pex26 protein; 68.1 92 0.002 28.0 13.8 136 332-481 38-182 (309)
430 KOG4521 Nuclear pore complex, 67.8 2E+02 0.0044 31.8 19.2 185 288-487 921-1133(1480)
431 PF12309 KBP_C: KIF-1 binding 67.5 1.2E+02 0.0026 29.1 17.2 170 387-577 138-344 (371)
432 cd02680 MIT_calpain7_2 MIT: do 67.3 15 0.00032 25.3 4.4 33 118-150 6-38 (75)
433 PF10373 EST1_DNA_bind: Est1 D 66.4 1E+02 0.0022 28.0 12.5 62 264-341 1-62 (278)
434 cd02679 MIT_spastin MIT: domai 66.1 43 0.00092 23.4 7.0 34 419-452 12-45 (79)
435 KOG0276 Vesicle coat complex C 66.1 45 0.00098 33.4 8.8 50 382-444 646-695 (794)
436 PF07720 TPR_3: Tetratricopept 65.5 23 0.0005 20.2 4.6 23 205-227 3-25 (36)
437 PF10858 DUF2659: Protein of u 65.3 73 0.0016 25.9 13.9 130 217-358 71-200 (220)
438 PF05053 Menin: Menin; InterP 64.8 1.6E+02 0.0035 29.6 13.8 70 375-447 279-350 (618)
439 KOG4814 Uncharacterized conser 64.3 1.7E+02 0.0038 29.9 39.5 106 203-318 354-459 (872)
440 smart00745 MIT Microtubule Int 64.0 45 0.00098 23.0 7.8 34 335-368 14-47 (77)
441 PF04212 MIT: MIT (microtubule 63.9 42 0.00091 22.6 7.2 32 418-449 8-39 (69)
442 KOG2422 Uncharacterized conser 62.6 1.8E+02 0.0039 29.4 17.9 177 300-487 251-449 (665)
443 PF05053 Menin: Menin; InterP 62.3 1.8E+02 0.0039 29.3 13.8 57 303-362 295-351 (618)
444 COG1747 Uncharacterized N-term 61.9 1.7E+02 0.0037 29.0 16.9 90 379-487 72-161 (711)
445 PF10373 EST1_DNA_bind: Est1 D 60.5 1.3E+02 0.0029 27.2 11.7 62 434-511 1-62 (278)
446 COG3914 Spy Predicted O-linked 60.3 1.8E+02 0.0038 29.4 11.6 111 450-578 61-178 (620)
447 PHA02537 M terminase endonucle 59.4 1.2E+02 0.0025 26.7 9.4 104 339-444 93-207 (230)
448 PF06957 COPI_C: Coatomer (COP 58.9 88 0.0019 30.4 9.3 35 116-150 202-236 (422)
449 PRK09169 hypothetical protein; 58.5 4.1E+02 0.009 32.3 24.5 12 377-388 586-597 (2316)
450 smart00101 14_3_3 14-3-3 homol 58.1 1.4E+02 0.003 26.6 23.9 183 333-531 5-202 (244)
451 COG4455 ImpE Protein of avirul 57.7 73 0.0016 27.5 7.5 59 123-191 6-64 (273)
452 KOG3807 Predicted membrane pro 57.2 1.6E+02 0.0035 27.2 17.0 55 296-360 193-247 (556)
453 PF10858 DUF2659: Protein of u 56.0 1.1E+02 0.0024 24.9 16.2 129 301-443 71-199 (220)
454 PRK15180 Vi polysaccharide bio 55.6 35 0.00076 33.0 6.0 121 427-572 301-421 (831)
455 PRK09169 hypothetical protein; 54.5 4.8E+02 0.01 31.8 24.4 16 330-345 583-598 (2316)
456 KOG1310 WD40 repeat protein [G 54.2 73 0.0016 31.5 7.9 84 215-314 386-472 (758)
457 PF10938 YfdX: YfdX protein; 53.8 86 0.0019 25.5 7.4 110 249-358 6-146 (155)
458 PF09311 Rab5-bind: Rabaptin-l 53.3 47 0.001 27.9 6.0 47 451-497 134-180 (181)
459 COG2912 Uncharacterized conser 53.3 1.4E+02 0.0029 26.9 8.9 65 415-487 181-245 (269)
460 PF10938 YfdX: YfdX protein; 53.2 35 0.00075 27.8 5.1 108 167-274 7-146 (155)
461 cd02678 MIT_VPS4 MIT: domain c 52.0 76 0.0017 21.9 7.3 28 335-362 12-39 (75)
462 PF14863 Alkyl_sulf_dimr: Alky 51.4 66 0.0014 25.6 6.2 48 119-176 71-118 (141)
463 KOG2758 Translation initiation 50.5 2.1E+02 0.0045 26.4 15.5 191 284-486 126-317 (432)
464 COG3914 Spy Predicted O-linked 49.9 2.9E+02 0.0064 28.0 11.8 108 408-530 61-172 (620)
465 PF09311 Rab5-bind: Rabaptin-l 49.0 58 0.0013 27.4 5.9 47 409-455 134-180 (181)
466 TIGR02710 CRISPR-associated pr 48.2 2.6E+02 0.0056 26.9 13.0 110 463-576 136-280 (380)
467 KOG1920 IkappaB kinase complex 47.9 4.4E+02 0.0096 29.5 25.4 24 461-484 1003-1026(1265)
468 PRK13184 pknD serine/threonine 47.7 4.3E+02 0.0092 29.2 30.6 114 168-292 481-594 (932)
469 KOG3807 Predicted membrane pro 46.7 2.4E+02 0.0052 26.1 18.4 53 256-318 195-247 (556)
470 PF14689 SPOB_a: Sensor_kinase 46.6 83 0.0018 20.7 5.5 40 109-148 14-53 (62)
471 COG2912 Uncharacterized conser 45.9 1.9E+02 0.0041 26.0 8.7 67 243-317 179-245 (269)
472 cd02656 MIT MIT: domain contai 44.9 1E+02 0.0022 21.2 7.6 28 335-362 12-39 (75)
473 KOG2063 Vacuolar assembly/sort 43.8 4.7E+02 0.01 28.6 14.0 182 332-528 507-712 (877)
474 KOG0276 Vesicle coat complex C 42.5 98 0.0021 31.2 6.9 119 417-568 616-747 (794)
475 PRK13184 pknD serine/threonine 40.2 5.5E+02 0.012 28.4 37.3 99 127-233 484-582 (932)
476 cd02680 MIT_calpain7_2 MIT: do 39.3 98 0.0021 21.4 4.7 23 425-447 16-38 (75)
477 PF02184 HAT: HAT (Half-A-TPR) 37.4 14 0.00031 20.4 0.4 25 557-581 2-26 (32)
478 PRK11619 lytic murein transgly 36.9 5.3E+02 0.011 27.2 33.0 25 119-143 34-58 (644)
479 KOG0292 Vesicle coat complex C 36.5 4.9E+02 0.011 28.1 10.9 113 117-233 990-1114(1202)
480 COG4455 ImpE Protein of avirul 33.9 3.2E+02 0.007 23.8 8.1 55 424-486 10-64 (273)
481 cd02684 MIT_2 MIT: domain cont 33.3 1.6E+02 0.0036 20.3 7.5 26 337-362 14-39 (75)
482 KOG4279 Serine/threonine prote 32.9 3.4E+02 0.0074 28.5 9.0 102 373-487 201-317 (1226)
483 KOG4279 Serine/threonine prote 32.1 6.4E+02 0.014 26.7 11.1 103 160-274 199-316 (1226)
484 KOG2063 Vacuolar assembly/sort 32.1 7.1E+02 0.015 27.3 14.9 185 289-485 506-712 (877)
485 COG3014 Uncharacterized protei 32.0 4.4E+02 0.0094 24.8 16.7 28 291-318 62-89 (449)
486 PF04010 DUF357: Protein of un 30.9 1.7E+02 0.0038 20.2 4.9 35 111-145 28-62 (75)
487 cd02677 MIT_SNX15 MIT: domain 30.5 1.9E+02 0.004 20.0 7.4 24 339-362 16-39 (75)
488 smart00671 SEL1 Sel1-like repe 30.4 99 0.0021 16.9 3.7 27 247-273 3-33 (36)
489 KOG0739 AAA+-type ATPase [Post 29.0 4.1E+02 0.009 24.5 8.0 35 116-150 8-42 (439)
490 PF04097 Nic96: Nup93/Nic96; 28.8 7E+02 0.015 26.2 29.5 21 121-141 114-134 (613)
491 smart00386 HAT HAT (Half-A-TPR 28.5 98 0.0021 16.2 3.6 16 132-147 1-16 (33)
492 COG5107 RNA14 Pre-mRNA 3'-end 27.6 6E+02 0.013 25.0 22.3 298 178-530 225-532 (660)
493 KOG1920 IkappaB kinase complex 27.2 9.5E+02 0.021 27.2 30.0 63 335-400 958-1026(1265)
494 TIGR02710 CRISPR-associated pr 26.2 6E+02 0.013 24.5 14.4 58 168-227 136-195 (380)
495 KOG4422 Uncharacterized conser 25.9 6.4E+02 0.014 24.7 33.3 68 287-357 273-341 (625)
496 KOG2709 Uncharacterized conser 25.7 1.8E+02 0.0039 27.8 5.5 31 501-532 24-54 (560)
497 PF04097 Nic96: Nup93/Nic96; 25.7 7.9E+02 0.017 25.8 22.9 18 211-228 266-283 (613)
498 PF03745 DUF309: Domain of unk 25.2 1.9E+02 0.0041 19.1 4.2 55 169-226 6-62 (62)
499 PF12753 Nro1: Nuclear pore co 24.9 2.3E+02 0.0049 27.2 6.1 53 434-489 330-387 (404)
500 PF11846 DUF3366: Domain of un 24.2 4.3E+02 0.0092 22.4 7.5 31 457-487 144-174 (193)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-42 Score=313.20 Aligned_cols=377 Identities=18% Similarity=0.206 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
.+.+-..+..+-..|++++|+.+|+.++++ .|+..+++.++|.++...|+.+.|...|..++.+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqln----- 180 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN----- 180 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----
Confidence 344667899999999999999999999988 89999999999999999999999999999998875
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
|....+...+|.++...|+..+|..+|.+++.. .|..+.+|.+||.++..+|+...|+.+|++|+.+
T Consensus 181 --P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--- 247 (966)
T KOG4626|consen 181 --PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--- 247 (966)
T ss_pred --cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---
Confidence 777778899999999999999999999999985 3456889999999999999999999999999998
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
+|....+|.+||.+|...+.+++|+..|.+++.+ .|..+.++.++|.+|..+|..+-|+..|+++++
T Consensus 248 -----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 248 -----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred -----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999976 678889999999999999999999999999998
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (581)
. .|.+..+++++|.++...|+..+|+.+|.+++.+. |..+.++++||.+|..+|++++|..+
T Consensus 315 ~----------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 315 L----------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred c----------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHH
Confidence 6 33446678999999999999999999999999884 55667899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChH
Q 008016 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT 517 (581)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (581)
|+++++. .|..+.+..+||.+|.++|++++|+..|++++.+. |..++++.++|..|..+|+..
T Consensus 377 y~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~- 439 (966)
T KOG4626|consen 377 YLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVS- 439 (966)
T ss_pred HHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHH-
Confidence 9999996 57888899999999999999999999999999865 888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 518 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 518 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
.|+..|.+|+.+ .|..+++..+||.+|...|+..+|+..|++++++.+++.+.
T Consensus 440 ~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 440 AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 999999999985 58899999999999999999999999999999999887654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-38 Score=289.15 Aligned_cols=377 Identities=16% Similarity=0.189 Sum_probs=342.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
+.++.++..+.++...|+.+.|...|.+++++ +|....+...+|..+...|+..+|...|.+++...
T Consensus 148 ~fida~inla~al~~~~~~~~a~~~~~~alql----------nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--- 214 (966)
T KOG4626|consen 148 KFIDAYINLAAALVTQGDLELAVQCFFEALQL----------NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--- 214 (966)
T ss_pred hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc----------CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC---
Confidence 34556889999999999999999999999988 88899999999999999999999999999987764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
|..+.+|.++|.++..+|+...|+..|++++.+ +|....+|.+||.+|...+.++.|+..|.+|+..
T Consensus 215 ----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 215 ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred ----CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 677788999999999999999999999999986 4667899999999999999999999999999987
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.|..+.++.++|.+|..+|..+-|+..|+++++. .|....++++||..+-..|+..+|..+|.++
T Consensus 282 -------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 282 -------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred -------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 6778999999999999999999999999999986 6778899999999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (581)
+.+. +.+ +.+.++||.+|.++|.+++|..+|.+++++ .|..+.+.++||.+|.++|++++|+
T Consensus 347 L~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 347 LRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHH
Confidence 9973 333 556799999999999999999999999987 4778899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 515 (581)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 515 (581)
.+|++++.+ .|..+.++.++|.+|..+|+.+.|+..|.+++.+. |..+++..+||.+|...|+.
T Consensus 409 ~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 409 MCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCc
Confidence 999999996 68899999999999999999999999999999854 88999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 516 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 516 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
. +|+..|+.++++ .|+..+++.+++.++.-..+|.+=-+.+++..++-.+..
T Consensus 473 ~-~AI~sY~~aLkl--------kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 473 P-EAIQSYRTALKL--------KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred H-HHHHHHHHHHcc--------CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 9 999999999985 355667888999888888888887777777777765544
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=8.1e-33 Score=259.49 Aligned_cols=331 Identities=22% Similarity=0.284 Sum_probs=305.5
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 008016 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (581)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (581)
+.+.....+.....+..+..+..+|....+...++..|..+|++++|+..+++++++..+..|.+++........+|.+|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y 251 (508)
T KOG1840|consen 172 EEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY 251 (508)
T ss_pred cccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH
Confidence 33355566666666666667788888889999999999999999999999999999999988989999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 008016 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377 (581)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 377 (581)
..++++.+|+.+|++|+.+.+..+|+++|.++.++.+||.+|...|++++|..++++++++.++. .+..++.+...+.
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQLS 329 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999984 6778888899999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (581)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (581)
+++.++..++++++|..++++++++....++.+++.++..+.+||.+|..+|++++|.+++++++.+.++..+..++.+.
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 537 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~ 537 (581)
..+..||..|.+.+++.+|...|.++..+. ..+|+++|++...+.+|+.+|..+|+++ +|+++.++++...+...+..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999 8999999999999999999999999999 99999999999999888887
Q ss_pred CHHHHHHHHHHHHHH
Q 008016 538 SEEVMLTLKKVVSYL 552 (581)
Q Consensus 538 ~~~~~~~~~~la~~~ 552 (581)
++.....-..++...
T Consensus 488 ~~~~~~~~~~~~~~~ 502 (508)
T KOG1840|consen 488 SPTVEDEKLRLADLS 502 (508)
T ss_pred CcchhHHHHhhhHHH
Confidence 777665554444443
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=100.00 E-value=3.7e-32 Score=255.09 Aligned_cols=319 Identities=28% Similarity=0.374 Sum_probs=296.5
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 008016 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 265 (581)
..........+...|....+...++..|..+|+|++|+..+++++++..+..+.+++........+|.+|...+++.+|+
T Consensus 182 ~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv 261 (508)
T KOG1840|consen 182 KGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV 261 (508)
T ss_pred HHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33333344567788988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
.+|++|+.+.+..+|.++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++
T Consensus 262 ~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 262 NLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (581)
++|..++++++++..+. .+++++.+..++.+||.+|..+|++++|++++++++.+.++..+..++.....++++|..|
T Consensus 342 Eea~~l~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred hHHHHHHHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 99999999999999864 7888889999999999999999999999999999999999998888999999999999999
Q ss_pred HHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 008016 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 505 (581)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (581)
.+.+++.+|..+|.++..+. +..|+++|++...+.+|+.+|..+|++++|+++...++...+...|..++.....-..+
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL 498 (508)
T ss_pred HHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence 99999999999999999999 88999999999999999999999999999999999999999998888887665444443
Q ss_pred HH
Q 008016 506 VS 507 (581)
Q Consensus 506 a~ 507 (581)
+.
T Consensus 499 ~~ 500 (508)
T KOG1840|consen 499 AD 500 (508)
T ss_pred hH
Confidence 33
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-30 Score=265.19 Aligned_cols=393 Identities=16% Similarity=0.127 Sum_probs=306.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...+...|..+++.|+|++|+..|+++++. .|+ +..+.++|.+|..+|++++|+..+++++.+.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----- 190 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD----- 190 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence 445889999999999999999999999976 343 5678999999999999999999999988764
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----------H------------HHcCCCC---H---------
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------E------------SRYGKTS---I--------- 242 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~------------~~~~~~~---~--------- 242 (581)
|....++..+|.+|...|++++|+..+..+.... . ......+ +
T Consensus 191 --p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 191 --PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 5666789999999999999999998776553210 0 0000000 0
Q ss_pred --------------------HHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016 243 --------------------LLVTSLLGMAKVL---GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (581)
Q Consensus 243 --------------------~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (581)
.....+..++..+ ...+++++|+..|+++++.. ...|....++..+|.++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~ 343 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCL 343 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHH
Confidence 0001111222111 12357888888888888752 2356778899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 008016 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379 (581)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 379 (581)
+|++++|+..+++++++ +|....++..+|.++...|++++|+..++++++. .|+. ..++..+
T Consensus 344 ~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~p~~---~~~~~~l 405 (615)
T TIGR00990 344 KGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-------NSED---PDIYYHR 405 (615)
T ss_pred cCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHH
Confidence 99999999999999976 4666788999999999999999999999999886 3333 3467889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 459 (581)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 459 (581)
|.++...|++++|+..|++++.+ .|.....+..+|.++...|++++|+..+++++.. .|....+
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~ 469 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDV 469 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHH
Confidence 99999999999999999999886 3455567889999999999999999999999874 4666678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539 (581)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~ 539 (581)
+..+|.++...|++++|+..|++++.+.... .+.+......+...+..+...|+++ +|+.++++++++ .|
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~-eA~~~~~kAl~l--------~p 539 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFI-EAENLCEKALII--------DP 539 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhc--------CC
Confidence 8999999999999999999999999865221 0111122222333334445578998 999999999874 24
Q ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 540 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
+...++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 45567889999999999999999999999999875444
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=6.7e-27 Score=237.51 Aligned_cols=354 Identities=16% Similarity=0.118 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV------ 192 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 192 (581)
..+..++.++...|++++|+..++++++. .|....++..+|.+|..+|++++|+..+..+....
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~ 230 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ 230 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH
Confidence 34778899999999999999999999987 78889999999999999999999988765443211
Q ss_pred ---------------------hhcCCCcch-----------------------------HHHHHHHHHHHH---HhccCH
Q 008016 193 ---------------------DSLKDDEPL-----------------------------LDAILLHMGSMY---STLENY 219 (581)
Q Consensus 193 ---------------------~~~~~~~~~-----------------------------~~~~~~~l~~~~---~~~g~~ 219 (581)
...+...+. ....+..++..+ ...+++
T Consensus 231 ~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y 310 (615)
T TIGR00990 231 SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESY 310 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhH
Confidence 000000000 000111122111 123578
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016 220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (581)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (581)
++|+..|++++... ...+....++..+|.++...|++++|+..+++++++ .|....++..+|.++..
T Consensus 311 ~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 311 EEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHH
Confidence 88888888887642 234677888999999999999999999999999987 56677889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 008016 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379 (581)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l 379 (581)
.|++++|+..|+++++. +|....++..+|.++...|++++|+..|++++++ .|+. ...+.++
T Consensus 378 ~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-------~P~~---~~~~~~l 439 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-------DPDF---IFSHIQL 439 (615)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CccC---HHHHHHH
Confidence 99999999999999876 3455678999999999999999999999999986 3333 3456889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 459 (581)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 459 (581)
|.++...|++++|+..+++++... |....++..+|.++...|++++|+..|++++.+.... .+........
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l 510 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPL 510 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHH
Confidence 999999999999999999998752 4455678899999999999999999999999863221 0111112222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008016 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 531 (581)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~ 531 (581)
+...+..+...|++++|..++++++.+. |+...++..+|.++...|+++ +|+.+|++++++.+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--------p~~~~a~~~la~~~~~~g~~~-eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--------PECDIAVATMAQLLLQQGDVD-EALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHhc
Confidence 2223334445799999999999998752 344467889999999999999 99999999998754
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=5.7e-27 Score=253.31 Aligned_cols=386 Identities=14% Similarity=0.089 Sum_probs=292.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch--
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL-- 201 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 201 (581)
.+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..|+++++...........
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 467788999999999999999987 77778999999999999999999999999988765221100000
Q ss_pred -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
.......+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..|++++++..
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 11123456888999999999999999999862 22356788999999999999999999999997621
Q ss_pred HhcCCCChhh---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 277 LNRGTESADL---------------------------------------VLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 277 ~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+++.. ...+..+|.++...|++++|+..|+++++.
T Consensus 417 -----~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~- 490 (1157)
T PRK11447 417 -----GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL- 490 (1157)
T ss_pred -----CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 11110 112334677778889999999999999876
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
.|....++..+|.+|...|++++|+..++++++. .|+++. .+..++..+...|++++|+..++
T Consensus 491 -------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-------~P~~~~---~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 491 -------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-------KPNDPE---QVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455667889999999999999999999998875 233322 23455666666677777766655
Q ss_pred HHHHH---------------------H------------HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 398 ECLLI---------------------T------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 398 ~al~~---------------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
++... . ...+ ..+|.....+..+|.++...|++++|+..|+++++.
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l-~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL-RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH-HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 42100 0 0000 012334456788999999999999999999999984
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 008016 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 524 (581)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~ 524 (581)
.|....++..++.++...|++++|++.++++++. .|+...++..+|.++...|+++ +|+.+++
T Consensus 633 --------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~-eA~~~~~ 695 (1157)
T PRK11447 633 --------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTA-AAQRTFN 695 (1157)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 5666788999999999999999999999987653 2334466788999999999999 9999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
+++...... +.......++..+|.++...|++++|+..|++++.
T Consensus 696 ~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998753211 11123456677889999999999999999999974
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1e-26 Score=251.96 Aligned_cols=374 Identities=18% Similarity=0.136 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..+...+..+...|++++|+..|+++++. .|....++..++.++...|++++|...++++....
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 563 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN------ 563 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 34667777788888888888888888765 55566677777777777788888877777765542
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
|.....+..++..+...|++++|+..+++++... |....++..+|.++...|++++|+..++++++.
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 630 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---- 630 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 2223345566667777777777777776665421 112345666677777777777777777666654
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|.....+..+|.++...|++++|...++++++. .|....++..++.++...|++++|..+++.+...
T Consensus 631 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 631 ----QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2333455666666666666666666666666553 2222334444455555555555555544444332
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-------------------------cCCCChH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-------------------------KGKEHPS 413 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~~~ 413 (581)
.+.. ...+..+|.++...|++++|+..|++++...... .-...|.
T Consensus 699 -------~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 699 -------HPKA---ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred -------CcCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 1111 1122334444444444444444444444331000 0000122
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
...++..+|.++...|++++|+..|+++++. .|....++..++.++...|+ .+|+.++++++... +
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~ 834 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P 834 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence 2334445555555555555555555555442 23333444555555555555 44555555554432 2
Q ss_pred CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016 494 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 569 (581)
Q Consensus 494 ~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 569 (581)
+++ ..+..+|.++...|+++ +|+.+++++++.. |....++..++.++.+.|++++|++++++++
T Consensus 835 ~~~---~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 835 NIP---AILDTLGWLLVEKGEAD-RALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCc---HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222 33444555555555555 5555555555421 1223445555555555555555555555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.2e-26 Score=249.41 Aligned_cols=379 Identities=17% Similarity=0.140 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...+...+..+...|++++|+..|+++++. .|....++..++.++...|++++|...++++....
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 529 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID----- 529 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 345778899999999999999999999876 66777889999999999999999999999987653
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
|....++..++.++...|++++|+.++++++... |.....+..++..+...|++++|+..++++++.
T Consensus 530 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 596 (899)
T TIGR02917 530 --PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA--- 596 (899)
T ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence 3445678889999999999999999999998752 233566788999999999999999999998765
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
.|.....+..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|...++++++
T Consensus 597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999875 344456788999999999999999999999987
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (581)
. .|+. ...+..++.++...|++++|+.+++.+.... |.....+..+|.++...|++++|+..
T Consensus 664 ~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 664 L-------KPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred c-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 5 2333 3456789999999999999999998876542 22334555667777777777777777
Q ss_pred HHHHHHHH--------------------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016 438 LRICLDIM--------------------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (581)
Q Consensus 438 ~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (581)
|++++... .+.. ...|....++..+|.++...|++++|...|+++++..
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 800 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---- 800 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence 76665421 0000 0123444566666777777777777777777766532
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 492 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
|....++..++.++...|+ . +|+.++++++++. |+....+..+|.++...|++++|..+|++++++
T Consensus 801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2333566677777777777 5 6777777776632 233445677888999999999999999999987
Q ss_pred HHH
Q 008016 572 RMK 574 (581)
Q Consensus 572 ~~~ 574 (581)
.+.
T Consensus 867 ~~~ 869 (899)
T TIGR02917 867 APE 869 (899)
T ss_pred CCC
Confidence 654
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=9.7e-26 Score=227.80 Aligned_cols=368 Identities=11% Similarity=0.066 Sum_probs=294.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..++..+......|++++|..+++..+.. .|....++..+|.+....|++++|+..++++....
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------ 106 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------ 106 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------
Confidence 34777888999999999999999999887 88889999999999999999999999999988765
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
|....++..+|.++...|++++|+..+++++.+. |....++..++.++...|++++|+..+++++..
T Consensus 107 -P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---- 173 (656)
T PRK15174 107 -VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE---- 173 (656)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----
Confidence 4445678999999999999999999999999862 334667888999999999999999999987765
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|.....+..++ .+...|++++|+..+++++... .+........++.++...|++++|+..+++++..
T Consensus 174 ----~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 174 ----VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred ----CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 223333444443 4788999999999999887641 1122233456788899999999999999999975
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (581)
.|+. ...+.++|.++...|++++ |+..+++++.. .|....++..+|.++...|++++|
T Consensus 242 -------~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 242 -------GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred -------CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3333 4566889999999999986 78999998876 355667899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC
Q 008016 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 514 (581)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 514 (581)
+..+++++.. +|....++..+|.++...|++++|+..|++++... |........++.++...|+
T Consensus 304 ~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 304 IPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCC
Confidence 9999999984 45666778899999999999999999999988742 3333456667899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHH
Q 008016 515 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 565 (581)
Q Consensus 515 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 565 (581)
.+ +|+..|+++++...+.. .+....+...+...+...+...+...+.
T Consensus 368 ~d-eA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 368 TS-EAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred HH-HHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 99 99999999998755432 2333456666666666666665443333
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.9e-25 Score=241.46 Aligned_cols=398 Identities=13% Similarity=0.076 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHH----------HHH-----------------HhcCCCChhHHH---------
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAV----------KEQ-----------------INAGNKGIEEVA--------- 163 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~----------~~~-----------------~~~~~~~~~~~~--------- 163 (581)
.....+..+...|++++|+..+++++... ... ....+..+....
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~ 262 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ 262 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 35677888899999999999999875321 000 000011111110
Q ss_pred --------HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016 164 --------ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 235 (581)
Q Consensus 164 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (581)
....+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+|+++++....
T Consensus 263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 11234788899999999999999988764 444567899999999999999999999999986422
Q ss_pred HcCCCCH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 008016 236 RYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 309 (581)
Q Consensus 236 ~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 309 (581)
....... ........+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+..
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1000000 01123345688999999999999999999997 455567889999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchH---------------------------------------HHHHHHHHHHHHHCCCHHHHHH
Q 008016 310 FSRILKIYTKVYGENDGRV---------------------------------------GMAMCSLAHAKCANGNAEEAVE 350 (581)
Q Consensus 310 ~~~al~~~~~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~g~~~~A~~ 350 (581)
|+++++.. +++... ...+..+|.++...|++++|+.
T Consensus 408 y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 408 YQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99998752 111110 1123456777888999999999
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (581)
.|+++++. .|+.+ .++..+|.+|...|++++|+..+++++... |.....+..++..+...|+
T Consensus 483 ~~~~Al~~-------~P~~~---~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--------P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 483 LQRQRLAL-------DPGSV---WLTYRLAQDLRQAGQRSQADALMRRLAQQK--------PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhCCC
Confidence 99999986 34443 356889999999999999999999988642 2223344455555666666
Q ss_pred HHHHHHHHHHHHHH---------------------H------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016 431 FVEAERLLRICLDI---------------------M------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (581)
Q Consensus 431 ~~~A~~~~~~al~~---------------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (581)
+++|+..++++... . ...+. .+|.....+..+|.++...|++++|+
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 66666655432100 0 00000 13444557788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557 (581)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 557 (581)
..|+++++.. |....++..++.++...|+++ +|+..++++++. .|+...++..+|.++...|+
T Consensus 624 ~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~-eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 624 AAYQRVLTRE--------PGNADARLGLIEVDIAQGDLA-AARAQLAKLPAT--------ANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCC
Confidence 9999998853 444578999999999999999 999999987753 34445677889999999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 008016 558 KEEKFPLKKRLSNLRM 573 (581)
Q Consensus 558 ~~~A~~~~~~a~~l~~ 573 (581)
+++|.++|++++...+
T Consensus 687 ~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 687 TAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHHhhhCc
Confidence 9999999999988653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=6.5e-26 Score=229.05 Aligned_cols=366 Identities=12% Similarity=0.023 Sum_probs=287.8
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
.+..+++.-.-++.+.-+..+. ..+...-+...+......|++++|...++..+... |....++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~ 81 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRD-------SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRR 81 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhh-------hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHH
Confidence 3444444444444444433222 22333445566777889999999999999877654 445567888
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
+|.+....|++++|+..+++++... |....++..+|.++...|++++|+..+++++.+ .|....
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~ 145 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQ 145 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHH
Confidence 9999999999999999999998862 333667899999999999999999999999987 566678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
++..++.++...|++++|...+++++... +++ ...+..++ .+...|++++|+..+++++... ..+
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~---~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~------~~~ 210 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEV-----PPR---GDMIATCL-SFLNKSRLPEDHDLARALLPFF------ALE 210 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCC---HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC------CCc
Confidence 89999999999999999999999876641 222 23344443 4788999999999999887641 111
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHH
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE----AERLLRICLDI 444 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~ 444 (581)
.. .....++.++...|++++|+..+++++.. +|....++..+|.++...|++++ |+..+++++++
T Consensus 211 ~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 211 RQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred ch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 11 12245688899999999999999999875 24456788899999999999986 89999999884
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 008016 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK 524 (581)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~ 524 (581)
.|....++..+|.++...|++++|+..+++++... |+ ...++..++.++...|+++ +|+..|+
T Consensus 280 --------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~~~G~~~-eA~~~l~ 342 (656)
T PRK15174 280 --------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALRQVGQYT-AASDEFV 342 (656)
T ss_pred --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHH-HHHHHHH
Confidence 56677889999999999999999999999998753 44 4467888999999999999 9999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
++++. +|+.......+|.++...|++++|+..|++++++.++.
T Consensus 343 ~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 343 QLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 88873 34444556667899999999999999999999987663
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-24 Score=208.60 Aligned_cols=403 Identities=16% Similarity=0.145 Sum_probs=295.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE-EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
....++..|+.+...|+|++|..+|.++++. .++ ..-.+..+|..|...|+++.++..|+++....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--- 372 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--- 372 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---
Confidence 3445777888888888888888888887764 222 25566778888888888888888888776654
Q ss_pred CCCcchHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (581)
|....++..+|.+|...+ ..+.|..+..+++.. .+....+|..++.++.... ...++..|..|
T Consensus 373 ----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d-~~~sL~~~~~A 439 (1018)
T KOG2002|consen 373 ----PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTD-PWASLDAYGNA 439 (1018)
T ss_pred ----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 455556667777777665 445555555555543 2455788999999887554 44559999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHCCCHHHHH
Q 008016 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAV 349 (581)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 349 (581)
+.+....... .-+..++++|..++..|++.+|...|.+++..+......+. .......+++|.++...++++.|.
T Consensus 440 ~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 440 LDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 9888775433 34678999999999999999999999999998554322222 123456789999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh------cC---------------
Q 008016 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY------KG--------------- 408 (581)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~--------------- 408 (581)
+.|...+.. +|.+..++..+|.+....+...+|..++..++..-... +|
T Consensus 517 e~Yk~Ilke----------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 517 EMYKSILKE----------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred HHHHHHHHH----------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 999998875 55567777888877777888888888888877542111 11
Q ss_pred -------CCChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016 409 -------KEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (581)
Q Consensus 409 -------~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (581)
........++..||+++.+. .+.+.+...+.+|++++.+.+. .+|....+-+.+|.++...|++.+|
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHH
Confidence 00001223455667766542 2335556666666666555543 3577777889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 008016 477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 556 (581)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 556 (581)
...|.++.+... +...++.++|.+|..+|++. .|+++|+.++..+-. .+...++..||.++...|
T Consensus 666 ~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~-~AIqmYe~~lkkf~~------~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 666 RDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYR-LAIQMYENCLKKFYK------KNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred HHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHH-HHHHHHHHHHHHhcc------cCCHHHHHHHHHHHHHhh
Confidence 999999987653 22356899999999999999 999999999986532 234577889999999999
Q ss_pred ChhhhHHHHHHHHHHHHH
Q 008016 557 RKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 557 ~~~~A~~~~~~a~~l~~~ 574 (581)
++.+|.+....++.+.+.
T Consensus 731 ~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPS 748 (1018)
T ss_pred hHHHHHHHHHHHHHhCCc
Confidence 999999999998877654
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-23 Score=187.97 Aligned_cols=403 Identities=13% Similarity=0.113 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+-..|..+++.|+|++||.+|.++++. .|+.+..+.+++-||...|++++.++...+++++.
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--- 179 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--- 179 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence 44556888999999999999999999999987 66668899999999999999999999999988765
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHH------------------HHHHH-----HHHHcCC-CC---H--HHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQ------------------RVINV-----LESRYGK-TS---I--LLVT 246 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~---~--~~~~ 246 (581)
|....+++..+..+...|++++|+.-.. +.++. ....+.. .. | ....
T Consensus 180 ----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~ 255 (606)
T KOG0547|consen 180 ----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA 255 (606)
T ss_pred ----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 8888999999999999999998865332 22211 1111111 11 1 1111
Q ss_pred HHHH--------------------HHHHH--Hhc---CCHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHH
Q 008016 247 SLLG--------------------MAKVL--GSI---GRAKKAVEIYHRVITILELNRGTE-----SADLVLPLFSLGSL 296 (581)
Q Consensus 247 ~~~~--------------------la~~~--~~~---g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~ 296 (581)
+++. +...+ ... ..|.+|...+.+...........+ -...+.++...|..
T Consensus 256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 1110 11111 111 245555555555444433222111 12346778888999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (581)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (581)
+.-.|++..|...|+.++++ ++.....|..+|.+|....+.++-...|.++.++ +|.+ ..+|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-------dp~n---~dvY 397 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-------DPEN---PDVY 397 (606)
T ss_pred hhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------CCCC---Cchh
Confidence 99999999999999999986 3344444888999999999999999999999987 3333 3456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (581)
+..|.++.-.+++++|+.-|++++.+ .|..+..+..++.+..++++++++...|+.+... -|..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~ 461 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNC 461 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCC
Confidence 88999999999999999999999987 4777889999999999999999999999999874 4666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT-RLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
..++.-.|.++..++++++|.+.|..++++.....+ -+.. +..+..-|.+.. -.++.. +|++++++|+++
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v~-~~plV~Ka~l~~qwk~d~~-~a~~Ll~KA~e~------ 532 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIVN-AAPLVHKALLVLQWKEDIN-QAENLLRKAIEL------ 532 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-cccc-chhhhhhhHhhhchhhhHH-HHHHHHHHHHcc------
Confidence 778888999999999999999999999987632110 0000 111222222221 236677 999999999884
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhhc
Q 008016 536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 580 (581)
Q Consensus 536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 580 (581)
+|..-.++..||.+...+|+.++|+++|+++..+.+...++++
T Consensus 533 --Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 533 --DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred --CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5777889999999999999999999999999999988887764
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=2.1e-23 Score=215.70 Aligned_cols=390 Identities=11% Similarity=-0.009 Sum_probs=250.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (581)
.+........|+.++|+..+.++... .+..+.++..+|.++...|++++|+..+++++... |.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~ 81 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQ 81 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence 33444445566666666665555432 34445556666666666666666666666655542 22
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
...++..++.++...|++++|+..+++++... ++ ... +..+|.++...|++++|+..++++++.
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~------- 145 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----PD---KAN-LLALAYVYKRAGRHWDELRAMTQALPR------- 145 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 22334556666666666666666666665531 11 223 555566666666666666666666655
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------------------HHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFS----------------------------------------------RILK 315 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------------------~al~ 315 (581)
.|....++..++.++...|..++|+..++ .+++
T Consensus 146 -~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 146 -APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred -CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 33344444555555555555555443333 3332
Q ss_pred HHHHHcCCCCchHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016 316 IYTKVYGENDGRVGMAMCS-LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (581)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (581)
..... +...+....+... ++ .+...|++++|+..|+++++. ++..+.... ..+|.+|...|++++|+.
T Consensus 225 ~~~~~-p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 225 LWHDN-PDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQS 293 (765)
T ss_pred hcccC-CccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHH
Confidence 21100 0111223333333 34 346779999999999997764 222222222 336889999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh---c--CCCCcc--hHHHHHHHHHH
Q 008016 395 LLEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGIT 466 (581)
Q Consensus 395 ~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~~--~~~~~~~la~~ 466 (581)
+|++++... +.. .........++.++...|++++|+.+++++....... . ....|+ ...++..++.+
T Consensus 294 ~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 294 ILTELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 999987531 111 1112455667778899999999999999988741100 0 001122 34567789999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008016 467 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 546 (581)
Q Consensus 467 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 546 (581)
+...|++++|++.+++++... |++ ...+..+|.++...|+++ +|+..+++++++ .|+....+.
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-----P~n---~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~ 431 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-----PGN---QGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEV 431 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHH
Confidence 999999999999999998753 444 478999999999999999 999999999984 366667888
Q ss_pred HHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 547 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 547 ~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
.+|.++...|++++|...++++++..++....
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999987765544
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.4e-23 Score=199.82 Aligned_cols=403 Identities=17% Similarity=0.187 Sum_probs=298.7
Q ss_pred HHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016 118 LLELFNEVKSMIMM---GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (581)
Q Consensus 118 ~~~l~~~~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (581)
+..++.++..-... ..+..++.++..+... ++.++.++..|+.-|+..|+|..+..+...+....
T Consensus 233 v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-- 300 (1018)
T KOG2002|consen 233 VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-- 300 (1018)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--
Confidence 34455555443333 3456666666666554 77778899999999999999999999998877764
Q ss_pred cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
...+..+..++.+|.+|..+|+|++|..+|.+++... ++ .....+..+|.+|...|+++.|...|++++..
T Consensus 301 --~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 301 --ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred --hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 4456777889999999999999999999999998752 12 24667889999999999999999999999987
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016 275 LELNRGTESADLVLPLFSLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (581)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (581)
.|....+...||.+|...+ ..+.|..+..++++. .|....+|..++.++... +...++.
T Consensus 372 --------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~ 434 (1018)
T KOG2002|consen 372 --------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLD 434 (1018)
T ss_pred --------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHH
Confidence 5667788888999998876 456666677766654 366778999999988765 5555599
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHc
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRS 428 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~ 428 (581)
+|..|+.++... ..+ .-..+++++|..++..|++.+|...+..|+.........+. .......+++|.++...
T Consensus 435 ~~~~A~d~L~~~--~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 435 AYGNALDILESK--GKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHc--CCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 999999888764 222 22456799999999999999999999999988553322222 12345688999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------HcC----------
Q 008016 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI------AFG---------- 492 (581)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~---------- 492 (581)
++++.|.+.|...+. .+|..+.++..+|.+....++..+|..++..++..... .+|
T Consensus 510 ~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 999999999999988 48999999999998888889999999999888765321 111
Q ss_pred C------------CChhHHHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016 493 K------------DSLPVGEALDCLVSIQTRL-----GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 555 (581)
Q Consensus 493 ~------------~~~~~~~~~~~la~~~~~~-----g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 555 (581)
+ +....+.++..||+++... .+.+ ++...+.+|++++.+++. .+|.++.+-+.+|.++...
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e-k~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE-KEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH-HHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhc
Confidence 0 0001224456677766543 2234 677778888888777654 3455556666666666666
Q ss_pred CChhhhHHHHHHHHHHHH
Q 008016 556 GRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 556 g~~~~A~~~~~~a~~l~~ 573 (581)
|++.+|+.+|.++.+-..
T Consensus 660 g~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS 677 (1018)
T ss_pred cCchHHHHHHHHHHHHHh
Confidence 666666666666655443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.4e-21 Score=187.59 Aligned_cols=312 Identities=16% Similarity=0.111 Sum_probs=244.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
..+...+..+..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..++.+....
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 99 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--- 99 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence 34444666788888999999999999999976 67778899999999999999999999999876531
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
.........++..+|.+|...|++++|+..|+++++. .+....++..++.++...|++++|+..++++++..
T Consensus 100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 1112233457889999999999999999999998863 23346778899999999999999999999987752
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.. .........+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..++++
T Consensus 172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 111223456778999999999999999999999875 2345567888999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (581)
+.. .+ ......+..++.+|...|++++|+..+++++... ++ . ..+..++.++...|++++|+
T Consensus 241 ~~~-------~p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~---~-~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 241 EEQ-------DP--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PG---A-DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHH-------Ch--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---c-hHHHHHHHHHHHhCCHHHHH
Confidence 875 12 2223456789999999999999999999988762 22 2 23378999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q 008016 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYI 486 (581)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~ 486 (581)
..++++++. .|+.... ..+...+.. .|+..+|+..+++.++.
T Consensus 303 ~~l~~~l~~--------~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 303 ALLREQLRR--------HPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHh--------CcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 999999884 3554433 333333332 56899999999988763
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.8e-21 Score=185.46 Aligned_cols=309 Identities=17% Similarity=0.160 Sum_probs=241.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (581)
.+..|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++... ......
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~ 105 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQ 105 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHH
Confidence 456788889999999999999999985 23446788999999999999999999999887631 111223
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
...++..+|.+|...|++++|+..|+++++. ++....++..++.++...|++++|++.++++++...
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----- 172 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG----- 172 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence 3467899999999999999999999998863 345567888999999999999999999999887521
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
.+........+..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|++++++++..
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 243 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ- 243 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 11122334456789999999999999999999998762 334567888999999999999999999999874
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 525 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~ 525 (581)
+......++..++.+|...|++++|...++++++.. |+. ..+..++.++...|+++ +|+..+++
T Consensus 244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~ 307 (389)
T PRK11788 244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE 307 (389)
T ss_pred ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 112234567889999999999999999999988752 332 23478999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH--HcCChhhhHHHHHHHHHHH
Q 008016 526 VLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 526 a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~l~ 572 (581)
+++. .|+.......++..+. ..|+.++|+..++++++..
T Consensus 308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9874 2444433323332222 2568999999999988644
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.91 E-value=6.8e-20 Score=196.95 Aligned_cols=500 Identities=14% Similarity=0.052 Sum_probs=353.6
Q ss_pred hccccchhhhhhccchhhHHHHHHhhhhcccCCCcccccccccccccccCC----cchHHhhhhhhhhhhhhccccchHH
Q 008016 40 CLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSA----PNDFARSKTLHDHSSNLWDGMNDFE 115 (581)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~ 115 (581)
.+...++..+.|+..++++.+++...|.++.+..+...+...+...+.|.. ...|+++|.++..+....-...+..
T Consensus 259 v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~ 338 (903)
T PRK04841 259 VLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ 338 (903)
T ss_pred HHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch
Confidence 467888999999999999999999999998888887777777776666543 2359999999877653322222222
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.........+..+...|++.+|+..+..+ .+.+.....+...+......|++..+..++..+....
T Consensus 339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a-----------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~--- 404 (903)
T PRK04841 339 ELPELHRAAAEAWLAQGFPSEAIHHALAA-----------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV--- 404 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHC-----------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---
Confidence 22222344456678899999988766543 2233445566667778888899888777766532111
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
...++.. ....+.++...|++++|..++.++............ .........++.++...|++++|..++++++..
T Consensus 405 ~~~~~~l---~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 405 LLENPRL---VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred HhcCcch---HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1222332 355677888999999999999988765432210111 224455666888999999999999999999875
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
.. ..+......+...+|.++...|++++|...+++++...... ........++.++|.++...|++++|...+++
T Consensus 482 ~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 482 LP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEK 556 (903)
T ss_pred CC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21 11222344567889999999999999999999999987754 22233456778999999999999999999999
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHH
Q 008016 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434 (581)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 434 (581)
++...... ..+..+....++..+|.++...|++++|...+++++....... .......+..+|.++...|++++|
T Consensus 557 al~~~~~~--~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 557 AFQLIEEQ--HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHh--ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988763 1222233334456789999999999999999999999875431 233456777899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016 435 ERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 513 (581)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 513 (581)
...+.++..+.... + ..... ..........+...|+.+.|..++....... .+ ...........++.++...|
T Consensus 632 ~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 632 RRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred HHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcC
Confidence 99999998875442 1 11111 1111112244556899999988876653311 01 11112233567899999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 514 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 514 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
+++ +|...+++++...+.. + .......++..+|.++...|+.++|...+.+++++....
T Consensus 706 ~~~-~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 706 QFD-EAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred CHH-HHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 999 9999999999886553 2 234667788899999999999999999999999987543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.1e-20 Score=193.43 Aligned_cols=352 Identities=11% Similarity=-0.002 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+...+..+...|++++|+.+++++++. .|..+.++..++.++...|++++|+..+++++...
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------- 113 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA------- 113 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 3778889999999999999999999987 67777788899999999999999999999987764
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR--------- 270 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------- 270 (581)
|.... +..+|.++...|++++|+..+++++... ++ ...++..++.++...|..++|+..+++
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 44444 7889999999999999999999999863 22 345556678888777877777655552
Q ss_pred ------------------------------HHHHHHHhcC--CC----ChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 008016 271 ------------------------------VITILELNRG--TE----SADLVLPLFS-LGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 271 ------------------------------al~~~~~~~~--~~----~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a 313 (581)
+++..+.... +. .+....+... ++ .+...|++++|+..|+++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHh
Confidence 2221111110 11 1222333333 34 346779999999999998
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHH
Q 008016 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEG 392 (581)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 392 (581)
++. ++..|..+..+ +|.+|...|++++|+..|++++.. .+.. .........++.++...|++++|
T Consensus 264 l~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 264 KAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 764 12234444333 688999999999999999998763 2222 11123346677788999999999
Q ss_pred HHHHHHHHHHHHHh---cC--CCCh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016 393 RELLEECLLITEKY---KG--KEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (581)
Q Consensus 393 ~~~~~~al~~~~~~---~~--~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (581)
+.+++++....... .+ ...| ....++..++.++...|++++|+..+++++.. .|.....+..+|.
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~ 401 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYAS 401 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 99999887653110 00 1112 33457788999999999999999999999874 4666778999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016 466 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~ 529 (581)
++...|++++|++.+++++.+. |+....+..+|.++...|+++ +|...++++++.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~-~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWR-QMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHH-HHHHHHHHHHHh
Confidence 9999999999999999998854 444467888999999999999 999999999884
No 21
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-21 Score=171.46 Aligned_cols=330 Identities=17% Similarity=0.143 Sum_probs=266.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (581)
-|.-+++.|++...+.+|+.+++.- .++-..+..+|..+|..|+..++|++|+++...-+.+.+.+ .+...-+.+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKs 97 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKS 97 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccc
Confidence 3667889999999999999998874 23445567778999999999999999999988777666554 233344667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC--------------------HHHHH
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE 307 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 307 (581)
..+||..+...|.|++|+.+..+-+.+.++. .+......+++++|.+|...|+ ++.|.
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 7899999999999999999999999988775 3445567899999999998875 35566
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (581)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (581)
++|..-+++.++. ++......++.+||..|+-.|+|+.|+...+.-+.+.++- .+....-.++.++|.++.-.|
T Consensus 176 ~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 176 KFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence 6676666666554 3444567889999999999999999999999999998873 344555678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (581)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (581)
+++.|+++|+..+.+..+. .+....+...+.||..|.-..++++|+.++++-+.|.++.. +......+++.||..+
T Consensus 250 ~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWSLGNAF 325 (639)
T ss_pred ccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHH
Confidence 9999999999999998877 45556677888999999999999999999999999988762 3345567889999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
...|..++|..+.++.+++..++-. ......+..++.......|..+
T Consensus 326 ~alg~h~kAl~fae~hl~~s~ev~D--~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHLRSSLEVND--TSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCC--cchhhhhhhhhHHHHHHhCCCc
Confidence 9999999999999999998877632 2223345666777777777654
No 22
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-22 Score=172.96 Aligned_cols=330 Identities=16% Similarity=0.113 Sum_probs=265.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
-|.-+++.|++...+.+|+.|++.-. .+-.....+|..||.+|...++|++|+++..--+.+.+.+ .+....+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAK 96 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAK 96 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcccc
Confidence 46667899999999999999998632 2334567789999999999999999999987766665543 23334466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC--------------------HHHH
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AEEA 348 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A 348 (581)
+.-+||+.+-..|.|++|+.+..+-+.+.++. .+......+++++|.+|...|+ ++.|
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 77899999999999999999999999998877 4455678899999999998775 4556
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (581)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (581)
.++|..-+++.++. .+......++.+||..|+-.|+++.|+...+.-+.+.++. .+....-.++.++|.++.-.
T Consensus 175 v~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 175 VKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhh
Confidence 77777777776653 4455567788999999999999999999999999998776 34445567899999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 508 (581)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 508 (581)
|+++.|+++|+..+.+..+. .+....+...+.||..|.-..++++|+.++.+-+.+.+++ .+......+++.||..
T Consensus 249 g~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNA 324 (639)
T ss_pred cccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHH
Confidence 99999999999999988876 2344556678899999999999999999999999998876 3445566889999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016 509 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 559 (581)
Q Consensus 509 ~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 559 (581)
+...|..+ +|+.+.++.+++..++-.+. ....+..+|.+.-...|..+
T Consensus 325 ~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 325 FNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQED 372 (639)
T ss_pred HHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCc
Confidence 99999999 99999999999887763322 23345556666666666543
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=1.4e-19 Score=188.43 Aligned_cols=348 Identities=12% Similarity=0.068 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (581)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (581)
...++..+..++...|+++.|..+++.+.+.- -.|+. .+++.+...|.+.|++++|..+|+++.+. +.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~pD~-~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv- 503 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LKADC-KLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV- 503 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-
Confidence 34567778888888999999999988876531 12332 35678888899999999999999887652 11
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
.| ...++..+...|.+.|++++|..+|++..+. .-.|+ ..+++.+...|.+.|++++|.+++.++.....
T Consensus 504 ~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~-- 573 (1060)
T PLN03218 504 EA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETH-- 573 (1060)
T ss_pred CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC--
Confidence 11 2567888899999999999999999887653 11232 56788999999999999999999988765310
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
+-.|+ ..+++.+...|.+.|++++|.++|+++.+. ...++ ..+|+.+...|.+.|++++|..+|++..
T Consensus 574 --gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----gi~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 574 --PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----NIKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred --CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222 467888888999999999999999987664 12222 2356788889999999999999999876
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
.. .-.|+ ..++..+...|.+.|++++|.++++++.+. ..+....++..+...|.+.|++++|.++|
T Consensus 642 ~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 642 KK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred Hc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 53 12333 357888889999999999999999988752 22223457889999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhh
Q 008016 481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 560 (581)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 560 (581)
+++.... -.|+ ..++..|...|.+.|+.+ +|.+++++.... + -.|+ ..++..+...+.+.|+.++
T Consensus 708 ~eM~~~g------~~Pd-vvtyN~LI~gy~k~G~~e-eAlelf~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 708 EDIKSIK------LRPT-VSTMNALITALCEGNQLP-KALEVLSEMKRL-----G-LCPN-TITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHcC------CCCC-HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHH
Confidence 8875421 1233 367899999999999999 999999887542 1 1233 4567778889999999999
Q ss_pred hHHHHHHHHHH
Q 008016 561 KFPLKKRLSNL 571 (581)
Q Consensus 561 A~~~~~~a~~l 571 (581)
|.+++.++.+.
T Consensus 773 A~~l~~~M~k~ 783 (1060)
T PLN03218 773 GLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 24
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=1.8e-19 Score=187.78 Aligned_cols=378 Identities=12% Similarity=0.039 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..++.....+.+.|++++|+++|+++... ...+.....+..+...+...|..++|..+++.+..
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~--------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------- 434 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKR--------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------- 434 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--------
Confidence 34555666778899999999999987542 11233444556667778889999999988876421
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
|.. .+++.+-..+...|++++|..+++++.+.. ......++..+...|.+.|++++|.++++++.+.
T Consensus 435 -pd~-~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~---- 501 (1060)
T PLN03218 435 -PTL-STFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA---- 501 (1060)
T ss_pred -CCH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----
Confidence 333 457788888999999999999999876631 1112567888999999999999999999987754
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+......+++.+...|.+.|++++|..+|.++.+. .-.| ...+|+.+...|.+.|++++|.+++.++...
T Consensus 502 ---Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 502 ---GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred ---CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11223678899999999999999999999987653 1223 3568999999999999999999999998763
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
.. ...|+ ..++..+...|.+.|++++|.++|+++.+. +.+....+|+.+...|.+.|++++|..+|
T Consensus 572 ~~---gi~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 572 TH---PIDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred cC---CCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11 12233 235678888999999999999999987653 12223457889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~ 518 (581)
+++... .-.|+ ..++..+...|.+.|++++|.++++++.+. .......++..+...|.+.|+.+ +
T Consensus 638 ~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-e 702 (1060)
T PLN03218 638 DDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-K 702 (1060)
T ss_pred HHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-H
Confidence 998762 22344 357889999999999999999999998652 12223367899999999999999 9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 519 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
|..+|++..+. + ..|+ ..+++.+...|.+.|++++|.++|+++...
T Consensus 703 A~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 703 ALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999877542 1 1233 467999999999999999999999998754
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.6e-20 Score=192.60 Aligned_cols=344 Identities=14% Similarity=0.070 Sum_probs=264.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC---HHHHHHH---------
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN---YEKSMLV--------- 225 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~--------- 225 (581)
.|.....+..++......|++++|..+++.+.... ++... .......++.+|...+. ..++..+
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ---GDARL-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC---ccccc-CHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 46677888899999999999999999999876531 11111 12234477777776655 3333222
Q ss_pred -------------HHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016 226 -------------YQRVINVLESRYGKTSIL--LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (581)
Q Consensus 226 -------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (581)
+..+... .+ ..|. ...++.++|.++.. |++.+|+..+.+++... |.. ...
T Consensus 448 ~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~ 512 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQH 512 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHH
Confidence 2222222 11 2233 57789999999987 89999999999988762 222 235
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (581)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (581)
..+|.++...|++++|+..+++++.. .+. ...+..+|.++...|++++|..+++++++. .++..
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-------~P~~~ 576 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-------GLGDN 576 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCccH
Confidence 56777778999999999999987542 112 234678899999999999999999999875 23332
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
..+..++......|++++|+..++++++.. |. ...+.++|.++.+.|++++|+..+++++.+
T Consensus 577 ---~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------ 638 (987)
T PRK09782 577 ---ALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL------ 638 (987)
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 233455666667799999999999998762 33 568899999999999999999999999985
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
+|+...++.++|.++...|++++|+..++++++.. |....++.++|.++...|+++ +|+..+++++++
T Consensus 639 --~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l- 706 (987)
T PRK09782 639 --EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD- 706 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc-
Confidence 57777899999999999999999999999998854 444578999999999999999 999999999984
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 531 EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 531 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
.|+...+....|.+.....+++.|.+.+.+...+..
T Consensus 707 -------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 707 -------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred -------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 366677888899999999999999999988876643
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.1e-22 Score=186.14 Aligned_cols=310 Identities=15% Similarity=0.151 Sum_probs=242.5
Q ss_pred hHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 201 LLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.+...+..+|..|... -+..+|+..|++ +. ..++....++..+|..|+.+++|++|..+|+.+.+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp-------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~---- 382 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-LP-------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI---- 382 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH-------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 4445566666666543 445677777776 22 233455688999999999999999999999998776
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|......-....+++...+--+--.+.+..+ ..++....+|..+|.+|.-+++++.|++.|++|+++
T Consensus 383 ----~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li--------~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl 450 (638)
T KOG1126|consen 383 ----EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI--------DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL 450 (638)
T ss_pred ----ccccccchhHHHHHHHHHHhhHHHHHHHHHHH--------hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc
Confidence 23333333333444444433222222222222 235666788999999999999999999999999987
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
++....+|..+|.=+....++|.|..+|+.|+.+ .|....+|+.+|.+|.++++++.|+-+|
T Consensus 451 ----------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 451 ----------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred ----------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHH
Confidence 3334567778888899999999999999999876 4666789999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~ 518 (581)
++|+++ +|........+|.++.+.|+.++|+.++++|+.+. +.+| -..+..|.++...++++ +
T Consensus 513 qkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~---l~~~~~~~il~~~~~~~-e 575 (638)
T KOG1126|consen 513 QKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNP---LCKYHRASILFSLGRYV-E 575 (638)
T ss_pred HhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCc---hhHHHHHHHHHhhcchH-H
Confidence 999986 67777788999999999999999999999998754 3333 56788999999999999 9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 519 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
|+..+++..++ .|+...++..+|.+|.+.|+.+.|+..|-=|.++.++-.+
T Consensus 576 al~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999988774 4777899999999999999999999999999988877544
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3.1e-21 Score=170.87 Aligned_cols=372 Identities=16% Similarity=0.114 Sum_probs=193.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (581)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (581)
+..+++..+|.+|+.+|+-++...+.+. ......++.++|..+.+.|.|+.|+..|+...... |....
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a 311 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA 311 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence 3446667778888888888887654432 44556778888999999999999998888765543 44443
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-------------------------------------------------
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLES------------------------------------------------- 235 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------------------- 235 (581)
. +++..+++..|+-++-.+.|++.+.+--.
T Consensus 312 ~-~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 A-LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred h-hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3 44566667777777777777766554100
Q ss_pred --HcCCC-----------------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016 236 --RYGKT-----------------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (581)
Q Consensus 236 --~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (581)
+..++ .+.....-.+.+.-+.+.|+++.|++.++-.- + .++.....+-++|..+
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~----~---kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE----K---KDNKTASAAANNLCAL 463 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH----h---ccchhhHHHhhhhHHH
Confidence 00000 00111122334556677778877776653211 1 1222223333444444
Q ss_pred HHHc--CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 008016 297 FIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374 (581)
Q Consensus 297 ~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 374 (581)
++.+ .++.+|..+...++.+ +...+.++.+.|.+-+..|++++|.+.|++++.. +.....
T Consensus 464 ~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------dasc~e 525 (840)
T KOG2003|consen 464 RFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----------DASCTE 525 (840)
T ss_pred HHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----------chHHHH
Confidence 4442 2444555555544433 2233344455555555556666666666555532 222234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
+++++|..+..+|+.++|+.+|-+.-.+.. ..+.++..++.+|....+..+|++++.++..+ -|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip 589 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IP 589 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CC
Confidence 455566666666666666665555444431 22345555555565555666666555555442 12
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 534 (581)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~ 534 (581)
....++..||.+|-+.|+-.+|.+++-.....+ |...++..+|+..|....-++ +|+.+|+++.-+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali----- 655 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI----- 655 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc-----
Confidence 222344555555555555555555444433322 233334444444444444344 555555544322
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q 008016 535 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567 (581)
Q Consensus 535 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 567 (581)
.|........++.++.+.|+|.+|.++|+.
T Consensus 656 ---qp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 656 ---QPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred ---CccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 133334444445555555555555555544
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=6.9e-20 Score=189.48 Aligned_cols=359 Identities=10% Similarity=-0.018 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHH----------
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQSL---------- 184 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~---------- 184 (581)
...+...+....+.|++++|..+++++...- .+..........++..|...+. ..++..+
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-------GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-------cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 3446666777899999999999999987630 0011122334467777766655 3333222
Q ss_pred ------------HHHHHHHHhhcCCCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016 185 ------------LDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (581)
Q Consensus 185 ------------~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (581)
+..+.... +..|. ...++..+|.++.. |++.+|+..+.+++... ++ ......
T Consensus 449 ~~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd----~~~~L~ 514 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PD----AWQHRA 514 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cc----hHHHHH
Confidence 22222222 33344 66788999999987 89999999999988753 22 123566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
+|.++...|++++|+..+++++.. .+. ...+..+|.++...|++++|..+++++++. +|....
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~ 577 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNA 577 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHH
Confidence 777788999999999999987543 111 234678899999999999999999999875 233444
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
.+..++......|++++|+..++++++. .|+ ...+.++|.++...|++++|+..+++++..
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------- 638 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL-------- 638 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 5555666667789999999999999986 332 356789999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (581)
.|....++.++|.++...|++++|+..++++++. +|....++.++|.++...|++++|+..+++++++.
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--- 707 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--- 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 3555678999999999999999999999999985 56777899999999999999999999999998754
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016 491 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 559 (581)
Q Consensus 491 ~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 559 (581)
|+.+.+....|.+.....++. .|.+.+.++..+. +... +....|.++..++++-
T Consensus 708 -----P~~a~i~~~~g~~~~~~~~~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~ 761 (987)
T PRK09782 708 -----DNQALITPLTPEQNQQRFNFR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVG 761 (987)
T ss_pred -----CCCchhhhhhhHHHHHHHHHH-HHHHHHHHHhhcC--------ccch-hccccchHhhhccccc
Confidence 555566777788876666666 6666666655431 2222 5556666676666653
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.7e-21 Score=179.95 Aligned_cols=296 Identities=16% Similarity=0.112 Sum_probs=232.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
.+......-+..+|+..|++.-. ..+....++..+|..|+.+++|++|..+|+.+.+...-. .+..
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~----------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~m 390 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPS----------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH----------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccch
Confidence 33344555667888888888222 256666899999999999999999999999987764221 1111
Q ss_pred HHHHHHHHHHHhccCHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVY-QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
++ ...+++...+- -++.++ +..++ .++....+|..+|.+|..+++++.|++.|++|+++
T Consensus 391 ei---yST~LWHLq~~-v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-------- 450 (638)
T KOG1126|consen 391 EI---YSTTLWHLQDE-VALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-------- 450 (638)
T ss_pred hH---HHHHHHHHHhh-HHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------
Confidence 22 22223322221 122222 22222 23445678999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+|....+|..+|.-+....+++.|..+|+.|+.+ +|....+|+.+|.+|.++++++.|+-+|++|+++
T Consensus 451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---- 518 (638)
T KOG1126|consen 451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---- 518 (638)
T ss_pred CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC----
Confidence 6778889999999999999999999999999976 5677899999999999999999999999999987
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
+|.. ..+...+|.++.+.|+.++|+.++++|+.+. |...-..+..|.++...+++++|+..+++..
T Consensus 519 ---NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 519 ---NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred ---Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3333 3345779999999999999999999998762 3334567788999999999999999999987
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
++ .|+...++..+|.+|.+.|+.+.|+..|.-|.++.
T Consensus 585 ~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 585 EL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred Hh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 75 57777899999999999999999999999887743
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.9e-19 Score=158.94 Aligned_cols=304 Identities=15% Similarity=0.120 Sum_probs=227.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
++.++....+.++++.-++..... .-+.....-...|.+...+.++++|+..|+...+. +|....
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~ 297 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcch
Confidence 444555555555555555444332 12223344556678888888889888888887654 343333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
-+....+++.-..+-.+-.-+-+.+..+ +.....+...+|+.|.-.++.++|+.+|++++++
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL---------- 359 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL---------- 359 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----------
Confidence 3334444444443322222222222222 2233455667888899999999999999999997
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
++....+|..+|.-|..+.+...|++.|++|+++. |....+|+.||..|..++...=|+-+|++|...
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---- 427 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---- 427 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----
Confidence 33346678889999999999999999999999884 556689999999999999999999999999984
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
.|.....|..||.+|.+.++.++|++.|.+++... + ....++..||.+|.+.++.. +|..+|++.++
T Consensus 428 ----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------d--te~~~l~~LakLye~l~d~~-eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 ----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------D--TEGSALVRLAKLYEELKDLN-EAAQYYEKYVE 494 (559)
T ss_pred ----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------c--cchHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 46667789999999999999999999999998743 1 13367999999999999999 99999999998
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 529 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
.. ...|...+++..+..-|+.-+.+.+++++|..+..+++.-
T Consensus 495 ~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 495 VS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 76 3445567888888888999999999999999876666544
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.2e-20 Score=164.66 Aligned_cols=368 Identities=14% Similarity=0.089 Sum_probs=268.7
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (581)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (581)
..+..+-..|+-++..|+|++|+.+|..++.+. ++. ...+.+.+-+|...|++++.++...+++++
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl------- 178 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDE---PIFYSNRAACYESLGDWEKVIEDCTKALEL------- 178 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 345667888999999999999999999999886 332 345788999999999999999999999986
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHH------------------HHHHH-----HHHHhcCCC-Chhh-----HHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIY------------------HRVIT-----ILELNRGTE-SADL-----VLPL 290 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------~~al~-----~~~~~~~~~-~~~~-----~~~~ 290 (581)
.|..+.+++..+.++...|++++|+.-. ++.++ -....++.+ .|.. ..++
T Consensus 179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 4677899999999999999999987543 22221 111112211 1111 1111
Q ss_pred HH--------------------HHH--HHHHc---CCHHHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHH
Q 008016 291 FS--------------------LGS--LFIKE---GKAVDAESVFSRILKIYTKVYGEN-----DGRVGMAMCSLAHAKC 340 (581)
Q Consensus 291 ~~--------------------la~--~~~~~---g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~ 340 (581)
+. +.. -+... ..|.+|...+.+...........+ -...+.++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 10 000 01111 145555555555544433322211 1224777888899999
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (581)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (581)
-.|++..|...+++++.+... . ...|..+|.+|....+.++....|.+|..+ +|....+|+.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-------~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH 399 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-------F---NSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH 399 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-------c---chHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence 999999999999999987322 2 223678999999999999999999999876 3445568999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 500 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 500 (581)
.|.++.-.+++++|+.-|++++.+ +|+.+..+..++.+.+++++++++...|+++...+ |...+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~E 463 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPE 463 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCch
Confidence 999999999999999999999985 67888899999999999999999999999998865 44557
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
++...|.++..+++++ +|++.|..++++....-+.......-+...+... .-.+++..|.+++++|+++.++..+.
T Consensus 464 vy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred HHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHH
Confidence 8899999999999999 9999999999876442111000011112222222 23489999999999999998886653
No 32
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.88 E-value=2.8e-20 Score=192.20 Aligned_cols=370 Identities=13% Similarity=0.042 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...+...+..|.+.|++++|..+|+++. ..+..+++.+...|.+.|++++|..+|+++..... .+
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~p 222 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMP-------------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS--DA 222 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCC-------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CC
Confidence 3345666778888999999998888753 12456788999999999999999999998765310 11
Q ss_pred Ccc-------------------------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016 198 DEP-------------------------------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (581)
Q Consensus 198 ~~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (581)
+.. ....+++.+...|.+.|++++|...|+++.. + ...
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----~~v 291 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------K----TTV 291 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------C----Chh
Confidence 100 0112345667778888888888888775421 1 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
+|+.+...|...|++++|+.+|++..+. .-.| ...++..+...+...|++++|.+.+..+++. ..+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCC
Confidence 7888888888888888888888876543 1122 2456777888888888888888888877664 122
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (581)
....+++.+...|.+.|++++|...|+++.+ ++ ..+|+.+...|...|+.++|+++|++....
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---- 420 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR---------KN----LISWNALIAGYGNHGRGTKAVEMFERMIAE---- 420 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3345677788888888888888888876532 22 235677888888888888888888887653
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
...|+. .++..+...+...|..++|.++|+.+.+.. +..|+. ..+..+...|.+.|++++|.+.++++
T Consensus 421 --g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~--- 488 (697)
T PLN03081 421 --GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPRA-MHYACMIELLGREGLLDEAYAMIRRA--- 488 (697)
T ss_pred --CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHC---
Confidence 123332 456677778888888888888888876521 122332 36777888888899999888877643
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q 008016 487 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK 566 (581)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 566 (581)
+..|+ ..++..+...+...|+.+ .|...+++.+++ .|+....+..++++|.+.|++++|.++++
T Consensus 489 ------~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 489 ------PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred ------CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 22233 246888888888899888 887777766542 24445678899999999999999999999
Q ss_pred HHHHHH
Q 008016 567 RLSNLR 572 (581)
Q Consensus 567 ~a~~l~ 572 (581)
++.+.+
T Consensus 553 ~m~~~g 558 (697)
T PLN03081 553 TLKRKG 558 (697)
T ss_pred HHHHcC
Confidence 887654
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=1.4e-18 Score=167.30 Aligned_cols=402 Identities=15% Similarity=0.112 Sum_probs=291.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
...+.++.++..|..++..|++++|..++.++++. .|....++..||.+|...|+.+++....-.+..+.
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 34467888999999999999999999999999987 88899999999999999999999988877665543
Q ss_pred hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (581)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (581)
+.++ ..|..++....++|++.+|.-+|.+|++.. |.........+.+|.+.|+...|...|.+++
T Consensus 204 ----p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 204 ----PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred ----CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2222 568889999999999999999999999862 3346677888999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (581)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (581)
..... .+...........+..+...++-+.|.+.++.++.... +......++.++.++.....++.|....
T Consensus 269 ~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 269 QLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred hhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 87320 11112233344557788888888999999999887422 2233345567888999999999998887
Q ss_pred HHHHHHHHhh------------------ccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH
Q 008016 353 KKALRVIKDS------------------NYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413 (581)
Q Consensus 353 ~~al~~~~~~------------------~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (581)
......-.+. -..+.+- ..+..+...++.+..+.++..+++..+..--. ....+
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d 412 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSD 412 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhh
Confidence 7665510000 0001111 11111244455555555566666554432111 11345
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
....+..++..|...|++.+|+.++..+... ........|..+|.+|..+|.+++|++.|++++...
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------ 479 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------ 479 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 5678899999999999999999999988662 222335689999999999999999999999999854
Q ss_pred CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 494 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 494 ~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
|+..++...|+.++..+|+.+ +|.+.+++...-- ...-+...+...........+|...|+.++=+..-..++..
T Consensus 480 --p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 480 --PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred --CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445578899999999999999 8888877743100 00001112344567788899999999998855554444443
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-19 Score=161.20 Aligned_cols=374 Identities=14% Similarity=0.084 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+...+...+..|+|+.|+.+|.+++.+ +|.+...+.+...+|...|+|++|.+--.+..++.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------- 66 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN------- 66 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------
Confidence 4567788899999999999999999987 77788889999999999999999998888776664
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC--------------------
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------------------- 259 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------------- 259 (581)
|.++..|..+|..+...|+|++|+..|.+.|+.. |.....+.+++.++....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d--------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD--------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC--------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 8888899999999999999999999999998852 223334444444441110
Q ss_pred -CHHHHHHHHHHHHHHHHHh--------------------cC----------------CCC---------------hh--
Q 008016 260 -RAKKAVEIYHRVITILELN--------------------RG----------------TES---------------AD-- 285 (581)
Q Consensus 260 -~~~~A~~~~~~al~~~~~~--------------------~~----------------~~~---------------~~-- 285 (581)
++-.....|...++..+.. .+ ... ..
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 0000001111111111000 00 000 01
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 286 ----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 286 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
.....-.+|.......++..|++.+..++++. .....+++.+.+|...|.+.+.+.....+++...+
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 23345678999999999999999999999873 34456788999999999999999999988876544
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh--c----------------CCCChHHHHHHHHHHH
Q 008016 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY--K----------------GKEHPSFVTHLLNLAA 423 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~ 423 (581)
. ..+...+...+..+|..|...++++.|+.+|++++...+.. . .-..|..+.-...-|.
T Consensus 290 ~---rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 290 L---RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred H---HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 2 12233355556667889999999999999999987654320 0 0011222222233345
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 503 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (581)
.++..|+|..|+..|.+++.. +|+....|.+.|.+|...|.+..|+.-.+.++++ +|.....+.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~ 430 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYL 430 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHH
Confidence 555555555555555555442 3444555555555555555555555555555443 344445555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016 504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 555 (581)
Q Consensus 504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 555 (581)
.-|.++..+.+++ +|++.|+++++. +|....+...+..++..+
T Consensus 431 RKg~al~~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence 5555555555555 555555555442 244444444444444443
No 35
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.87 E-value=2e-19 Score=185.82 Aligned_cols=335 Identities=13% Similarity=0.094 Sum_probs=194.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+...+..+.+.|++++|+.+|+.+... ........++..+..++...++++.+..++..+...- -.|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~--------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-----~~~ 156 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAG--------CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-----FEP 156 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCc
Confidence 444556677778888888887765431 1112334566777777777777777777776654431 112
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN-- 278 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 278 (581)
+ ..+++.+...|.+.|++++|..+|+++.+ + ...+|+.+...|.+.|++++|+.+|++.++.....
T Consensus 157 ~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 157 D-QYMMNRVLLMHVKCGMLIDARRLFDEMPE-------R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred c-hHHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 2 23456677777777777777777766532 1 13456777777777777777777777765321000
Q ss_pred --------------------------cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016 279 --------------------------RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (581)
Q Consensus 279 --------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (581)
..........+++.|...|.+.|++++|...|++.. +....+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~ 293 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVAW 293 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhHH
Confidence 000001123355677888888888888888887642 1234678
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (581)
+.+...|.+.|++++|..+|+++.+. +..|+. .++..+...+...|++++|.+++..+++.. .+
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~-----g~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~ 357 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDS-----GVSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FP 357 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHhC-------CC
Confidence 88888888888888888888887553 122332 244666677777777777777776665431 11
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492 (581)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 492 (581)
....+++.|...|.+.|+.++|...|++..+ ++ ..+|..+...|.+.|+.++|.++|+++.+.. .
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~- 422 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LISWNALIAGYGNHGRGTKAVEMFERMIAEG---V- 422 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-
Confidence 1223455556666666666666666554421 11 1245555556666666666666665544311 1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016 493 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 526 (581)
Q Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a 526 (581)
.|+ ..++..+...+...|..+ +|..+|+..
T Consensus 423 --~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m 452 (697)
T PLN03081 423 --APN-HVTFLAVLSACRYSGLSE-QGWEIFQSM 452 (697)
T ss_pred --CCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHH
Confidence 111 133444444455555554 444444444
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-19 Score=164.06 Aligned_cols=393 Identities=15% Similarity=0.131 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-------
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV------- 192 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 192 (581)
..+-.++.++-.|++..|..+...-. . ......+.+..+.++....++++|..++.......
T Consensus 51 d~~~~aq~l~~~~~y~ra~~lit~~~-l----------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~ 119 (611)
T KOG1173|consen 51 DIYWLAQVLYLGRQYERAAHLITTYK-L----------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE 119 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh-h----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence 35667788888888888877665431 1 34456677888999999999999988877321100
Q ss_pred ----hhcCCCc-------chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH---------------------cC--
Q 008016 193 ----DSLKDDE-------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---------------------YG-- 238 (581)
Q Consensus 193 ----~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~~-- 238 (581)
..+..+. ......++..|.+|....+.++|...|.+|+...... +.
T Consensus 120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL 199 (611)
T ss_pred hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc
Confidence 0000000 1112345566788888888999999998886431000 00
Q ss_pred ---------------------------------CC-----CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 239 ---------------------------------KT-----SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 239 ---------------------------------~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
++ ...........+..++..+++.+..+..+..++.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~------ 273 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK------ 273 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh------
Confidence 00 0012233444556666666777666666666655
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
+.+.....-..+| ++...|+..+=..+-.+.++ ..|..+.+|..+|..|...|++.+|..+|.++..+
T Consensus 274 -dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~--------~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-- 341 (611)
T KOG1173|consen 274 -DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVD--------LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-- 341 (611)
T ss_pred -CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHH--------hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--
Confidence 2233333344555 66677765544333333333 36777888999999999999999999999999876
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
++.+...|...|..+...|..++|+..|..|-++... .| .....+|.-|...++++-|..+|.+
T Consensus 342 --------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G----~h----lP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 342 --------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG----CH----LPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred --------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC----Cc----chHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445667889999999999999999999998887532 22 2345678889999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHH
Q 008016 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 520 (581)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~ 520 (581)
|+.+ .|.....+..+|.+.+..+.|.+|..+|+.++...+... +..+.....+.+||.++.++++++ +|+
T Consensus 406 A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI 475 (611)
T KOG1173|consen 406 ALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAI 475 (611)
T ss_pred HHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHH
Confidence 9996 355556778999999999999999999999996555443 333455667899999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 521 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 521 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
.++++++.+ .|..+.++..+|.+|..+|+++.|++.|.+++.+.+..
T Consensus 476 ~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999999985 36667889999999999999999999999999887643
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.3e-18 Score=173.46 Aligned_cols=396 Identities=12% Similarity=0.014 Sum_probs=267.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
..+..+...++.|+++.|++.|+++++. .|..+.....++.++...|+.++|+.+++++.. ..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~----------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p~ 98 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA----------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------SM 98 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------CC
Confidence 4667778888999999999999999876 555533333777777788999999999988751 11
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
+.....+..+|.++...|++++|+..|+++++.. ++. ..++..++..+...++.++|+..++++...
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----- 165 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTN---PDLISGMIMTQADAGRGGVVLKQATELAER----- 165 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----
Confidence 2223345556888999999999999999988752 222 455567788889999999999988887765
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------------cC---------CCCc-----------
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------------YG---------ENDG----------- 326 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~---------~~~~----------- 326 (581)
.|.... +..++.++...++..+|+..++++++..... .+ ..+|
T Consensus 166 ---dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 166 ---DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred ---CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 333222 2445666666777777888888887652100 00 0000
Q ss_pred ------------------------------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 327 ------------------------------------------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 327 ------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....+....-.++...|++.+++..|+.....
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 00001111111222333333333333332211
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
+..-|. .+....|..|...+++++|+.+|++++.-.... ...+........|-..|...+++++|..++
T Consensus 322 -------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 322 -------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred -------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 111121 233567888888888888888888876532110 011222333456777889999999999999
Q ss_pred HHHHHHHHH-h--c----CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016 439 RICLDIMTK-T--V----GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 511 (581)
Q Consensus 439 ~~al~~~~~-~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 511 (581)
++..+...- . . ...+|+.......++.++...|++.+|++.+++.+... |........+|.++..
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLA 462 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHh
Confidence 988762110 0 1 13457777888889999999999999999999997654 4444778899999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 512 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 512 ~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
.|.+. +|+..++.+..+ +|+...+....+.++..+|++.+|....+.+++..++...
T Consensus 463 Rg~p~-~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 463 RDLPR-KAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred cCCHH-HHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999 999999777653 4666788889999999999999999999888877666544
No 38
>PLN03077 Protein ECB2; Provisional
Probab=99.86 E-value=9.3e-19 Score=185.49 Aligned_cols=386 Identities=12% Similarity=0.058 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHH------------------------HHH--hcCCCChhHHHHHHHHHHHH
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVK------------------------EQI--NAGNKGIEEVAILDIIALGY 172 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~--~~~~~~~~~~~~~~~l~~~~ 172 (581)
..+......+.+.|++++|+.+|+++.+.-. .+. ....+...+..+++.+...|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 4466777888889999999998888754200 000 00001112334445555555
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (581)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (581)
.+.|++++|..+|+++.. ++ ..+|+.+...|.+.|++++|+.+|+++.... ..++ ..++..+-
T Consensus 334 ~k~g~~~~A~~vf~~m~~---------~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd----~~t~~~ll 396 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---------KD-AVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPD----EITIASVL 396 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---------CC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCC----ceeHHHHH
Confidence 555555555555554311 11 1234555555556666666666655543321 1111 12333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (581)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (581)
..+...|++++|.+++..+.+. +......+++.|...|.+.|++++|.+.|++..+ ....+|
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~ 458 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISW 458 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeH
Confidence 4555555555555555554433 1122345677788888888888888888876431 123467
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH-------------------------------HHHHHH
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM-------------------------------RIDLAE 381 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------------------------------~~~la~ 381 (581)
+.+...|...|+.++|+.+|+++... ..|+...+..+ .+.+..
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~~------~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLLT------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC------CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 78888888999999999998887642 23443332221 134456
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (581)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (581)
.|.+.|+.++|...|+.. .....+|+.+...|...|+.++|+++|++..+. +..|+. .++.
T Consensus 533 ~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~ 593 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFI 593 (857)
T ss_pred HHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHH
Confidence 777778888887777653 112357888899999999999999999987652 123443 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH------------H-
Q 008016 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL------------R- 528 (581)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~------------~- 528 (581)
.+...+.+.|+.++|.++|+++.+.. +-.|+ ...+..+..++.+.|+.+ +|.+++++.- .
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~-eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHYACVVDLLGRAGKLT-EAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHHhCCCHH-HHHHHHHHCCCCCCHHHHHHHHHH
Confidence 67778889999999999999886433 22233 267888999999999988 8888887630 0
Q ss_pred ------------HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 529 ------------IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 529 ------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
..++++ .-.|+....+..++++|...|+|++|.++.+.+.+.+
T Consensus 667 c~~~~~~e~~e~~a~~l~-~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 667 CRIHRHVELGELAAQHIF-ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred HHHcCChHHHHHHHHHHH-hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 011111 1224445667888999999999999999988876653
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=4.8e-18 Score=150.85 Aligned_cols=362 Identities=17% Similarity=0.129 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC-
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD- 197 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 197 (581)
..+...+..+.+.|.|+.|+..|+..++. .|... +-.+|..|++..|+-++-.+.|.+++.+-....+
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~----------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd 345 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE----------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD 345 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh----------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence 34666777888999999999999988775 33333 3345666777778877777777776653211111
Q ss_pred ------CcchH--------------------------------------------------------------HHHHHHH
Q 008016 198 ------DEPLL--------------------------------------------------------------DAILLHM 209 (581)
Q Consensus 198 ------~~~~~--------------------------------------------------------------~~~~~~l 209 (581)
++|.. ...-.+.
T Consensus 346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k 425 (840)
T KOG2003|consen 346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK 425 (840)
T ss_pred cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence 11100 0001122
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
+.-+.+.|+++.|++.+.-.- ..+......+-.+|..+++.+ .++.+|..+...++.+ +...+
T Consensus 426 a~~~lk~~d~~~aieilkv~~-------~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~ 490 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFE-------KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DRYNA 490 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHH-------hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCH
Confidence 334566677777776553221 124444455667777777764 4788999999888877 44557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (581)
.++.+-|++-+..|++++|.+.|++++. ++.....+++++|..+..+|+.++|+++|-+.-.+....
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn----- 557 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN----- 557 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-----
Confidence 7888999999999999999999999985 456778899999999999999999999999988776542
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
+.++..++.+|..+.+..+|++++.++..+. |....++..||.+|-+.|+-.+|.+++-.....
T Consensus 558 -----~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry--- 621 (840)
T KOG2003|consen 558 -----AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--- 621 (840)
T ss_pred -----HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---
Confidence 5567889999999999999999999876652 333457888999999999999999988766553
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
-|....+...||..|....-+++|+.+|+++.-+. |........++.++.+.|++. +|.++|+..-
T Consensus 622 -----fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk~~h 687 (840)
T KOG2003|consen 622 -----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYKDIH 687 (840)
T ss_pred -----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHHHHH
Confidence 35556677889999999999999999999985543 666677788999999999999 9998888765
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016 528 RIQEREFGSESEEVMLTLKKVVSYLDKLGR 557 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 557 (581)
. ..|+..+++.-|.++....|-
T Consensus 688 r--------kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 688 R--------KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred H--------hCccchHHHHHHHHHhccccc
Confidence 4 246777888888877777764
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-17 Score=148.80 Aligned_cols=349 Identities=14% Similarity=0.075 Sum_probs=253.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHH-------HHHHhcCCCChhHHHH-------------HHHHHHHHHHcCChHH
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAV-------KEQINAGNKGIEEVAI-------------LDIIALGYVYIGDLKF 180 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~ 180 (581)
++-.|..+.+.|..+.|++.|..++... .+.. ....+.+.... -.-++.++......++
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~-~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELS-ELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHH-HhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 6677788889999999999998876521 1110 00011111111 1223444444445555
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260 (581)
Q Consensus 181 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 260 (581)
+..-.+....+ ..|.....-...|.+...+.++++|+..|+...+- +|-...-.-...++++-..+
T Consensus 246 ~~~k~e~l~~~------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 246 ALQKKERLSSV------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHhc------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhh
Confidence 55544443332 22444444567788899999999999999988762 33223333333444444433
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (581)
-.+-.-+.+.+..+ +...+.+...+|+.|.-.++.++|+.+|++++++ +|....+|..+|.-|.
T Consensus 312 ~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYV 375 (559)
T ss_pred hHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHH
Confidence 22222222333333 2334556778899999999999999999999987 6788899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (581)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (581)
...+...|++.|+.|+++.+ .-..+|+.||+.|..++-..=|+-+|++|... .|.....+..
T Consensus 376 EmKNt~AAi~sYRrAvdi~p----------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~a 437 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINP----------RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVA 437 (559)
T ss_pred HhcccHHHHHHHHHHHhcCc----------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHH
Confidence 99999999999999999832 22678899999999999999999999999886 3445568889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 500 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 500 (581)
||.+|.+.++.++|+.+|.+++... .....++..||.+|.+.++..+|..+|++.++.. ..-|...+.+..
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~k 508 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIK 508 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHH
Confidence 9999999999999999999999841 1234688999999999999999999999999866 344566677888
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 501 ALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
+...|+.-+.+.++++ +|-.+..+++.
T Consensus 509 a~~fLA~~f~k~~~~~-~As~Ya~~~~~ 535 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFD-EASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhhcchH-HHHHHHHHHhc
Confidence 8888999999999999 88777766654
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-18 Score=157.35 Aligned_cols=279 Identities=15% Similarity=0.185 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (581)
..+..+.+...+..++..++|.+-.++.+..++. .|-+..++..-.-++...|+..+-..+-.++.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--- 306 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--- 306 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH---
Confidence 3456667889999999999999999999999887 555555554444488888877665554444433
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
..|..+..|+.+|..|...|++.+|.++|.++..+ ++..+.+|...|..+...|..++|+..|..|-+
T Consensus 307 ----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 307 ----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred ----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 34777778999999999999999999999999775 345678899999999999999999999999988
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (581)
+... ...-...+|.-|...++++-|..+|.+|+.++ |.....+..+|.+.+..+.|.+|..+|+
T Consensus 375 l~~G--------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 375 LMPG--------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hccC--------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 8432 12234567899999999999999999999873 4455678899999999999999999999
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH
Q 008016 354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 433 (581)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 433 (581)
.++...+.. .+....+..++.+||.++.+++++++|+..+++++... |..+.++..+|-+|..+|+++.
T Consensus 439 ~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 439 KALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHH
Confidence 999776663 34444566678999999999999999999999999873 5556788999999999999999
Q ss_pred HHHHHHHHHHH
Q 008016 434 AERLLRICLDI 444 (581)
Q Consensus 434 A~~~~~~al~~ 444 (581)
|+++|.+++.+
T Consensus 508 Aid~fhKaL~l 518 (611)
T KOG1173|consen 508 AIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.83 E-value=1.9e-17 Score=175.64 Aligned_cols=368 Identities=13% Similarity=0.059 Sum_probs=222.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+......|.+.|++++|..+|+++. ..+..+++.+...|.+.|++++|..++.++.... -.|
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~-------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-----~~P 286 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-------------RRDCISWNAMISGYFENGECLEGLELFFTMRELS-----VDP 286 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCC-------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCC
Confidence 3455677888899999988888752 2234578888888888888888888888876531 112
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
+. .++..+...+...|+.+.|.+++..+.+.. ......+++.+...|.+.|++++|.++|++...
T Consensus 287 d~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------- 351 (857)
T PLN03077 287 DL-MTITSVISACELLGDERLGREMHGYVVKTG-------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------- 351 (857)
T ss_pred Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Confidence 22 123444444455555555555555444321 011134455555555555555555555544210
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HHcCCCCchHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT----------------------------KVYGENDGRVGMAM 332 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~ 332 (581)
+ ...+|+.+...|.+.|++++|.++|+++.+..- ............++
T Consensus 352 ---~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 352 ---K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ---C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 0 123455555555555555555555554432100 00000111223455
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (581)
+.|...|.+.|++++|.++|+++.+ ++ ..+|+.+...|...|+.++|+.+|++.+.. ..++..
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~---------~d----~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~ 490 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE---------KD----VISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSV 490 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHh
Confidence 6666777777777777777665321 11 124466667777777777777777776531 111111
Q ss_pred HHH-------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016 413 SFV-------------------------------THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (581)
Q Consensus 413 ~~~-------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (581)
... ..++.|...|.+.|+.++|...|+.. .+ ...+|.
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----------~~-d~~s~n 558 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----------EK-DVVSWN 558 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----------CC-ChhhHH
Confidence 110 11234456777777777777766553 12 234788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 008016 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV 541 (581)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 541 (581)
.+...|...|+.++|.++|+++.+. ...|+. .++..+...+.+.|..+ +|..+|+...+.+ + -.|+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~a~~~~g~v~-ea~~~f~~M~~~~----g-i~P~- 624 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVES---GVNPDE----VTFISLLCACSRSGMVT-QGLEYFHSMEEKY----S-ITPN- 624 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCc----ccHHHHHHHHhhcChHH-HHHHHHHHHHHHh----C-CCCc-
Confidence 8999999999999999999987652 222333 45677778899999999 9999998876432 1 1233
Q ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 542 MLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 542 ~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
...+..+..+|.+.|++++|.++++++
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 477899999999999999999999885
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=4.9e-16 Score=147.44 Aligned_cols=395 Identities=17% Similarity=0.116 Sum_probs=279.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (581)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (581)
.....+...|++..+.+.|++++.. .......++.++.+|...|.-..|+.+++......+ ..++.
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~----------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~ 393 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPF----------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDI 393 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh----------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcc
Confidence 3445667889999999999998765 455667899999999999999999999988655432 22223
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc----CC-------HHHHHHHHHHH
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYHRV 271 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~-------~~~A~~~~~~a 271 (581)
...+..-..++...|.+++++.+..+++...... .......++..+|.+|..+ .. ..+++..++++
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3333444455667899999999999999976432 3334566777777777644 22 33455555555
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Q 008016 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 351 (581)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 351 (581)
++. ++....+.+.++.-|..+++.+.|..+..+++++. ....+.+|..++.++...+++.+|+.+
T Consensus 471 v~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 471 VQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred Hhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 554 33344778899999999999999999999999862 335678899999999999999999999
Q ss_pred HHHHHHHHHhhccCC----------CCChHHHHHHHH-H----------------------HHHHHHcCChHHHHHHHHH
Q 008016 352 YKKALRVIKDSNYMS----------LDDSIMENMRID-L----------------------AELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 352 ~~~al~~~~~~~~~~----------~~~~~~~~~~~~-l----------------------a~~~~~~g~~~~A~~~~~~ 398 (581)
.+.++.-........ .+......+... | +.+....++..+|.+...+
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 999988754310000 000000000000 0 0001111233444444444
Q ss_pred HHHHHHHh---c-------------CCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016 399 CLLITEKY---K-------------GKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (581)
Q Consensus 399 al~~~~~~---~-------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (581)
+....... . +++++. ....+...+..+...++.++|..++.++-.+ .|.....+
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~ 687 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVY 687 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHH
Confidence 43333211 0 111111 2235556788888999999999999888775 46777888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH--HHHHHHHHHHHhcCCCC
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGSES 538 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~--~~~~a~~~~~~~~~~~~ 538 (581)
+..|.++...|++.+|...|..++.+. |+|+ .+...+|.++...|+.. -|.. ++..++++ +
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv---~s~~Ala~~lle~G~~~-la~~~~~L~dalr~--------d 750 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALD-----PDHV---PSMTALAELLLELGSPR-LAEKRSLLSDALRL--------D 750 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCc---HHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh--------C
Confidence 999999999999999999999998764 6666 67888999999999887 6666 88888874 4
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 539 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 539 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
|.+..+|+.+|.++.++|+.++|.++|.-++.+.+.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 677889999999999999999999999999988654
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.1e-17 Score=156.64 Aligned_cols=349 Identities=18% Similarity=0.139 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
...+...|+..+..|++++|..++.++++.. |....++..||.+|..+|+.+++...+-.|-.+ .+.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKD 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCC
Confidence 4556677778888899999999999987765 666778999999999999999999888776554 2222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
...|..++.....+|++.+|.-+|.+|++. .|.........+.+|.+.|+...|...|.+++....
T Consensus 207 ---~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--- 272 (895)
T KOG2076|consen 207 ---YELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--- 272 (895)
T ss_pred ---hHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---
Confidence 377889999999999999999999999998 566678888899999999999999999999988632
Q ss_pred CCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 322 GENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 322 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
+.+. .........+..+...++-+.|++.++.++...... .. ...++.++.++.....++.|........
T Consensus 273 -~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 273 -PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----AS----LEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred -chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----cc----ccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 1111 123334455777888888899999999998832211 11 1223567888999999999888776544
Q ss_pred HHHHH------------------h--cCCC-ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016 401 LITEK------------------Y--KGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP 459 (581)
Q Consensus 401 ~~~~~------------------~--~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 459 (581)
....+ . .+.+ .+....+...++.+..+.++..+++..+..--. ....+....
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d~~dL 416 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSDDVDL 416 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhhhHHH
Confidence 40000 0 0111 111222355555566666666666655433211 112345668
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539 (581)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~ 539 (581)
+..++.++...|++.+|+.++...... ........+..+|.+|..+|.++ +|++.|++++.. .|
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p 480 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------AP 480 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CC
Confidence 899999999999999999999987652 12233568999999999999999 999999999984 47
Q ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 540 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
+..++...|+.+|..+|+.++|.+.+.+.
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77888999999999999999999988874
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=2.8e-16 Score=134.70 Aligned_cols=320 Identities=16% Similarity=0.093 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
..+..-+..+..++..|++..|+..|..+++. +|..-.+++..|.+|..+|+-..|+.-+.+++++.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--- 102 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--- 102 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---
Confidence 34556788999999999999999999999876 89999999999999999999999999999987764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
|+...+-...|.++.++|++++|+.-|..+++......... .......+......+...|+...|+.+.
T Consensus 103 ----pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 103 ----PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred ----ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 77777778889999999999999999999987421100000 0011223444556667789999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH
Q 008016 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 348 (581)
Q Consensus 269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 348 (581)
...+++ .|..+..+...+.+|...|+...|+.-++.+-++ ..+....++.++.+++..|+.+.+
T Consensus 179 ~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 179 THLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHH
Confidence 999987 6777888888999999999999999999888765 234457788899999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH---------HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 008016 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL---------LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419 (581)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~---------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 419 (581)
+...++++++ +|++......|-.+-.+ ....++|.++++..++.++.-. ...+.......
T Consensus 243 L~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep----~~~~ir~~~~r 311 (504)
T KOG0624|consen 243 LKEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP----EETMIRYNGFR 311 (504)
T ss_pred HHHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC----cccceeeeeeh
Confidence 9999999985 66665544444433332 3344555555555555444310 11222344556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.+..|+..-|++.+|+....+++++ .|+.+.++...+.+|.....|+.|+.-|+++.+..
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 6788999999999999999999984 67788899999999999999999999999998854
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.8e-16 Score=157.34 Aligned_cols=363 Identities=12% Similarity=-0.007 Sum_probs=249.6
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.|..+...+..+.+..+.|+++.|+..|+++++.. |........+..++...|+.++|+.++++++.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~------ 96 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS------ 96 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc------
Confidence 56677788888999999999999999999987764 22211112677777788999999999999982
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
..+.....+..+|.++...|++++|++.|+++++. .|....++..++.++...++.++|+..++++...
T Consensus 97 --p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 97 --SMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER- 165 (822)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-
Confidence 11222445556688999999999999999999987 4555667778899999999999999999988764
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH---
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE--- 394 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--- 394 (581)
.|.... +..++.++...++..+|+..++++++.. |+..... ..+..++...|-...|.+
T Consensus 166 -------dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~---~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 166 -------DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVL---KNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred -------CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHH---HHHHHHHHHcCCcHHHHHHHH
Confidence 333222 3455666666788877999999988752 2222211 111112222221111111
Q ss_pred --------------------------------------HHHHHHHHHHHhc-----------------------------
Q 008016 395 --------------------------------------LLEECLLITEKYK----------------------------- 407 (581)
Q Consensus 395 --------------------------------------~~~~al~~~~~~~----------------------------- 407 (581)
..++++......+
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 1111221111111
Q ss_pred --------------CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 008016 408 --------------GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473 (581)
Q Consensus 408 --------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 473 (581)
+..-|.. +....|..|...+++++|+.+|++++.-.... ...+........|...|...+++
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccH
Confidence 1111222 34456778888888888888888876521000 01122233345778889999999
Q ss_pred HHHHHHHHHHHHHHH---HHc----CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008016 474 KEAEKLVLEALYIRE---IAF----GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 546 (581)
Q Consensus 474 ~~A~~~~~~a~~~~~---~~~----~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 546 (581)
++|..++++..+... ..+ ...+|+.......++.++...|+.. +|++.+++.+.. .|.+...+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~-~Ae~~le~l~~~--------aP~n~~l~~ 454 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP-TAQKKLEDLSST--------APANQNLRI 454 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence 999999999876221 001 1356777888889999999999999 999999998763 366677888
Q ss_pred HHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 547 KVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 547 ~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
.+|.++..+|.+.+|...++.+..+.+..
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 99999999999999999999988886653
No 47
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.80 E-value=7.6e-15 Score=158.11 Aligned_cols=395 Identities=12% Similarity=0.014 Sum_probs=277.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189 (581)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 189 (581)
...+.......+...+..+...|++..+..+++..-... ....+......+.++...|++++|...+..+.
T Consensus 366 ~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 366 AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444445666677777888777666554421100 01112234566777888999999999999876
Q ss_pred HHHhhcC-CCc-chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008016 190 GIVDSLK-DDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (581)
Q Consensus 190 ~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (581)
....... ... .........++.++...|++++|..++++++.... ..+......+...+|.++...|++++|...
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6543321 111 12344455678889999999999999999987421 112223455678899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHH
Q 008016 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347 (581)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 347 (581)
+++++...... + +......++..+|.++...|++++|...+++++.......+...+.....+..+|.++...|++++
T Consensus 514 ~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 514 MQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999987653 2 223345677889999999999999999999999988775433334445556788999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHH
Q 008016 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYS 426 (581)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~ 426 (581)
|...+.+++...... + +......+..++.++...|++++|...++++..+.... ...... ..........+.
T Consensus 592 A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 592 AEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--RYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccHhHhhHHHHHHHHHHH
Confidence 999999999986642 2 22334566789999999999999999999998875442 111111 111111234456
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
..|+.+.|..++...... .. ............++.++...|++++|...+++++...+.. ........++..+|
T Consensus 665 ~~g~~~~A~~~l~~~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la 738 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLN 738 (903)
T ss_pred HCCCHHHHHHHHHhcCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHH
Confidence 689999998887664431 00 0111112234678999999999999999999999976543 23345667888999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016 507 SIQTRLGEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 507 ~~~~~~g~~~~~A~~~~~~a~~~~~~ 532 (581)
.++...|+.. +|...+.+++++...
T Consensus 739 ~a~~~~G~~~-~A~~~L~~Al~la~~ 763 (903)
T PRK04841 739 QLYWQQGRKS-EAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHH-HHHHHHHHHHHHhCc
Confidence 9999999999 999999999988744
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=8.7e-18 Score=142.88 Aligned_cols=281 Identities=15% Similarity=0.168 Sum_probs=224.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
+...|...|-......+++-.............-.--..+|.||.+.|-+.+|...++..+... . ..+.+..
T Consensus 190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-----~---~~dTfll 261 (478)
T KOG1129|consen 190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-----P---HPDTFLL 261 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-----C---chhHHHH
Confidence 4556777777666666554332211111222333445689999999999999999999876653 1 2245678
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
++.+|....+...|+..+.+.++. .|.....+..++.++..++++++|.++|+.+++. ++..+.
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvE 325 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVE 325 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccce
Confidence 999999999999999999998874 3455778889999999999999999999999987 566677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
+...+|.-|+..++.+-|+.+|++.+.+. - .....+.++|.++...++++-++..|++++.... .
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqmG-----~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-------~ 390 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQMG-----A---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-------Q 390 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHhc-----C---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------C
Confidence 88888999999999999999999999872 2 3456789999999999999999999999998753 3
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
+...+.+|+|+|.+....|++.-|..+|+-++.. +++...++++||.+-.+.|+.++|..++..+-..
T Consensus 391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~---- 458 (478)
T KOG1129|consen 391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV---- 458 (478)
T ss_pred cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh----
Confidence 4556788999999999999999999999987753 5667789999999999999999999999988764
Q ss_pred cCCCCcchHHHHHHHH
Q 008016 449 VGPDDQSISFPMLHLG 464 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la 464 (581)
.|+..+...+++
T Consensus 459 ----~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 459 ----MPDMAEVTTNLQ 470 (478)
T ss_pred ----Ccccccccccee
Confidence 355444444444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=6.5e-15 Score=125.58 Aligned_cols=305 Identities=14% Similarity=0.143 Sum_probs=233.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (581)
+-.+..+.-..+.++|++.|-.+++. ++...++...||..|...|..+.|+.+.+.+...-+ -....
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd---lT~~q 105 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD---LTFEQ 105 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---CchHH
Confidence 34555667788999999999999875 888999999999999999999999999988765421 11223
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
...++..+|.-|...|-++.|+..|....+. ......++..|..+|....+|++|++..++..++..+ +
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~ 174 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T 174 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence 4556889999999999999999999987653 2334677889999999999999999999887776322 2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
.....+..+..|+..+....+.+.|...+.++++. +|..+.+-..+|.++...|+|..|++.++.+++.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--- 243 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--- 243 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence 35567888999999999999999999999999975 5667778888999999999999999999998774
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
++..+..+...|..+|...|+.++.+..+.++.+... .+ .....++.+-....-.+.|..++.+-
T Consensus 244 ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 244 ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 5667777888999999999999999999999887632 11 23334455555566667777776665
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHH
Q 008016 442 LDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALY 485 (581)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~ 485 (581)
+. .+|... ..+.+...... -|...+....++.++.
T Consensus 309 l~--------r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 309 LR--------RKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred Hh--------hCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 55 356654 34444433332 2445555556665554
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=1.9e-18 Score=157.99 Aligned_cols=267 Identities=23% Similarity=0.239 Sum_probs=110.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (581)
..+|.++...|++++|++.+.+.+... ..+.....+..+|.+....++++.|+..|++++..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 356999999999999999997665431 124455778889999999999999999999998752 223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (581)
...+..++.+ ...+++++|..+++++.+.. +++ ..+.....++...|+++++...++++...
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------ 139 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEEL------ 139 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred cccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence 4456667766 68899999999998876642 122 22345667889999999999999987642
Q ss_pred CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (581)
...+.....+..+|.++.+.|+.++|+..++++++. .|+...+...++.++...|+++++.+.++......
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~- 210 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA- 210 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 223455678889999999999999999999999996 45556677889999999999999888888776643
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 489 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 489 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
+++| ..+..+|.++...|+++ +|+.++++++.. +|+...++..+|.++...|+.++|..+++++
T Consensus 211 ----~~~~---~~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 211 ----PDDP---DLWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp ----HTSC---CHCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred ----cCHH---HHHHHHHHHhccccccc-cccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence 3344 34678899999999999 999999998874 4666778889999999999999999999998
Q ss_pred HHHH
Q 008016 569 SNLR 572 (581)
Q Consensus 569 ~~l~ 572 (581)
+..-
T Consensus 275 ~~~l 278 (280)
T PF13429_consen 275 LRLL 278 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7653
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-15 Score=131.70 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
+.....+..+|.+++..|++++|+..|+++..+ +|.........|.++...|++++-..+....+.+-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--- 297 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--- 297 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence 345677889999999999999999999999877 788888888899999999999998887777766521
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
....-|..-+...+..+++..|+.+-+++++.-. .+ ...+...|.++...|+.++|.-.|+.|..
T Consensus 298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-------r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-------RN---HEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-------cc---chHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 2334455567778889999999999999998622 22 33457789999999999999999999987
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHH-cCChHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKL 479 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~ 479 (581)
+. |....+|..|..+|...|++.+|......++..+ +..+.++.-+| .++.. -.--++|.++
T Consensus 363 La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 363 LA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence 74 5667899999999999999999999998888764 33345555554 33332 3345789999
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016 480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 559 (581)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 559 (581)
+++++.+. |.+..+...++.++...|.+. .++.++++.+..+ ++ ...+..||+++...+.+.
T Consensus 427 ~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~-D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 427 AEKSLKIN--------PIYTPAVNLIAELCQVEGPTK-DIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred HHhhhccC--------CccHHHHHHHHHHHHhhCccc-hHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHH
Confidence 99998753 777788899999999999999 9999999999864 22 356789999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 008016 560 EKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 560 ~A~~~~~~a~~l~~~~~~~ 578 (581)
+|.+.|..|+.+.|+.+.+
T Consensus 489 ~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhcCccchHH
Confidence 9999999999998876543
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=4.4e-15 Score=127.50 Aligned_cols=320 Identities=14% Similarity=0.143 Sum_probs=246.8
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.|.-+.-...+|.-+...|++..|+..|..|++ .+|....+++..|.+|...|+-.-|+.-+.+++++
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve--------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE--------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence 344555578899999999999999999999987 35667888999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH------------HHHHHHHHHHCCCHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA------------MCSLAHAKCANGNAE 346 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~ 346 (581)
.|+...+....|.++.++|++++|+.-|..++..- ++......+ +......+...|+..
T Consensus 102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchh
Confidence 78888899999999999999999999999998741 111112222 223344456789999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (581)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (581)
.|+++....+++ .++-+..+...+.+|...|++..|+.-++.+-.+. .+....++.++.++.
T Consensus 173 ~ai~~i~~llEi----------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 173 NAIEMITHLLEI----------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLY 234 (504)
T ss_pred hHHHHHHHHHhc----------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHH
Confidence 999999998887 23335566788999999999999999998876653 233467888999999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH---------HHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-Ch
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-SL 496 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~ 496 (581)
..|+.+.++...++.+.+ .|+|......|..+ +.-....++|.++++..++.++.. |. .+
T Consensus 235 ~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~~ 304 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEETM 304 (504)
T ss_pred hhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Ccccc
Confidence 999999999999988874 45554333333222 223345566777777776665522 22 12
Q ss_pred hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 497 ~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
-.......+..++...|++- +|+....+++++ .|+.+.++...|..|..-..|++|+.-|++|.++.++..
T Consensus 305 ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred eeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 23344566788999999998 999988888874 578889999999999999999999999999998876544
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.4e-14 Score=123.48 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=226.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
.-|.-+.-.++.++|++.|.++++ .++...++...||..|...|..+.|+...+..++.- +-......
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~ 107 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRL 107 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHH
Confidence 345556677899999999999887 356778999999999999999999999887765531 11233456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (581)
.++..||.-|+..|-++.|+..|....+. ......+...|..+|....++++|++..++..++. ..+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-----~q~ 174 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-----GQT 174 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-----Ccc
Confidence 78899999999999999999999987753 23345678889999999999999999998887762 234
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
....++..+..|+..+....+.+.|+..+.++++. +|....+-..+|.++...|+|+.|++.++.+++-
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--- 243 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--- 243 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence 46677888899999999999999999999999876 3556677788999999999999999999999873
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
++..+..+...|..+|.+.|+.++....+.++.+... .+ .....++..-....-.+ .|..++.+-+
T Consensus 244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~-~Aq~~l~~Ql 309 (389)
T COG2956 244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGID-AAQAYLTRQL 309 (389)
T ss_pred ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChH-HHHHHHHHHH
Confidence 4455667888999999999999999999999987541 12 22334444444444444 6666665555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH---HcCChhhhHHHHHHHH
Q 008016 528 RIQEREFGSESEEVMLTLKKVVSYLD---KLGRKEEKFPLKKRLS 569 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~ 569 (581)
. .+|..... +.+..... ..|+..+.+..++.++
T Consensus 310 ~--------r~Pt~~gf-~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 310 R--------RKPTMRGF-HRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred h--------hCCcHHHH-HHHHHhhhccccccchhhhHHHHHHHH
Confidence 4 24544333 33333322 2345666666666654
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.4e-17 Score=152.31 Aligned_cols=267 Identities=18% Similarity=0.166 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
.+..|..++..|++++|++.+.+.+... .++.....+..+|......|+++.|+..++++.... +
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~--- 75 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----K--- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc----c---
Confidence 3456888999999999999997665431 135666788889999999999999999999987653 2
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
.....+..++.+ ...+++++|..+++++.+.. . ....+.....++...|+++++...++++...
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------ 139 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------G---DPRYLLSALQLYYRLGDYDEAEELLEKLEEL------ 139 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred cccccccccccc-cccccccccccccccccccc------c---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence 223345566666 68999999999998876532 1 1334556677889999999999999987743
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
...+.....+..+|.++...|+.++|+..++++++. .|....+...++.++...|+++++.+.+........
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 123455778899999999999999999999999987 455566777899999999999998888887766532
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
+++. .+..+|.++...|++++|+.++++++.. +|....++..+|.++...|+.++|..++++
T Consensus 212 -------~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 212 -------DDPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -------TSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT--------------
T ss_pred -------CHHH---HHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence 2222 3367899999999999999999998875 355566788999999999999999999999
Q ss_pred HHHH
Q 008016 441 CLDI 444 (581)
Q Consensus 441 al~~ 444 (581)
++..
T Consensus 274 ~~~~ 277 (280)
T PF13429_consen 274 ALRL 277 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 8764
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=7.3e-17 Score=137.34 Aligned_cols=269 Identities=15% Similarity=0.093 Sum_probs=218.7
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhh-cCCCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDS-LKDDEP--LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (581)
+|+..+|...|........++... ....+. ...+.-..+|.+|...|.+.+|.+.++.++... . ..++
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~------~---~~dT 258 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF------P---HPDT 258 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC------C---chhH
Confidence 466677777777666554443211 111111 122334679999999999999999999998742 2 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
+..|+.+|....+...|+..+.+.++. .|..+..+..++.++..++++++|.++|+.+++. ++.
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~ 322 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPI 322 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCc
Confidence 788999999999999999999999886 5667788899999999999999999999999975 556
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
.+.+...+|..|+..++++-|+.+|.+.+++ +...+ ..+.|+|.++...+++|-++..|++++....
T Consensus 323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat--- 389 (478)
T KOG1129|consen 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT--- 389 (478)
T ss_pred cceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc---
Confidence 6677777888999999999999999999997 33333 3458999999999999999999999998752
Q ss_pred CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.....+.+|+++|.+....|++.-|...|+-++. .+++...++++||.+-.+.|+.++|..++..+-...
T Consensus 390 --~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 390 --QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred --CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 3455678999999999999999999999998886 467788899999999999999999999999886543
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=6e-15 Score=141.96 Aligned_cols=314 Identities=15% Similarity=0.112 Sum_probs=217.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
..-|......|+++.|.+.+.++.+.. |.....+...|.++...|++++|..++.++.+.. |..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~ 151 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GND 151 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcC
Confidence 456777788999999999998876631 2224455677899999999999999999987652 222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 287 -VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 287 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
..+....+.++...|++++|...+++.++. .|....++..++.++...|++++|.+.+.+..+..
T Consensus 152 ~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~------ 217 (409)
T TIGR00540 152 NILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG------ 217 (409)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------
Confidence 223444599999999999999999998875 34555778889999999999999999999887651
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
..++............-+...+..+++.+.+.++.... ....+.....+..++..+...|++++|.+.++++++.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~----p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~- 292 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ----PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK- 292 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC----CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence 12222222221222222233344444455555554432 1112234567888999999999999999999999984
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 525 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~ 525 (581)
.++++..... ..........++.+++.+.++++++.. |++|. ...+..+|.++.+.|+++ +|.++|++
T Consensus 293 ----~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~~le~ 360 (409)
T TIGR00540 293 ----LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAADAFKN 360 (409)
T ss_pred ----CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHHHHHH
Confidence 1222221101 112223344578888888888887643 44443 367889999999999999 99999995
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 526 VLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 526 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
+.... ..|+... +..+|.++.+.|+.++|.++|++++...-.
T Consensus 361 a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 361 VAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred hHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 43322 1233333 458999999999999999999999876543
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=1.2e-14 Score=139.80 Aligned_cols=318 Identities=11% Similarity=0.013 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
........|......|+++.|.+.+.++.+. .|.....+...|.+....|+++.|..++.++.+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---- 148 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---- 148 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 3445677888889999999999999887654 44445566677999999999999999999986543
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
++.. . .+....+.++...|+++.|...+++.++. .|++ ..++..++.++...|++++|.+.+.+..+..
T Consensus 149 p~~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~- 217 (409)
T TIGR00540 149 GNDN-I-LVEIARTRILLAQNELHAARHGVDKLLEM-----APRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG- 217 (409)
T ss_pred CcCc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence 2211 1 12344588999999999999999988875 2333 4678889999999999999999998887651
Q ss_pred HhcCCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 277 LNRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 277 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
..++... ........-+...+..+++.+.+.++.+... ...+.....+..++..+...|++++|.+.++++
T Consensus 218 ----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 218 ----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1122222 2222222222344444445556665554321 112235677788999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (581)
++. .|++...... ..........++.+.+++.++++++.. +++|. ...+..+|.++.+.|++++|.
T Consensus 290 l~~-------~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 290 LKK-------LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred Hhh-------CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHHHHH
Confidence 986 2333321100 112223344577888888888877652 34443 367888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (581)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (581)
++|+++.... .+|+... +..+|.++.+.|+.++|.+++++++...-
T Consensus 356 ~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 356 DAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999533321 2344443 55899999999999999999999987653
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.74 E-value=3.3e-14 Score=123.04 Aligned_cols=344 Identities=15% Similarity=0.061 Sum_probs=255.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (581)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (581)
..-|.-++...++++|+....+.+..... .......+..+..+...+|.|++++.+--..++..... .+.....
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ 83 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLL 83 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33455566777888888777765554321 12333455667778889999999888776666665543 3445667
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
.++.+++..+....++.+++.+-...+.+-....+ ..-......++..+..++.++++++.|+.++++.... .+.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~ 158 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCc
Confidence 88999999999999999999888777665221111 1223456678999999999999999999999987654 333
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (581)
.-...++..||..+....++++|.-+..++.++.......+-.......+++.++..+..+|+...|.++.+++.++.-.
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33567788999999999999999999999999987642122223344556788999999999999999999999998876
Q ss_pred hcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-----HHHHH
Q 008016 406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLV 480 (581)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~ 480 (581)
. .+.+..+..+..+|++|...|+.+.|..-|++|..++... ++.-..+.++...+.++....-..+ |+++-
T Consensus 239 ~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n 314 (518)
T KOG1941|consen 239 H--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN 314 (518)
T ss_pred h--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 5 5677788899999999999999999999999999987765 2333445567777777766544444 99999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
++++++..++ | ....+......++.+|..+|..+ +-...+.++-
T Consensus 315 ~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d-~~~~h~~ra~ 358 (518)
T KOG1941|consen 315 TRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQD-ELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHH
Confidence 9999988766 2 23345677888999999998877 5444444443
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.2e-14 Score=128.68 Aligned_cols=364 Identities=15% Similarity=0.143 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+.++..++...|+|++|+.--.+..++ .|..+..|..+|..+...|+|++|+..|.+.++..
T Consensus 38 lySnrsaa~a~~~~~~~al~da~k~~~l----------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d------- 100 (539)
T KOG0548|consen 38 LYSNRSAAYASLGSYEKALKDATKTRRL----------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD------- 100 (539)
T ss_pred hhcchHHHHHHHhhHHHHHHHHHHHHhc----------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-------
Confidence 3566777888999999999888888776 88889999999999999999999999998876653
Q ss_pred chHHHHHHHHHHHHHhc-----------------cC----HHHHHHHHHHHHHHHHH--------------------H--
Q 008016 200 PLLDAILLHMGSMYSTL-----------------EN----YEKSMLVYQRVINVLES--------------------R-- 236 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~-----------------g~----~~~A~~~~~~al~~~~~--------------------~-- 236 (581)
|.....+..++.++... ++ +-.....|...+...+. .
T Consensus 101 ~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~ 180 (539)
T KOG0548|consen 101 PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG 180 (539)
T ss_pred CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc
Confidence 33333344444433111 00 00001111111111000 0
Q ss_pred -----------------cCC------------CCH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 237 -----------------YGK------------TSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 237 -----------------~~~------------~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
..+ +.. ..+.....+|...+...++..|++.|..++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~------ 254 (539)
T KOG0548|consen 181 VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA------ 254 (539)
T ss_pred CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh------
Confidence 000 000 134456789999999999999999999999984
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
.....+++.+.+|...|.+.+.+.....+++....... +....+.++..+|..|...++++.|+.+|++++.-.+.
T Consensus 255 ---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 255 ---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred ---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 34567788999999999999999888888776543310 11125566667888999999999999999998865432
Q ss_pred h-------------------ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016 362 S-------------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (581)
Q Consensus 362 ~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (581)
. ...+ +....-...-|..++..|+|..|+..|.+++.. .|+....|.+.|
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~---pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRA 399 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYIN---PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRA 399 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC---hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHH
Confidence 0 0111 111222345688899999999999999998875 477888999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 008016 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL 502 (581)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 502 (581)
.+|.+.|++..|+.-.+.++++ +|.....|..-|.++..+.+|++|.+.|.++++.. |....+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~ 463 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAI 463 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHH
Confidence 9999999999999999999885 78889999999999999999999999999998743 5555666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008016 503 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK 547 (581)
Q Consensus 503 ~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 547 (581)
..+.++...+.... ...+..+++. ..|++..++..
T Consensus 464 ~~~~rc~~a~~~~~-~~ee~~~r~~---------~dpev~~il~d 498 (539)
T KOG0548|consen 464 DGYRRCVEAQRGDE-TPEETKRRAM---------ADPEVQAILQD 498 (539)
T ss_pred HHHHHHHHHhhcCC-CHHHHHHhhc---------cCHHHHHHHcC
Confidence 77777776543333 4444555532 35766655443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=1.3e-15 Score=152.18 Aligned_cols=253 Identities=14% Similarity=0.096 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
+++++|+.++++++++ +|....++..+|.++... +++++|...+++++++ +|...
T Consensus 275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~ 338 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP 338 (553)
T ss_pred HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence 4578999999999987 566778888888877643 3478999999999876 56667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
.++..+|.++...|++++|+..+++++++ .|++ ..++..+|.++...|++++|+..+++++++. +
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P 403 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----P 403 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C
Confidence 88889999999999999999999999987 3444 3456889999999999999999999999873 3
Q ss_pred CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI 489 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (581)
.++ .....++.++...|++++|+..+++++.. ..|.....+..+|.++...|++++|...++++..
T Consensus 404 ~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---- 469 (553)
T PRK12370 404 TRA---AAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---- 469 (553)
T ss_pred CCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----
Confidence 322 23344555677789999999999998763 2355566788899999999999999999987643
Q ss_pred HcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016 490 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 569 (581)
Q Consensus 490 ~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 569 (581)
..|........++..|...| + +|...+++.++..... +.+ ...+..+|.-.|+.+.|..+ +++.
T Consensus 470 ----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 470 ----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred ----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence 33455566778888888888 4 7777777766644321 111 12267788888998888877 6665
Q ss_pred HHH
Q 008016 570 NLR 572 (581)
Q Consensus 570 ~l~ 572 (581)
+-+
T Consensus 534 ~~~ 536 (553)
T PRK12370 534 NED 536 (553)
T ss_pred ccc
Confidence 543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=1.3e-15 Score=152.02 Aligned_cols=251 Identities=10% Similarity=-0.027 Sum_probs=191.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (581)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (581)
+++++|+.+|+++++. +|..+.++..+|.++... +++++|...+++++++. |..
T Consensus 275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~ 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN 337 (553)
T ss_pred HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence 4577999999999877 778888888999887643 34788999999887764 555
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
..++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+..+++++++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------- 401 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL-------- 401 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 5678889999999999999999999999862 334667899999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+|........++.++...|++++|+..+++++.. .+|.....+..+|.++...|++++|...+.+....
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---- 470 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---- 470 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence 3444444455666777899999999999998764 23445567888999999999999999999876443
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
.+.-......++..|...| ++|...+++.++..... ..++ ..+..+|.-.|+.+.+..+ +++.
T Consensus 471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence 2222334567888888888 48888888866654332 1121 2266778888888888776 6654
Q ss_pred H
Q 008016 443 D 443 (581)
Q Consensus 443 ~ 443 (581)
+
T Consensus 534 ~ 534 (553)
T PRK12370 534 N 534 (553)
T ss_pred c
Confidence 4
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=2.9e-15 Score=121.84 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
.....+...||.-|...|++..|...+++++++ +|....++..++.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345678889999999999999999999999998 7788899999999999999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
+|....+++|.|..++.+|++++|...|++++.. |.-.....++.|+|.|-.+.|+++.|.++|+++++
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 6777889999999999999999999999999874 55566677889999999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
.. |........++......|++..|..++++.... .+..+.++.-..++-...|+-+.|-++=.
T Consensus 168 ~d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 168 LD--------PQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hC--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 73 333456677899999999999999998886552 22445566666677778899888877766
Q ss_pred HHHHHH
Q 008016 482 EALYIR 487 (581)
Q Consensus 482 ~a~~~~ 487 (581)
+....+
T Consensus 232 qL~r~f 237 (250)
T COG3063 232 QLQRLF 237 (250)
T ss_pred HHHHhC
Confidence 655443
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=4.2e-14 Score=135.10 Aligned_cols=339 Identities=13% Similarity=0.014 Sum_probs=232.7
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
+|+....+..+|.++...|+.+.+...+.++....... ..........+..+...|++++|...++++++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---- 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDD---- 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence 36677788999999999999999988888877754321 123445566788999999999999999999886
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|....++.. +..+...|++..+.....+++.. ..+.++........+|.++...|++++|+..++++++.
T Consensus 73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3333344443 55666666655555555555443 24567778888889999999999999999999999997
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
.|+. ...+..+|.++...|++++|+.++++++..... ........+..+|.++..+|++++|+..+
T Consensus 144 -------~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 144 -------NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred -------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3333 345678999999999999999999999876421 11223446778999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 439 RICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
++++... +..+....... .+...+...|....+..+ +.+........ +.+ .....-...+.++...|+.+
T Consensus 210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDH-GLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Ccc-cchHHHHHHHHHHhcCCCHH
Confidence 9985421 11111111101 223334445554444333 22222221111 111 12222236788888899988
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 517 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 517 ~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
+|...++......+..- .......+......+.++..+|++++|.+.+.+++.+...++.|
T Consensus 282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 99999988876654410 01123345666778899999999999999999999998777654
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.7e-14 Score=133.02 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=176.8
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016 157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (581)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (581)
...+.-.++..-+..+...+.++-|+.+|..+++.+ |..-.+|...+..-...|..++-..++++++....
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-- 581 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-- 581 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--
Confidence 344555566666666666677777777776666655 33334455555555556677777777777766432
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.....|...+..+...|+...|...+.++.+. +|..-..+..-..+.....+++.|..+|.++...
T Consensus 582 ------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 582 ------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred ------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 12334555666677777777777777777765 3444555666666667777777777777777553
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (581)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (581)
......|..-+.+...+++.++|+.+++++++.+ +.+...|..+|.++..+++.+.|.+.|
T Consensus 648 ---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 648 ---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233455556666667777777777777777763 222445667777777777777777777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (581)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (581)
...+..+ |.....+..|+.+-.+.|+.-.|...++++.- .+|.....|....++-.+.|+.+.|
T Consensus 709 ~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 709 LQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHH
Confidence 7665543 34445666777777777777777777777654 3555566666666777777777777
Q ss_pred HHHHHHHHHHH
Q 008016 477 EKLVLEALYIR 487 (581)
Q Consensus 477 ~~~~~~a~~~~ 487 (581)
.....+|++-+
T Consensus 773 ~~lmakALQec 783 (913)
T KOG0495|consen 773 ELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHHhC
Confidence 77777776644
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.2e-13 Score=124.76 Aligned_cols=409 Identities=13% Similarity=0.129 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..++.....+...|+|++|+....+.+.. .|+...++..--.+....++|++|..+.+.-...
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------- 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------- 75 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------
Confidence 34666777788899999999999888876 5777778888888889999999998665542111
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL--- 275 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 275 (581)
.......+.-+.|.++.++.++|+..++-+ + +.+ ..++...|.+++++|+|++|...|+...+..
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGL-D-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHhcc-c-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 111111267888999999999999988721 1 122 3355667899999999999999997663311
Q ss_pred --------------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-------H
Q 008016 276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-------V 328 (581)
Q Consensus 276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~ 328 (581)
.+.......+....+++.+.++...|+|.+|++.+++++.++++.+..++.. .
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el 223 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL 223 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence 0011111223556788999999999999999999999999988776544322 4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHH----------
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLE---------- 397 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~---------- 397 (581)
..+...|+.++..+|+..+|...|...+.. ...|.+..+.+-+||..+-....-++ .++..++
T Consensus 224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~------~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKR------NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHh------cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 456678899999999999999999998875 34455555555555543322221111 0000000
Q ss_pred ---------------------------HHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 398 ---------------------------ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 398 ---------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
++.+.... .....|..................+.+|.+++...-+
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~------- 369 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD------- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence 00011111 1122222221111122222222245555555544433
Q ss_pred CCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG--KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
.+|.. ..+...++.+...+|+++.|++.+..........++ ...| .+...+-..+.+.++.. -|...+.+++
T Consensus 370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---~~V~aiv~l~~~~~~~~-~a~~vl~~Ai 444 (652)
T KOG2376|consen 370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---GTVGAIVALYYKIKDND-SASAVLDSAI 444 (652)
T ss_pred -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---hHHHHHHHHHHhccCCc-cHHHHHHHHH
Confidence 34443 456778899999999999999999965543322221 1223 33445566677777777 8889999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 528 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
..+...... .+.....+..++..-.+.|+-++|..++++.+...+...
T Consensus 445 ~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 445 KWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 888776443 355566677788888888999999999999988655443
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.73 E-value=5e-14 Score=134.53 Aligned_cols=338 Identities=14% Similarity=0.031 Sum_probs=230.8
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+|+.+..+..+|..+...|+.+.+...+.+...... ............+..+...|++++|...++++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---- 73 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---- 73 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 577788899999999999999999887777666542 223344456677889999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+++ ..++.. +..+...|++..+.....+++.. ..+.+|........+|.++..+|++++|+..++++++.
T Consensus 74 -P~~---~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~- 143 (355)
T cd05804 74 -PRD---LLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL- 143 (355)
T ss_pred -CCc---HHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 222 233333 55555566555555555555443 23457777888889999999999999999999999986
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
.|.....+..+|.++...|++++|+.++++++.... .++......+..++.++...|++++|+..++
T Consensus 144 -------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 144 -------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD------CSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC------CCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 234466788899999999999999999999988632 1223334456789999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016 398 ECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (581)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (581)
+++... +..+..... ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++
T Consensus 211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHH
Confidence 985431 111111111 11223334444543333332 22222211110 11 2222233467888889999999
Q ss_pred HHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 476 AEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 476 A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
|...++......+... ..............+.++...|++. +|...+..++.....+-|
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~A~~~L~~al~~a~~~gg 342 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-TALELLGPVRDDLARIGG 342 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCC
Confidence 9999998877665410 0111233455677888999999999 999999999998866544
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=3.6e-15 Score=133.70 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
......+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|...++++++.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 94 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----- 94 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 345778899999999999999999999999876 4556778899999999999999999999999986
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
.|.....+.++|.++...|++++|...+++++... ..+.....+..+|.++...|++++|...+++++.
T Consensus 95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23445678899999999999999999999998741 1222234567899999999999999999999987
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
.. |.....+..+|.++...|++++|..++++++.. .+.....+..++.++...|+.++|..+.+
T Consensus 164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 62 223456788999999999999999999999885 12334556678899999999999998877
Q ss_pred HHHH
Q 008016 482 EALY 485 (581)
Q Consensus 482 ~a~~ 485 (581)
.+..
T Consensus 228 ~~~~ 231 (234)
T TIGR02521 228 QLQK 231 (234)
T ss_pred HHHh
Confidence 6644
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.72 E-value=7.8e-14 Score=120.82 Aligned_cols=346 Identities=14% Similarity=0.091 Sum_probs=262.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
-+..+..++...++++|+....+.+....+ .......+-.+..+...+|.|+++..+--..+...... ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 456677888999999999999988876544 34555667777888889999998887665555544332 3334
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
....++.+++..+....++.+++.+-...+.+-....+ ..-......++.++...+.++++++.|+.|+.+....
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~-- 155 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN-- 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--
Confidence 55677889999999999999998887776654211111 1223556678999999999999999999999997653
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|......++..||.+|....++++|.-+..++.++.....-.+ ......+++.++..+..+|....|.++.+++.++
T Consensus 156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 23334456888999999999999999999999999877652122 1224567889999999999999999999999998
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH-----
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE----- 433 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----- 433 (581)
.-. ..+.+........+|.+|...|+.+.|..-|++|+...... .+......++...|.++....-..+
T Consensus 236 al~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cr 309 (518)
T KOG1941|consen 236 ALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCR 309 (518)
T ss_pred HHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 765 46777888888999999999999999999999999887665 3444555667777777665544444
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
|+++-++.+++..++. ....+......++.+|..+|.-++-...+..+-+..
T Consensus 310 ale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 310 ALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 9999999999887762 234566788899999999998887777776655443
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-13 Score=119.39 Aligned_cols=388 Identities=14% Similarity=0.038 Sum_probs=262.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH----------hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI----------NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG 190 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 190 (581)
+.......+....+..|...|..++..-.... ......+.....-...+.||...++-+.|+..+....
T Consensus 46 l~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p- 124 (564)
T KOG1174|consen 46 LLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVP- 124 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCC-
Confidence 44444555555566666666666655432211 0112334556677888999999999999988776532
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----------HHH---------------cCCCCHHH
Q 008016 191 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------ESR---------------YGKTSILL 244 (581)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~~~---------------~~~~~~~~ 244 (581)
...........++..+..-++..++.-.|...+.-+ +.. ..+..+..
T Consensus 125 -------~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwl 197 (564)
T KOG1174|consen 125 -------PTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWL 197 (564)
T ss_pred -------ccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHH
Confidence 112222333445555555555444444443332211 000 01111111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
.... .+.+..-.++...|...+--+-.. ..-+.....+..+|.++...|++.+|+..|+++..+
T Consensus 198 s~wi--ka~Aq~~~~~hs~a~~t~l~le~~------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-------- 261 (564)
T KOG1174|consen 198 SKWI--KALAQMFNFKHSDASQTFLMLHDN------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-------- 261 (564)
T ss_pred HHHH--HHHHHHHhcccchhhhHHHHHHhh------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------
Confidence 1111 223333344444443333221111 124556778899999999999999999999998765
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
+|....++-..|.++...|+++.-..+....+.+.+.. ..-|..-+...+...++..|+.+-+++++.
T Consensus 262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t----------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~-- 329 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT----------ASHWFVHAQLLYDEKKFERALNFVEKCIDS-- 329 (564)
T ss_pred ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc----------hhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--
Confidence 67788888888999999999998888877776663221 122234566778889999999999998876
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (581)
.+....++..-|.++...|+.++|+-.|+.|..+ .|....+|..|..+|...|++.||......++
T Consensus 330 ------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 330 ------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred ------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 2344567888899999999999999999999875 46777899999999999999999999999998
Q ss_pred HHHHHHcCCCChhHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016 485 YIREIAFGKDSLPVGEALDCLV-SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP 563 (581)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 563 (581)
... +..+.++..+| .++...-...++|..++++++.+ .|....+...+|.+....|++++++.
T Consensus 396 ~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 396 RLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHH
Confidence 866 34456666665 55554444334899999999874 47888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008016 564 LKKRLSNLRMK 574 (581)
Q Consensus 564 ~~~~a~~l~~~ 574 (581)
++++.+...++
T Consensus 460 LLe~~L~~~~D 470 (564)
T KOG1174|consen 460 LLEKHLIIFPD 470 (564)
T ss_pred HHHHHHhhccc
Confidence 99999877543
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=3.3e-15 Score=121.49 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=167.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
.....+...||.-|...|++..|..-++++++. +|....++..++.+|...|+.+.|.+.|++++.+.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---- 99 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---- 99 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----
Confidence 345677889999999999999999999999986 67888999999999999999999999999999972
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
|+. ..+++|.|..++.+|++++|...|++|+.. +..+....++.|+|.|..+.|+++.|..+|+++++
T Consensus 100 ---p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 100 ---PNN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred ---CCc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 333 556799999999999999999999999874 56677778999999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 522 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~ 522 (581)
+ +|........++......|++..|..+++...... +..+..+....++-...|+.. .+-.+
T Consensus 168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y 229 (250)
T COG3063 168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRY 229 (250)
T ss_pred h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHH
Confidence 5 45666678899999999999999999998765422 244566766777777888876 44444
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=6.7e-15 Score=131.92 Aligned_cols=206 Identities=16% Similarity=0.147 Sum_probs=169.0
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
+.......+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 94 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--- 94 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 33455677899999999999999999999999874 2334678889999999999999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
.|.....+..+|.++...|++++|...+++++.. ...+.....+..+|.++...|++++|...+.+++.
T Consensus 95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444568889999999999999999999999864 22344556788899999999999999999999988
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (581)
. .++. ...+..+|.++...|++++|..++++++... +. ....+..++.++...|+.++|..+
T Consensus 164 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 164 I-------DPQR---PESLLELAELYYLRGQYKDARAYLERYQQTY-----NQ---TAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred h-------CcCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6 2222 3356789999999999999999999988761 22 234455788899999999999988
Q ss_pred HHHHHH
Q 008016 438 LRICLD 443 (581)
Q Consensus 438 ~~~al~ 443 (581)
.+.+..
T Consensus 226 ~~~~~~ 231 (234)
T TIGR02521 226 GAQLQK 231 (234)
T ss_pred HHHHHh
Confidence 776654
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.5e-13 Score=131.59 Aligned_cols=301 Identities=14% Similarity=0.114 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHH
Q 008016 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL 243 (581)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 243 (581)
....-|......|+++.|++.+.+.... .+.|.. .+...+......|+++.|..++.++.+.. ++. .
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~ 152 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADH-----AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA-----DND-Q 152 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc-----ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-h
Confidence 3445566667789999999777764332 122322 23444666689999999999999997642 121 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
.......+.++...|++++|...+++..+. .|....++..++.+|...|++++|.+.+.+..+.. .
T Consensus 153 -~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~ 218 (398)
T PRK10747 153 -LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----V 218 (398)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----C
Confidence 222334489999999999999999998876 56667888899999999999999999998877642 1
Q ss_pred CCchHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 324 NDGRVG-----MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 324 ~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
.++... .++..+........+-+....+++..-.. .++. ..+...++..+...|+.++|...+++
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------TRHQ---VALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------HhCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112211 12222222222222222222222222111 1222 34557799999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
+++. +.++.....+ + ....++++++++..++.++ .+|+....+..+|.++...|++++|.+
T Consensus 289 ~l~~------~~~~~l~~l~---~--~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 289 GLKR------QYDERLVLLI---P--RLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HHhc------CCCHHHHHHH---h--hccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8763 2334332222 2 2245999999999988876 367777888999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
+|+++++.. |+. ..+..++.++.+.|+.+ +|..+|++++.+.
T Consensus 350 ~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~~~~~~~l~~~ 391 (398)
T PRK10747 350 AFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhh
Confidence 999998753 332 34568999999999999 9999999998754
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=1.8e-14 Score=131.71 Aligned_cols=227 Identities=14% Similarity=0.035 Sum_probs=167.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (581)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (581)
.+..+.++..+.+++.... .+++..+..++.+|.+|...|++++|+..|+++++. .|....+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~ 106 (296)
T PRK11189 39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI 106 (296)
T ss_pred chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence 4566778888888775321 234456788999999999999999999999999987 5667889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 008016 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM 375 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 375 (581)
++...|++++|...|++++++ +|....++.++|.++...|++++|+..++++++. .|+++.. ..
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~ 170 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL 170 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence 999999999999999999986 4566778999999999999999999999999986 3444421 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (581)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (581)
+ ..+....+++++|+..+.+++... .+.. + ..+.++...|+..++ ..++.+.+...... ...|.
T Consensus 171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~ 234 (296)
T PRK11189 171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER 234 (296)
T ss_pred H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence 1 223456788999999998765331 1111 1 123444556666544 23444432111000 01244
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
...+++.+|.++...|++++|+.+|+++++.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999874
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=1.3e-14 Score=132.71 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=164.3
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 008016 176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255 (581)
Q Consensus 176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 255 (581)
+..+.++..+.+++... ..+++..+..++.+|.+|...|++++|+..|++++++. |....++..+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--------PDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 44556666666655432 23344557789999999999999999999999999852 33467899999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (581)
...|++++|+..|++++++ .|....++.++|.++...|++++|+..++++++. .++++. ...+
T Consensus 109 ~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~--- 171 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPY-RALW--- 171 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHH---
Confidence 9999999999999999988 5667788999999999999999999999999986 233332 1112
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (581)
..+....+++++|+..+.+++.. ..++. . ..+.++...|+..++ ..++.+....... ....+...
T Consensus 172 ~~l~~~~~~~~~A~~~l~~~~~~------~~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~ 236 (296)
T PRK11189 172 LYLAESKLDPKQAKENLKQRYEK------LDKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLC 236 (296)
T ss_pred HHHHHccCCHHHHHHHHHHHHhh------CCccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHH
Confidence 22345678999999999876643 11111 1 134455567777554 2444443221110 00124456
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
.++.++|.++...|++++|+.+|+++++.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999984
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.8e-13 Score=129.64 Aligned_cols=303 Identities=11% Similarity=0.061 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI-IALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+..|......|++++|.+...+.-+ ..+.+..+.. .+......|+++.|..++.++.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~-----------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--- 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD-----------HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--- 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 344467777778889999999976665433 1222333344 4666699999999999999986543
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
++ .... .....+.++...|++++|...+++..+. . |....++..++.+|...|++++|+..+.+..+..
T Consensus 149 -~~-~~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 -DN-DQLP-VEITRVRIQLARNENHAARHGVDKLLEV-----A---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred -Cc-chHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 11 2222 2234588999999999999999998774 2 3335678888999999999999999998877652
Q ss_pred HHhcCCCChhhHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016 276 ELNRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (581)
Q Consensus 276 ~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (581)
..++.... ++..+........+ .+.+.+..+... ...+........++..+...|+.++|..
T Consensus 218 -----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp----~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 218 -----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS----RKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC----HHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 11222111 22222222222222 223333332211 1123445677789999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (581)
.++++++. .+ ++..... . .....++.+++++.+++.++. +|+....+..+|.++...|+
T Consensus 285 ~L~~~l~~-------~~-~~~l~~l---~--~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 285 IILDGLKR-------QY-DERLVLL---I--PRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHhc-------CC-CHHHHHH---H--hhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCC
Confidence 99998873 22 3322211 1 223458999999988887654 45666788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+++|.++|+++++. .|+.. .+..++.++...|+.++|..+|++++.+.
T Consensus 344 ~~~A~~~le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 344 WQEASLAFRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999984 34443 45689999999999999999999998765
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.6e-13 Score=126.61 Aligned_cols=372 Identities=12% Similarity=0.022 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
.-..+.+-+..+.+.+.++-|+.+|..+++. .|....++...+..-..-|..++-..+++++....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---- 580 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---- 580 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC----
Confidence 3445778888899999999999999999987 66666777777777777899999999999987765
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
|.....|...+..++..|+...|...+.++.+.. |....++..-..+......++.|..++.++....
T Consensus 581 ---pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~s- 648 (913)
T KOG0495|consen 581 ---PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSIS- 648 (913)
T ss_pred ---CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-
Confidence 3344456777888899999999999999998752 2235566666777888899999999999887641
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
....+++.-+.+...+++.++|+.+++++++.+ |.....|..+|+++.+.++.+.|.+.|...+
T Consensus 649 --------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 649 --------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred --------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 235677788888899999999999999999874 5667888999999999999999999999887
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
+.+.. . .-.|..|+.+-...|....|...++++.-. +|.....|.....+-.+.|+.+.|..
T Consensus 713 k~cP~-------~---ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 713 KKCPN-------S---IPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred ccCCC-------C---chHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 76322 1 234577888999999999999999987542 46666677777888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
+..+|++- -|.....|..-..+.-.-++-..++..+++. ..+| .++..+|.++....+.+
T Consensus 775 lmakALQe--------cp~sg~LWaEaI~le~~~~rkTks~DALkkc---------e~dp---hVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 775 LMAKALQE--------CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---------EHDP---HVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHHHHh--------CCccchhHHHHHHhccCcccchHHHHHHHhc---------cCCc---hhHHHHHHHHHHHHHHH
Confidence 99999884 3333333332222222233333333333332 2223 44667777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 517 TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 517 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
+|.+.|.+++.+ .|++.+++...-..+...|.-++-.+++.+...-.+.+++
T Consensus 835 -kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 835 -KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred -HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 777777777763 3555666666666777777777777777766655555444
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=1.1e-12 Score=122.55 Aligned_cols=389 Identities=11% Similarity=0.076 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.++..+...+..++|...+...++.++. .|++.+++...|..+..+|+-++|.......+.. +
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-------d 71 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhcc-------C
Confidence 4788888889999999999999998875 7888899999999999999999999988876553 2
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
+....+|..+|.++....+|++|+++|+.|+.+ .++...++..++....++++++-....-.+.++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----- 138 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----- 138 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence 334457889999999999999999999999986 2345778899999999999999888887777776
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.|.....|...+..+.-.|++..|....+..........+........+......+....|.+++|.+.+..--..
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 4566778899999999999999999998887766542222222234445556667778888888887766543221
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH-HHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE-RLL 438 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~ 438 (581)
...-.......+.++...+++++|...+...+.. .|+....+..+-.++..-.+.-++. .+|
T Consensus 215 ---------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 215 ---------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred ---------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111334466788999999999999999987765 3555555554444443222222222 222
Q ss_pred HHHHHHHHHh----------cCC-CCcchHH-------------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016 439 RICLDIMTKT----------VGP-DDQSISF-------------PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (581)
Q Consensus 439 ~~al~~~~~~----------~~~-~~~~~~~-------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (581)
...-+..... ... +-+.... ....+-..| .+..+ ...+++.+......+++.
T Consensus 278 ~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k-~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 278 AILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEK-VAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhH-hHHHHHHHHHHHhhcccc
Confidence 2221111000 000 0000000 001111111 11222 225555555554443332
Q ss_pred ------------Ch-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhh
Q 008016 495 ------------SL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 561 (581)
Q Consensus 495 ------------~~-~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 561 (581)
.| ....++..++.-+...|+++ .|..++..|+. ..|..++.+..-|+++...|..++|
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHH
Confidence 22 23445677899999999999 99999999986 5688889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008016 562 FPLKKRLSNLR 572 (581)
Q Consensus 562 ~~~~~~a~~l~ 572 (581)
..+++++.++.
T Consensus 425 a~~l~ea~elD 435 (700)
T KOG1156|consen 425 AAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHhcc
Confidence 99999998775
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=133.86 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=193.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
-+..|..+++.|+..+|+-.|+.++.. +|.+++++..||.+....++-..|+..+++++++. |
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P 350 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P 350 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence 356788899999999999999999877 99999999999999999999999999999998775 7
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----------HcCC----CC------------------H--HHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES-----------RYGK----TS------------------I--LLV 245 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~~------------------~--~~~ 245 (581)
....++..||..|...|.-.+|..++.+-+....+ ..+. .+ + ...
T Consensus 351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence 77788999999999999999999999887654200 0000 00 0 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
.+...||.+|...|+|++|+++|+.||.. .|.....|+.||-.+....+..+|+..|.+|+++ .
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q 494 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q 494 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence 56778999999999999999999999987 6778899999999999999999999999999997 5
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (581)
|..+++.++||..+...|.|++|.++|-.++.+.++.......+..--.+|..|-.++...++.|-+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 78889999999999999999999999999999977631111111011223344445556666665433
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.6e-15 Score=134.88 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=196.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
+..|..+.+.|+..+|.-.|+.++. .+|..+.+|..||.+....++-..|+..+++++++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 5678889999999999999999987 46788999999999999999999999999999998 7888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--CCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
..++..||..|...|.-.+|..++.+-+....+.. .... ..... ...-......+..-.++|-.+.....
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~--- 425 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP--- 425 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC---
Confidence 99999999999999999999999998776421100 0000 00000 00000000011122233333322210
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
... + ..+...||.+|...|+|++|+.+|+.|+.. .|.....|+.||-.+..-.+.++|+..|++|++
T Consensus 426 -~~~-D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 426 -TKI-D---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred -CCC-C---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 012 2 335578999999999999999999999976 577778999999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHcCCCh
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~ 516 (581)
+ .|..+++.++||..|..+|.|++|.++|-.|+.+.+...+..... .-.++..|-.++...++.+
T Consensus 493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 6 688889999999999999999999999999999987643322221 1133444445555555555
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=5.6e-12 Score=120.37 Aligned_cols=372 Identities=15% Similarity=0.139 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+...+..+...|.-..|+.+.+..+.. .+..++....+..-..|....|.+++++.+..+++.....
T Consensus 355 ~~~e~w~~~als~saag~~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~- 426 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAAGSDSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG- 426 (799)
T ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-
Confidence 34455777888888999999999988887654 1112333344444455666789999999999999886522
Q ss_pred CCCcchHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTL----ENYEKSMLVYQRVINVLESR--YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (581)
.........+..+|.+|..+ ....+=..+..++++..++. .++.+ ..+.+.++.-|..+++.+.|.++.+
T Consensus 427 -~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---p~~if~lalq~A~~R~l~sAl~~~~ 502 (799)
T KOG4162|consen 427 -QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---PLVIFYLALQYAEQRQLTSALDYAR 502 (799)
T ss_pred -hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhHHHHHHHHH
Confidence 22233445566677766533 33333333333333333332 12333 3678889999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC------------chHHHHHHHH--
Q 008016 270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND------------GRVGMAMCSL-- 335 (581)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~l-- 335 (581)
++++.. ..+.+.+|..|+.++...+++.+|+...+.+++-....++..+ .....+...+
T Consensus 503 eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 503 EALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 999982 3345788999999999999999999999999886543211100 0000000000
Q ss_pred ---------------------HHHHHHCCCHHHHHHHHHHHHHHHHhh--------------ccCCCCC--hHHHHHHHH
Q 008016 336 ---------------------AHAKCANGNAEEAVELYKKALRVIKDS--------------NYMSLDD--SIMENMRID 378 (581)
Q Consensus 336 ---------------------a~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~--~~~~~~~~~ 378 (581)
+......++..+|...+.++....... ...++++ ......+..
T Consensus 576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwll 655 (799)
T KOG4162|consen 576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLL 655 (799)
T ss_pred HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHH
Confidence 001111223334444444443332210 0001111 122334556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (581)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (581)
.+..+...+..++|..++.++-.+. +.....++..|.++..+|+.++|.+.|..++.+ +|+...
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~ 719 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVP 719 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcH
Confidence 7778888899999999988887663 667788999999999999999999999999985 566667
Q ss_pred HHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 531 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~ 531 (581)
+...+|.++...|+..-|.. ++..++++. |...++|+.+|.++...|+.+ +|.++|..++++..
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~LG~v~k~~Gd~~-~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYYLGEVFKKLGDSK-QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccchH-HHHHHHHHHHhhcc
Confidence 88899999999999888877 888888753 444489999999999999999 99999999998653
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.6e-14 Score=123.96 Aligned_cols=287 Identities=16% Similarity=0.092 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (581)
...+......++..+++..+|.+|+..+..+++. .|+.+..|.+.+..++..|++++|....++..++.+
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 3345566788889999999999999999999988 677788999999999999999999988887666542
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH--------HHHHHHcC--CCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYG--KTSILLVTSLLGMAKVLGSIGRAKK 263 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~ 263 (581)
. ........+.++...++..+|...++..- ...+.+.. ...|....+...-+.++...|++++
T Consensus 115 ~-------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 115 G-------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred C-------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 2 22245566777777777777665554211 11111111 1124455566667889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc---------hHHHHHHH
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG---------RVGMAMCS 334 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~~ 334 (581)
|...--..+++ ++....++..-|.++...++.+.|+.+|++++.+- +++. .....+..
T Consensus 188 a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-----pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 188 AQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred HHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccC-----hhhhhHHhHhhhHHHHHHHHh
Confidence 99887777766 55667788888999999999999999999999863 3332 34455667
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 414 (581)
-|.-.++.|++.+|.+.|..++.+. +.+....+.+|.+.+.+..+.|+..+|+.-.+.++.+ ++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~id------P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~sy 320 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNID------PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSY 320 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCC------ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHH
Confidence 7888999999999999999999973 2334566778999999999999999999999999987 4677
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
..++...|.++...+++++|.+.|+++++.
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999885
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-10 Score=107.91 Aligned_cols=393 Identities=12% Similarity=0.087 Sum_probs=252.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI--------- 191 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 191 (581)
.++.+.+.++.+..++|+..++- + ++....++...|.+++++|+|++|...|+.+.+-
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~ 148 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER 148 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 37899999999999999998872 2 3344557777899999999999999999876331
Q ss_pred ---------------HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHH
Q 008016 192 ---------------VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLL 249 (581)
Q Consensus 192 ---------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~ 249 (581)
....+.........+++.+.++...|+|.+|++.+++++.++++.+..++. +...+..
T Consensus 149 r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 149 RANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111111222245668899999999999999999999999988776543322 4566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH----HHHHcCCC
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKI----YTKVYGEN 324 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~ 324 (581)
.++.++..+|+..+|...|...+... ..|.|..+.+-++|..+-....-++. ++..++..... ....+ .
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s 302 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--S 302 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--H
Confidence 89999999999999999999888762 34666777777777665544433331 11111111100 00000 0
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
+...-..+.+.+.+.+..+.-+.+.+.... ..+.. .....++. ..........+.+|.+++...-+
T Consensus 303 ~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~----------lp~~~p~~~~~~ll-~~~t~~~~~~~~ka~e~L~~~~~-- 369 (652)
T KOG2376|consen 303 KKQKQAIYRNNALLALFTNKMDQVRELSAS----------LPGMSPESLFPILL-QEATKVREKKHKKAIELLLQFAD-- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh----------CCccCchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhc--
Confidence 112234455666666666665555544332 12222 22222222 22222333356667766655332
Q ss_pred HHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 404 EKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 404 ~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
.+|.. ..+...++.+...+|+++.|++.+............ ...|.++ ..+-..+...++-+-|...+
T Consensus 370 ------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl 440 (652)
T KOG2376|consen 370 ------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVL 440 (652)
T ss_pred ------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHH
Confidence 23333 557778889999999999999999855432222211 1234333 34455777888888899999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhh
Q 008016 481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 560 (581)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 560 (581)
.+++........ ..+.....+...+..-.+.|+-+ +|...+++.++. .|+...++..+...|... +.+.
T Consensus 441 ~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~lr~G~~~-ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 441 DSAIKWWRKQQT-GSIALLSLMREAAEFKLRHGNEE-EASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred HHHHHHHHHhcc-cchHHHhHHHHHhHHHHhcCchH-HHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHH
Confidence 999988765543 23455566777888888889999 999999998873 355567777777777654 5666
Q ss_pred hHHHH
Q 008016 561 KFPLK 565 (581)
Q Consensus 561 A~~~~ 565 (581)
|..+-
T Consensus 510 a~~l~ 514 (652)
T KOG2376|consen 510 AESLS 514 (652)
T ss_pred HHHHh
Confidence 66543
No 83
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.62 E-value=5.1e-11 Score=116.33 Aligned_cols=414 Identities=12% Similarity=0.047 Sum_probs=264.7
Q ss_pred hhhccccchhhhhhccchhhHHHHHHhhhhcccCCCcccccccccccccccCCc----chHHhhhhhhhhhhhhccccch
Q 008016 38 PICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAP----NDFARSKTLHDHSSNLWDGMND 113 (581)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~ 113 (581)
...+...+...+.|+..|+++.++|.++|.++++..++..+.+.++....|..+ +.|+|||.+|......--. ..
T Consensus 263 eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~-~~ 341 (894)
T COG2909 263 EEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ-RE 341 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc-cc
Confidence 357889999999999999999999999999999999999999998887777643 5899999998776532211 11
Q ss_pred HHHHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 114 FERQLLELFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 114 ~~~~~~~l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
.......++..| ..+...|..++|++..-.+ .+....+..+...+.-....++..--..+.+.+-.-.
T Consensus 342 ~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~ 410 (894)
T COG2909 342 LAARLKELHRAAAEWFAEHGLPSEAIDHALAA-----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAEL 410 (894)
T ss_pred cCCchhHHHHHHHHHHHhCCChHHHHHHHHhC-----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHH
Confidence 223334444444 6667899999999855443 1223334455555666666666554444433311100
Q ss_pred hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008016 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 271 (581)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 271 (581)
-..+|.. ....++......++.+|.....++........ .......+......|.+....|++++|+++.+.+
T Consensus 411 ---l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a 484 (894)
T COG2909 411 ---LASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA 484 (894)
T ss_pred ---HhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122332 34567778889999999999988876554310 0111233444555677888899999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH--H
Q 008016 272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA--V 349 (581)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~ 349 (581)
+..... ........++..+|.+..-.|++++|..+..++.++.+.. +.......+....+.++..+|+...| .
T Consensus 485 l~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 485 LVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred HHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 987432 2234456778889999999999999999999999987765 22233455566678889999943333 2
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc
Q 008016 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429 (581)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 429 (581)
..+...-..... ..+-+.....++..+...+.+ ++.+..-....+++..... +........+..|+.++...|
T Consensus 560 ~~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 560 KAFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcC
Confidence 223222221111 112233333333333333333 6666666666666543321 222222233468999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 430 NFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 430 ~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
++++|...+.+......+.. .+.+. +.+..........+|+..+|.....+.
T Consensus 633 dl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999888765432 22222 222333334455689999988888774
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.5e-13 Score=119.06 Aligned_cols=285 Identities=15% Similarity=0.064 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (581)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (581)
.+.-....|..++...+|.+|+..+..+++.. |..+..|.+.+..+...|+|++|....++.+++-.
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd------ 114 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD------ 114 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC------
Confidence 34445667788889999999999999998886 44577788899999999999999999988877532
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRV--------ITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------l~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (581)
.........+.++...++..+|...++.. +...+..... ..|....+...-+.++...|++++|...-
T Consensus 115 --~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 115 --GFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred --CccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 22345566677777777777776655421 1111111111 12555666677789999999999998877
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH---------HHHHHHHHH
Q 008016 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---------ENMRIDLAE 381 (581)
Q Consensus 311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~~la~ 381 (581)
-..+++ ++....++...|.++...++.+.|+..|++++.+ +|++... ...+..-|.
T Consensus 193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 766654 4566778888899999999999999999999986 4444332 333455677
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (581)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (581)
-..+.|++.+|.+.|..+|.+... +....+..|.+.|.+....|+..+|+.-.+.++.+ ++..+.++.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall 325 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL 325 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence 788999999999999999988532 23456778999999999999999999999999986 678888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 462 HLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.-|.++...++|++|.+.|+++++..
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998865
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=3.8e-11 Score=112.53 Aligned_cols=403 Identities=15% Similarity=0.085 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
+....+.-.|..+...|+-++|.++...++.. ++....++..+|.++....+|++|+.+|..++.+.
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--- 105 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--- 105 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhcc----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---
Confidence 34455677788888999999999999888764 67777899999999999999999999999998874
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
++...++..++.+..+.++++.....-.+.++.. |.....|...+..+...|++..|....+...+..
T Consensus 106 ----~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 106 ----KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ----CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566778999999999999998888777777643 4456778889999999999999999988877665
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.............+......+....|.+++|.+.+..--.. -.+........+.++...+++++|...+...
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 43222222333444555566677778877777665543221 1122333445677888888888888888777
Q ss_pred HHHHHhhccCCCCChHHHH-HHHHHH----------HHHHHc-------------------C-ChHH-------------
Q 008016 356 LRVIKDSNYMSLDDSIMEN-MRIDLA----------ELLHIV-------------------G-RGQE------------- 391 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~-~~~~la----------~~~~~~-------------------g-~~~~------------- 391 (581)
+.. .|++..... ....+| .+|... | ++.+
T Consensus 246 l~r-------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 246 LER-------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred Hhh-------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 664 222211110 001111 001000 0 0000
Q ss_pred ----------------HHHHHHHHHHHHHHhcCC-------------CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 392 ----------------GRELLEECLLITEKYKGK-------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 392 ----------------A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
-..++++.+..+...+++ ........+..++.-+...|+++.|..++..|+
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 000222222222222211 112345667788999999999999999999998
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH-HHHHHHHHcCCChHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD-CLVSIQTRLGEDDTKLLE 521 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~~A~~ 521 (581)
+ ..|.....+..-|+++...|+.++|..++.++.++. .++. .++ ..|.-..+.++.+ +|.+
T Consensus 399 d--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR--~INsKcAKYmLrAn~i~-eA~~ 460 (700)
T KOG1156|consen 399 D--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADR--AINSKCAKYMLRANEIE-EAEE 460 (700)
T ss_pred c--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhH--HHHHHHHHHHHHccccH-HHHH
Confidence 7 468888889999999999999999999999987743 3332 233 4667777777777 7776
Q ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 522 LLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 522 ~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
...+--.-.....+. ...........-|..|.++|++..|++-|..+-.+..++.
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWS 516 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 654432210000000 0112233334558899999999999988877766665543
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.58 E-value=1.1e-11 Score=121.48 Aligned_cols=396 Identities=14% Similarity=0.072 Sum_probs=278.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+..++-.+...+++..|+..|+.++.. +|.+..++..+|.+|...|.+..|+..|.++..+. |
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P 627 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P 627 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence 445888899999999999999999987 89999999999999999999999999999987654 5
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
.....-+..+.+....|+|.+|+..+...+.....- .+.....+.++..++..+...|-..+|..+++++++.+.-...
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 555566778888899999999999999888765432 1122346778888888888889999999999998887654332
Q ss_pred CCChhhHHHHHHHHHHHH---HcC--------------------CH------HHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 281 TESADLVLPLFSLGSLFI---KEG--------------------KA------VDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~---~~g--------------------~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
....+....+..+|.... ... .. --|.+++-..+... .....
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~---------~~~~~ 777 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA---------IHMYP 777 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh---------hccch
Confidence 221111122222222111 111 11 01112222222211 12456
Q ss_pred HHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 332 MCSLAHAKCA--------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 332 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
|+++|.-|.. ..+...|+.++.++++...+ . ...++.||.+ ...|++.-|..+|-+++..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-------n---~~~WnaLGVl-sg~gnva~aQHCfIks~~s- 845 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-------N---EGLWNALGVL-SGIGNVACAQHCFIKSRFS- 845 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-------c---HHHHHHHHHh-hccchhhhhhhhhhhhhhc-
Confidence 7788877765 22335789999999987433 2 2345667766 6668899998888887654
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
.|.....|.|+|.++....+++.|.+.+.++..+ .|.....+...+.+....|+.-++...+...
T Consensus 846 -------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs 910 (1238)
T KOG1127|consen 846 -------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHS 910 (1238)
T ss_pred -------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 3555678999999999999999999999988774 5777788888899999999999999988875
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhh
Q 008016 484 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL--RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK 561 (581)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 561 (581)
-+..... ...+.. ..+.+-.......|+.+ +-+...+++- .+.-..+-..+|+...++...|.....++.+++|
T Consensus 911 ~el~~~~--gka~~f-~Yw~c~te~h~~Ng~~e-~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a 986 (1238)
T KOG1127|consen 911 DELCSKE--GKAKKF-QYWLCATEIHLQNGNIE-ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA 986 (1238)
T ss_pred HHhhccc--cccchh-hHHHHHHHHHHhccchH-HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence 4443211 111221 23344455666677776 6665555432 2222223346789999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008016 562 FPLKKRLSNLRMK 574 (581)
Q Consensus 562 ~~~~~~a~~l~~~ 574 (581)
.+...+++.+-+.
T Consensus 987 ~ela~RliglLe~ 999 (1238)
T KOG1127|consen 987 LELATRLIGLLEL 999 (1238)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.57 E-value=6.2e-12 Score=123.09 Aligned_cols=375 Identities=12% Similarity=0.058 Sum_probs=247.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (581)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (581)
..+...|+..|-+++.+ ++..+.++..||..|...-+...|...|.++.++. +..+.+.-..+
T Consensus 471 rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~a 533 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASA 533 (1238)
T ss_pred hhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHH
Confidence 34577778888787776 78888999999999999889999999999987764 45556667788
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (581)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (581)
..|....+++.|....-.+-+.... ......|..+|..|...+++.+|+..++.++.. +|....++
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W 599 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW 599 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence 9999999999998874433322111 123344666899999999999999999999987 67778999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (581)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (581)
..+|.+|...|++..|.+.|.++..+ +|....+.+..+.+....|+|.+|+..+...+...... .+-..
T Consensus 600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~ 668 (1238)
T KOG1127|consen 600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQN 668 (1238)
T ss_pred HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 99999999999999999999999875 46666777788889999999999999999888765432 12222
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC------------------------Ch--------------
Q 008016 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE------------------------HP-------------- 412 (581)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------~~-------------- 412 (581)
..+.++..++..+...|=..+|..+++++++.+.-..... .|
T Consensus 669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~ 748 (1238)
T KOG1127|consen 669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK 748 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3345556666666677777777777777766543221100 00
Q ss_pred ------------------------HHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016 413 ------------------------SFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (581)
Q Consensus 413 ------------------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (581)
.....|++||.-|.. +.+...|+.++++++.+.. .....+
T Consensus 749 ~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a--------nn~~~W 820 (1238)
T KOG1127|consen 749 TGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA--------NNEGLW 820 (1238)
T ss_pred cccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh--------ccHHHH
Confidence 001123344443333 1122345555555555321 112234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 540 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~ 540 (581)
..||.+ ...|++.-|...|-+.+... |....++.++|.++....+.+ -|...+.++..+ .|.
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E-~A~~af~~~qSL--------dP~ 882 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFE-HAEPAFSSVQSL--------DPL 882 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHH-HhhHHHHhhhhc--------Cch
Confidence 444433 33455555555555544321 333345566666666666666 555555555442 356
Q ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 541 VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 541 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
....+...+.+....|+.-++..+|...-.+..
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 666666666677777777777777766444433
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1e-11 Score=107.60 Aligned_cols=384 Identities=14% Similarity=0.065 Sum_probs=242.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------HHh
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG----------IVD 193 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~ 193 (581)
.+.+++..|+|++|+..|.-+.+. +...+....+++.+++-.|.|.+|.....++.+ +.-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~----------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah 132 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK----------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc----------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 567889999999999999877642 444566788899999999999999987655321 111
Q ss_pred hcCCCcchHH----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016 194 SLKDDEPLLD----------AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263 (581)
Q Consensus 194 ~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 263 (581)
++++ ...+. +-...++.+.+..-.|.+|++.|.+.+. +.+.....-..++.+|.+..-++-
T Consensus 133 klnd-Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 133 KLND-EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhCc-HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhh
Confidence 1111 11111 1234456666777788888888887775 556667777788999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHH------------
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-----------KIYTKV------------ 320 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----------~~~~~~------------ 320 (581)
+.+.+.--+.. .|+...+.+..+....+.-+-..|+.-..... .+++..
T Consensus 204 sqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 204 SQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred HHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 88777666654 44445555555555544322222222111111 111100
Q ss_pred -cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 321 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (581)
Q Consensus 321 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (581)
+++--.....+..+|+..|.++++..+|..+.+. +.|..|. -+...|.+....|+--...+.++-|
T Consensus 276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd----------l~PttP~---EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD----------LDPTTPY---EYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred hchHHHhhChHhhhhheeeecccccHHHHHHHHhh----------cCCCChH---HHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 0000112345677888889999999998877654 2343332 2355677788888776666666655
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016 400 LLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (581)
Q Consensus 400 l~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (581)
-+.+.-. |.. .-++......+|.++.-..++++.+.++...-..+. .++ ....++++++...|++.+|+
T Consensus 343 qqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~----NdD----~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 343 QQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT----NDD----DFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc----hhhhHHHHHHHHhcChHHHH
Confidence 5544333 221 112233344566677777889998888776554432 222 34578999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557 (581)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 557 (581)
+.|-+.-. ++-.+.......|+++|.+.++++ -|.+++-+. ..+.+....+..+|+..++.++
T Consensus 414 elf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~-lAW~~~lk~---------~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 414 ELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQ-LAWDMMLKT---------NTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCch-HHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHH
Confidence 99876532 232233344667999999999999 777766542 2234455666778888888888
Q ss_pred hhhhHHHHHHHHHHHH
Q 008016 558 KEEKFPLKKRLSNLRM 573 (581)
Q Consensus 558 ~~~A~~~~~~a~~l~~ 573 (581)
+-=|.+.|...-.+.+
T Consensus 477 FyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 477 FYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHhhhHHHccCC
Confidence 8777777776555443
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.2e-11 Score=103.93 Aligned_cols=377 Identities=14% Similarity=0.086 Sum_probs=244.1
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 008016 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL 206 (581)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (581)
.+....+|..|+.+++-.+.. +..+...+-..+|.|++..|+|++|...|+-+... ++.| +..+
T Consensus 31 dfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el~ 94 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AELG 94 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--cccc
Confidence 345678899999988876532 23334566778999999999999999999876542 2222 3456
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHH----------HHHHHcC--------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVIN----------VLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
.+++.+++-.|.|.+|.....++-+ +..+... ..-.+...-...++.+.+..-.|.+|++.|
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999887766521 1111100 000122334456777777788888888888
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC--CCHH
Q 008016 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN--GNAE 346 (581)
Q Consensus 269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 346 (581)
.+++.- +|+....-..++.+|.+..-++-+.+.+.--+.. .|+...+.+..+...++. |+..
T Consensus 175 krvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 175 KRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred HHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchh
Confidence 888764 6777777788999999999999887776655543 344444444444444332 3322
Q ss_pred HH----------------HHHHHH----------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 347 EA----------------VELYKK----------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 347 ~A----------------~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
++ ..+++. +++. +++--..+..+..+|+..|..+|+..+|..+.+.
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqV------LP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-- 310 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQV------LPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-- 310 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHh------chHHHhhChHhhhhheeeecccccHHHHHHHHhh--
Confidence 22 111111 1111 1111223345667888889999999999887654
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHcCChHHHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKL 479 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 479 (581)
+ .|.+..-+..-|.+....|+--...+.++-|...+.-..+. ..-+++.....++..++-..++++.+.+
T Consensus 311 ------l---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 311 ------L---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred ------c---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 1 33344456667778888887777777766665544333211 1223444556778888888899998888
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016 480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 559 (581)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 559 (581)
+...-..+ ..++ ....+++.++...|++. +|.++|-+.- +++-.+.......||.+|...|+++
T Consensus 382 lnSi~sYF----~NdD----~Fn~N~AQAk~atgny~-eaEelf~~is-------~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 382 LNSIESYF----TNDD----DFNLNLAQAKLATGNYV-EAEELFIRIS-------GPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHh----cCcc----hhhhHHHHHHHHhcChH-HHHHHHhhhc-------ChhhhhhHHHHHHHHHHHHhcCCch
Confidence 77654433 1222 34678999999999998 8887776543 2333344556678999999999999
Q ss_pred hhHHHHHHH
Q 008016 560 EKFPLKKRL 568 (581)
Q Consensus 560 ~A~~~~~~a 568 (581)
-|.+.+-+.
T Consensus 446 lAW~~~lk~ 454 (557)
T KOG3785|consen 446 LAWDMMLKT 454 (557)
T ss_pred HHHHHHHhc
Confidence 888877543
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=2.4e-12 Score=114.78 Aligned_cols=180 Identities=14% Similarity=0.097 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
+.....++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..++++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 3457788999999999999999999999998873 4455666788999999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH--------------HHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL 379 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l 379 (581)
++++....++..+|.++... |++++|+..+++++... |++.....+ ...+
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667888999999876 88999999999998763 333222111 2367
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
|.+|...|++.+|+..+++++... ++.|....++..+|.++...|++++|..+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999998874 44577788999999999999999999998877654
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=2.9e-12 Score=114.19 Aligned_cols=181 Identities=15% Similarity=0.041 Sum_probs=148.2
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
.+.....+..+|..+...|++++|+..+++++.. .|+++....++..+|.++...|++++|+..++++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-
Confidence 3456778899999999999999999999998876 45555556678999999999999999999999999874
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH 462 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~ 462 (581)
++++....+++.+|.++... |++++|++.+++++.. .++++....+ ...
T Consensus 101 ----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (235)
T TIGR03302 101 ----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKELY 171 (235)
T ss_pred ----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666788899999876 8899999999999874 2333322222 236
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
+|..+...|++.+|+..++++++.. |++|....++..+|.++...|+++ +|..+++....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~-~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD-LAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence 7889999999999999999998865 566778899999999999999999 99988776544
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.4e-10 Score=100.11 Aligned_cols=402 Identities=14% Similarity=0.111 Sum_probs=264.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
.+.-|.--..++++..|.++|+.||.. +......+...+.+-+.......|..+++++..+. |
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv----------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------P 138 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV----------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------P 138 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------c
Confidence 444444445566666666666666654 34445556666666666666677777777666655 4
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH--------------------------HHHcCCCCHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL--------------------------ESRYGKTSILLVTSLLGMAKV 254 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~ 254 (581)
.....|+....+-...|+...|...|++-++.. ++. ---|| .+..+...+..
T Consensus 139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP-~v~~wikyarF 216 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHP-KVSNWIKYARF 216 (677)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecc-cHHHHHHHHHH
Confidence 444455555555555666666666665543320 000 01122 24556777888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HH
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY---------------TK 319 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~ 319 (581)
-...|+..-|...|++|++.... +..........|..-..+..++.|..+|+-|++.. ++
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 88899999999999999987532 33344455556666666777777777777665532 11
Q ss_pred HcCC---------------------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh-----HHH
Q 008016 320 VYGE---------------------NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS-----IME 373 (581)
Q Consensus 320 ~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~ 373 (581)
.+|. ++|....++...-.+-...|+.+.-.+.|++|+... +|... ...
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv------pp~~ekr~W~RYI 365 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV------PPASEKRYWRRYI 365 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CchhHHHHHHHHH
Confidence 1221 234444566666667777899999999999998752 22111 112
Q ss_pred HHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 374 NMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (581)
Q Consensus 374 ~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (581)
..+.+.+.. -....+.+.+.++|+.++++. +..+-..+..+...|.....+.+...|.+.+-.|+..+
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c------- 434 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC------- 434 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-------
Confidence 222232211 135678999999999999864 34456677888888999999999999999999887642
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~ 532 (581)
|.. ........+-.+.++++....+|++.++. .|....++...|.+-..+|+.+ .|...|+-|+.--
T Consensus 435 -PK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp-- 501 (677)
T KOG1915|consen 435 -PKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP-- 501 (677)
T ss_pred -Cch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc--
Confidence 211 24445566677889999999999998873 3667788999999999999999 8988888776521
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhhc
Q 008016 533 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 580 (581)
Q Consensus 533 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~ 580 (581)
.-+.|.. .+......-...|.++.|..+|++.++..+-.+-.|+
T Consensus 502 --~ldmpel--lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 502 --ALDMPEL--LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred --ccccHHH--HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 1123432 3455566777899999999999999988765554443
No 93
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1e-08 Score=93.18 Aligned_cols=420 Identities=15% Similarity=0.105 Sum_probs=269.6
Q ss_pred HHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHhhc
Q 008016 119 LELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 119 ~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
..+...|..+...| +...++..++..... .......+.+...+|..+ ....+.+.|...++++..+.+.+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i 80 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI 80 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc
Confidence 34777888888888 788888888877654 222334566677777765 45789999999999999988776
Q ss_pred CCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH------
Q 008016 196 KDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY------ 268 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------ 268 (581)
+........+...++.+|.... .+..+...+++++++.+.. ....-.....++....-..++..|.+.+
T Consensus 81 p~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLavga~s 156 (629)
T KOG2300|consen 81 PSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES 156 (629)
T ss_pred ccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhccccc
Confidence 5543444556677888888776 8889999999999875432 1122233444444444444444444332
Q ss_pred -------------------------------------------------------------------------------H
Q 008016 269 -------------------------------------------------------------------------------H 269 (581)
Q Consensus 269 -------------------------------------------------------------------------------~ 269 (581)
+
T Consensus 157 Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lk 236 (629)
T KOG2300|consen 157 ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALK 236 (629)
T ss_pred cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence 1
Q ss_pred HHHHHHHH-----------hcCCCChhhHH--------HHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHHcCCC--Cc
Q 008016 270 RVITILEL-----------NRGTESADLVL--------PLFSLGSL--FIKEGKAVDAESVFSRILKIYTKVYGEN--DG 326 (581)
Q Consensus 270 ~al~~~~~-----------~~~~~~~~~~~--------~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~ 326 (581)
+.-+.... .++.+.+.... ++..+..+ -...|-+++|.++-++++...++....+ .+
T Consensus 237 QLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sr 316 (629)
T KOG2300|consen 237 QLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSR 316 (629)
T ss_pred HHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 11110000 00111111111 11111111 1234667888888888887766552222 11
Q ss_pred h----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 327 R----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 327 ~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
- ....+-+++.+-.-.|++.+|++-...+.+.+.+.....--....+.+..-+|......|.++.|+..|..|.+.
T Consensus 317 ilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~ 396 (629)
T KOG2300|consen 317 ILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL 396 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh
Confidence 1 123345667777789999999999999999887631100011223445566777778889999999999999887
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHHcCChHH
Q 008016 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKE 475 (581)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~ 475 (581)
..+. .-.+.+-.++|..|...|+-+.-.+.++. .++.+.. ...+++..|...+.++++.|
T Consensus 397 t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~--------i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE 463 (629)
T KOG2300|consen 397 TESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL--------IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE 463 (629)
T ss_pred hhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh--------cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 5432 23456677899999998886554333322 2233211 22345566777788999999
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016 476 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 555 (581)
Q Consensus 476 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 555 (581)
|...+.+.+++.... ....-++..+..|+.+....|+.. ++.+....+++..++. ++.+-.......+-.+|...
T Consensus 464 aK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~-es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 464 AKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTV-ESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred HHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchH-HHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHh
Confidence 999999999986322 122334556777899999999999 9999999999998886 45666666777777888888
Q ss_pred CC--hhhhHHHHHH
Q 008016 556 GR--KEEKFPLKKR 567 (581)
Q Consensus 556 g~--~~~A~~~~~~ 567 (581)
|+ .++..+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
Confidence 88 5555555543
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.6e-09 Score=95.77 Aligned_cols=363 Identities=12% Similarity=0.056 Sum_probs=232.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI--------- 191 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 191 (581)
.+.-+..-++......|..+++.++.+ -|..-..++.....--..|+...|.++|++-...
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~----------lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~s 179 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTI----------LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLS 179 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHH
Confidence 445555556666666666666666555 2333333443333334445555555544433321
Q ss_pred -----------------HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016 192 -----------------VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (581)
Q Consensus 192 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (581)
++...--||.. ..+...+..-...|+..-|...|++|++.... +..........|..
T Consensus 180 fI~fElRykeieraR~IYerfV~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHH
Confidence 11111223443 23566677777889999999999999887532 23333444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHH---------------HhcC---------------------CCChhhHHHHHHHHHHHH
Q 008016 255 LGSIGRAKKAVEIYHRVITILE---------------LNRG---------------------TESADLVLPLFSLGSLFI 298 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~ 298 (581)
-..+..++.|.-.|+-|++... +.+| .++|..-.++...-.+-.
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5566666666666665554321 1111 234555667777777788
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016 299 KEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (581)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (581)
..|+.+.-.+.|++|+.......... -...+..+.+.+. .-....+.+.+.++|+.++++. +...-+++.++
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKiW 407 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKIW 407 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHHH
Confidence 88999999999999987421100000 0001222222221 1235688999999999999983 44566778888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (581)
...|....++.+...|.+.+..|+..+.+. ........+-.+.++++....+|++-++. .|..
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~---------KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~ 470 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPKD---------KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPEN 470 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCch---------hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHh
Confidence 889999999999999999999988765321 23444456677889999999999999883 6778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~ 529 (581)
..++...|.+-..+|+.+.|...|+-|+.-- ..+-|. ..+......-...|.++ +|..+|++.++.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldmpe--llwkaYIdFEi~~~E~e-kaR~LYerlL~r 536 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQP----ALDMPE--LLWKAYIDFEIEEGEFE-KARALYERLLDR 536 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhhcchHH-HHHHHHHHHHHh
Confidence 8899999999999999999999999887521 112232 22444556666788888 999999988864
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=5.9e-10 Score=107.65 Aligned_cols=314 Identities=14% Similarity=0.070 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.++-.+..+...|++++|++++++.... -.+....+...|.++..+|++++|...+..+++..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------- 68 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------- 68 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence 3566777788999999999999876543 56778889999999999999999999999988764
Q ss_pred chHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVIT 273 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 273 (581)
|+....+..+..+..... +.+.-..+|++......+ . .+-..+.-.+.....+.... .++...+.
T Consensus 69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~----s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR----S-----DAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc----c-----cchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 444445555555553222 344445555544332211 1 11111111111112222222 22222221
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--cC------CCCch-HHHHHHHHHHHHHHCCC
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGN 344 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~ 344 (581)
.. ++....++-.+|....+..-...++.......+.. +. ...|. ...+++.+|..|...|+
T Consensus 140 -------Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 140 -------KG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred -------cC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 12 23344555555654433333333333332222111 00 11222 46778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (581)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (581)
+++|+++++++++. .|+....+...|.++-..|++.+|...++.+..+. ...-.+-...+..
T Consensus 210 ~~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy 271 (517)
T PF12569_consen 210 YEKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHH
Confidence 99999999999986 34456788999999999999999999999987652 2222344556778
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcC-C-CCc---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016 425 YSRSKNFVEAERLLRICLDIMTKTVG-P-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (581)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (581)
+.+.|+.++|...+..-.. ... + .+. .........|.+|.+.|++..|++.|..+.+.+....
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred HHHCCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 8899999999887665432 110 0 011 1122334679999999999999999999999887664
No 96
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.44 E-value=2e-11 Score=110.95 Aligned_cols=228 Identities=15% Similarity=0.073 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
..+..+...|..|...|++++|...|.++.+...+. .+....+..+...+.+|... ++++|+.+++++++++...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-- 107 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence 345556667888999999999999999999988773 34456677788888887666 9999999999999998765
Q ss_pred CCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
++....+..+..+|.+|... |++++|+++|++|+++++.. ........++..+|.++...|+|++|++.|++...
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44456788999999999999 99999999999999999873 34556677888999999999999999999999876
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH--cCChHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL 479 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~ 479 (581)
..... ..........+...+.++...|++..|...+++....... -.+..-......|...+.. ...+++|+.-
T Consensus 184 ~~l~~-~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 184 KCLEN-NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp TCCCH-CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred Hhhcc-cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 53221 0112234445667788999999999999888887653110 0122333455556655543 3455666666
Q ss_pred HHHH
Q 008016 480 VLEA 483 (581)
Q Consensus 480 ~~~a 483 (581)
|...
T Consensus 260 ~d~~ 263 (282)
T PF14938_consen 260 YDSI 263 (282)
T ss_dssp HTTS
T ss_pred Hccc
Confidence 5544
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=1.1e-08 Score=96.13 Aligned_cols=348 Identities=12% Similarity=0.040 Sum_probs=221.3
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (581)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (581)
.|+..+-+..|..+....+.. .........|..+|..|...|+.+.|...|+++.... -+.-.+.+.+|...|..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~-ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPK-KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEM 434 (835)
T ss_pred cCChHHHHHHHHHHHHccCcc-cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHH
Confidence 445555666666655443211 1122344568899999999999999999999998752 12234678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 255 LGSIGRAKKAVEIYHRVITILEL----NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
-....+++.|+.+.++|...-.. .+.+..|.. ..+|...+......|-++.....|++.+++.
T Consensus 435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr------- 507 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR------- 507 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-------
Confidence 99999999999999988754221 112222322 3455566777777888888888888888763
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
........|.|..+....-++++.+.|++.+.+++ .|....+...|......-..--+.+.|..+|++|++.+
T Consensus 508 -iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C- 580 (835)
T KOG2047|consen 508 -IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC- 580 (835)
T ss_pred -cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 22345556778888888889999999999998843 23333334443333333333446899999999999854
Q ss_pred HhcCCCChHHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-----cCChHHHHH
Q 008016 405 KYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-----LNRDKEAEK 478 (581)
Q Consensus 405 ~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~ 478 (581)
.|..+. .+...|.+-..-|-...|+..|++|-.. -++... ..+=++|.. -| ...-..
T Consensus 581 ------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~---l~myni~I~kaae~yG-v~~TR~ 643 (835)
T KOG2047|consen 581 ------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQR---LDMYNIYIKKAAEIYG-VPRTRE 643 (835)
T ss_pred ------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHH---HHHHHHHHHHHHHHhC-CcccHH
Confidence 244333 4445566666678888888888886542 222211 112222221 12 234466
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 008016 479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 558 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 558 (581)
.|+++++.. |+ ..........+..-.+.|..+ .|...|.-+-++. .|. .....+...-..-.+-|+
T Consensus 644 iYekaIe~L-----p~-~~~r~mclrFAdlEtklGEid-RARaIya~~sq~~----dPr--~~~~fW~twk~FEvrHGn- 709 (835)
T KOG2047|consen 644 IYEKAIESL-----PD-SKAREMCLRFADLETKLGEID-RARAIYAHGSQIC----DPR--VTTEFWDTWKEFEVRHGN- 709 (835)
T ss_pred HHHHHHHhC-----Ch-HHHHHHHHHHHHHhhhhhhHH-HHHHHHHhhhhcC----CCc--CChHHHHHHHHHHHhcCC-
Confidence 788888764 22 234455667888889999998 8887777665543 221 222334444455667777
Q ss_pred hhhHHHHHHHHHHHHHH
Q 008016 559 EEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 559 ~~A~~~~~~a~~l~~~~ 575 (581)
.+.+++++++...-
T Consensus 710 ---edT~keMLRikRsv 723 (835)
T KOG2047|consen 710 ---EDTYKEMLRIKRSV 723 (835)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 45667777776543
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.2e-09 Score=105.50 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (581)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (581)
..+++.....++...|++++|+..++...... .+...++-..|.++...|++++|...|...++..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN------- 68 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN------- 68 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence 34566677788899999999999998754332 4555677889999999999999999999998852
Q ss_pred CHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRIL 314 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al 314 (581)
|+....+..+..+..... +.+.-..+|++....+.. ...|. .+...+..-.++.. +..++...+
T Consensus 69 -Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---s~~~~------rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 69 -PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---SDAPR------RLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred -CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---ccchh------HhhcccCCHHHHHHHHHHHHHHHH
Confidence 333555556666553332 344555555554433211 01111 11111111112222 222333332
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-------CCCChHHHHHHHHHHHHHHHcC
Q 008016 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVG 387 (581)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g 387 (581)
. .. +.....++-.+|....+..-...++.......+..... ...+.....+++.+|..|...|
T Consensus 139 ~-------Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 139 R-------KG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred h-------cC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 2 22 23444555555654433333333333333322221111 1223445667789999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (581)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (581)
++++|+++.+++|.. .|.....+...|.++...|++.+|.+.++.+..+ +......-...+..+
T Consensus 209 ~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYL 272 (517)
T ss_pred CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHH
Confidence 999999999999986 4667789999999999999999999999998774 233333445667888
Q ss_pred HHcCChHHHHHHHHHHHHHHHHHcCCCChhH---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPV---GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
.+.|+.++|.+.+........ -+..+... .......|.+|.+.|++. .|+..|..+.+++.....
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~-~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYG-LALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhc
Confidence 899999999988776533110 00011111 122345799999999999 999999999888777643
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=2.3e-09 Score=91.14 Aligned_cols=230 Identities=17% Similarity=0.136 Sum_probs=166.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (581)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (581)
...+++..+|.+|++++..-.+. .|.....+..+|.||+...++..|...|+++-.. .|....
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-------~P~~~q 79 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-------HPELEQ 79 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ChHHHH
Confidence 34456777889999888776554 7777788999999999999999999999987544 377766
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (581)
.-...+..+++.+.+..|+.......+ ++.....++..-+.+.+..+++..+..+.++. .+ .
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---e 141 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---E 141 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---C
Confidence 666778888899999999887765432 22334455556677777888888877665542 11 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
..+....+.|.+.++.|+++.|.+-|+.+++. ++-.|. .-++++.++++.|+++.|+++..+.++..-+...
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 34667888999999999999999999999986 233333 3467899999999999999999988876433200
Q ss_pred --------CCCCC-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 365 --------MSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 365 --------~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
.++|. ..+..+++..+.++.+.|+++.|.+.+.
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 01111 1123344556778888899988877654
No 100
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.41 E-value=3.8e-11 Score=109.09 Aligned_cols=228 Identities=15% Similarity=0.081 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
..+..+...|..|...|++++|.+.|.++.+...+. .+....+..+...+.+|... ++++|+.++++++.++...
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-- 107 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-- 107 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence 345567777889999999999999999999988774 44456777888888888776 9999999999999998863
Q ss_pred CCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
......+.++..+|.+|... |++++|+++|++|+++++.. ........++..+|.++...|+|++|++.|++...
T Consensus 108 --G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 108 --GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp --T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55677788999999999999 99999999999999999875 23445567888999999999999999999999877
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~ 523 (581)
....... ........+...+.++...|+...|...+++...... +-.+..-...+..|..++.. |+.+ .|
T Consensus 184 ~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~-~D~e-----~f 253 (282)
T PF14938_consen 184 KCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEE-GDVE-----AF 253 (282)
T ss_dssp TCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHT-T-CC-----CH
T ss_pred Hhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHh-CCHH-----HH
Confidence 4322100 1122334556778889999999999998888755321 11122333455556665543 3333 34
Q ss_pred HHHHHHHH
Q 008016 524 KRVLRIQE 531 (581)
Q Consensus 524 ~~a~~~~~ 531 (581)
..++.-+.
T Consensus 254 ~~av~~~d 261 (282)
T PF14938_consen 254 TEAVAEYD 261 (282)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHHc
Confidence 45554443
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=1.7e-08 Score=94.98 Aligned_cols=389 Identities=13% Similarity=0.072 Sum_probs=228.7
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (581)
..|-++-++..|+.-|+. .|.. .......+...+++++|.+.+...+..-.-.+...+.....|..+
T Consensus 150 ~~~lPets~rvyrRYLk~----------~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKV----------APEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hCCChHHHHHHHHHHHhc----------CHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 344455555555555554 2222 222233455667777777777665443322222223333344444
Q ss_pred HHHHHhccCHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC------
Q 008016 210 GSMYSTLENYEKSM---LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG------ 280 (581)
Q Consensus 210 ~~~~~~~g~~~~A~---~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 280 (581)
..+..+.-+.-..+ ...+..+. .-.......+..||..|...|.+++|...|++++...-....
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~-------rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIR-------RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD 289 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcc-------cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence 44443332222111 12222222 223345677888888888888888888888777653211100
Q ss_pred ---------------------CC--------------------------------ChhhHHHHHHHHHHHHHcCCHHHHH
Q 008016 281 ---------------------TE--------------------------------SADLVLPLFSLGSLFIKEGKAVDAE 307 (581)
Q Consensus 281 ---------------------~~--------------------------------~~~~~~~~~~la~~~~~~g~~~~A~ 307 (581)
.+ +|.....+ +-.+-...|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHH
Confidence 00 01111111 112222345666666
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (581)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (581)
..|.+|+....-.. -.......+..+|..|...|+.+.|...|+++... .-+....++.+|.+.|..-....
T Consensus 368 ~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred HHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhh
Confidence 66776665421110 12234566888999999999999999999999875 22344556788889999999999
Q ss_pred ChHHHHHHHHHHHHHHHH----hcCCCChHH------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016 388 RGQEGRELLEECLLITEK----YKGKEHPSF------VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (581)
Q Consensus 388 ~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (581)
+++.|.+++++|...-.. .+.+.+|.. ..+|...+++....|-++.-...|++.+++.. .+.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------aTP 511 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------ATP 511 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCH
Confidence 999999999988754221 122233322 34556667777778888888888888888632 223
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH---HHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL---VSIQTRLGEDDTKLLELLKRVLRIQEREF 534 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~~~A~~~~~~a~~~~~~~~ 534 (581)
....+.|..+....-++++.+.|++.+.++ ..|.+.+.++.. .......-+.+ .|..+|+++++.
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~----- 579 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDG----- 579 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-----
Confidence 455677888888888899999999888766 234444444332 22222222345 888888888873
Q ss_pred CCCCHHHHHHHH-HHHHHHHHcCChhhhHHHHHHHHH
Q 008016 535 GSESEEVMLTLK-KVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 535 ~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
.+|....+++ ..+..-.+-|--..|+..|++|..
T Consensus 580 --Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 580 --CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred --CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3355554443 345555666888888888888653
No 102
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=5.4e-10 Score=101.86 Aligned_cols=219 Identities=13% Similarity=0.032 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 280 (581)
...++..+-.++...+++++|+..+.+++.+ .|....++...+.++...| ++++++..+.+++..
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------ 101 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------ 101 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence 3344444445566778999999999999986 3555788999999999998 689999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|....+++..+.++...|+. ++++.++.++++. +|....++...+.++...|++++|++++.++++.
T Consensus 102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566677899999999888874 6778888888875 6778899999999999999999999999999987
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR---- 427 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---- 427 (581)
. +.+ ..+++..+.++... |.+ ++++.+..+++.. .|....+++.++.++..
T Consensus 172 d-------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 172 D-------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred C-------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcc
Confidence 2 222 44667777777665 333 4677777777766 35556688888888877
Q ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 008016 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470 (581)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 470 (581)
.++..+|.+.+.+++. ..+....++..|+.+|...
T Consensus 234 l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 234 LVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 3556778888877665 2455566788888888763
No 103
>PLN02789 farnesyltranstransferase
Probab=99.39 E-value=9.7e-10 Score=100.20 Aligned_cols=210 Identities=13% Similarity=-0.015 Sum_probs=163.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
.++...+++++|+..+.+++++ +|....++...+.++...| ++++++..+.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 3344577889999999999988 6777889999999999998 689999999999875 5666778
Q ss_pred HHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016 332 MCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 332 ~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
++..+.++...|+. ++++.+++++++.. + ....++...+.++...|++++|++++.++++.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d-------p---kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~------- 171 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLD-------A---KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE------- 171 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhC-------c---ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------
Confidence 99999999888874 67888998988762 2 22557789999999999999999999999886
Q ss_pred CChHHHHHHHHHHHHHHHc---cCH----HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEK 478 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 478 (581)
++....+++..+.+.... |.+ ++++.+..+++.+ .|....++..++.++.. .++..+|..
T Consensus 172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 244456788888777665 333 4677777788774 46666788888888887 355667888
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc
Q 008016 479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 512 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 512 (581)
.+.+++. ..+....++..|+.+|...
T Consensus 243 ~~~~~~~--------~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 243 VCLEVLS--------KDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence 8877655 2355557888899999753
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=4.8e-08 Score=87.03 Aligned_cols=303 Identities=18% Similarity=0.133 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
.+.....|..-+..|+|.+|.....+.-+. .+.....+..-+.+-..+||++.+-.++.++.+..
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 333555666667889999999988875442 44445556666778888999999999998876642
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
+++.. .+....+.+...+|+++.|..-..+++... |....++.....+|...|++.+...+..+.-+..
T Consensus 149 ~~~~l-~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-- 217 (400)
T COG3071 149 GDDTL-AVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-- 217 (400)
T ss_pred CCchH-HHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--
Confidence 22333 345778889999999999999999888752 3335566777899999999999988877654431
Q ss_pred hcCCCChhhHHHHHHHHH--HHHHcCCHHHHHH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGS--LFIKEGKAVDAES---VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (581)
. -++++... +-+.+. ++...++-+.+.. +.+..-.. . .++|.. ...++.-+...|++++|.+..
T Consensus 218 ~--l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~---l--r~~p~l---~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 218 L--LSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK---L--RNDPEL---VVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred C--CChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHH---h--hcChhH---HHHHHHHHHHcCChHHHHHHH
Confidence 0 11222222 111111 1222222222222 22211111 1 223433 344677788999999999999
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHH
Q 008016 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432 (581)
Q Consensus 353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 432 (581)
+++++.. -|+. .. .+. -...-++...=++..++.++. +|+....+..||.++.+.+.+.
T Consensus 287 ~~~Lk~~-------~D~~-L~----~~~-~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 287 EDALKRQ-------WDPR-LC----RLI-PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHhc-------cChh-HH----HHH-hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHH
Confidence 9998862 2222 11 111 123456666666666665554 3444478889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|..+|+.+++. ......+..+|.++.+.|+..+|.+.+++++.+.
T Consensus 346 kA~~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 346 KASEALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999998873 2223567889999999999999999999998654
No 105
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=1.3e-08 Score=90.57 Aligned_cols=298 Identities=15% Similarity=0.105 Sum_probs=202.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (581)
.-|..-+..|+|.+|+....+..+.. +.|.. .+..-+.+-..+|+++.+-.++.++-+.. + .....
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~-----e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae~~------~-~~~l~ 154 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHG-----EQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAELA------G-DDTLA 154 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcC-----cchHH--HHHHHHHHHHhcccHHHHHHHHHHHhccC------C-CchHH
Confidence 33445566899999999988854432 22332 45556778889999999999999887641 1 12355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
.....+.+....|+++.|..-..++++. .|....++.....+|...|++.+...++.+.-+.. --+.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-----~l~~ 221 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-----LLSD 221 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-----CCCh
Confidence 6778899999999999999999998887 55567778888999999999999988887765431 1111
Q ss_pred hHHHHHHHHHHH--HHHCCCHHHHHH---HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHA--KCANGNAEEAVE---LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 327 ~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
....-+-+.+.. +.+.++-..+.. ..+..-.. . ..++. +...++.-+..+|+.++|.++.+++++
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~------l-r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK------L-RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH------h-hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 222222222211 222222222222 22221111 1 11222 225678888999999999999999887
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
.. .++. +..+.. ...-+++..=++..++.+. .+|+....+..||..+.+.+.|.+|..+++
T Consensus 292 ~~------~D~~----L~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 292 RQ------WDPR----LCRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hc------cChh----HHHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 52 2222 111111 2345677776777777666 355556788999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 482 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
.+++.. + ....+..+|.++.+.|+.. +|.+..++++.+.
T Consensus 353 aAl~~~-----~----s~~~~~~la~~~~~~g~~~-~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AALKLR-----P----SASDYAELADALDQLGEPE-EAEQVRREALLLT 391 (400)
T ss_pred HHHhcC-----C----ChhhHHHHHHHHHHcCChH-HHHHHHHHHHHHh
Confidence 887743 2 2256889999999999999 9999999998554
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=5e-08 Score=94.44 Aligned_cols=366 Identities=13% Similarity=0.108 Sum_probs=217.7
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH------HHHHhhcCCCcch
Q 008016 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM------SGIVDSLKDDEPL 201 (581)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~~~ 201 (581)
|...|+.+.|....+-. ..-.++.+++..+....+.+-|.-.+-.+ ..+.+...++...
T Consensus 738 yvtiG~MD~AfksI~~I---------------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI---------------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred EEEeccHHHHHHHHHHH---------------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 45678888887644322 12346777777777777777666554221 1111111111111
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
-...+.+....|..++|..+|++.-. +-.|-..|...|.+++|.+..+. .
T Consensus 803 ----eakvAvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~ 852 (1416)
T KOG3617|consen 803 ----EAKVAVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------K 852 (1416)
T ss_pred ----hhHHHHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------c
Confidence 12345566788999999999988754 22345678889999988776542 2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHcCCCCch---------HHHHHHHHHHHHHHCCCHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----IYTKVYGENDGR---------VGMAMCSLAHAKCANGNAEEA 348 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A 348 (581)
+....-.+|++.+.-+...++.+.|+++|+++-. +.+-. .++.+. ....|...|......|+.+.|
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 3445567889999999999999999999998632 11111 111110 113355567777788888888
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (581)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (581)
+.+|..|-+. +.+.++.+-+|+.++|-.+.++.- ...+.+.||..|...
T Consensus 932 l~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 932 LSFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhh
Confidence 8888876554 344556666777777766555421 123566788888888
Q ss_pred cCHHHHHHHHHHHHHH------HHHhcCCCCcch------HHHHHHHHHHHHHcC-ChHHHHHHHHHH------H-----
Q 008016 429 KNFVEAERLLRICLDI------MTKTVGPDDQSI------SFPMLHLGITLYHLN-RDKEAEKLVLEA------L----- 484 (581)
Q Consensus 429 g~~~~A~~~~~~al~~------~~~~~~~~~~~~------~~~~~~la~~~~~~g-~~~~A~~~~~~a------~----- 484 (581)
|+..+|+.+|.+|... +++..-.+.... ..-....+..|...| +...|..+|.+| +
T Consensus 981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence 8888888887765443 222100000000 000112244444444 555565555432 2
Q ss_pred -------HHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH------HHHHHh-----------cC-----
Q 008016 485 -------YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL------RIQERE-----------FG----- 535 (581)
Q Consensus 485 -------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~------~~~~~~-----------~~----- 535 (581)
++..+-+.++ ..+..+...+..+....+++ +|.+++-.+. ++.... ..
T Consensus 1061 tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred hcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence 2211111111 22356788888998888998 8888765543 332211 00
Q ss_pred -CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 536 -SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 536 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
++......++..+|.+..++|.|..|-+-|.+|=..-.
T Consensus 1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence 11234567889999999999999999998887754433
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=6.5e-10 Score=111.65 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=131.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016 299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (581)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (581)
..|....+...+-+++...+. .+....++.+||.+....|++++|..+++.+++. .|++ ..+..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------~Pd~---~~a~~~ 125 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-------FPDS---SEAFIL 125 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------CCCc---HHHHHH
Confidence 344444555555555555433 3556788999999999999999999999999987 3444 456688
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (581)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (581)
++.++.+.+++++|+..+++++.. .|+....+..+|.++.+.|++++|+.+|++++. .+|+...
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~ 189 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFEN 189 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHH
Confidence 999999999999999999998876 466778899999999999999999999999987 3567778
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
++..+|.++...|+.++|...|+++++..
T Consensus 190 ~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 190 GYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999865
No 108
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.26 E-value=7.4e-10 Score=113.05 Aligned_cols=361 Identities=15% Similarity=0.135 Sum_probs=273.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
++......+++.+|...-++++++.+...+.+.|+....+..++..++.....++|+.+-.+.+.+.....+..+|..+.
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 36667788999999999999999999999999999999999999888888899999999999998887766666666554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH---CCCHHH------------------
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNAEE------------------ 347 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~------------------ 347 (581)
.+.+...+-...| +-+.+.+..+++...+..+.++...+.+ ..+...+.. ......
T Consensus 751 ~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~ 827 (1236)
T KOG1839|consen 751 TYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAA 827 (1236)
T ss_pred hhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhcc
Confidence 4433333322223 6777778888777777666655544433 112111111 000000
Q ss_pred ----------------------------------H--HHHHHHHH--------------------HHHHhhccCCC----
Q 008016 348 ----------------------------------A--VELYKKAL--------------------RVIKDSNYMSL---- 367 (581)
Q Consensus 348 ----------------------------------A--~~~~~~al--------------------~~~~~~~~~~~---- 367 (581)
+ .....++. ....+......
T Consensus 828 g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~k 907 (1236)
T KOG1839|consen 828 GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPK 907 (1236)
T ss_pred CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCC
Confidence 0 00000000 00000000000
Q ss_pred -----C------------Ch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016 368 -----D------------DS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (581)
Q Consensus 368 -----~------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (581)
+ .+ ....-....+......|.+.+|.+ ..+++......++..|+.....+..|+.++...
T Consensus 908 s~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~ 986 (1236)
T KOG1839|consen 908 SEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL 986 (1236)
T ss_pred CCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh
Confidence 0 00 001111234445555677888888 888888888888889999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 508 (581)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 508 (581)
|++++|+..-.++.-+.+...+.+++.....+.+++......++...|...+.++..+..-.+|++||..+....++..+
T Consensus 987 ~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 987 GDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred cchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 509 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 509 ~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
+...++.+ .|+.+++.|.....+.+++..-.+...+..+++.....|++..|....+....+..+
T Consensus 1067 ~~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1067 LLGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred HhhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 99999999 999999999999999999888888999999999999999999999998888877654
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=1e-09 Score=110.18 Aligned_cols=171 Identities=11% Similarity=0.022 Sum_probs=144.5
Q ss_pred HHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 117 QLLELFNEVK-SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 117 ~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.-+.++.++. .....|....+...+-+++...+. .+..+.++..||.+....|.+++|..+++.+.+..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--- 116 (694)
T PRK15179 47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--- 116 (694)
T ss_pred HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---
Confidence 3344555553 345666666666666666666555 67779999999999999999999999999998876
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
|+...+...++.++.+.+++++|...+++++.. .|+....++.+|.++...|++++|+..|++++..
T Consensus 117 ----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~- 183 (694)
T PRK15179 117 ----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ- 183 (694)
T ss_pred ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-
Confidence 777788899999999999999999999999985 3455788999999999999999999999999873
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+|+...++..+|.++...|+.++|...|+++++..
T Consensus 184 -------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 56678899999999999999999999999999874
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=2.8e-09 Score=90.60 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=118.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (581)
-+..|+..|+++......++... +.. -+...++.++++..+++++.. .|.....
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~ 75 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD------PLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSEQ 75 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC------ccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence 35568889998887554422110 000 111366778888889888875 3445778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHHcCCC
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~ 324 (581)
|..+|.+|...|++++|+..|++++.+ .|+...++..+|.++ ...|+ +++|...++++++.
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------- 139 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------- 139 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence 999999999999999999999999998 566788899999974 67787 59999999999986
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|....++.++|..+...|++++|+.+++++++.
T Consensus 140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667789999999999999999999999999997
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.23 E-value=6.2e-11 Score=84.42 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 495 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 495 ~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
||+++.++.++|.+|...|+++ +|+++|++++++ .+..++.++..+.++.++|.++..+|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6888999999999999999999 999999999999 67778888889999999999999999999999999999999875
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.23 E-value=8e-11 Score=83.87 Aligned_cols=77 Identities=30% Similarity=0.352 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (581)
||..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++...|++++|++++++++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5788899999999999999999999999999999 6666777888899999999999999999999999999999875
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.7e-07 Score=87.43 Aligned_cols=252 Identities=14% Similarity=0.119 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHH----HHHHhhcCCCcchH---------HHHHHHHHHHHHhccCHHHHHHH
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMM----SGIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSMLV 225 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~ 225 (581)
.....++++.+.-+...+|.+.|+++|+++ .++.+.+.++.+.+ ...|..-|......|+.+.|+.+
T Consensus 855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 334567788888888889999999998873 22332222222221 12345566777778888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Q 008016 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD 305 (581)
Q Consensus 226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 305 (581)
|..|-+. +.+..+.+-+|+.++|-...++.- ...+.+.||..|...|++.+
T Consensus 935 Y~~A~D~----------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 935 YSSAKDY----------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHHhhhh----------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHH
Confidence 8776543 333344444555555444333211 12344556666666666666
Q ss_pred HHHHHHHHHHH------HHHHc------------CCCC-chHHHHHHH-------HHHHHHHCCCHHHHHHHHHH-----
Q 008016 306 AESVFSRILKI------YTKVY------------GEND-GRVGMAMCS-------LAHAKCANGNAEEAVELYKK----- 354 (581)
Q Consensus 306 A~~~~~~al~~------~~~~~------------~~~~-~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~----- 354 (581)
|+.+|.+|... +++.- ++.+ ...+..|-. -..+|.+.|.+.+|+++.-+
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 66666554322 21110 0000 000011111 11234455555555554322
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------cC------CCC
Q 008016 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KG------KEH 411 (581)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~------~~~ 411 (581)
++++..+....+.| ...+..-+..+....+|++|..++- .|+.++... .. .+.
T Consensus 1066 aL~lIa~DLd~~sD----p~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSD----PKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HHHHHHHhcCCCCC----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 34443332112222 3344667888888899999988764 444444221 00 111
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.....++..+|.+..++|.|..|-+-|.+|-+
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 23446788899999999999999888877644
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.20 E-value=6.8e-10 Score=89.23 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (581)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (581)
..++++++++ +|.. +..+|.++...|++++|...|++++.. +|....++..+|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 3567777776 3443 557899999999999999999999875 56778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
+++|+..|++++.. .|++ ...+.++|.++...|++++|+..|++++.+.
T Consensus 74 ~~~A~~~y~~Al~l-------~p~~---~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML-------DASH---PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc-------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999986 3333 4466899999999999999999999999873
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.18 E-value=6.9e-10 Score=89.21 Aligned_cols=125 Identities=13% Similarity=0.054 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhcc
Q 008016 138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217 (581)
Q Consensus 138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (581)
..+++++++. .|.. +..+|.++...|++++|...++.++... |....++..+|.++...|
T Consensus 13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g 72 (144)
T PRK15359 13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK 72 (144)
T ss_pred HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence 3566777765 5553 5578999999999999999999987653 666778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 008016 218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297 (581)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 297 (581)
++++|+..|++++.+ .|....++.++|.++...|++++|+..|++++.+ .|.....+.+.+.+.
T Consensus 73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ 136 (144)
T ss_pred hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence 999999999999985 2345788999999999999999999999999998 445555666666554
Q ss_pred H
Q 008016 298 I 298 (581)
Q Consensus 298 ~ 298 (581)
.
T Consensus 137 ~ 137 (144)
T PRK15359 137 I 137 (144)
T ss_pred H
Confidence 3
No 116
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.15 E-value=1.9e-08 Score=103.06 Aligned_cols=370 Identities=16% Similarity=0.133 Sum_probs=263.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (581)
++......|++.+|...-+.+.++.+. ++.+.|+....+..++..++....+.+|+.+-.+.+.+.-...+..++..+.
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 355666778888887777777665543 4667888888888888777777888999999999998887776666665443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---cCCH--------------------
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK---EGKA-------------------- 303 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~-------------------- 303 (581)
.+.+....-...| +-+.+....+++-..+..+.++...+.+ ..+...+.. ....
T Consensus 751 ~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~ 827 (1236)
T KOG1839|consen 751 TYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAA 827 (1236)
T ss_pred hhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhcc
Confidence 3322222221122 4555555555555444444333332222 111111111 0000
Q ss_pred ----------------------------------HHHHHHHHHHHH--------------------HHHHH--cCCC---
Q 008016 304 ----------------------------------VDAESVFSRILK--------------------IYTKV--YGEN--- 324 (581)
Q Consensus 304 ----------------------------------~~A~~~~~~al~--------------------~~~~~--~~~~--- 324 (581)
........++.. ...+. +..+
T Consensus 828 g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~k 907 (1236)
T KOG1839|consen 828 GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPK 907 (1236)
T ss_pred CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCC
Confidence 000000111000 00000 0000
Q ss_pred ------------------Cc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 008016 325 ------------------DG--RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384 (581)
Q Consensus 325 ------------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (581)
.| ..+.-....+......|.+.+|.+ .-+++...... .+.-++.....+..++.++.
T Consensus 908 s~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~ 984 (1236)
T KOG1839|consen 908 SEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSN 984 (1236)
T ss_pred CCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHh
Confidence 01 011222334555566777787877 66666666543 45557778889999999999
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
..|+.++|+..-.++.-+.++..|.+++.....+.+++......++...|...+.++..+..-..++++|..+.+..+++
T Consensus 985 ~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle 1064 (1236)
T KOG1839|consen 985 RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLE 1064 (1236)
T ss_pred hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888889999999989999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 008016 465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 544 (581)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 544 (581)
.++...++++.|+.+.+.|....+...|+.+..++..+..+++.+...+++. .|....+....++...++++++.....
T Consensus 1065 ~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1065 LLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999988765444
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=5.2e-09 Score=88.02 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=136.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.|++..+ ..++..+...|+-+.+..+..+.... ++....++..+|......|++.+|+..++++...
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 6666677 88899999999999888887774332 3444455666999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.|....++..+|.+|.+.|++++|..-|.+++++ .+....+.+++|..|.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 2345788999999999999999999999999998 3444678899999999999999999999988753
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
.+....+..+++.+...+|++++|.....+
T Consensus 198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 233456778999999999999999887654
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.14 E-value=1.6e-08 Score=85.94 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=114.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (581)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (581)
-+..|...|+++......++.. ++.. -+...++.++++..+++++.. .|++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~-------~P~~--- 72 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA-------NPQN--- 72 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH-------CCCC---
Confidence 3567888999887644432111 1110 111266778888888888876 3444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHccC--HHHHHHHHHHHHHHHHHhc
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKN--FVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~--~~~A~~~~~~al~~~~~~~ 449 (581)
...|..+|.+|...|++++|+..|++++.+. |+...++..+|.+ +...|+ +++|...++++++.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~----- 139 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL----- 139 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----
Confidence 4567899999999999999999999999873 4556678889986 467777 59999999999984
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|....++..+|..+...|++++|+.+++++++..
T Consensus 140 ---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 140 ---DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57777899999999999999999999999998864
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=101.19 Aligned_cols=227 Identities=16% Similarity=0.144 Sum_probs=169.8
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
|........++..+...|-..+|+..+++. ..+.....+|...|+..+|.....+-++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le------ 452 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE------ 452 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc------
Confidence 334445677889999999999998888764 3355667888899999999888776554
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.+..+..|..+|.+... -.+|+++.++.+.. .+.+...+|......++|+++.+.++..+++
T Consensus 453 ---k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~- 514 (777)
T KOG1128|consen 453 ---KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI- 514 (777)
T ss_pred ---CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc-
Confidence 12234455555555544 44555555543221 2335556666667789999999999999887
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
.+....+|+.+|.+..+.+++..|.+.|..++.. .|+...++++++..|...|+-.+|...++
T Consensus 515 ---------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 515 ---------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred ---------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 3444667899999999999999999999998876 46778899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (581)
++++. +......+.|...+..+.|.+++|++.+.+.+.+.....
T Consensus 578 EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 578 EALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99883 233344566777788899999999999999988776543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=1.8e-09 Score=103.06 Aligned_cols=227 Identities=20% Similarity=0.214 Sum_probs=173.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
|........++..+...|-...|...+++. ..+.....+|...|+..+|..+..+-++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~lek----- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELEK----- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhcC-----
Confidence 444556677899999999999998888764 33556778889999999998887775551
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.+++ ..|...||.-.--.+|+++.++.+.. .+.+...+|......++|+++.++++.+++
T Consensus 454 --~~d~-----------~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~ 513 (777)
T KOG1128|consen 454 --DPDP-----------RLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLE 513 (777)
T ss_pred --CCcc-----------hhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhh
Confidence 1222 23444555555556666666665433 233556667777778999999999999998
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~ 523 (581)
+ +|-...+|+.+|.+..+.++++.|.+.|..++... |+...++++++..|.+.|+.. +|...+
T Consensus 514 ~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~-ra~~~l 576 (777)
T KOG1128|consen 514 I--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKK-RAFRKL 576 (777)
T ss_pred c--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhH-HHHHHH
Confidence 6 56677799999999999999999999999887643 556689999999999999998 999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 524 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 524 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
++|++-. .....++.+-..+..+.|.+++|++.+.+.+.+..+..
T Consensus 577 ~EAlKcn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 577 KEALKCN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHHhhcC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 9998742 23345566666777899999999999999999887654
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.11 E-value=8.6e-08 Score=82.35 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...++..|...+..|++.+|+..|++.... -+.++....+...+|.+++..|+++.|+..+++.+... +
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence 456899999999999999999999999876 35578888999999999999999999999999988876 6
Q ss_pred CcchHHHHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLEN-----------YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 266 (581)
.++....+++.+|.+++.... ..+|+..|+..+... |+ .....+|..
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~-----------------S~y~~~A~~ 131 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PN-----------------SEYAEEAKK 131 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TT-----------------STTHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cC-----------------chHHHHHHH
Confidence 778888889999998765532 224444444444332 12 222233333
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHH
Q 008016 267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346 (581)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 346 (581)
....+.+. .+.--..+|..|.+.|.+..|...++.+++.+ ++.+....++..++..|...|..+
T Consensus 132 ~l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 132 RLAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 33222222 12334457888888888888888888888764 455667778888888888888877
Q ss_pred HHH
Q 008016 347 EAV 349 (581)
Q Consensus 347 ~A~ 349 (581)
.|.
T Consensus 196 ~a~ 198 (203)
T PF13525_consen 196 AAD 198 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=5.9e-09 Score=87.68 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|++.+|+..++++...
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence 444455 77888889999998888888776542 2333445555899999999999999999999887
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.|....+++.+|.+|.+.|++++|...|.+++++. +......+|+|..|.-.|+++.|..++..+...
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~- 197 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS- 197 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 67778999999999999999999999999999983 334467899999999999999999999998764
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
++.+. .+..|++.+....|++++|.....+
T Consensus 198 ------~~ad~---~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 198 ------PAADS---RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ------CCCch---HHHHHHHHHHhhcCChHHHHhhccc
Confidence 22232 3458999999999999999887554
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.11 E-value=3.7e-08 Score=99.96 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=170.9
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
+.-.|....++..+...+...|++++|+..++.+++. +|.....++.+|.++...+++.++... .++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4556777888999999999999999999999988774 455678888999999999998888766 555543
Q ss_pred HHhcC-----------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016 276 ELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (581)
Q Consensus 276 ~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (581)
..... .+.+..-.++..+|.+|-.+|+.++|...++++++. +|..+.+++++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 22100 012333468889999999999999999999999986 477889999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (581)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (581)
.++|+.++.+|+...-.. .........|.. .+.....+.+.=..+.++.+... ........+.-+=..
T Consensus 165 L~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~~------~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKK----KQYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGHR------EFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHHHHHHhh----hcchHHHHHHHH--HHhcCcccchHHHHHHHHHHhhh------ccchhHHHHHHHHHH
Confidence 999999999998875431 111111112211 12222333333333333322221 123344556666678
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
|...+++++++.+++.+++. .+....+...++.+|. +.|.. ...+++.+++
T Consensus 233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 89999999999999999985 3444556778888877 33333 4444444443
No 124
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=7.7e-06 Score=75.02 Aligned_cols=379 Identities=16% Similarity=0.119 Sum_probs=241.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
++..+....-..|+..|++.+.-..+... .........+..+ +.+.....+..+...+...+..+.+....+
T Consensus 130 lfQLaql~~idkD~~sA~elLavga~sAd------~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd 203 (629)
T KOG2300|consen 130 LFQLAQLHIIDKDFPSALELLAVGAESAD------HICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD 203 (629)
T ss_pred HHHHHHHHhhhccchhHHHHHhccccccc------hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence 77788888888899999887543222111 1112223333333 334445556777777777777776655444
Q ss_pred cchH--H-HHHHHHH-HHHHhccCHHHHHHHHHHHHHHHHHH-----------cCCCCHHHH--------HHHHHHHHH-
Q 008016 199 EPLL--D-AILLHMG-SMYSTLENYEKSMLVYQRVINVLESR-----------YGKTSILLV--------TSLLGMAKV- 254 (581)
Q Consensus 199 ~~~~--~-~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~--------~~~~~la~~- 254 (581)
.... . ..+..+- ..|...|+...+....++.-...... ++.+.+... .++..+-.+
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 3221 1 1122232 33556788888877777554433222 222222211 122222111
Q ss_pred -HHhcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--C
Q 008016 255 -LGSIGRAKKAVEIYHRVITILELNRGTE--SA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--D 325 (581)
Q Consensus 255 -~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~ 325 (581)
-...|-+++|.++-++++...++....+ .+ -....+-.+..+-.-.|++.+|++-...+.+.+.+..++- .
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 2245888999999999998876653333 11 1123445667777889999999999999998877652211 1
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (581)
...+.....+|......|.++.|...|..+.+.... ....+.+-.++|.+|.+.|+-+.-.+.++..
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i------ 430 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------IDLQAFCNLNLAISYLRIGDAEDLYKALDLI------ 430 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------HHHHHHHHHhHHHHHHHhccHHHHHHHHHhc------
Confidence 124555667788888889999999999999887543 3445666789999999988766544443321
Q ss_pred hcCCCC-------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016 406 YKGKEH-------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 406 ~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
++.+ .....+++..|.....++++.||...+.+.+++.... +...-++..+.-|+.+....|+..++.+
T Consensus 431 --~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 431 --GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 2221 1234566777888889999999999999999975221 1223345566778999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC--ChHHHHHHHHH
Q 008016 479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE--DDTKLLELLKR 525 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~~A~~~~~~ 525 (581)
..+-+++..++. +|++...-....+-.++...|+ .+ ...+.+.+
T Consensus 507 mvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~-~e~e~~~~ 552 (629)
T KOG2300|consen 507 MVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNE-MENEAFRK 552 (629)
T ss_pred ccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhh-HHHHHHHH
Confidence 999999998876 6777665556667778888887 33 44444443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.10 E-value=4.7e-08 Score=99.27 Aligned_cols=148 Identities=12% Similarity=0.096 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...+...+..+...+++++|+.+++.+++. .|.....++.+|.++.+.+++.++.-. .+..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------- 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE----------HKKSISALYISGILSLSRRPLNDSNLL--NLID------- 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------
Confidence 344666777777899999999999988776 788888888899888888886666444 2222
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
......++.-...++...+.. +..-.+++.+|.+|-.+|+.++|...++++++.
T Consensus 92 --------------~~~~~~~~~~ve~~~~~i~~~---------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--- 145 (906)
T PRK14720 92 --------------SFSQNLKWAIVEHICDKILLY---------GENKLALRTLAEAYAKLNENKKLKGVWERLVKA--- 145 (906)
T ss_pred --------------hcccccchhHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---
Confidence 222222332122222222221 222346777777777777777777777777776
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+|..+.+++++|..|... ++++|+.++.+|+..
T Consensus 146 -----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 146 -----DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred -----CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 456667777777777777 777777777777665
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=2.4e-07 Score=81.48 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..++..|......|++++|+..|++.+.. .+..+....+...+|.+++..+++++|+..+++.++.. ++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~ 101 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PT 101 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cC
Confidence 34778899999999999999999999876 44467777788999999999999999999999998875 77
Q ss_pred cchHHHHHHHHHHHHHhcc---------------C---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016 199 EPLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 260 (581)
+|....+++.+|.++...+ + ..+|+..+++.++.. |+++..
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya---------------- 160 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT---------------- 160 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH----------------
Confidence 7888889999998764443 1 124445555555432 222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (581)
.+|...+..+... .+.--..+|..|.+.|.+..|+.-++.+++.+ ++.+....++..++..|.
T Consensus 161 -~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 161 -TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR 223 (243)
T ss_pred -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence 2222222222111 12233467888888999999998888888765 556778888888999999
Q ss_pred HCCCHHHHHHHHHH
Q 008016 341 ANGNAEEAVELYKK 354 (581)
Q Consensus 341 ~~g~~~~A~~~~~~ 354 (581)
..|..++|......
T Consensus 224 ~lg~~~~a~~~~~~ 237 (243)
T PRK10866 224 QLQLNAQADKVAKI 237 (243)
T ss_pred HcCChHHHHHHHHH
Confidence 99998888776543
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.07 E-value=6.4e-08 Score=83.12 Aligned_cols=167 Identities=19% Similarity=0.142 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
....+...|..+...|++.+|+..|++.+... |..+....+...+|.++...|++++|+..+++.+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---- 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---- 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 34667888999999999999999999998873 5566777888999999999999999999999998875
Q ss_pred CCCChHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH 462 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~ 462 (581)
+.++....+++.+|.++..+. ...+|+..|+..+..+ |+++....+ -..
T Consensus 73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888876543 3347777777776643 344333222 234
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
+|..|.+.|.+..|+..++.+++.+ |+.+....++..++..|.++|...
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence 6889999999999999999999877 777888889999999999999876
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=5.4e-07 Score=75.36 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=150.2
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (581)
...+.++-+++..+.+.-.+.. ...++.-.++..+..+....|+.+.|..++.++...+ |....+...-
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~lk 92 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKLK 92 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHHH
Confidence 3456677777777776654432 2356677778888888899999999999999877655 2333344556
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (581)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (581)
|..+...|++++|+++|+..++ ++|....++..--.+...+|+--+|++.+...++.+ +....+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EA 156 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEA 156 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHH
Confidence 7888899999999999998876 445555556666667778899999999998888874 445789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Q 008016 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVI 359 (581)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 359 (581)
|..++.+|...|+|++|.-++++.+-+ .|........+|.+++-+| ++.-|.++|.+++++.
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999865 4556666777888877766 5677999999999984
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=7e-08 Score=82.33 Aligned_cols=224 Identities=17% Similarity=0.098 Sum_probs=162.4
Q ss_pred HHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (581)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (581)
.+..+|.+|++++.... +..|.....+..+|.+|+...+|..|..+|++.-.. .|.........+
T Consensus 21 I~d~ry~DaI~~l~s~~-------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL-------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHH-------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence 44567777877776543 334655667889999999999999999999987664 455566677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (581)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (581)
..+++.+.+..|+.......+ +......++..-+.+....+++..+..+.++.- ....+...
T Consensus 86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~ 147 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ 147 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence 899999999999887765432 122233455555677778888888876665431 12456678
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---- 408 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 408 (581)
.+.|-+.++.|++++|..-|+.+++. +.-.+.++ ++++.++.+.|+++.|+++..+.++...+...
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 89999999999999999999999986 33344433 78999999999999999999988876543311
Q ss_pred ------CC-----C------hHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 409 ------KE-----H------PSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 409 ------~~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
.+ + .....+++..+.++.+.|+++.|.+.+.
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 00 0 1123455666778889999998877654
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=2.7e-07 Score=81.13 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
..++..|..+...|++++|+..|++++... +..+....+...+|.++...+++++|+..+++.++.. +++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~ 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence 346778889999999999999999998853 4567777888999999999999999999999999984 668
Q ss_pred hhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 284 ADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
|....+++.+|.++...+ + ..+|...|++.++.+ |+++..
T Consensus 103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya----------------- 160 (243)
T PRK10866 103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT----------------- 160 (243)
T ss_pred CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-----------------
Confidence 888899999998865443 1 234555555555543 222222
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 425 (581)
.+|...+..+.... +.--..+|..|.+.|++..|+.-++.+++.+ ++.+....++..++..|
T Consensus 161 ~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay 222 (243)
T PRK10866 161 TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY 222 (243)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence 22222222222211 1112467888888899988888888887765 55677778888888999
Q ss_pred HHccCHHHHHHHHHH
Q 008016 426 SRSKNFVEAERLLRI 440 (581)
Q Consensus 426 ~~~g~~~~A~~~~~~ 440 (581)
...|..++|......
T Consensus 223 ~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 223 RQLQLNAQADKVAKI 237 (243)
T ss_pred HHcCChHHHHHHHHH
Confidence 999998888776543
No 131
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=1.3e-08 Score=84.88 Aligned_cols=114 Identities=10% Similarity=-0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (581)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (581)
....+..+|.++...|++++|+..+++++.+. ++++....++.++|.++...|++++|+..+++++.+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------- 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------- 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 45677899999999999999999999999873 334455678999999999999999999999999985
Q ss_pred CCcchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016 452 DDQSISFPMLHLGITLY-------HLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (581)
Q Consensus 452 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (581)
+|.....+..+|.++. ..|++++|...+.+++...+...+.+++..
T Consensus 102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 3444455666666666 899999999999999999988887777544
No 132
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=1.4e-08 Score=84.74 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
......++.+|.++...|++++|+..|++++.+. ++++....++.++|.++...|++++|+..+++++.+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----- 101 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----- 101 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 4456778999999999999999999999999863 234445678999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
.|.....+.++|.++. ..|+++.|...+.+++..+++..+.+++...
T Consensus 102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 3333455556666666 8999999999999999998888776665443
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=2.2e-08 Score=78.55 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
++....++.+|..+...|++++|...|+-...+ +|.....+++||.++...|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 555667899999999999999999999988775 4667889999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999986
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=6.1e-08 Score=78.44 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=100.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016 299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (581)
Q Consensus 299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (581)
..++...+...+++.+.. .++.+....+...+|.++...|++++|...|++++.. .+++.....+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence 578888887777777664 2445566788889999999999999999999999885 3556666667789
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
++.++...|++++|+..++.. ...+........+|.+|...|++++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999998652 2334455678889999999999999999999874
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=1.3e-08 Score=79.86 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
++.....+.+|..+...|++++|...|+-...+ +|.....+++||.++..+|++.+|+..|.+++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 556778899999999999999999999998887 7888999999999999999999999999999986
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
+|+....+.++|.++...|+.+.|.+.|+.++....
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 356668889999999999999999999999999863
No 136
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.1e-06 Score=71.41 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
++....+..+..-+.+|....+|++|...+.++.+..+.. ....+.+.++-..+.+......+.++..+++++..++.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3434445566666788888999999999999999877653 22345567788888999999999999999999999987
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
+. ..|+.+..-...+.-....-++++|+.+|++++.+.+.. .........+...++++.+..++++|-..+.+
T Consensus 103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 75 344544444445555567789999999999999998752 23334455667889999999999999988888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
-..+.... ...+.....+.....+|.-..+|..|...++...++ .+-..++...++.+|-..| ..|+.++..+
T Consensus 176 e~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 176 EGVAADKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred hhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 76665554 223444455666667777788999999999886654 2223455666777776554 6778777665
Q ss_pred HHH
Q 008016 479 LVL 481 (581)
Q Consensus 479 ~~~ 481 (581)
.+.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 543
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=3.3e-08 Score=79.40 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
+|........+|..+...|++++|...+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3445677889999999999999999999998886 4556788999999999999999999999999875
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|.....+..+|.++...|++++|+..++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556778899999999999999999999999987
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.1e-06 Score=73.61 Aligned_cols=192 Identities=19% Similarity=0.094 Sum_probs=142.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (581)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (581)
.+.++-.++....+...... .-.++.-..+-.+..+....|+.+-|..++++..+.+ |....+...-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHH
Confidence 45556666666665554432 1122345556667777888999999999988866652 3334555566888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (581)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (581)
+...|++++|+++|+..++ ++|....++-.--.+...+|+.-+|++.+..-++.+- .| ..+|
T Consensus 96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D----~EAW 157 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------ND----QEAW 157 (289)
T ss_pred HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------Cc----HHHH
Confidence 9999999999999998875 3566556666666677788999999999998888743 23 4567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHH
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI 444 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~ 444 (581)
..++.+|...|++++|.-++++.+-+ .|.....+..+|+++.-+| +.+-|.++|.+++++
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998765 3555566777888777666 577899999999986
No 139
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.1e-06 Score=71.34 Aligned_cols=225 Identities=11% Similarity=0.025 Sum_probs=156.9
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
....+..+..-+.+|....++++|...+.++.+..+. ....-..+..+-..+.+......+.++..+++++..++.+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~- 104 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC- 104 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-
Confidence 4445566667778888899999999999988876643 12223345556667777888899999999999999998775
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
..|+.+..-...+.-....-++++|+.+|++++.+.+.. +........+...+.++....++++|-..+.+-..+.
T Consensus 105 --GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 105 --GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred --CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 334444444445555567789999999999999997652 2233445667788999999999999999888877666
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
.+. ...+.....+.....+|....+|..|...++...++- +-..+.-..+..+|-..| ..|+.++....+.
T Consensus 181 ~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip------~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 181 DKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP------AFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc------cccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 554 2233444555566667777789999999999877652 222233344445555444 5577776655543
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=2.7e-08 Score=89.74 Aligned_cols=258 Identities=17% Similarity=0.144 Sum_probs=158.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (581)
-++..|+|..++.-.+. . ..+.+........+.+++..+|+++..+.-... ..+| ...+...
T Consensus 10 n~fy~G~Y~~~i~e~~~-~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~-~l~av~~ 71 (290)
T PF04733_consen 10 NQFYLGNYQQCINEASL-K------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSP-ELQAVRL 71 (290)
T ss_dssp HHHCTT-HHHHCHHHHC-H------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSC-CCHHHHH
T ss_pred HHHHhhhHHHHHHHhhc-c------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCCh-hHHHHHH
Confidence 35568999988865551 1 123344455667788899999998765543321 1122 1334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
++..+...++-+.++.-++..+. ..............|.++...|++++|++.+.+. ....
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE 132 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLE 132 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHH
T ss_pred HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------Cccc
Confidence 56655544444444433322111 1112223345566788888999999998877653 1234
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH--HHHHcC--ChHHHHHHHHHHHHHHHHh
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVG--RGQEGRELLEECLLITEKY 406 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g--~~~~A~~~~~~al~~~~~~ 406 (581)
.......++...++++.|.+.++.+.++ . ++..+ .+++. +....| ++.+|..+|++..+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~-eD~~l----~qLa~awv~l~~g~e~~~~A~y~f~El~~----- 195 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI-------D-EDSIL----TQLAEAWVNLATGGEKYQDAFYIFEELSD----- 195 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------S-CCHHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------C-CcHHH----HHHHHHHHHHHhCchhHHHHHHHHHHHHh-----
Confidence 4555778899999999999888776543 2 23332 33333 333444 68999999988532
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY 485 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~ 485 (581)
..+.....++.++.++..+|++++|.+.+++++. .+|....++.+++.+....|+. +.+.+++.+...
T Consensus 196 ---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 196 ---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp ---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred ---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2234456788999999999999999999999875 3456677889999999999998 456666666544
Q ss_pred HHHHHcCCCChhH
Q 008016 486 IREIAFGKDSLPV 498 (581)
Q Consensus 486 ~~~~~~~~~~~~~ 498 (581)
. .|+||.+
T Consensus 265 ~-----~p~h~~~ 272 (290)
T PF04733_consen 265 S-----NPNHPLV 272 (290)
T ss_dssp H-----TTTSHHH
T ss_pred h-----CCCChHH
Confidence 3 3677643
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.94 E-value=3.6e-08 Score=79.22 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+|........+|..+...|++++|...++++.... |....++..+|.++...|++++|..++++++...
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 77778889999999999999999999999877653 4455678899999999999999999999988752
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
|.....+..+|.++...|++++|+..++++++.
T Consensus 82 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 ----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334677889999999999999999999999987
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.5e-08 Score=86.95 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (581)
.......+-..|..+++.++|.+|+..|.+|+++ .|.++..|.+.+-+|.++|.++.|++..+.++.+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD- 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence 3455667899999999999999999999999998 89999999999999999999999999999988774
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
|....+|..||.+|..+|++++|+..|++++++
T Consensus 146 ------p~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 146 ------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 888899999999999999999999999999996
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=3.2e-08 Score=85.03 Aligned_cols=119 Identities=26% Similarity=0.242 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
.+..+..-|.-..+.++|.+|+..|.+|+++ .|..+..|.+.+.+|.++|.++.|++-++.++.+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------- 144 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------- 144 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence 4556677788899999999999999999998 6777899999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (581)
+|....+|..||.+|..+|++++|++.|++++++ .|++..+ ..+|..+-...++
T Consensus 145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-------dP~Ne~~---K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-------DPDNESY---KSNLKIAEQKLNE 198 (304)
T ss_pred -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-------CCCcHHH---HHHHHHHHHHhcC
Confidence 7889999999999999999999999999999996 5555533 3444444444443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=2e-07 Score=75.48 Aligned_cols=134 Identities=11% Similarity=0.096 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
...+..+......++...+...+++.... .++.+....+...+|.+++..|++++|...|+.+.... ++
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d 80 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----PD 80 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CC
Confidence 34566666666789999988877777654 44455667788899999999999999999999987743 33
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (581)
......+...++.++...|++++|+..++.. ++.+........+|.+|...|++++|...|++++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3444556788999999999999999998652 2334456678889999999999999999999874
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2e-07 Score=84.10 Aligned_cols=261 Identities=15% Similarity=0.099 Sum_probs=159.2
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 008016 212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (581)
Q Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (581)
-++..|+|..++.-++ +. ..+.+........+.+++..+|+++..+.-.. ...+|. ..+..
T Consensus 10 n~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av~ 70 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAVR 70 (290)
T ss_dssp HHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHHH
T ss_pred HHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHHH
Confidence 3567899888886555 11 23445566777788999999998876543221 112332 34445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (581)
.++..+...++.+.++.-++..+. +.............|.++...|++++|++.+.+. ..
T Consensus 71 ~la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~-- 130 (290)
T PF04733_consen 71 LLAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS-- 130 (290)
T ss_dssp HHHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC--
T ss_pred HHHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc--
Confidence 566655544444444443332221 1112123344556678888899999998887653 11
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhc
Q 008016 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~ 449 (581)
.........++...++++.|.+.++.+.++ . .+...+....+++....| ++.+|...|++..+
T Consensus 131 -lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------ 195 (290)
T PF04733_consen 131 -LELLALAVQILLKMNRPDLAEKELKNMQQI-----D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD------ 195 (290)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC------
T ss_pred -ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh------
Confidence 223345677899999999999988775433 1 222223333344444445 68999999998643
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~ 529 (581)
..+.....+..++.++..+|++++|...+++++. ..|....++.+++.+....|+....+.+++.+....
T Consensus 196 --~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 196 --KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred --ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 2344567788999999999999999999999865 234556789999999999999852555566654442
Q ss_pred HHHhcCCCCHHH
Q 008016 530 QEREFGSESEEV 541 (581)
Q Consensus 530 ~~~~~~~~~~~~ 541 (581)
.+.||-.
T Consensus 266 -----~p~h~~~ 272 (290)
T PF04733_consen 266 -----NPNHPLV 272 (290)
T ss_dssp -----TTTSHHH
T ss_pred -----CCCChHH
Confidence 3556644
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=1.3e-05 Score=77.48 Aligned_cols=226 Identities=13% Similarity=0.079 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH------HHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 164 ILDIIALGYVYIGDLKFVQSLLDM------MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.|..-|..|.+..++++|.++|++ ++++.+- .-+......-...|.-+...|+++.|+..|-++-.+.+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarf--afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka-- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF--AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA-- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh--hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH--
Confidence 444556666677777777777764 2222211 111222333344566677788888888888766443221
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
...-.....|.+|+..++...+. ......|-.++.-|...|+++.|+++|.++-.
T Consensus 739 --------------ieaai~akew~kai~ildniqdq---------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-- 793 (1636)
T KOG3616|consen 739 --------------IEAAIGAKEWKKAISILDNIQDQ---------KTASGYYGEIADHYANKGDFEIAEELFTEADL-- 793 (1636)
T ss_pred --------------HHHHhhhhhhhhhHhHHHHhhhh---------ccccccchHHHHHhccchhHHHHHHHHHhcch--
Confidence 12223345566666655443222 11223455677888888999888888876522
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH-
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL- 396 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~- 396 (581)
...-..+|.+.|++++|.++-+++. +| ......|...+.-+-..|++.+|+.+|
T Consensus 794 --------------~~dai~my~k~~kw~da~kla~e~~---------~~--e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 794 --------------FKDAIDMYGKAGKWEDAFKLAEECH---------GP--EATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred --------------hHHHHHHHhccccHHHHHHHHHHhc---------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 1123345777888888877666542 22 222344555566666666666666655
Q ss_pred -----HHHHHHHHHhc---------CCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 397 -----EECLLITEKYK---------GKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 397 -----~~al~~~~~~~---------~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.+++.++.+.. +..|++ .......+|.-|...|+...|...|-++-+
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 23444443321 111222 234566788888889999999888877654
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.87 E-value=1.8e-07 Score=78.30 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=88.2
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
...+..+..++.+|..+...|++++|+.+|++++.... +.+....++..+|.++...|++++|+..+++++..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 34456677889999999999999999999999998642 23334678999999999999999999999999987
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHcC
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 322 (581)
.|.....+..+|.++...|+ ++.|+..++++++.+++...
T Consensus 102 ------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 ------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred ------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 44456677788888877665 56666666666666555443
No 148
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.86 E-value=0.00019 Score=73.25 Aligned_cols=412 Identities=12% Similarity=0.019 Sum_probs=247.5
Q ss_pred CChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016 157 KGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES 235 (581)
Q Consensus 157 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (581)
.+...+.+...+|.++. ...+++.|+.+++++..+.+. ..-......+...++.++.+.+... |...+++.++..+.
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 34456778889999987 689999999999999888755 2222223445567788898888877 99999999998765
Q ss_pred HcCCCCHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016 236 RYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (581)
Q Consensus 236 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (581)
. .+.....++..+ ...+...+++..|++.++......... .+......+....+.+....+..+++.+..+++.
T Consensus 132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2 222233333333 333333489999999999998876532 2333344455556777788888999999999997
Q ss_pred HHHHHH--cCCCCchHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC----------------
Q 008016 315 KIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD---------------- 368 (581)
Q Consensus 315 ~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~---------------- 368 (581)
...... .+..++....++..+-. ++...|+++.+...+++.-....+..... ++
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~ 286 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG 286 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence 776654 11223344445544443 45567888888777766555544331111 00
Q ss_pred ----------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC---CCChH---------------HHHHHHH
Q 008016 369 ----------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPS---------------FVTHLLN 420 (581)
Q Consensus 369 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~~~~~ 420 (581)
.....-++.--|......|..++|.+++++++...++... ...+. .......
T Consensus 287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y 366 (608)
T PF10345_consen 287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY 366 (608)
T ss_pred ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence 0111222333344555667778999999999998877651 11100 1123445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC---h
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS---L 496 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~ 496 (581)
++.+..-.|++..|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++.. .
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 6777788999999999999888765543221 11223456677888888999999999999855433322222222 2
Q ss_pred hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH--HcCChhhhHHHHHHHHHHH-
Q 008016 497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNLR- 572 (581)
Q Consensus 497 ~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~l~- 572 (581)
-..-+..++..++...+... .....+.+.++.-+.... ........+...+..++. ..-...++...+.++++..
T Consensus 447 l~ila~LNl~~I~~~~~~~~-~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~ 525 (608)
T PF10345_consen 447 LYILAALNLAIILQYESSRD-DSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN 525 (608)
T ss_pred HHHHHHHHHHHHhHhhcccc-hhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence 23344555666666655543 211112223221111111 112333333333333332 2233458888888888877
Q ss_pred HHHh
Q 008016 573 MKYK 576 (581)
Q Consensus 573 ~~~~ 576 (581)
.+.+
T Consensus 526 ~~~~ 529 (608)
T PF10345_consen 526 NKLG 529 (608)
T ss_pred Hhhc
Confidence 4443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.85 E-value=1.1e-07 Score=74.55 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
.++.+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+.++++++.. .++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSP 73 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCC
Confidence 45789999999999999999999998752 344555678889999999999999999999999874 24555
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
....++..+|.++...|++++|..+++++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 566788999999999999999999999998864
No 150
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.85 E-value=0.00013 Score=70.90 Aligned_cols=228 Identities=14% Similarity=0.039 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSR------ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|..-|.+|.+..++++|.++|++ ++++.+-.++ ..+...-...|.-+...|+++.|+..|-++-...+.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka- 738 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA- 738 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence 344556677777778888877764 3444333221 122333334566667778888888777665433221
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
...-....++.+|+.+++..-.. ......|-.++.-|...|+|+.|.++|.++-
T Consensus 739 -----------------ieaai~akew~kai~ildniqdq---------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 739 -----------------IEAAIGAKEWKKAISILDNIQDQ---------KTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred -----------------HHHHhhhhhhhhhHhHHHHhhhh---------ccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 11222333455555444432111 1112234455666666677776666665541
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 522 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~ 522 (581)
. ...-..+|-+.|+|..|.++-++.. || ..+...+..-+.-....|++. +|..+
T Consensus 793 ~----------------~~dai~my~k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~-eaeql 846 (1636)
T KOG3616|consen 793 L----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFA-EAEQL 846 (1636)
T ss_pred h----------------hHHHHHHHhccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchh-hhhhe
Confidence 1 1111234555566665554444331 11 122223333333333444433 33222
Q ss_pred H------HHHHHHHHHh---------cCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 523 L------KRVLRIQERE---------FGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 523 ~------~~a~~~~~~~---------~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
| .++++++.+. .+..|+ ...++...+|.-|...|+..+|...|-++-...
T Consensus 847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK 912 (1636)
T ss_pred eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence 2 1222222221 112233 334677888999999999999999887765443
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=2.8e-07 Score=77.19 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
.+.....+.++|..+...|++++|+.++++++... ++.+....++..+|.++...|++++|+..+++++.+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---- 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 44456677999999999999999999999999874 233345678999999999999999999999999985
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCCCh
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSL 496 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~ 496 (581)
.|.....+..+|.++...|+ +++|...++++++..+.....++.
T Consensus 102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 45556677788888877654 667777777777776666544443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.82 E-value=2.1e-07 Score=72.95 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
.+++.+|..+...|++++|+..+.+++... ++++....++..+|.++...|++++|..++++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 467889999999999999999999998762 3445556788999999999999999999999998752 444
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+....++..+|.++...|++++|..+++++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 555678899999999999999999999999987
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=4e-06 Score=77.34 Aligned_cols=153 Identities=16% Similarity=0.088 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (581)
+....+.+..+..++..|++++|+..+..++... |.....+...+.++...|+..+|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALALD----- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Confidence 4556677888889999999999999998865543 4555566778999999999999999999998852
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
|.......++|.+|.+.|++.+|+..+...+.. .|+.+..|..|+..|..+|+..+|...
T Consensus 371 ---P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A--------- 430 (484)
T COG4783 371 ---PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLA--------- 430 (484)
T ss_pred ---CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence 333567788999999999999999988887654 677788899999999999988776543
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.+..|...|++++|+..+..+.+..
T Consensus 431 ----------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 ----------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3445677899999999998888763
No 154
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=6.8e-07 Score=82.23 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (581)
...++..+..+...|++++|+..++..+.. .|+....+...+.++...++..+|.+.+++++..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------- 369 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------- 369 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 445677888999999999999999986543 4555566778899999999999999999999984
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 522 (581)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~ 522 (581)
.|.......++|.+|.+.|++.+|+..+...+. +.|+....|..|+..|..+|+.. +|...
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A 430 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLA 430 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHH
Confidence 455556778999999999999999999988765 34555588999999999999877 44433
No 155
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.70 E-value=0.00023 Score=71.10 Aligned_cols=339 Identities=13% Similarity=0.034 Sum_probs=192.6
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
+.....+..-+..+...|..++|+.+.-.| .+....+..+...+.-....++..--. ..++....
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~-- 408 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPA-- 408 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCH--
Confidence 334445555566666777777777655443 122223333444444444444433222 11111100
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+--...+......++......++.+|..+..++........ +......+......|.+....|++++|+++.+.++..
T Consensus 409 -~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 409 -ELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred -HHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 00011123334457778889999999999888766543210 0011123444455677888999999999999999987
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
... .....-..++..+|.+..-.|++++|..+..++.+..++. ........+....+.++..+|+...| .-
T Consensus 488 L~~-----~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a--~~ 558 (894)
T COG2909 488 LPE-----AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARA--EQ 558 (894)
T ss_pred ccc-----ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHH--HH
Confidence 543 2233334566889999999999999999999999987765 23333445666678889999933222 22
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~ 518 (581)
.++.........+..+.........+.++...-+++.+..-....++..... .+..-...-.+..|+.++...|+.+ +
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~-~ 636 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLD-K 636 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHH-H
Confidence 2222222222112222211122222333333233666666666666654322 1222222233458999999999999 9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHcCChhhhHHHHHH
Q 008016 519 LLELLKRVLRIQEREFGSESEEVM-LTLKKVVSYLDKLGRKEEKFPLKKR 567 (581)
Q Consensus 519 A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 567 (581)
|...+.+.......-- .+.+.. .+..........+|+..+|.....+
T Consensus 637 A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 637 ALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9988888776654321 233332 2333333455668888888877666
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.69 E-value=2.5e-07 Score=86.90 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+...|..++..|++++|+..|+++++. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------- 66 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD------- 66 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3677899999999999999999999987 77788899999999999999999999999998875
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
|....+++.+|.++...|++++|+..|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 455667899999999999999999999999986
No 157
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.69 E-value=7.2e-07 Score=67.86 Aligned_cols=102 Identities=26% Similarity=0.330 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
.+.+.+|.++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35788999999999999999999999885 44566677899999999999999999999999987642 333
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33555566788899999999999998877654
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.69 E-value=1.8e-07 Score=67.39 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=65.3
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM 209 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (581)
..|++++|+.+++++++.. +.++ ....+..+|.+++..|++++|+.++++ .... +........+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-------~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~ 64 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-------PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL 64 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-------CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHC-------CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence 3689999999999999872 1123 566777899999999999999999988 3332 3334556677
Q ss_pred HHHHHhccCHHHHHHHHHHH
Q 008016 210 GSMYSTLENYEKSMLVYQRV 229 (581)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~a 229 (581)
|.++...|++++|+..++++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=9.8e-07 Score=67.14 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (581)
+++.+|+++-..|+.++|+.+|++++.. +.+.+....++..+|..+...|++++|+..+++++... ++.+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence 5788999999999999999999999884 44556677899999999999999999999999988652 2333
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (581)
........++.++...|+.++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556667788999999999999998877764
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.66 E-value=7.2e-07 Score=83.83 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
+...|..++..|++++|+.+|++++.. .|....++.++|.++...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 445688888999999999999999987 5566788999999999999999999999999987 456
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
...++..+|.++...|++++|+..|++++.+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999987
No 161
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=3.1e-05 Score=80.28 Aligned_cols=250 Identities=16% Similarity=0.131 Sum_probs=181.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+|.....|...-......++.++|.+..++|+....-.-+......+.++.||-..| |.-+.-.+.|++|.+.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch-
Confidence 566667777777778899999999999999997641110111223555566655544 5667778889998887432
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
..++..|..+|...+++++|.++++..++.+. ....+|...|..+..+.+-++|..++++|+
T Consensus 1530 ----------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 ----------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred ----------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34667899999999999999999999888753 345688889999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 522 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~ 522 (581)
....+ ..........|.+-++.|+.+.+..+|+..+.. +|...+.|......-.+.|+.. .+..+
T Consensus 1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~-~vR~l 1656 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIK-YVRDL 1656 (1710)
T ss_pred hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHH-HHHHH
Confidence 85422 234456677899999999999999999988763 4556677888888888999988 89999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChhhhHHHHHHHHHHHHHH
Q 008016 523 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 523 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~l~~~~ 575 (581)
|++++.+- -.+..+.-++..=.-|.+ .|+-+.....-.+|.+.-+..
T Consensus 1657 feRvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1657 FERVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred HHHHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 99998742 234444444443334443 466666555556666555443
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.63 E-value=2.9e-07 Score=66.33 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=66.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (581)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (581)
+|+++.|+.++++++..... .+ ....+..+|.+|...|++++|+.++++ ... .+........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 68999999999999987421 23 455777799999999999999999998 443 3344667778899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 008016 296 LFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~a 313 (581)
++..+|++++|++.++++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=3.8e-05 Score=79.65 Aligned_cols=211 Identities=15% Similarity=0.065 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
+|.....|...-......++.++|.+..++||....-. ...+....|..+-++...-|.-+.-.+.|++|.+.+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---
Confidence 34445667777777888999999999999999874211 122233444444444444566677778888888764
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
+....+..|..+|...+++++|.++++.+++.+.+. ..+|..++..+.++++-+.|..++.+|+
T Consensus 1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 234677889999999999999999999999986532 4567889999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
....+ ..........|.+-++.|+.+.+..+|+..+.. +|.....|......-...|+.+.+..+|
T Consensus 1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 87633 223455667788999999999999999998873 5666677888888888999999999999
Q ss_pred HHHHHHH
Q 008016 481 LEALYIR 487 (581)
Q Consensus 481 ~~a~~~~ 487 (581)
++++.+.
T Consensus 1658 eRvi~l~ 1664 (1710)
T KOG1070|consen 1658 ERVIELK 1664 (1710)
T ss_pred HHHHhcC
Confidence 9998753
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-06 Score=77.79 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=107.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
...-|..|++.|+|..|...|++++.........+.. ....++.+++.++.++++|.+|+....++|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---- 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL---- 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence 4567899999999999999999999887644332222 34567899999999999999999999999988
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKALR 357 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 357 (581)
.|....+++.-|.++...|+++.|+..|++++++ .|..-.+...+..+-.+..++.+ ..+.|..++.
T Consensus 287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677899999999999999999999999999987 34444555556655555444433 4667777666
Q ss_pred HH
Q 008016 358 VI 359 (581)
Q Consensus 358 ~~ 359 (581)
..
T Consensus 355 k~ 356 (397)
T KOG0543|consen 355 KL 356 (397)
T ss_pred cc
Confidence 53
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.59 E-value=2e-06 Score=76.12 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=87.4
Q ss_pred HHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016 376 RIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 376 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
.+..|..+ ...|++++|+..|+..+..+ ++++....+++.+|.+|...|++++|+..|++++.. .++++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s~ 214 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKSP 214 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCc
Confidence 35555554 56799999999999998875 455666778999999999999999999999999884 36778
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
....++..+|.++...|++++|...|+++++.+
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 889999999999999999999999999998865
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.58 E-value=3.6e-05 Score=65.62 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..|...|...++.|++++|+..|+.+... -+..|-...+...++.++++.++++.|+...++.+... +.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P~ 103 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----PT 103 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CC
Confidence 45899999999999999999999988754 45567778899999999999999999999999988886 77
Q ss_pred cchHHHHHHHHHHHHHhc-----cCHH---HHHHHHHHHHHHHHHHcCCCCH--------------HHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTL-----ENYE---KSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVLG 256 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~~ 256 (581)
+|+...+++..|.+++.. .+.. +|..-+++.+... |+++ ..+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887643 3333 3444444444332 2222 12233446789999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 008016 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310 (581)
Q Consensus 257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 310 (581)
+.|.+-.|+..++++++... +.+....++..+...|..+|-.++|...-
T Consensus 179 kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999999988753 35566778889999999999999987643
No 167
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.58 E-value=4.9e-07 Score=62.42 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI 316 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 316 (581)
+..+..+|.++...|++++|+..|+++++. +|....++.++|.++..+| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999999998 6778899999999999999 799999999999986
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=5.4e-07 Score=62.19 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV 358 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 358 (581)
+.++..+|.++...|++++|+..|.++++. +|....++.++|.++...| ++++|+..+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567899999999999999999999999997 5677889999999999999 799999999999986
No 169
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.57 E-value=0.0014 Score=67.01 Aligned_cols=434 Identities=12% Similarity=0.065 Sum_probs=254.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (581)
.+..+.+.+... |....++.++..+.. .......++..+ .......+++..|.+.++......... .+....
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~-----~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~~~ 178 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETY-----GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPAVF 178 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHHHH
Confidence 366666666666 999999988875441 122223333333 333333489999999999988876532 222233
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR--YGKTSILLVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
..+....+.+....+..+++++..+++....... .+...+....++..+-. ++...|+++.+...+++.-+.....
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3334455667778888999999999997776643 11123333444444443 4456788777777766554443332
Q ss_pred cCCC-------C-----------------h----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC--
Q 008016 279 RGTE-------S-----------------A----------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG-- 322 (581)
Q Consensus 279 ~~~~-------~-----------------~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 322 (581)
.... + + -.+-++..-|......|..++|.++++++++..++...
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 1110 0 0 01223344456667778888999999999999888751
Q ss_pred -CCCch---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc
Q 008016 323 -ENDGR---------------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386 (581)
Q Consensus 323 -~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 386 (581)
...+. .......++.+..-.|++..|....+.+.....+... .........+++..|..+...
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPS-KLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCcc-chhhhhhHHHHHHHHHHHHHc
Confidence 11110 1223445677778899999999999998887664300 011333455667788899999
Q ss_pred CChHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHHH
Q 008016 387 GRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG-PDDQSISFPMLH 462 (581)
Q Consensus 387 g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~ 462 (581)
|+.+.|+..|.+.......... ....-...+..++..++...+.......-+.+.++..+.... ..+.....++..
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 9999999999854433222211 222333445566777777666544422222333332222111 111222222222
Q ss_pred HHHHHH--HcCChHHHHHHHHHHHHHH-HHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016 463 LGITLY--HLNRDKEAEKLVLEALYIR-EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539 (581)
Q Consensus 463 la~~~~--~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~ 539 (581)
+..++. ..-...++...+.++++.. ... .++.-...++..++..+. .|+.. +......++.....+. ++..
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~-e~~~~s~~a~~~A~k~--~d~~ 571 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVG-EQAKKSARAFQLAKKS--SDYS 571 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHH-HHHHHHHHHHHHHHhh--hhhh
Confidence 222222 2233458999999999988 433 233344456677777776 77777 7666667777776654 1222
Q ss_pred HHHH---HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 540 EVML---TLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 540 ~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
+... +-..+...|...|+.++|.....+.-..
T Consensus 572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 2222 2235667789999999999988876543
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=9.2e-05 Score=62.93 Aligned_cols=246 Identities=17% Similarity=0.126 Sum_probs=153.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (581)
-++..|+|..++..-++.... +........+.+.|...|++..-+.-.... ...+ ..+...
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~~~~--lqAvr~ 77 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVISEIKEG---------KATP--LQAVRL 77 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHcccccccccccccc---------cCCh--HHHHHH
Confidence 345578888877766553211 133334566778888888876544332211 1111 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
++.....-++.++-+.-..+-+.. ............-|.+|...|++++|++....... ..
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-------------lE 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-------------LE 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-------------HH
Confidence 555555555554444333332221 11222334455568899999999999988876332 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 406 (581)
+...-..++.+..+.+-|...++++.++.++ . ++..||..+.. .+++.+|.-+|++.-+
T Consensus 139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------~----tLtQLA~awv~la~ggek~qdAfyifeE~s~----- 201 (299)
T KOG3081|consen 139 AAALNVQILLKMHRFDLAEKELKKMQQIDED--------A----TLTQLAQAWVKLATGGEKIQDAFYIFEELSE----- 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------H----HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence 3333456777888899999999888876332 1 23456666654 3456777777766432
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (581)
..+.+...++..+.+...+|++++|...++.++. ..+....++.++..+-...|...++..-+-.
T Consensus 202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 1344556788999999999999999999999998 3455567788888888889988776654443
No 171
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.5e-05 Score=63.85 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=121.9
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (581)
+...+++++|.++|.++-.+.+ ...++..|=..|.++-+...+. .+..+.+.++..
T Consensus 24 fgg~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~--~skhDaat~Yve 79 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVE 79 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 3445688899888888765443 3334444444455554444332 122334555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (581)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (581)
.+.+|.+ ++..+|..+++++++++... +.-...+.-...+|.+|... .++++|+.+|+++-+.+... .....
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ss 152 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSS 152 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhh
Confidence 5666544 48888888888888887655 22223344566788888765 89999999999999987641 22333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
...++...+..-...++|.+|+..|++.....-. ..- ...-..+..-|.++....+.-.+...+++-.+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 4455666777778889999999999987654311 110 01112344456666666676665555555444
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.55 E-value=4.5e-06 Score=73.94 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=88.7
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 246 TSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 246 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
...+..+..+ ...|+|++|+..|+..++.+ ++++....+++.+|.+|...|++++|...|+++++.+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999874 4455667899999999999999999999999999864 66
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
++....++..+|.++...|++++|...|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78899999999999999999999999999998863
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=5.5e-05 Score=64.55 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
.+..+++-|....+.|++++|...|+..... .|..+....+...++.++.+.+++++|+...++-+...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---- 101 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---- 101 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----
Confidence 3456777888889999999999999987753 45556667778899999999999999999999988875
Q ss_pred CCCChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGITLY 468 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~la~~~~ 468 (581)
+.||+...+++..|..+... .+...+...+...-+...+. |+++....+ -..+|..|.
T Consensus 102 -P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 102 -PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred -CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788777888777776543 23333444343333333332 333322221 234688999
Q ss_pred HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH
Q 008016 469 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 521 (581)
Q Consensus 469 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~ 521 (581)
+.|.+-.|+.-++++++-. ++.+....++..+..+|..+|-.+ +|..
T Consensus 179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~ 225 (254)
T COG4105 179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK 225 (254)
T ss_pred HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence 9999999999999998866 556677789999999999999888 6644
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.1e-06 Score=77.48 Aligned_cols=136 Identities=18% Similarity=0.199 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
-.-|..|++.|+|..|...|++++.......+.+.. ....++.|++.++.++++|.+|+....+++++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 456789999999999999999999887543222211 12357889999999999999999999999985
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
.|....+++.-|.++...|+++.|+..|++++++. |++ ..+...|..+..+...+.....++|.+++.
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N---ka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN---KAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778899999999999999999999999999865 444 344555555554444333233445555443
No 175
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00029 Score=65.19 Aligned_cols=408 Identities=16% Similarity=0.119 Sum_probs=230.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-----c
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS-----L 195 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~ 195 (581)
.+..+..++....+..|++.....+....... ....+..-...-..+......++|+.++.-+..+... .
T Consensus 103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le-----~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLE-----SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred hhhhheeeeeHhhcchHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45556666777778888887776665544332 2222222333344455566677777766554433211 0
Q ss_pred CCC----------cchHHH-----------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016 196 KDD----------EPLLDA-----------ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (581)
Q Consensus 196 ~~~----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (581)
+.. .|..+. +....-..+....+...+..-...++.+. .+ ...++...+..
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-----~~---s~~~l~LKsq~ 249 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-----QD---SSMALLLKSQL 249 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-----CC---CcHHHHHHHHH
Confidence 100 111110 00111112222223222222222222221 12 24456667888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCC------
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKVYGEND------ 325 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~------ 325 (581)
++..|++.+|.+.+...- +.+...+.-.|. ....++++|.+++..|.|.-+..+|.+|+. .+.+...+-.
T Consensus 250 eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 999999999998876432 222111111232 334568999999999999999999999996 4433321101
Q ss_pred ---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC--------------
Q 008016 326 ---GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------- 388 (581)
Q Consensus 326 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------- 388 (581)
......+++.|..|...|++-.|.++|.++...+... ...|..+|.++....+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n----------PrlWLRlAEcCima~~~~l~ee~~~s~s~~ 398 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN----------PRLWLRLAECCIMALQKGLLEEGNSSLSRS 398 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHHhhhhhhhhccCCcccc
Confidence 1245678899999999999999999999999987542 2345666666543110
Q ss_pred -----------------------------------hHHHHHHHHHHHHHHHHh---------------------------
Q 008016 389 -----------------------------------GQEGRELLEECLLITEKY--------------------------- 406 (581)
Q Consensus 389 -----------------------------------~~~A~~~~~~al~~~~~~--------------------------- 406 (581)
.+-|.-+++.++-+..+.
T Consensus 399 ~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~ 478 (696)
T KOG2471|consen 399 EIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNT 478 (696)
T ss_pred cceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCC
Confidence 223444455544333100
Q ss_pred -------cC-------CCChH--------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 407 -------KG-------KEHPS--------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 407 -------~~-------~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
.| +..|. ...++.+.+.+-...|+.-.|+..-.+.++. ++...++.-||
T Consensus 479 t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~lS~~~kfLG 549 (696)
T KOG2471|consen 479 TTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------ADLSKIYKFLG 549 (696)
T ss_pred CcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hhhhhHHHHHH
Confidence 00 01111 1234555667778899999999988888774 34445555566
Q ss_pred HHHH-----HcCChHHHHHHHHHHH------H--HHHHHcCC-------------C-------Chh--HHHHHHHHHHHH
Q 008016 465 ITLY-----HLNRDKEAEKLVLEAL------Y--IREIAFGK-------------D-------SLP--VGEALDCLVSIQ 509 (581)
Q Consensus 465 ~~~~-----~~g~~~~A~~~~~~a~------~--~~~~~~~~-------------~-------~~~--~~~~~~~la~~~ 509 (581)
.+|. ...+..+|...+.--+ . ..+.-++. . .++ ....+.+||.++
T Consensus 550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 5554 5677777776654310 0 00000000 1 111 123478899999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 510 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 510 ~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
.-+|+++ +|..++..+..+..... + ..+...-..+-...|+...|...+++.
T Consensus 630 alq~~~d-qAk~ll~~aatl~hs~v----~--~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 630 ALQGHHD-QAKSLLTHAATLLHSLV----N--VQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHhcccH-HHHHHHHHHHHhhhccc----c--HHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 9999999 99999998887654221 1 122222233446789999998887764
No 176
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.50 E-value=3.8e-05 Score=65.16 Aligned_cols=242 Identities=15% Similarity=0.129 Sum_probs=165.5
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 008016 176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255 (581)
Q Consensus 176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 255 (581)
.+.++|+.-|++++++- ++....-..++-.+..+++..|+|++-...|.+.+...+.....+... .+.+.+-..-
T Consensus 41 ~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi 115 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI 115 (440)
T ss_pred cCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence 47888999999988775 333344456778888999999999999999999998877654444332 1122222222
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc----hHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMA 331 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~ 331 (581)
....+.+--..+|+..++..+.. .+......+-..||.+|...|+|.+-.+.+.+.-..++..-|.++. .....
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 23444555556677666665543 2333344556679999999999999888888877776655444432 35566
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (581)
|..-..+|..+.+-.+-..+|++++.+-.. -|.+..+..+...=|..+.+.|++++|..-|=+|..-+.+. |...
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSA----IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs-GspR 268 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSA----IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES-GSPR 268 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhcc----CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-CCcc
Confidence 666677888888888888999999987543 35555555555556777888999999998888887776554 2223
Q ss_pred hHHHHHHHHHHHHHHHcc
Q 008016 412 PSFVTHLLNLAASYSRSK 429 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g 429 (581)
.....-|..||..+.+.|
T Consensus 269 RttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 269 RTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 334445667788777765
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.50 E-value=6.5e-07 Score=60.85 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.+|..+...|++++|+..|+++++ .+|....++..+|.++..+|++++|+.+|+++++..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999987 468889999999999999999999999999998764
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.49 E-value=1.3e-06 Score=65.35 Aligned_cols=96 Identities=26% Similarity=0.390 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|...+++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 4678899999999999999999999886 23334778899999999999999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367889999999999999999999988764
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.49 E-value=2.3e-05 Score=58.36 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..+-..+..+...|+.+.|++.|.+++.+ -|..+.+|++.+..+..+|+.++|..-+++++++. ++.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~ 110 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQ 110 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Ccc
Confidence 44677888899999999999999999988 78889999999999999999999999999999887 455
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
......++...|.+|...|+-+.|..-|+.+-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5556677888999999999999999999998776
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=3.6e-05 Score=63.03 Aligned_cols=204 Identities=16% Similarity=0.085 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
...+..++..|..|-..|-+.-|..-|.+++.+ .|..+.+++.||..+...|+++.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 455777888899999999999999999999998 6778899999999999999999999999999876
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE-CL 400 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 400 (581)
+|..-.+..|.|..+..-|++.-|.+-+.+-.+. .|.+|... .|.. +-...-++.+|..-+.+ +.
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQRAE 194 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHHHH
Confidence 5666677888899999999999998877765443 34444432 2211 12233456677654433 22
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
...+. ...+..+-..| |+..+ ..+++++.+-.+.. ..-......+++.||..+...|+.++|..+|
T Consensus 195 ~~d~e-----~WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 195 KSDKE-----QWGWNIVEFYL-------GKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred hccHh-----hhhHHHHHHHH-------hhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 22111 11111122222 22221 12233333311100 0001123457888999999999999999999
Q ss_pred HHHHHH
Q 008016 481 LEALYI 486 (581)
Q Consensus 481 ~~a~~~ 486 (581)
+-++.-
T Consensus 261 KLaian 266 (297)
T COG4785 261 KLAVAN 266 (297)
T ss_pred HHHHHH
Confidence 988763
No 181
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.9e-05 Score=62.61 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=124.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (581)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (581)
-.+++++|.++|.++-.+++ ...+++.|-..|.++-+...+. .+..+.+..|..
T Consensus 26 g~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~--~skhDaat~Yve 79 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVE 79 (288)
T ss_pred CCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 34577888888777665543 3334444444555554444333 233344556666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (581)
.+.+|.+ ++.++|...++++++++.... .-...+..+..+|.+|..- .++++|+.+|+++-+.+... ......-
T Consensus 80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssAN 154 (288)
T KOG1586|consen 80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSAN 154 (288)
T ss_pred HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHH
Confidence 6666655 489999999999999887652 1122334456788888875 89999999999998877532 1112223
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 500 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE----VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 500 ~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
.++...+..-...+++. +|+..|++.....- +++. .-..+..-|.++...++.-.+...+++-.++.|.+
T Consensus 155 KC~lKvA~yaa~leqY~-~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYS-KAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 45666777777888888 88888888764321 1121 11234455666666677766666666666665554
Q ss_pred hh
Q 008016 576 KQ 577 (581)
Q Consensus 576 ~~ 577 (581)
..
T Consensus 229 ~d 230 (288)
T KOG1586|consen 229 TD 230 (288)
T ss_pred cc
Confidence 43
No 182
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00024 Score=60.45 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=148.2
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (581)
++..|+|..++..-++.-. . +........+.+.|..+|.+..-+.-... + ..+ ...+...
T Consensus 18 ~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~-~~~-~lqAvr~ 77 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKE---------G-KAT-PLQAVRL 77 (299)
T ss_pred HHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHccccccccccccc---------c-cCC-hHHHHHH
Confidence 4557777776665544322 1 12344556677888888877544332211 1 111 2233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (581)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (581)
++.....-++.++-+.-..+-+.. ............-|.+|...|++++|.+.......+ +
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E------------ 138 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-E------------ 138 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-H------------
Confidence 555554445544443333332221 222223344455678899999999999988773322 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHh
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 448 (581)
+...-..++.+..+.+-|+..++++.++.+.. ++..||..+.+ .+++.+|.-+|++.-+
T Consensus 139 --~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----------tLtQLA~awv~la~ggek~qdAfyifeE~s~----- 201 (299)
T KOG3081|consen 139 --AAALNVQILLKMHRFDLAEKELKKMQQIDEDA----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE----- 201 (299)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence 11223357778889999999998887764332 44445554443 3457777777776543
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE 521 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~ 521 (581)
..+.+...+..++.++..+|++++|...++.++... +...+++.++..+-...|... ++.+
T Consensus 202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~ 262 (299)
T KOG3081|consen 202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTE 262 (299)
T ss_pred ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHH
Confidence 234455688899999999999999999999998733 344578889988888999987 5443
No 183
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.46 E-value=2.9e-05 Score=57.83 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
.+-.-|......|+.+.|++.|.+++.+. |..+.+|++.+..+.-+|+.++|++-+++++++ .++.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL------ag~~ 110 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALEL------AGDQ 110 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh------cCcc
Confidence 34455778889999999999999999884 566789999999999999999999999999998 3455
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
......++...|.+|..+|+.+.|..-|+.+-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 6667778889999999999999999999998776
No 184
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.43 E-value=0.00076 Score=61.27 Aligned_cols=254 Identities=19% Similarity=0.153 Sum_probs=146.0
Q ss_pred HHcCChHHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHH-Hc-CCCC----HHH
Q 008016 173 VYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLES-RY-GKTS----ILL 244 (581)
Q Consensus 173 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~~----~~~ 244 (581)
...|+++.|..++.++..... ..+.....++..+++.|......+ ++++|..+++++.++... .. ...+ ...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467999999999999888763 222333456778899999999999 999999999999999754 10 1111 246
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..++..++.+|...+.++...+ ..++++..+...+ ++| ..+..--.+....++.+.+.+.+.+++....-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~----- 153 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH----- 153 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence 7788999999999888764444 3344444433322 223 23322223333378899999988888764210
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEECL 400 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al 400 (581)
.............-+.. .....|...+...+...-. .+++. ..... -+..++...+ +.... ++..+..+
T Consensus 154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHH
Confidence 11112222122212222 2345666666666553221 11221 22221 2222333322 22222 34444444
Q ss_pred HHHHHhcC-CCChHHH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 401 LITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 401 ~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
....+..+ +-.+... ..+.+.|.-..+.++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 43333222 2233322 3455678888999999999999997764
No 185
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.43 E-value=2.2e-06 Score=64.02 Aligned_cols=96 Identities=21% Similarity=0.446 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (581)
+++.+|..+...|++++|+..++++++.. +. ...++..+|.++...|++++|+..+++++... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46788999999999999999999998752 22 23678899999999999999999999998862 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
....++..+|.++...|++++|...+.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33467889999999999999999999988764
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=6.1e-06 Score=70.95 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+++.+..+++.|+|..|...|..-++. .++++..+.+++.||.+++.+|++++|...|..+.+-. +++|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence 899999999999999999999998876 56688889999999999999999999999999988765 6678
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
...+.++.+|.+....|+.++|...|+++++.+
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 888899999999999999999999999998864
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.37 E-value=2e-06 Score=58.45 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.+|..+...|++++|+..|+++++. .|....++..+|.++..+|++++|+..|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999875 6888999999999999999999999999999976
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.35 E-value=0.0014 Score=59.50 Aligned_cols=255 Identities=17% Similarity=0.140 Sum_probs=145.9
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh-c-CCCC----hh
Q 008016 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTES----AD 285 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~----~~ 285 (581)
.+.+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.+.. . ...+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877643222222367888999999999999 9999999999999997551 1 1122 24
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
...++..++.+|...+.++...+ ..++++..++.++ +++... ..--.+....++.+++.+.+.+++....-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~---- 153 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH---- 153 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc----
Confidence 46678899999999998865544 3444555444432 233322 11122233378899999999988875321
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHc--cCHHHH--HHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRS--KNFVEA--ERLLRI 440 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~--g~~~~A--~~~~~~ 440 (581)
++.. +..+ .....-+.. .....|...+...+...-. ..++ ...... +-.++... ++.... ++..+.
T Consensus 154 -~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~v-l~~~~~~~~~~~~~~~~~i~~l~~ 224 (278)
T PF08631_consen 154 -SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKLV-LTRVLLTTQSKDLSSSEKIESLEE 224 (278)
T ss_pred -ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHHH-HHHHHHHcCCccccchhHHHHHHH
Confidence 1111 1111 111111222 3345666666665543221 1122 222211 11222222 222222 344444
Q ss_pred HHHHHHHhcC-CCCcchH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 441 CLDIMTKTVG-PDDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 441 al~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
.++...+..+ +-.+... ..+.+.|...++.++|++|..+|+-++.
T Consensus 225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4443333222 2222222 2344668888999999999999997763
No 189
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.34 E-value=0.0001 Score=62.68 Aligned_cols=242 Identities=14% Similarity=0.117 Sum_probs=162.6
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-CCcchHHHHHHH
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLH 208 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 208 (581)
+..++++|+.-|++++++- +....--..++..+..+++..|++++-...|.+++...+... .+... ...+.
T Consensus 39 ~e~~p~~Al~sF~kVlelE------gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~ 110 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELE------GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINS 110 (440)
T ss_pred cccCHHHHHHHHHHHHhcc------cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHH
Confidence 3457899999999999862 223344456788899999999999999999998877654321 11111 12233
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC----h
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A 284 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 284 (581)
+-..-....+.+--..+|+..++..+.. .+......+-..+|.+|+..|.|.+-.+.+++....++...|.++ .
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 3333344555666667777777665543 222333445567899999999999988888887777665544433 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
....+|..-..+|..+.+-.+-..+|++++.+-..+ .||... ...-.-|..+.+.|++++|-.-|-+|.+.+.++
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs- 264 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES- 264 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence 345666666788999999888888999998874433 244432 223334567888999999999999988877663
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcC
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVG 387 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g 387 (581)
+.......--|..||..+...|
T Consensus 265 --GspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 265 --GSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred --CCcchhHHHHHHHHHHHHHHcC
Confidence 3333344445567788777765
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33 E-value=9.5e-06 Score=69.81 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=91.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 008016 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (581)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 497 (581)
.++.|.-+...|+|.+|...|..-++. .|+.+....+++.||.+++.+|++++|...|..+++-+ |++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 667777788899999999999998884 36778888999999999999999999999999998865 78888
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
..+++..||.+..++|+.+ +|...|+++++-+
T Consensus 214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence 8899999999999999999 9999999998754
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00044 Score=58.66 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.+.+.+..++...|+|.-....+.+.++. +++........+|.+..+.|+.+.|..+++++-+......+ -
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~ 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--L 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--c
Confidence 35677888888999999999999988873 33444556778899999999999999999987765544322 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
.....+..+.+.+|...+++.+|...+.+.+.. ++..+.+.++.|.+....|+...|++..+.+++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~----- 315 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ----- 315 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 334567788899999999999999999888764 5667788899999999999999999999998876
Q ss_pred cCCCCChHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELL 383 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~ 383 (581)
.|.+........+|..+|
T Consensus 316 --~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 316 --DPRHYLHESVLFNLTTMY 333 (366)
T ss_pred --CCccchhhhHHHHHHHHH
Confidence 333433333444554444
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00055 Score=56.36 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+...+..++..|..|-..|-+.-|..-|.+++.+. |..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 45566778888889999999999999999988775 777788999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-ILKI 316 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~ 316 (581)
+|..-.+..+.|..++.-|++.-|.+-+.+-.+. .+++|-... |..+ -...-++.+|..-+.+ +...
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHHHHhc
Confidence 2444566778888888999999998877654443 233443322 1111 1233456666654432 2221
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396 (581)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (581)
+... ..++ +... ..|+..+ ...++++....++. ..-......++..+|..+...|+.++|..+|
T Consensus 197 -------d~e~--WG~~-iV~~--yLgkiS~-e~l~~~~~a~a~~n---~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 197 -------DKEQ--WGWN-IVEF--YLGKISE-ETLMERLKADATDN---TSLAEHLTETYFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred -------cHhh--hhHH-HHHH--HHhhccH-HHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1111 1111 1111 1222221 12333333322110 0112344567889999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431 (581)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 431 (581)
+-++.-..- +..+...+...|+.+.-.+.+.
T Consensus 261 KLaiannVy----nfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 261 KLAVANNVY----NFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHhHH----HHHHHHHHHHHHHHhccccchh
Confidence 987764211 1122233455555555444333
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.4e-05 Score=66.67 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY 317 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 317 (581)
+|..+.-|..||.+|...|++..|...|.+++++ .++....+..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 4556788999999999999999999999999998 4445666777787776553 456788999999875
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|....+...||..++..|+|.+|...++..++.
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6677889999999999999999999999999987
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2e-05 Score=68.71 Aligned_cols=106 Identities=19% Similarity=0.045 Sum_probs=88.1
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Q 008016 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE--DDTKLLELLKRVLRI 529 (581)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~~A~~~~~~a~~~ 529 (581)
.+|.....|..||.+|..+|++..|...|.+++++. +++| +.+..+|.++..+.+ ...++..++++++.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~- 221 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKARALLRQALA- 221 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence 368888899999999999999999999999999876 5555 556777776655443 33588889999887
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 530 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
.+|..+.++..||..+..+|++.+|...++.+++..+
T Consensus 222 -------~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 222 -------LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred -------cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 3567789999999999999999999999999988754
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.28 E-value=4.7e-05 Score=74.86 Aligned_cols=137 Identities=11% Similarity=0.079 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHH
Q 008016 206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA--------KKAVEIYHRVITI 274 (581)
Q Consensus 206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~ 274 (581)
++..|..+...+ +...|+.+|++++++ +|..+.++..++.++.....+ ..+....++++.+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 455566665544 478999999999986 344566666666666543222 2233333332222
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
+..+....++..+|......|++++|...+++++++ .+. ..++..+|.++...|++++|++.|++
T Consensus 414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 113333577888899999999999999999999986 233 57899999999999999999999999
Q ss_pred HHHHHHhhccCCCCChHH
Q 008016 355 ALRVIKDSNYMSLDDSIM 372 (581)
Q Consensus 355 al~~~~~~~~~~~~~~~~ 372 (581)
|+.+ .|..+..
T Consensus 479 A~~L-------~P~~pt~ 489 (517)
T PRK10153 479 AFNL-------RPGENTL 489 (517)
T ss_pred HHhc-------CCCCchH
Confidence 9986 5555543
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.25 E-value=6.8e-05 Score=73.73 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHH
Q 008016 245 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRI 313 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a 313 (581)
+..++..|..+...++ ..+|+.+|++++++ +|+.+.++..++.++.....+. .+.....++
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4445556666665544 78999999999998 6777888888777775543322 223333332
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (581)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (581)
+.+ +..+....++..+|..+...|++++|...+++++.+ .++ ...+..+|.++...|++++|+
T Consensus 411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------~ps----~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------EMS----WLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCC----HHHHHHHHHHHHHcCCHHHHH
Confidence 221 123333567788888888999999999999999986 221 457789999999999999999
Q ss_pred HHHHHHHHH
Q 008016 394 ELLEECLLI 402 (581)
Q Consensus 394 ~~~~~al~~ 402 (581)
+.|++|+.+
T Consensus 474 ~~~~~A~~L 482 (517)
T PRK10153 474 DAYSTAFNL 482 (517)
T ss_pred HHHHHHHhc
Confidence 999999887
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.24 E-value=0.0035 Score=56.70 Aligned_cols=298 Identities=15% Similarity=0.081 Sum_probs=194.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (581)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (581)
|.+-...||-..|...-.+..++. ..+.+-+.. ..-+..-.-.|+++.|.+-|+-++. +......-+
T Consensus 91 GliAagAGda~lARkmt~~~~~ll---ssDqepLIh--lLeAQaal~eG~~~~Ar~kfeAMl~--------dPEtRllGL 157 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLL---SSDQEPLIH--LLEAQAALLEGDYEDARKKFEAMLD--------DPETRLLGL 157 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhh---hccchHHHH--HHHHHHHHhcCchHHHHHHHHHHhc--------ChHHHHHhH
Confidence 444556788889988888876554 334444433 3335555678999999999998775 222222223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (581)
..|-.--...|..+.|..+-+++-.. -|....+....-...+..|+++.|+++.+...+.. ..+++..+.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR 227 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAER 227 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHH
Confidence 33333445689999999999988776 44556666666677788999999999998776542 222222222
Q ss_pred HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016 329 GMA--MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 329 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (581)
..+ +..-+... -..+...|...-.++.++ .++- .-.-..-+..+...|+..++-.+++.+-+.
T Consensus 228 ~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL-------~pdl---vPaav~AAralf~d~~~rKg~~ilE~aWK~---- 292 (531)
T COG3898 228 SRAVLLTAKAMSL-LDADPASARDDALEANKL-------APDL---VPAAVVAARALFRDGNLRKGSKILETAWKA---- 292 (531)
T ss_pred HHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc-------CCcc---chHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence 222 22222222 234577788877777775 2221 112244678899999999999999987764
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
..||+.... |....--+.++.-++++-.+.. -.|+...+...++..-...|++..|..--+.+..+
T Consensus 293 --ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 293 --EPHPDIALL-------YVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred --CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 457766544 3333333455666666655321 24566778888899999999999999888877664
Q ss_pred HHHHcCCCChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHH
Q 008016 487 REIAFGKDSLPVGEALDCLVSIQTRL-GEDDTKLLELLKRVLR 528 (581)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~~A~~~~~~a~~ 528 (581)
. | ...++..|+.+-... |+.. +....+.+++.
T Consensus 359 ~--------p-res~~lLlAdIeeAetGDqg-~vR~wlAqav~ 391 (531)
T COG3898 359 A--------P-RESAYLLLADIEEAETGDQG-KVRQWLAQAVK 391 (531)
T ss_pred C--------c-hhhHHHHHHHHHhhccCchH-HHHHHHHHHhc
Confidence 3 1 225677788887766 8877 88888888875
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.24 E-value=0.00023 Score=56.90 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..-...||......|++.+|..+|++++.-. .......+..+++.....+++..|...+++..+.- .
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------p 155 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------P 155 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------C
Confidence 3446778999999999999999999998642 23346678889999999999999999999887652 1
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
..........+|..+...|++.+|...|+.++..+ |+.. .....+..+..+|+.++|..-+....+..
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 12233445668999999999999999999999873 2222 22456788999999999988776655544
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.23 E-value=5.5e-05 Score=58.61 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 453 (581)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (581)
..++.-|.-....|+|++|++.++.....+ +..+....+...|+.+|.+.|++++|+..+++-+++ .|.|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h 80 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH 80 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence 345788999999999999999999866553 444556678899999999999999999999999985 6889
Q ss_pred cchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 008016 454 QSISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR 487 (581)
Q Consensus 454 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~ 487 (581)
|.+..+++..|.++..+.. ..+|...|++.+..+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 9999999999998888766 667777777777655
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=0.00033 Score=56.06 Aligned_cols=132 Identities=11% Similarity=0.000 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
.-...||......|++.+|..+|++++.- --......+..+++..+..+++..|...+++..+.... ...
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa---~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA---FRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---cCC
Confidence 45667899999999999999999999862 22333456788999999999999999999988764311 122
Q ss_pred hhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 496 ~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
| .....+++++...|++. +|...|+.++..+. + .......+..+.++|+.++|...+..+.+
T Consensus 160 p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 160 P---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred C---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 44677899999999999 99999999987541 1 23344567889999999888876665544
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=98.22 E-value=1.9e-05 Score=62.56 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
++......+..|.-++..|++++|...|+-..-. ++.....+..||.++..+++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3456777888999999999999999999876554 44556678999999999999999999999988753
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.++| ......|.+|...|+.++|...|+.++..
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 2333 33677999999999999999999998873
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.22 E-value=5.3e-05 Score=58.67 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..+...|...++.|+|++|++.|+..... -+.++-...+...++.+|+..|++++|+..+++.+++. +.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence 45899999999999999999999987765 34466677889999999999999999999999988874 88
Q ss_pred cchHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL 233 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~ 233 (581)
+|....+++..|.+++.+.. ...|...|++.+...
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 88888899999999888766 566666666666543
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0005 Score=58.38 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
..+.+.+..++...|.|.-....+.++++.. ++..| .....+|.+..+.|+.+.|..++++..+...+..+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p---~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEP---QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccH---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--
Confidence 3456778888888999999999999887743 23333 345778999999999999999999887665554222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.....+..+.+.+|.-.+++.+|...+.+++.. ++..+.+.++-|.|....|+..+|++.++.++..
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234566778889999999999999999888765 5566788889999999999999999999998876
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=5.8e-05 Score=70.71 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=99.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
+-.++...++++.|+.++++.... .|. +...++.++...++..+|++.+.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445566678999999999886652 232 4456899999999999999999999965 455578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.+...+..+...++++.|+...+++.+. .|....+|..|+.+|...|++++|+..+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888999999999999999999999987 5777899999999999999999999777643
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=98.16 E-value=2.3e-05 Score=62.15 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 193 (581)
....+..++..|..++..|++++|..+|+-..-. ++.+...+..||.++...++|++|+..|..+..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 3466777999999999999999999999876543 66667788999999999999999999999877664
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN 231 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 231 (581)
.++|. ..+..|.+|...|+.+.|+..|+.++.
T Consensus 102 ---~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 ---KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23333 257899999999999999999999887
No 206
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=7.9e-05 Score=69.81 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=99.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 246 (581)
.+...+...++++.|+.+++++... .|.. ...++.++...++..+|+..+.+++.. .|....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-------DPEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-------CCcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 3455566678999999999986543 2443 456889999999999999999999853 233377
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
.+...+..+...++++.|+...+++... .|....+|..|+.+|...|++++|+..+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7888999999999999999999999998 6778899999999999999999999776643
No 207
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.0017 Score=55.93 Aligned_cols=227 Identities=14% Similarity=0.133 Sum_probs=147.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
.+++-....+++++|+..|.+.+.---........+.-.+...++.+|...|++..-.+......+...... .|...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~~ 84 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKIT 84 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhHH
Confidence 456666778899999999988775410000001122345678899999999999877766666555544331 23333
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016 330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (581)
Q Consensus 330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (581)
.....|...+ .....++.-+..+...++...+. .........-..++.++...|+|.+|+......+.-.++.
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-- 158 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-- 158 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence 3333333322 23456777778888877776542 1111122233567888999999999999999888877776
Q ss_pred CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH--HHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
.+.+.....+..-..+|....+..++...+..|-......+-| ....+.. .-|.......+|..|..+|-++++-
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP---pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP---PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC---HHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 5566666777777888999999999988888777665554332 2222222 2245556778999999999999886
Q ss_pred HH
Q 008016 487 RE 488 (581)
Q Consensus 487 ~~ 488 (581)
+.
T Consensus 236 ft 237 (421)
T COG5159 236 FT 237 (421)
T ss_pred cc
Confidence 64
No 208
>PRK11906 transcriptional regulator; Provisional
Probab=98.06 E-value=0.00026 Score=66.15 Aligned_cols=131 Identities=19% Similarity=0.098 Sum_probs=102.9
Q ss_pred HHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHH
Q 008016 207 LHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITI 274 (581)
Q Consensus 207 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~ 274 (581)
+..|......+ ..+.|..+|.+++... +-+|..+.++..++.++... ....+|..+.++++++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 55555554443 3456788888888431 24566778888888877654 2345667777777776
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
++..+.++..+|.+....|+++.|...|++|+.+ +|..+.++...|.+....|+.++|.+.+++
T Consensus 334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5666889999999999999999999999999986 678899999999999999999999999999
Q ss_pred HHHH
Q 008016 355 ALRV 358 (581)
Q Consensus 355 al~~ 358 (581)
++++
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 9986
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.05 E-value=1.9e-05 Score=54.20 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
++..|++++|+..|+++++. .|....+...++.+|...|++++|...++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 36789999999999999987 88889999999999999999999999999876654
No 210
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.05 E-value=1.1e-05 Score=49.10 Aligned_cols=41 Identities=32% Similarity=0.279 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 497 (581)
+.++.++|.+|..+|++++|..++++++.+.+..+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 45789999999999999999999999999999999999984
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00046 Score=63.89 Aligned_cols=319 Identities=11% Similarity=-0.010 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc------
Q 008016 164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY------ 237 (581)
Q Consensus 164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------ 237 (581)
.+..-+..-+..+.++...+.++.+..+-. +...+. ++.--..|++.|..... ...++...+.....
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~----~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGE----SSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS 91 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccc----ccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence 334444455667889999888887766532 221111 23333345555554432 22333222222111
Q ss_pred -CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 238 -GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 238 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+-+.......+++.|.+|+....+..|++.........+... ......+-...-.++....+.++|+.++.-.-++
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~ 168 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI 168 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223345677888889888899999888777666544321 1112223333445566667777777665433322
Q ss_pred HHHH----cCCC----------CchHHH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016 317 YTKV----YGEN----------DGRVGM-----------AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (581)
Q Consensus 317 ~~~~----~~~~----------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (581)
.... .+.. +|..+. ....-...|....+...+..-.+.+..+. .+.
T Consensus 169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-------~~s-- 239 (696)
T KOG2471|consen 169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-------QDS-- 239 (696)
T ss_pred HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-------CCC--
Confidence 2111 1100 111000 01111112222223333333222222221 112
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHh
Q 008016 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKT 448 (581)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~ 448 (581)
...+...+..++..|++.+|.+.+...- +.+...+...|. ....++++|.++.+.|.|.-+..+|.+|++ ...+.
T Consensus 240 -~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 240 -SMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred -cHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 2233556788899999999998876432 222221222333 334568999999999999999999999996 33333
Q ss_pred cCCCC---------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016 449 VGPDD---------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 511 (581)
Q Consensus 449 ~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 511 (581)
..+-. ......+++.|..|...|++-.|.+.|.++...+. .+| ..|..|+.++..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-----~nP---rlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-----RNP---RLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-----cCc---HHHHHHHHHHHH
Confidence 22111 12345788999999999999999999999999873 345 567778877653
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.01 Score=53.84 Aligned_cols=300 Identities=13% Similarity=0.022 Sum_probs=194.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (581)
+..+......|+-..|...-.++-+... ....+-+...-+..-...|+++.|.+-|+.++.. |+
T Consensus 88 LStGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PE 151 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PE 151 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hH
Confidence 3444555667888888887777654421 2222334444566677789999999999986432 44
Q ss_pred HHH-HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 202 LDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 202 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
... -+..|-.--...|..+.|+.+-+++-... |....+....-...+..|+++.|+++.+...... ..+
T Consensus 152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie 221 (531)
T COG3898 152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIE 221 (531)
T ss_pred HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhc
Confidence 321 12222223346799999999999887753 2334555555566778999999999998766542 122
Q ss_pred CCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 281 TESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 281 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
++..+. ...+..-+.... ..+...|...-.++.++ .|+.+..-..-+..++..|+..++-.+++.+-+.
T Consensus 222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 222222 222332333322 34577777777777765 3555556666788899999999999999988764
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
.| ++.+ +.+|....--+.++.-++++-.+. .-.++........+..-..-|++..|..--
T Consensus 293 -------eP-HP~i-------a~lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 293 -------EP-HPDI-------ALLYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred -------CC-ChHH-------HHHHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 23 3332 334444444455566666665542 224556677778888889999999998887
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALY 485 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 485 (581)
+.+..+ .|. ...+..|+.+-... |+-.++..++-+++.
T Consensus 353 eaa~r~--------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 353 EAAARE--------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhhh--------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 777663 222 24667788887765 999999999998876
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.02 E-value=3.9e-05 Score=71.31 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
..|.....++++|.+|...|++++|+..|++++++ .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778899999999999999999999999999997 4555544456899999999999999999999999986
No 214
>PRK11906 transcriptional regulator; Provisional
Probab=97.99 E-value=0.00022 Score=66.54 Aligned_cols=162 Identities=11% Similarity=0.042 Sum_probs=111.1
Q ss_pred HHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CC------hHHHHHHHHHH
Q 008016 121 LFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---GD------LKFVQSLLDMM 188 (581)
Q Consensus 121 l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~------~~~A~~~~~~~ 188 (581)
++-+|......+ ..+.|+.+|.+++.. .+.+|..+.++..++.|++.. |- ..+|....+++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 344554444333 345677777777722 333888999999999988664 22 22333444444
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
.++ ++..+.++..+|.+....|+++.|...|++|+.+ .|..+.+++..|.+....|+.++|.+.+
T Consensus 331 vel-------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 331 SDI-------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred Hhc-------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 433 2555567889999999999999999999999986 3556888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHH-HHHHHHH-HHHHcCCHHHHHHHHHHH
Q 008016 269 HRVITILELNRGTESADLVL-PLFSLGS-LFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 269 ~~al~~~~~~~~~~~~~~~~-~~~~la~-~~~~~g~~~~A~~~~~~a 313 (581)
++++++ +|.... ....+-. .|+ ....++|+.+|-+-
T Consensus 396 ~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 396 DKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 999988 343332 2223333 343 45577777766543
No 215
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00025 Score=57.48 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (581)
+-.-|.-++..|+|++|..-|..|+.++... .......++.+.|.+..+++.++.|+.-..+++++ .|.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt 166 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT 166 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence 4556788899999999999999999987654 22456778899999999999999999999999998 677
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
...++...|.+|.++..+++|++-|.+.++.
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 7888888999999999999999999999876
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.97 E-value=0.022 Score=55.93 Aligned_cols=182 Identities=16% Similarity=0.083 Sum_probs=120.8
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHP 412 (581)
Q Consensus 340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (581)
.-.|+-+.++..+.++.+. .+-..+.. .-.|+........ ....+.|.++++..... .|
T Consensus 199 GF~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP 264 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YP 264 (468)
T ss_pred CcCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CC
Confidence 3568999999999887652 11222221 1112222111211 23455666666665544 35
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492 (581)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 492 (581)
.....+...|.++...|+.++|++.+++++....+. .+-...+++.++.++.-+++|++|..++.+..+.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------ 334 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------ 334 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence 556677888999999999999999999988533222 1222356789999999999999999999988763
Q ss_pred CCChhHHHHHHHHHHHHHHcCCC-------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008016 493 KDSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLTLKK 547 (581)
Q Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 547 (581)
+....+...+..|.++...|+. + +|.+++.++-....+..+...|-...+...
T Consensus 335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK 394 (468)
T PF10300_consen 335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFVIRK 394 (468)
T ss_pred -cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence 2233344456678889999988 7 888899988888777666555544444333
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.96 E-value=5.9e-05 Score=70.17 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
..|.....++++|..|...|++++|+..|++++++ .+++.....+++++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999997 2333333367999999999999999999999999986
No 218
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00013 Score=59.13 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
..+..+-..+..++..|+|++|..-|..+++.++... ......+|.+.|.+++.++.++.|+.-..+++.+.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--- 164 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--- 164 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence 3455688889999999999999999999999876543 45567778899999999999999999999988875
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
|....++...+.+|.+..+|++|+.-|.+.++.
T Consensus 165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 677778888999999999999999999998875
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.94 E-value=0.0094 Score=53.39 Aligned_cols=207 Identities=29% Similarity=0.363 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
.......+..+...+++..+...+...... ...+.....+..++..+...+++..+...+..++... .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------P 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------C
Confidence 456677888899999999999999888764 1245567788889999999999999999998887642 1
Q ss_pred CchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 325 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
.. .......+. ++...|++++|...+.+++.. .+............+..+...+++++|+..+.+++...
T Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 127 DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 11 122233333 899999999999999999552 11111223344556666888999999999999988874
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
... ....+..++..+...+++++|...+..++.. .+.....+..++..+...|.++++...+.++
T Consensus 198 ~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 198 PDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 221 3567888999999999999999999999885 2323445667777777778899999999988
Q ss_pred HHHH
Q 008016 484 LYIR 487 (581)
Q Consensus 484 ~~~~ 487 (581)
+...
T Consensus 263 ~~~~ 266 (291)
T COG0457 263 LELD 266 (291)
T ss_pred HHhC
Confidence 7754
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.93 E-value=0.007 Score=54.24 Aligned_cols=204 Identities=23% Similarity=0.292 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
......+..+...+++..+...+...+.. ...+.....+...+..+...+++..+...+..+......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 127 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL--------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD---- 127 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC----
Confidence 34566777888999999999988888753 116677788889999999999999999999987665311
Q ss_pred cchHHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGS-MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 199 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
+.. .....+. ++...|++++|...+.+++... +............+..+...+++++|+..+.+++...
T Consensus 128 -~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 197 (291)
T COG0457 128 -PDL--AEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN-- 197 (291)
T ss_pred -cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--
Confidence 111 2233334 8899999999999999995521 1012345556666666888999999999999999873
Q ss_pred hcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 278 NRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 278 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
+. ....+..++..+...+++..|...+..++... +.....+..++..+...+.++++...+.+++
T Consensus 198 ------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 198 ------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 23 46778889999999999999999999998863 2234556667777777788999999999988
Q ss_pred HH
Q 008016 357 RV 358 (581)
Q Consensus 357 ~~ 358 (581)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 76
No 221
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=4.2e-05 Score=52.47 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
...|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5689999999999999988 6777888999999999999999999999998864
No 222
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.92 E-value=2.6e-05 Score=47.33 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (581)
+.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 46789999999999999999999999999999999999875
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.92 E-value=7.6e-05 Score=52.05 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=52.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
|..+|...+++++|++.+++++.+ +|.....+...|.++...|++.+|...++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356789999999999999999985 56677788999999999999999999999999754
No 224
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.015 Score=51.65 Aligned_cols=300 Identities=11% Similarity=0.105 Sum_probs=186.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...+.......++++++..+...+..... ...++ ..-.....+|..+...|+..+-..+.+........++.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K 83 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK 83 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence 55566666777788888888887763111 11111 23456778999999999999988888877666544322
Q ss_pred CcchHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
+..+.....+-..+. ..+..+.-+.++..+++...+. ...-.....-..+...|...++|.+|+......+.-.+
T Consensus 84 --akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK 159 (411)
T KOG1463|consen 84 --AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK 159 (411)
T ss_pred --HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333334444444433 3345556677777777765432 11112233445688999999999999999998888777
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
+. ++.+....++..-..+|....+..+|...+..|-......+-+ |.. +..-..-|.++....+|..|..||-++
T Consensus 160 Kl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEA 235 (411)
T KOG1463|consen 160 KL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEA 235 (411)
T ss_pred hc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHH
Confidence 65 3455566677777888999999999998888776655444322 222 222223355666778999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--cCHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVE 433 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~ 433 (581)
.+-+... .++.....++-.+-.+-...+..++--.++..=..+. . ......++...+..+..+ .+|+.
T Consensus 236 fEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y----~g~~i~AmkavAeA~~nRSLkdF~~ 305 (411)
T KOG1463|consen 236 FEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y----AGRDIDAMKAVAEAFGNRSLKDFEK 305 (411)
T ss_pred Hcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c----cCcchHHHHHHHHHhcCCcHHHHHH
Confidence 9876542 3333444444555555566777776555543322221 1 112234556666666443 45666
Q ss_pred HHHHHHHHHH
Q 008016 434 AERLLRICLD 443 (581)
Q Consensus 434 A~~~~~~al~ 443 (581)
|+.-|+.-+.
T Consensus 306 AL~~yk~eL~ 315 (411)
T KOG1463|consen 306 ALADYKKELA 315 (411)
T ss_pred HHHHhHHHHh
Confidence 6666655443
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.013 Score=57.15 Aligned_cols=124 Identities=13% Similarity=0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
.|..++......-.++-|+..|-+.-.. .+++ + ....--...+.+-.--|++++|.+.|-.+-..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 4556666666666667776666554221 1110 0 00001122345555568888888887543211
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
+.+ ..++.+.|++-...++++..- .+.++...-.++.++|..+.....+++|.++|.+.
T Consensus 764 -----DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 -----DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred -----hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 123444555544333332210 01223335566777777777777777777777654
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.85 E-value=0.00012 Score=50.93 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
..+|...+++++|+.++++++.. +|.....+...|.++...|++.+|...++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999998 6677889999999999999999999999999976
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.022 Score=50.68 Aligned_cols=169 Identities=11% Similarity=0.019 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+...+..++..|++.+|....++.++- .|.+.-+....-.+++.+|+...-...+++.+.. ..++.|
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp 172 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLP 172 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCc
Confidence 444555667788888888878887765 5666666666667778888888777777665433 245556
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
-...+....+..+...|-|++|++..++++++. +....+....+.++...|++.++.++..+.-...+.
T Consensus 173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--- 241 (491)
T KOG2610|consen 173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--- 241 (491)
T ss_pred HHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---
Confidence 666666667777888899999999998888863 233566777888888889999888887664433221
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (581)
..-....-|...+.++...+.|+.|++.|.+-+
T Consensus 242 -s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 242 -SWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111223345566778888889999998887643
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.76 E-value=0.05 Score=53.52 Aligned_cols=177 Identities=18% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch---HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
+..-.|+-+.++..+.++.+. .. -..|. ....|+.....+. .....+.|.+++......+ |+
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~-~~---i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~ 265 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS-EN---IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PN 265 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc-CC---cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CC
Confidence 344568999999999887551 11 01111 1111222222222 2345667777777766653 33
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
.. -.+...|+++...|+.++|++.+++++...... ..-...++..++.++..+++|++|..++.+..+.
T Consensus 266 s~---lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---- 334 (468)
T PF10300_consen 266 SA---LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---- 334 (468)
T ss_pred cH---HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----
Confidence 33 345778999999999999999999988543222 1223457889999999999999999999998773
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChh
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSLP 497 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~ 497 (581)
+.-..+...+..|.++...|+. ++|.+++.++-....+..|...|.
T Consensus 335 ---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~ 387 (468)
T PF10300_consen 335 ---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPL 387 (468)
T ss_pred ---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 2223344556678889999999 888899998888877766655553
No 229
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.76 E-value=0.007 Score=44.60 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=86.2
Q ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
..+|..|+. -...-|-|++|..-+.+++++.+.+..+... ..+.++..|+..+..+|+|++++...++++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 344444433 3456789999999999999998776433221 2567788899999999999999999999999887
Q ss_pred hhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 361 DSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 361 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
....+..+. ..+..+.++.+..+...|+.++|+..|+.+-+...+..
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERK 134 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERK 134 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Confidence 754444442 33445557889999999999999999999988765543
No 230
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.73 E-value=0.0002 Score=63.03 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
.-..|.-|+++|.|++|+.+|.+++.. .|.....+.+.+..|.+..+|..|+.-+..++.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 345688999999999999999999987 5667788899999999999999999999999987 335
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+..+|...+..-..+|+..+|.+-++.++++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 6788999999999999999999999999986
No 231
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.70 E-value=0.052 Score=51.85 Aligned_cols=284 Identities=15% Similarity=0.086 Sum_probs=152.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM 330 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~ 330 (581)
+.+....|+|+.-.++ +... ..+.+ .....-+......|+++++..+.+++.............. ...
T Consensus 5 ~eaaWrl~~Wd~l~~~----~~~~----~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEY----LSQS----NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred HHHHHhcCChhhHHHH----Hhhc----cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4566778888873222 2221 11112 3333344555588999999999999887654432221111 122
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC-
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKG- 408 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~- 408 (581)
.+..+..+ ....+.+++..+...... ..... ..+-..+. +......-....+..+......+.
T Consensus 74 ~y~~l~~l-q~L~Elee~~~~~~~~~~----------~~~~~----~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~ 138 (352)
T PF02259_consen 74 AYPSLVKL-QQLVELEEIIELKSNLSQ----------NPQDL----KSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSL 138 (352)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHHhhcc----------cHHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence 22222211 122233333333311100 00000 01111111 111112223333333333333322
Q ss_pred -CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-H
Q 008016 409 -KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-I 486 (581)
Q Consensus 409 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~ 486 (581)
.........+...+.+..+.|+++.|...+.++..... ........+....+.++...|+..+|+..++..+. .
T Consensus 139 ~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 139 ILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 12345667889999999999999999999988766311 11111334566779999999999999999998887 2
Q ss_pred HHHHc-------------------------CCCChhHHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHHHHhcC
Q 008016 487 REIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 487 ~~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
..... .......+.++..+|...... +..+ ++...|.++.++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~~----- 288 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKLD----- 288 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHhC-----
Confidence 22110 011123455666677777666 5666 7888888887753
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCh-----------------hhhHHHHHHHHHHHHH
Q 008016 536 SESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK 574 (581)
Q Consensus 536 ~~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~l~~~ 574 (581)
|....++..+|..+.+.-+. ..|+..|-+++..+++
T Consensus 289 ---~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 289 ---PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ---hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 55556677777665554221 2366777777776655
No 232
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.09 Score=54.10 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.+|..+|.+....|...+|++.|-++ ++ ...+.....+..+.|.|++-++++.-+.+-.+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------ 1165 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------ 1165 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------
Confidence 35777888888888888888887765 22 234556667777788888888887766554322
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
| .+-..|...|.+.++..+-++++ .|+++.. ....|.-++..|.|+.|.-+|...-.
T Consensus 1166 ~---~id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~vSN------ 1222 (1666)
T KOG0985|consen 1166 P---YIDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNVSN------ 1222 (1666)
T ss_pred c---cchHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHhhh------
Confidence 1 11223445566666665544332 1233222 23456667777777777666654221
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--H---------------HhcCCCChHHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT--E---------------KYKGKEHPSFVTHLLNLAASYS 426 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~ 426 (581)
+..|+..+...|+|..|....++|-... + +..|-+-...+.-+-.+...|.
T Consensus 1223 ------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1223 ------------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence 2456667777777777777666653221 1 0112111122334556777888
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
..|-+++-+.+++.++.+-+. ..-.+..||.+|.+ =++++-.+++
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsk-ykp~km~EHl 1335 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSK-YKPEKMMEHL 1335 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 899999988888887764221 12244566655543 3344443333
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.0074 Score=49.29 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (581)
..+...++..+...|++++|+..++.++.. ..|......+-.+|+.+...+|++++|+..+....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------- 153 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------- 153 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------
Confidence 344567888999999999999999998864 33444445566889999999999999998877532
Q ss_pred CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
++..........|+++...|+-++|+..|++++..
T Consensus 154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 22334445567899999999999999999999985
No 234
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.078 Score=52.13 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-----DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
..++..+..++......-.++-|+..|-+..... +.++.-+.. -...+.+-.--|+|++|.+.|-.+-..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~drr- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADRR- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccchh-
Confidence 3456677777777777777777777776542221 111100000 012233334458999999888765221
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
+.+ ...+.+.|+|-.-.++++.. ..+.++...-.++.++|..+..+..+++|.++|.+.
T Consensus 764 ---------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 ---------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ---------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 23455667766554444321 012234455678889999999999999999888765
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (581)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (581)
-.. .++..+++...+|++-..+... ++.+++.+ -.+|..+...|--++|.
T Consensus 823 ~~~----------------e~~~ecly~le~f~~LE~la~~----------Lpe~s~ll----p~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 823 GDT----------------ENQIECLYRLELFGELEVLART----------LPEDSELL----PVMADMFTSVGMCDQAV 872 (1189)
T ss_pred cch----------------HhHHHHHHHHHhhhhHHHHHHh----------cCcccchH----HHHHHHHHhhchHHHHH
Confidence 322 2344555555555543332221 23334333 45777788888888887
Q ss_pred HHHHH
Q 008016 394 ELLEE 398 (581)
Q Consensus 394 ~~~~~ 398 (581)
+.|-+
T Consensus 873 ~a~Lr 877 (1189)
T KOG2041|consen 873 EAYLR 877 (1189)
T ss_pred HHHHh
Confidence 76644
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.63 E-value=0.029 Score=53.01 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=93.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC---------
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--------- 325 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------- 325 (581)
..+..+...-++.-++|+++ +|+.+.+|..|+.- ......+|+++++++++..+..++.+.
T Consensus 178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 34456777778888888888 56667777666542 234478899999999988877655331
Q ss_pred --------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 326 --------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 326 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
.....+-..+|.+..+.|+.++|++.++..++.. | ......+..+|..++...+.+.++..++.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0124456789999999999999999999988752 2 22235577999999999999999998887
Q ss_pred H
Q 008016 398 E 398 (581)
Q Consensus 398 ~ 398 (581)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 6
No 236
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.037 Score=48.02 Aligned_cols=228 Identities=11% Similarity=0.115 Sum_probs=150.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (581)
...+....+..++++|+..|...+..-... ......+...+...++..|...|++..-.+............ ..|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f--tk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF--TKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh--cchh
Confidence 456777788899999999998887531000 000123345567889999999999988877776655544332 2244
Q ss_pred HHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
...+...+-..+ .....++.-+..+...++...+. ...-.....-..++..+++.|.|.+|+......+.-.++.
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-- 158 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-- 158 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence 444444443332 23456677777777777665432 0111223344567888999999999999999888877665
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM--CSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.+.+....++..-..+|....+..++...+..|.......+ .|....+. ..-|...+...+|..|..+|-++++-
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 45666777777778899999999998888877766554443 23322222 22355667788999999999999887
Q ss_pred HH
Q 008016 359 IK 360 (581)
Q Consensus 359 ~~ 360 (581)
+.
T Consensus 236 ft 237 (421)
T COG5159 236 FT 237 (421)
T ss_pred cc
Confidence 54
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.60 E-value=0.054 Score=50.36 Aligned_cols=204 Identities=13% Similarity=0.146 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 008016 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI 298 (581)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 298 (581)
+..+.....+.+...+...+........+..++-..|....+|+.-+++.+..-.+ ...+.+....+....|.++.
T Consensus 115 ~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALn 190 (374)
T PF13281_consen 115 YSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALN 190 (374)
T ss_pred HhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHh
Confidence 33334444444444444333222233455667777899999999888887765443 11123344556677788888
Q ss_pred H---cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCC
Q 008016 299 K---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMS 366 (581)
Q Consensus 299 ~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~ 366 (581)
+ .|+.++|+..+..++.. .......++..+|.+|-.. ...++|+..|.++.++ .
T Consensus 191 Rrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-------~ 256 (374)
T PF13281_consen 191 RRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-------E 256 (374)
T ss_pred hcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-------C
Confidence 8 89999999999887553 3344556777788877532 2356777777777665 2
Q ss_pred CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
++ .. .-.|++.++...|...+...-+++.........| .+.......+..++.+..-.|++++|.+.++++.
T Consensus 257 ~~--~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 257 PD--YY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cc--cc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21 11 1256777777777655444333333311111111 1122223345567777888999999999999998
Q ss_pred HH
Q 008016 443 DI 444 (581)
Q Consensus 443 ~~ 444 (581)
..
T Consensus 333 ~l 334 (374)
T PF13281_consen 333 KL 334 (374)
T ss_pred hc
Confidence 74
No 238
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.59 E-value=0.00028 Score=62.18 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (581)
-..|.-|+.+|+|++|+.+|.+++... |.....+.+.|..|.++.+|..|+.-+..|+.+ +...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence 346778999999999999999998763 445567888999999999999999999999986 3445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..+|...+.+-..+|+..+|.+-++.++++-
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 6788889999999999999999999998854
No 239
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.58 E-value=0.0029 Score=54.27 Aligned_cols=100 Identities=24% Similarity=0.217 Sum_probs=82.3
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-----ChHHH
Q 008016 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSFV 415 (581)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 415 (581)
....+++|++.|.-|+-...- .+.++...+.++..+|.+|...|+.+....++++|+..+.+.+... ..+..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 445788999999988877664 3456667788899999999999999988889999988887765332 33456
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
..++.+|.+..+.|++++|..+|.+++.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 7888999999999999999999999987
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.031 Score=51.93 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 008016 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY 213 (581)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (581)
+..+.+...+.+...+..++ ......+.+...+-.+|....+|+.-+.+.+.+..+-.. +-+....+....|.++
T Consensus 115 ~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 115 YSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFAL 189 (374)
T ss_pred HhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHH
Confidence 33344555555555555442 112334556667777899999999999998887665211 1122333455677777
Q ss_pred Hh---ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhcCC
Q 008016 214 ST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 214 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
.+ .|+.++|+..+..++... .....+++..+|.+|-.. ...++|+..|.++.++.
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------ 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence 77 899999999998875532 222345666777777543 24566777777766652
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
++ ...-.|++.++...|...+...-.++.........+ .+.......+..++.+..-.|++++|...+++++.
T Consensus 257 --~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 257 --PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred --cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 21 223345666777777654444333333311111111 11222334455677788889999999999999987
Q ss_pred H
Q 008016 358 V 358 (581)
Q Consensus 358 ~ 358 (581)
.
T Consensus 334 l 334 (374)
T PF13281_consen 334 L 334 (374)
T ss_pred c
Confidence 6
No 241
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.55 E-value=0.018 Score=42.56 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=85.0
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 245 VTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 245 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
+.+|..|+. -....|-|++|...+++++++.+.+...... -.+.++..|+..+...|+|++++..-++++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 444544444 3455689999999999999998776443321 2356788899999999999999999999998877
Q ss_pred HHcCCCCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 319 KVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 319 ~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+. |+-+.+ .+.+..+.+..+...|+.++|+..|+.+-++..+.
T Consensus 87 RR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 87 RR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 65 222222 45566788899999999999999999999987654
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.011 Score=48.37 Aligned_cols=100 Identities=18% Similarity=0.054 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD 453 (581)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (581)
.....++..+...|++++|+..++.++... .+......+-.+||.+...+|++++|...+....+ +
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence 344678889999999999999999988643 22233345667899999999999999988776533 3
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..........|.++...|+-++|+..|+++++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344455677999999999999999999998853
No 243
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.059 Score=48.09 Aligned_cols=297 Identities=11% Similarity=0.015 Sum_probs=178.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc---hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP---LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (581)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (581)
+.......++++++..+............+.. ..-.....+|..+...|+..+-.......-..+... ..+..+
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~Kakaa 87 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAA 87 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHH
Confidence 33344455667777777776664322111111 123456789999999999988777776665555443 223334
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 246 TSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 246 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
.....+...... -+..+.-+.++..+++...+.. ........-..+..+|...++|.+|+......+.-.++. .+
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DD 163 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DD 163 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--cc
Confidence 444444444433 3455566777777777654320 011122334568899999999999999999998888876 44
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
.+........=...|....+..+|...+..|....... +.+ +...+..=..-|.++....+|.-|..+|-+|.+-+.
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai-Ycp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI-YCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc-ccC--HHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 45555666666778888889999988887776554332 111 222222222335556666899999999999988765
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--CChHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL--NRDKEAEKLVLE 482 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~ 482 (581)
.. .+++....++..+-.+-...+..++--.++..=..+. . .. ....++..++..+... .+|+.|..-|..
T Consensus 241 s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 241 SL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred cc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cC-cchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 54 3444555555555555566677776555443322211 1 12 2235667777776543 455666655554
Q ss_pred H
Q 008016 483 A 483 (581)
Q Consensus 483 a 483 (581)
-
T Consensus 313 e 313 (411)
T KOG1463|consen 313 E 313 (411)
T ss_pred H
Confidence 3
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.0048 Score=50.01 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL 185 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 185 (581)
+..+...+......|+...++..+++++..++.-+-.+... .....++..++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34456667777888899999999999988775432111111 122345566788888999999999999
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
++++... |..-.++..+..+|...|+..+|+..|++......+..|..+
T Consensus 86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 9988775 555667888999999999999999999999988876555443
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.51 E-value=0.006 Score=49.44 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=77.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
.|......|+.+.++..+++++.+++..+-++. .....+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 344445566777777777777776543221110 134556777888899999999999999999998
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
+|..-..+..+..+|...|+..+|...|++......+.+|..+
T Consensus 92 --------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 92 --------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp --------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred --------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 6777889999999999999999999999999998887666543
No 246
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00098 Score=55.83 Aligned_cols=103 Identities=16% Similarity=0.111 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
.+..+-..+..++....|+.|++.|.+++.+ +|..+..+.+.+.|+++..+++.+..-..+++++.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---- 74 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---- 74 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC----
Confidence 3455777888889999999999999999987 88888889999999999999999999998888775
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (581)
|..+...+.+|........|++|+..++++..+.+..
T Consensus 75 ---~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 75 ---PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ---hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 7778889999999999999999999999999887664
No 247
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.48 E-value=0.0023 Score=54.89 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=79.8
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHH
Q 008016 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLL 249 (581)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~ 249 (581)
...+++|+..|.-++-.....+.++...+.++..+|++|...|+.+....++++|++...+.+... ..+...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 446667777777766666555666667788899999999999999988899999988877664332 224567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
.+|.++.+.|++++|..+|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999998875
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.45 E-value=0.00029 Score=40.65 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 544 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
++..||.+|.++|++++|+++|++++.+.++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 467899999999999999999999998877654
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.41 E-value=0.066 Score=54.06 Aligned_cols=280 Identities=13% Similarity=0.103 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHhh-cCCCcchHHHHHH
Q 008016 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI-----GDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILL 207 (581)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 207 (581)
...|..+++.+.+ ..+......+|.+|..- .|.+.|+.+++.+...... .... ...+.+
T Consensus 228 ~~~a~~~~~~~a~------------~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~ 292 (552)
T KOG1550|consen 228 LSEAFKYYREAAK------------LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQY 292 (552)
T ss_pred hhHHHHHHHHHHh------------hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCcccc
Confidence 4567777776653 34556677777777653 6899999999987662100 0001 222567
Q ss_pred HHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 008016 208 HMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 208 ~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~ 279 (581)
.+|.+|.... ++..|..+|.++-.. + ...+.+.+|.++.... ++..|.++|..|...
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----- 357 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------G---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----- 357 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhc-------C---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-----
Confidence 8899988743 677799999888664 1 2456777888887665 678999999988764
Q ss_pred CCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKK 354 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 354 (581)
....+...++.+|.. .-+...|..++.++.+. ++ +.+...++..+..- ++++.+.-.+..
T Consensus 358 -----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 358 -----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GN---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred -----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cC---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 125677778888764 35788999999998774 12 22333344433322 777777776666
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--
Q 008016 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-- 428 (581)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 428 (581)
..+..-+. .......+.......... .+...+...+.++-.. ....+...||++|..-
T Consensus 423 ~a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g 486 (552)
T KOG1550|consen 423 LAELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLG 486 (552)
T ss_pred HHHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCC
Confidence 55542221 111111111111011111 1334444444443221 2234666778777653
Q ss_pred --cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 008016 429 --KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL---NRDKEAEKLVLEALY 485 (581)
Q Consensus 429 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~ 485 (581)
.+++.|...|..+... . .....++|.++..- .....|.+++.++.+
T Consensus 487 ~~~d~~~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 487 TGRDPEKAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred CCCChHHHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 4689999999988762 1 56788999888752 126788888887765
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.41 E-value=0.038 Score=52.28 Aligned_cols=134 Identities=17% Similarity=0.117 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC------
Q 008016 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM------ 365 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 365 (581)
.+..-..+..+...-++.-.+|+++ +|+.+.+|..|+. ....-..+|.++++++++..+.....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 3444456677888888888899987 4566677776663 22345788999999998876654111
Q ss_pred -CC--------CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 366 -SL--------DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 366 -~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
++ +......+...+|.+..+.|+.++|++.+++.++.. ...+...+..+|..++...+.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 11 111234556789999999999999999999987653 122456688999999999999999988
Q ss_pred HHHHH
Q 008016 437 LLRIC 441 (581)
Q Consensus 437 ~~~~a 441 (581)
++.+-
T Consensus 317 lL~kY 321 (539)
T PF04184_consen 317 LLAKY 321 (539)
T ss_pred HHHHh
Confidence 88774
No 251
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0019 Score=54.24 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (581)
..-|.-+....+|+.|+..|.+++.+ +|..+..+.+-+.++.+..+++.+..-..+++++ .|+.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence 33455566667789999999998876 4667778899999999999999999999999985 5778
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (581)
+...+.+|........+++|+..+.++..+.+..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999998877654
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.37 E-value=0.14 Score=48.78 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-ITE 404 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~ 404 (581)
......+...+.+..+.|+++.|...+.++...... .......+....+.++...|+..+|+..++..+. ...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 456788899999999999999999999987765221 1111233446678899999999999999998887 222
Q ss_pred Hhc-------------------------CCCChHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 405 KYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPDD 453 (581)
Q Consensus 405 ~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~ 453 (581)
... .......+.++..+|...... +..+++...|+++..+ +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~ 288 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------D 288 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------C
Confidence 110 011233456777777777777 8888899999999885 4
Q ss_pred cchHHHHHHHHHHHHH
Q 008016 454 QSISFPMLHLGITLYH 469 (581)
Q Consensus 454 ~~~~~~~~~la~~~~~ 469 (581)
|....++..+|..+..
T Consensus 289 ~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 289 PSWEKAWHSWALFNDK 304 (352)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5555677777776654
No 253
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0062 Score=51.40 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC---CCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (581)
..++..-|+-++..|+|.+|...|+.|+...+.+.- +..| .....+.+.+.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999987766532 2222 234567889999999999999999999988
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.. +|....+++..|......=+.++|..-|.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 86 6778999999999999999999999999999986
No 254
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0037 Score=52.67 Aligned_cols=113 Identities=17% Similarity=0.037 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC---ChhH-------HHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD---SLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~-------~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
.++..-|+-++..|+|.+|...|+.|+...+.+.-.. .|.. ...+.+.+.++...|++- ++++.....+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y-evleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY-EVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-HHHHHHHHHH
Confidence 3566778889999999999999999998776553322 3322 234678889999999888 7777777776
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016 528 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 579 (581)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 579 (581)
. .+|.+..+++..|.+....=+..+|..-|.+++++.+.....+
T Consensus 258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 5 4688899999999999999999999999999999988877654
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.13 Score=45.92 Aligned_cols=165 Identities=11% Similarity=-0.057 Sum_probs=122.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (581)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (581)
+......|++.+|-...+++++.. |...-++...-.+++..|+...-...+++.+... .++.|-...+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence 334456788888777777765443 5544455666677888999998888888877653 34556667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (581)
..++..+...|-|++|++..++++++ ++....+...++.++...|++.++.++..+.-...+.. ....
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mla 246 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLA 246 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHH
Confidence 78888999999999999999999988 55567788889999999999999999887754433211 1122
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
...|-..|..+...+.|+.|++.|..-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 3345567888888899999999998743
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.32 Score=49.65 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=117.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
-+......+++.+|+....+.++. +|....+...-|....++|+.++|..+++..... +.+ ..
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~---D~ 77 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGT---DD 77 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCC---ch
Confidence 344556788999999999888876 7777788888889999999999999777664322 222 23
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.++..+-.+|...|++++|..+|++++... |. ...+..+-.+|.+.+.|.+-.+. ++++++.. +..
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~--pk~ 143 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF--PKR 143 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC--Ccc
Confidence 456778889999999999999999998752 22 34455566677777777654433 33333321 223
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHcCCC-Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAES--VFSRILKIYTKVYGEN-DGR-VGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
+.. .|..+..+.......+.... ..--+-....+.+... ... .+.. ...-.++..+|++++|.+.+..
T Consensus 144 ~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 144 AYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred cch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHH
Confidence 322 22233333333333333332 0001111111221111 111 1222 1223456678999999998843
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00049 Score=39.19 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
.++..+|.+|..+|++++|+..|++++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999998765
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.16 E-value=0.033 Score=46.40 Aligned_cols=111 Identities=15% Similarity=0.088 Sum_probs=87.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
......++..+|..|...|+.++|.+.|.++.+.. .........+.++..+....|++.....+..++-.....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~- 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK- 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence 45567789999999999999999999999987753 223456777888999999999999999999999888765
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
+.+..........-|..+...++|.+|-..|-.+...
T Consensus 106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 3344444445555677778889999999888776543
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.14 E-value=0.038 Score=46.02 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=84.6
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
......++..+|..|.+.|+.++|.+.|.++.+.. ........++.++..+....|++.....+..++-....
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999987753 33455567778899999999999999999999988765
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.. .+..........-|..+...++|.+|-+.|-.+..
T Consensus 105 ~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 105 KG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred cc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 52 22222223334456667778999999998877754
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.088 Score=46.43 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
..+..+......|++.+|...|..+++. .++...+...++.+|...|+.+.|..++...-....
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------ 199 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------ 199 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------
Confidence 3667788899999999999999999987 666688899999999999999999999877422210
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
......+......+.+.....+....-+++ . .+|+...+-+.+|..+...|+.++|.+.+-..+..
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011111111112223333333322222221 1 13444677788999999999999999888665554
No 261
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.43 Score=49.47 Aligned_cols=213 Identities=15% Similarity=0.046 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+...|.+-.+.|...+|++.|-++ +++..+........+.|.|++-+.++..+.+..+. |
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika---------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~ 1166 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA---------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----P 1166 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc---------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----c
Confidence 455566666677777777666543 23445666777778888888888888887765432 2
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
.. -..+-.+|.+.++..+-.++. .|++... ....|.-++..|.|+.|.-+|...
T Consensus 1167 ~i---d~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1167 YI---DSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred cc---hHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 21 123344555666655443332 2333221 234566677777777766555432
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H---------------HHcCCCCchHHHHHHHHHHHHHHCC
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY--T---------------KVYGENDGRVGMAMCSLAHAKCANG 343 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~~~g 343 (581)
.-+..|+..+...|+|..|...-++|-... + +..|-+-.-.+.-+-.+...|...|
T Consensus 1221 -------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1221 -------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcC
Confidence 224455666666677777666665553220 0 0111111112334556777888899
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
-+++-+.+++.++.+-+. + ..++..||.+|.+ -++++-.++++
T Consensus 1294 yFeElIsl~Ea~LGLERA-------H---MgmfTELaiLYsk-ykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLERA-------H---MGMFTELAILYSK-YKPEKMMEHLK 1336 (1666)
T ss_pred cHHHHHHHHHhhhchhHH-------H---HHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999998888888765332 1 2344667766654 34555555443
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.0018 Score=39.41 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (581)
.++..+|..|...|++++|++.|+++++. .|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999998 5666777777664
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.07 E-value=0.002 Score=37.12 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
++.+||.+|...|++++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999999877554
No 264
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.05 E-value=0.47 Score=48.51 Aligned_cols=229 Identities=17% Similarity=0.103 Sum_probs=128.6
Q ss_pred hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 008016 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 294 (581)
..+++.+|.....+.++. +|....+...-|-+..++|+.++|..+++. +... .+..-.++..+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-------~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-------KGTDDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-------CCCchHHHHHHH
Confidence 567888888888877763 344445555567788999999999965543 3321 222456677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 008016 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374 (581)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 374 (581)
.+|..+|++++|..+|+++...+ |. -..+..+-.+|.+.+.|.+=.+. ++++++. . |..+.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yy-- 146 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYY-- 146 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-Ccccch--
Confidence 99999999999999999998752 33 34445555667777766553332 3333332 2 333322
Q ss_pred HHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 375 MRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
.|..+..+.......++... +.++..+..-+..| .-...+... ..-.++..+|++++|.+.+..-+.- ..
T Consensus 147 fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~--~l- 221 (932)
T KOG2053|consen 147 FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAITLAE--KL- 221 (932)
T ss_pred HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHH--hc-
Confidence 23334444444444444333 11111111111101 111112221 2224567789999999988543331 11
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
.+........-...+...+++.+-.++..+.+.
T Consensus 222 ---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 222 ---TSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred ---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 111122223345566777888887777776665
No 265
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.05 E-value=0.012 Score=43.12 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=61.0
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016 425 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 503 (581)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (581)
....|++.+|.+.+.+..+......... ......++.++|.++...|++++|...+++++++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3567999999999999999876653322 11345577889999999999999999999999999876 44444444555
Q ss_pred HHHHH
Q 008016 504 CLVSI 508 (581)
Q Consensus 504 ~la~~ 508 (581)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55444
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.03 E-value=0.47 Score=48.08 Aligned_cols=280 Identities=16% Similarity=0.057 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (581)
Q Consensus 178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (581)
...|..+++.+.+.- .......+|.+|.. ..+.+.|+.+++.+.....+..... ...+.+.+|
T Consensus 228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHH
Confidence 456666666654431 22345666776653 4789999999999877311110001 234677889
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCC
Q 008016 253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
.+|.... ++..|..++.++-+. ....+.+.+|.++.... +...|.++|..|...
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------- 357 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------- 357 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------
Confidence 9998753 678899999888765 23456788888887765 567899999988763
Q ss_pred CchHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCAN----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC 399 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 399 (581)
....+...++.+|..- -+...|..+++++.+. + ++. +...++..+..- ++++.+...+...
T Consensus 358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g--~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------G--NPS---AAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------c--Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence 3346677888877643 4789999999998876 1 111 112233333222 7777777666555
Q ss_pred HHHHHHhcCCCChHHHHHH-HHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc----
Q 008016 400 LLITEKYKGKEHPSFVTHL-LNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL---- 470 (581)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~-~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---- 470 (581)
.+...+. +.....+ .......... .+...+...+.++.. .....+...||.+|..-
T Consensus 424 a~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 424 AELGYEV-----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred HHhhhhH-----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCC
Confidence 4443221 1111111 1111111111 245556666666543 22334667788887754
Q ss_pred CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHH
Q 008016 471 NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLKRVLR 528 (581)
Q Consensus 471 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~~A~~~~~~a~~ 528 (581)
.+++.|...|..+.... +....++|.++..--- .. .|..++.++.+
T Consensus 489 ~d~~~a~~~y~~a~~~~-----------~~~~~nlg~~~e~g~g~~~~~-~a~~~~~~~~~ 537 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG-----------AQALFNLGYMHEHGEGIKVLH-LAKRYYDQASE 537 (552)
T ss_pred CChHHHHHHHHHHHHhh-----------hHHHhhhhhHHhcCcCcchhH-HHHHHHHHHHh
Confidence 45889999998885521 5778889988864221 24 66667766654
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.98 E-value=0.00083 Score=38.21 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
.++..+|.++..+|++++|++.|++++.+.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56889999999999999999999999998764
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.97 E-value=0.0031 Score=38.36 Aligned_cols=41 Identities=37% Similarity=0.330 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (581)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (581)
++..+|..|...|++++|++.|+++++. +|+...++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 5778999999999999999999999995 5666677777764
No 269
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.022 Score=50.58 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
...+.-+-.-|.-|++..+|..|+..|.+.+..- .++....+..|.+.+.+....|+|..|+.-..+++.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3466667778999999999999999999998752 3344567888999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.|....++..-+.++....++.+|..+.+..+.+.
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 67788899999999999999999999998887653
No 270
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.91 E-value=0.021 Score=41.85 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (581)
....|++.+|++.+.+..+......... ......+..++|.++...|++++|...+++++++.++. .+......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3468999999999999998876542222 12355678889999999999999999999999999886 33334444444
Q ss_pred HHHH
Q 008016 334 SLAH 337 (581)
Q Consensus 334 ~la~ 337 (581)
.+..
T Consensus 86 ~~~~ 89 (94)
T PF12862_consen 86 WLAN 89 (94)
T ss_pred HHHH
Confidence 4443
No 271
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.4 Score=47.00 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=104.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
..++..+...|+|.+|.+.|.+.-...+.+ .-..-.-.+..+.-+...|..++-..+.++-.+..... ..|.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAl----EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePk- 707 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRAL----EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPK- 707 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHH----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcH-
Confidence 346777888899999998887532211100 00001123445556666666666555555444433322 1222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESV------FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
.-|.++...|+.++|+.. .+-++++.++. +......+..++..+.....+.-|.+.|.+.-+.
T Consensus 708 -----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-- 776 (1081)
T KOG1538|consen 708 -----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-- 776 (1081)
T ss_pred -----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH--
Confidence 236677888998888764 34455555443 2223344555565566666666676666654322
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
..+..++...+++++|..+.++--+. ...++.-.|..+....++++|.+.|.+
T Consensus 777 ----------------ksiVqlHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 777 ----------------KSLVQLHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ----------------HHHhhheeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 23445677788888887765542211 122455556666666667766666655
Q ss_pred H
Q 008016 441 C 441 (581)
Q Consensus 441 a 441 (581)
|
T Consensus 830 A 830 (1081)
T KOG1538|consen 830 A 830 (1081)
T ss_pred h
Confidence 4
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.88 E-value=0.0012 Score=37.36 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 008016 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307 (581)
Q Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 307 (581)
|++++++ +|....+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778877 7888999999999999999999986
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.017 Score=51.34 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (581)
..+..+-.-|.-|++..+|..|...|.+++.. ..+++...+..|.|.|.+....|+|..|+.-..+++.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 36666777889999999999999999999886 35677777889999999999999999999999998876
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
.|....+++.=|.++....++.+|..+.+..+.+.
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46677888889999999999999999998887654
No 274
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.028 Score=51.15 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
+|..+.....+.+..+.|...|++|.. .......+|...|.+... .++.+.|.+.|+.+++.+ +.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 455566677777779999999999964 223344577788888666 566666999999999876 344
Q ss_pred hhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 496 ~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
+ ..+......+...|+.+ .|..+|++++... +.......++......-.+.|+.+....+.+++.++.++
T Consensus 70 ~---~~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 P---DFWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp H---HHHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred H---HHHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 4 44555667778889888 9999999887631 111114567778888889999999999999998887654
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.76 E-value=0.0049 Score=34.93 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+.++.++|.+|..+|++++|+..|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999997
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.74 E-value=0.0014 Score=37.03 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 008016 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182 (581)
Q Consensus 141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 182 (581)
|+++++. +|..+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6677777 8999999999999999999999986
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.60 E-value=0.0038 Score=35.37 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
.++..+|.+|...|++++|...|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688999999999999999999999999876
No 278
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.59 E-value=0.019 Score=46.42 Aligned_cols=92 Identities=10% Similarity=0.127 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (581)
Q Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (581)
|+.|.+.++..... +|.+++.+++-|.++..+.++ .++..+++.++..++..-.-+|....+++.+|
T Consensus 7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34555555555544 788888999888888776544 34555555554444332233377777889999
Q ss_pred HHHHhcc----CHHHHHHHHHHHHHHHHH
Q 008016 211 SMYSTLE----NYEKSMLVYQRVINVLES 235 (581)
Q Consensus 211 ~~~~~~g----~~~~A~~~~~~al~~~~~ 235 (581)
.+|...+ +..+|..+|+++....++
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9887654 344566666666555443
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.55 E-value=0.0068 Score=34.30 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
.+++.+|.++...|++++|+.+|++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999999863
No 280
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.52 E-value=0.025 Score=45.76 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 008016 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (581)
|+.|.+.++..... +|.....+++-|..+..+.++ .++.++++.++..++..+. -+|....++.++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 34455555544443 566677778878777766544 4465666666655544321 15677788889999
Q ss_pred HHHHCC----CHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016 338 AKCANG----NAEEAVELYKKALRVIKDSNYMSLDDS 370 (581)
Q Consensus 338 ~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (581)
+|...+ +..+|..+|+++...+++.....|++.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 887654 455677777777776655422344433
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.078 Score=48.28 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
+|..+.....+.+..+.|..+|.+|++. ......+|...|.+... .++.+.|..+|+.+++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~------- 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP------- 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-------
Confidence 3555566666667789999999998632 22334667778888666 5666669999999998752
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
.....+......+...|+.+.|..+|++++... +.......+|......-...|+.+....+.+++.+..
T Consensus 68 -~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 68 -SDPDFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 223444555567788999999999999998752 1122134566777778888899999998888877764
No 282
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.97 Score=43.65 Aligned_cols=244 Identities=14% Similarity=0.072 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
+.....-+..+...|+.+.|+..++.+++...+ .....+++.+|.++..+.+|..|-..+....+..
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des------- 333 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES------- 333 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------
Confidence 334566677778888888888888888772211 2345667888999999999999998888776652
Q ss_pred ChhhHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFI--------KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (581)
+...+..-+..|.++. ..|+-++|..+++...+..... +.+.|.... ..++
T Consensus 334 dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f--------------------~~RK 392 (546)
T KOG3783|consen 334 DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKF--------------------IVRK 392 (546)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHH--------------------HHHH
Confidence 1111221222223332 2345666666665555544332 122221111 1111
Q ss_pred HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHH
Q 008016 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432 (581)
Q Consensus 355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 432 (581)
+-+..... ..++.... ..-+..++.++.... ..++.. ++.......--.+..+..-.+..+|.++...|+..
T Consensus 393 verf~~~~-~~~~~~~l-a~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~ 466 (546)
T KOG3783|consen 393 VERFVKRG-PLNASILL-ASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSE 466 (546)
T ss_pred HHHHhccc-cccccccc-cchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHH
Confidence 11111110 00000000 001122333332221 122222 22111111111234445556677899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 008016 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR 487 (581)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 487 (581)
.|..+|...++- ......+..-...+++.+|..+..+|. ..++..++.+|-+..
T Consensus 467 ~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 467 VAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 999999988865 222233444566789999999999998 999999999997643
No 283
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.33 E-value=0.089 Score=35.89 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
...-+..+..++...+.++|+..+.++++. ..+.++...++-.+..+|...|+|.+.+.+..+-+.+...+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677888888999999999999999886 44477788888999999999999999999887766666543
No 284
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=1.1 Score=44.11 Aligned_cols=149 Identities=22% Similarity=0.200 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 292 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
.+|.++...|++.+|.++|.+. ++++. -.-+...+.-+...|..++-..+.++-.+.....
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--- 703 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--- 703 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence 4678888899999999988753 33321 1224456667777788777777776655554432
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
..|. .-|.++...|+.++|+.+. +-++++..+. +......+..++..+.....+.-|.+.|+
T Consensus 704 --kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 704 --KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred --CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 1221 2356777888888888754 3455554443 12222344445555555556666666655
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
+.-++ ..+..++...+++.+|..+.+
T Consensus 772 k~gD~----------------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 772 KMGDL----------------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HhccH----------------HHHhhheeecccchHhHhhhh
Confidence 54221 223344555666666655444
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.19 E-value=0.017 Score=32.65 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.++..+|.+|...|++++|..+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 568899999999999999999999999974
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.08 E-value=1.3 Score=41.78 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE--EVAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
..+...|-.+-+.+++++|...|.+..+.... .|. ..+++. .+.++|+ .++.+.-...+....+..
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--- 75 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--- 75 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc---
Confidence 34677888889999999999999998765322 221 112332 3333443 344444444433333222
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHHHhcCCHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAV 265 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~ 265 (581)
+..+ ....-.|...++.+++.+|++.+..--+.... ...+ .....-...+.++...|++.++.
T Consensus 76 -~~s~---~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~---~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 76 -GKSA---YLPLFKALVAYKQKEYRKALQALSVWKEQIKG---TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred -CCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc---cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 2222 23345677888999999999877654332111 1111 11222344678889999999999
Q ss_pred HHHHHHHHHH
Q 008016 266 EIYHRVITIL 275 (581)
Q Consensus 266 ~~~~~al~~~ 275 (581)
..+++.+...
T Consensus 149 ~iLn~i~~~l 158 (549)
T PF07079_consen 149 AILNRIIERL 158 (549)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 287
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=1.6 Score=40.81 Aligned_cols=185 Identities=14% Similarity=0.043 Sum_probs=127.8
Q ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.+-...+.....-+.++....++..|..++.+..-.... +........++..++.++.+-+..-.+..+.-.++..
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 333445666777899999999999999999987765443 3344555667778888888888888888887777766
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHHHHHcCChHHHH
Q 008016 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAE 477 (581)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~ 477 (581)
..+. ..+...+..-..++..+...|..+.|...+..++....-..+-++.. .+.++..-+..+ ...+.+.+.
T Consensus 343 ~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~ 419 (482)
T KOG4322|consen 343 RSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP 419 (482)
T ss_pred HHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence 6554 22223344556788888899999999999999988665432222111 111111111112 556778888
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
.+++++-.+..+. .-|..+.++.+-++..|...|+.+
T Consensus 420 ~~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~ 456 (482)
T KOG4322|consen 420 RYLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSP 456 (482)
T ss_pred HHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCch
Confidence 8888888887765 456677888999999999999876
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=6.1 Score=45.83 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=76.5
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~ 532 (581)
...++.+|...|++....|+++.|..++-+|.+.. ...+....|..+...|+.. .|+..+++.++....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence 45678899999999999999999999988886632 2356788899999999999 999999999865433
Q ss_pred hcCCC---CH------HHHHHHHHHHHHHHHcCCh--hhhHHHHHHHHHHHH
Q 008016 533 EFGSE---SE------EVMLTLKKVVSYLDKLGRK--EEKFPLKKRLSNLRM 573 (581)
Q Consensus 533 ~~~~~---~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~l~~ 573 (581)
..... .| ....+...++......|+. ++-++.|..+.++.+
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 21111 01 1122444555555666663 234566777776655
No 289
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=2.7 Score=41.62 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+.+.|...++..+|..+++.|...+..... ...+..-+.....++.||....+.+.|.++++++.+.. |
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~ 425 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------R 425 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------c
Confidence 667788889999999999999998875432 12234457778899999999999999999999987654 3
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (581)
...-....+..+....|.-++|+...........
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 3333345556666778899999998888776543
No 290
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.44 E-value=0.013 Score=32.79 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
++++.+|.++.+.|++++|++.|+++++..|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999987654
No 291
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.24 E-value=0.53 Score=32.28 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
.-|.-++...+.++|+..++++++.. .+.++...++-.+..+|...|++.+.+.+..+-+++.++.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444567888999999999999874 3466788889999999999999999999988888877654
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.21 E-value=2.9 Score=39.62 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---------------------CCChhhHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---------------------TESADLVLPLFSLGSLFIK 299 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~ 299 (581)
+|..+.++..++.++..+|+...|.++.++|+-..+.... ..+.....++........+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 4556788999999999999999999999999877663321 1123344566677888899
Q ss_pred cCCHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016 300 EGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (581)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (581)
.|-+..|.++.+-.+.+ ++. +|. -+...+-....+.++++--+++++.......+ ..........+.
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-----~~~~~lPn~a~S 183 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-----NWLSLLPNFAFS 183 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-----hhhhhCccHHHH
Confidence 99999999999888775 233 333 23334444556778887777777655442110 000112233466
Q ss_pred HHHHHHHcCCh---------------HHHHHHHHHHHHHH
Q 008016 379 LAELLHIVGRG---------------QEGRELLEECLLIT 403 (581)
Q Consensus 379 la~~~~~~g~~---------------~~A~~~~~~al~~~ 403 (581)
.+.++...++. ++|...+.+|+..+
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 77788888887 89999999998875
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=1.4 Score=35.66 Aligned_cols=124 Identities=11% Similarity=-0.089 Sum_probs=85.6
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH--HHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE--ALDC 504 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 504 (581)
..++.++|+.-|...-+. .-...| ..+....+.+..+.|+...|...|.++-... ..|.... +...
T Consensus 70 ~~~k~d~Alaaf~~lekt----g~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlr 137 (221)
T COG4649 70 QENKTDDALAAFTDLEKT----GYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLR 137 (221)
T ss_pred HcCCchHHHHHHHHHHhc----CCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHH
Confidence 446778888777665431 111222 3356788999999999999999999875421 2343332 2233
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 505 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 505 la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
-+.++...|.++ ......+.+-++.+|-...+...||..-.+.|++.+|..+|.+...
T Consensus 138 aa~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 455566667655 4444455556677888889999999999999999999999998764
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.12 E-value=0.04 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+++.+|.++...|++++|...|+++++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57889999999999999999999998754
No 295
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=2.3 Score=37.93 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016 166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245 (581)
Q Consensus 166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 245 (581)
..-+......|++.+|...+..+.... +....+...++.+|...|+.+.|...+...-.-.. ....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~~ 203 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKAA 203 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhHH
Confidence 344556677899999999999987765 33355678899999999999999888765322110 0111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (581)
..+......+.......+....-++ +. .+|+....-..++..+...|+.+.|.+.+-..+.
T Consensus 204 ~~l~a~i~ll~qaa~~~~~~~l~~~-~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 204 HGLQAQIELLEQAAATPEIQDLQRR-LA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHH-HH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111222222222222222111 11 2566778888999999999999999887766554
No 296
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.07 E-value=0.091 Score=30.34 Aligned_cols=36 Identities=19% Similarity=-0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
.++..||.+-...++|++|..-|++++++.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 367889999999999999999999999999887654
No 297
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.93 E-value=3.2 Score=38.73 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (581)
.+|....++..+.......-. .+.-+.+|++|++. +|.....+..+-....+..+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 356666666666554433322 34445566666653 4555555566666666777777777
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHH
Q 008016 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK 547 (581)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~ 547 (581)
+-+++++... ++.+.....+...-......-... .....|.+++.......... ....+.++..
T Consensus 86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 7788877642 344444333333322222333455 78888888887665554332 2345667778
Q ss_pred HHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 548 VVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 548 la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
+.......|-.+.|...++-.+++.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888999999999999999888774
No 298
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.81 E-value=0.069 Score=50.32 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
.-+.....-+.++.|+..|.+++++ +|..+..+.+-+..+.+.+++..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3466677889999999999999998 6667777888889999999999999999999975 58888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.+|...|......+++.+|...|+....+
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999887765
No 299
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.75 E-value=0.11 Score=29.94 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
.++..||.+-...++|++|+.-|++++++.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999999887654
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.62 E-value=4.2 Score=38.56 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI 385 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 385 (581)
+|..+.++..++.++..+|+...|.+++++|+-.++.. .+..+.+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999998776632 01112234445566777888899
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 386 VGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
.|-+..|.++.+-.+.+. +. +| ..++..+-....+.++++--+++++.......+..-..-|. ..+..+
T Consensus 116 RG~~rTAlE~~KlLlsLd-----p~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLD-----PDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhcC-----CCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHH
Confidence 999999999998877762 22 33 23444455556677888777777776544211000001222 345667
Q ss_pred HHHHHcCCh---------------HHHHHHHHHHHHHH
Q 008016 465 ITLYHLNRD---------------KEAEKLVLEALYIR 487 (581)
Q Consensus 465 ~~~~~~g~~---------------~~A~~~~~~a~~~~ 487 (581)
.++...++- ++|...+.+|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 777777777 89999999998765
No 301
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.59 E-value=0.053 Score=51.05 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+-..+...+..++|+.|+.+|.+++++ +|..+..+.+.+.++...+++..|+.-+.++++..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d------- 68 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD------- 68 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------
Confidence 3556778889999999999999999988 88888888888899999999999999888876653
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
|....++..-|.+....+++.+|...|+....+
T Consensus 69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred chhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 788888888999999999999999999887765
No 302
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.54 E-value=5 Score=39.07 Aligned_cols=101 Identities=8% Similarity=-0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+..+.+.+-.. .+++..+.|++.+.. -|..+.++......-+...+|+..+.+|.+++...-.
T Consensus 22 sw~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn----- 85 (656)
T KOG1914|consen 22 SWSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN----- 85 (656)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-----
Confidence 344444444333 889999999998765 5666777777788888899999999999987654311
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (581)
-++.. ..+..+-...|+...+....-+|.+......+
T Consensus 86 lDLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig 122 (656)
T KOG1914|consen 86 LDLWK--LYLSYVRETKGKLFGYREKMVQAYDFALEKIG 122 (656)
T ss_pred HhHHH--HHHHHHHHHccCcchHHHHHHHHHHHHHHHhc
Confidence 12221 22334444566666666666666665544433
No 303
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.52 E-value=3.9 Score=37.73 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=109.7
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
....+++..|+..+..+-.. ........++..|.. ..+..+|..++..+.. ....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~---------~g~~ 109 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA---------DGLA 109 (292)
T ss_pred ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh---------cccH
Confidence 34566777777777776531 112556667777655 3467788888885322 2233
Q ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 008016 204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI 272 (581)
Q Consensus 204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al 272 (581)
...+.+|.+|.. ..+..+|..+|+++... .++.-..+...++.+|..-. +...|...|.++-
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 456778988876 45899999999999874 22211344677777777642 2236777777766
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC
Q 008016 273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (581)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (581)
... ...+...+|.+|.. ..++.+|..+|.++-+. .+ ......++ ++...|
T Consensus 183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 552 35677888888855 44889999999998774 12 56677777 666655
No 304
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=4.4 Score=38.14 Aligned_cols=197 Identities=15% Similarity=0.033 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
+-....+.....+.++....++..|..++.+..-.... +.+......++..++.++.+.+....+..+.-.++....+
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se 345 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE 345 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 44445666777899999999999999988887654322 2334456677888888888888888888877777766554
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGRELL 396 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~ 396 (581)
. ..+-..+.+-..++....-.|..+.|...+..++....-..+..... ...+.++..-+..+ ...+.+.+..++
T Consensus 346 y--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L 422 (482)
T KOG4322|consen 346 Y--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL 422 (482)
T ss_pred h--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence 4 22233445556788888899999999999999988765321111110 01111111111112 456678888888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHH
Q 008016 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE---AERLLRICLD 443 (581)
Q Consensus 397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~ 443 (581)
+++-....+. ..+.....+.+.++..|...|+.++ +...|+++..
T Consensus 423 ~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 423 DLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 8888887776 4566677888889999999998654 4455555544
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.45 E-value=0.82 Score=36.71 Aligned_cols=91 Identities=15% Similarity=0.021 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
+....+..++.....-...++.+++..++...-.+ .|..+..-..-|..+...|++.+|+.+++.+...
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~- 73 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER- 73 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence 33455667888888889999999999888765544 7888888888999999999999999999986433
Q ss_pred hhcCCCcchHHHHHHHHHHHHHhccCHH
Q 008016 193 DSLKDDEPLLDAILLHMGSMYSTLENYE 220 (581)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (581)
.+....+--.++.|+...|+.+
T Consensus 74 ------~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 ------APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ------CCCChHHHHHHHHHHHHcCChH
Confidence 2333333445677777777753
No 306
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=5.5 Score=38.80 Aligned_cols=274 Identities=18% Similarity=0.087 Sum_probs=150.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
.....+...+..+. ....+++...+....++ +.....-+..+...|+.+.|+..++..++... ..-..
T Consensus 236 ~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~ 303 (546)
T KOG3783|consen 236 QFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKS 303 (546)
T ss_pred HHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHH
Confidence 33444555565555 44445555444443333 34455667778888888888888888776211 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHH--------HCCCHHHHHHHHHHHHHH
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKC--------ANGNAEEAVELYKKALRV 358 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~ 358 (581)
..++.+|.++..+.+|..|-..+....+... ..--.|..++ -++. ..|+-++|..+++.....
T Consensus 304 l~~fE~aw~~v~~~~~~~aad~~~~L~desd--------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l 375 (546)
T KOG3783|consen 304 LMVFERAWLSVGQHQYSRAADSFDLLRDESD--------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL 375 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
Confidence 5677889999999999999998888766421 1112222333 2222 244667777777766666
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--cCHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVEAER 436 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~ 436 (581)
.... +.+.|.-..+ ...+.-+...+. -.+.. .-.+ .+..++.++..- ...++..
T Consensus 376 ~~~a---~K~~P~E~f~-~RKverf~~~~~-~~~~~-------------~la~-----P~~El~Y~Wngf~~~s~~~l~- 431 (546)
T KOG3783|consen 376 LANA---GKNLPLEKFI-VRKVERFVKRGP-LNASI-------------LLAS-----PYYELAYFWNGFSRMSKNELE- 431 (546)
T ss_pred HHhc---cccCchhHHH-HHHHHHHhcccc-ccccc-------------cccc-----hHHHHHHHHhhcccCChhhHH-
Confidence 5542 1222221111 112222222211 00000 0001 122222222221 1222222
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC-C
Q 008016 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE-D 515 (581)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 515 (581)
++........-.+..+..--+.-+|.++...|+...|..+|...++. +.....++.-.+.+++.+|.++...|. .
T Consensus 432 ---k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~ 507 (546)
T KOG3783|consen 432 ---KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGL 507 (546)
T ss_pred ---HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccCh
Confidence 22111111111122223334566799999999999999999988865 333344555667889999999999998 6
Q ss_pred hHHHHHHHHHHHHHH
Q 008016 516 DTKLLELLKRVLRIQ 530 (581)
Q Consensus 516 ~~~A~~~~~~a~~~~ 530 (581)
. ++..++.+|.+..
T Consensus 508 ~-e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 508 K-EARALLLKAREYA 521 (546)
T ss_pred H-HHHHHHHHHHhhc
Confidence 6 9999999997743
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.14 E-value=4.7 Score=37.18 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=108.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
....+++..|...+..+-.. .. ......++.+|... .+..+|..+|..+.+ .....
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~ 110 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE 110 (292)
T ss_pred ccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence 33566777888777776552 11 25566677777653 457778888885543 23456
Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 008016 331 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC 399 (581)
Q Consensus 331 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a 399 (581)
+...||.+|.. ..+..+|..+|.++.+.- .... ......++..|..-+ +...|...|.++
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 67789998887 448999999999998751 1111 223466777776542 223577777766
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016 400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (581)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (581)
-... ...+...+|.+|.. ..++.+|..+|.++.+. .+ ......++ ++...|
T Consensus 182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence 5542 33467778877755 34899999999999873 22 45677777 666655
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.10 E-value=0.86 Score=36.62 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+......+..+...-...++.+++..++..+.-+. |.....-..-|+++...|++.+|+..++.+..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-------PEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 44555667777777788889999999988876654 55556667789999999999999999998654
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAK 262 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~ 262 (581)
..+....+--.++.++...|+..
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 22333444455677777777653
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.06 E-value=0.071 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 579 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 579 (581)
+.++.+|..+.+.|++++|..+.+.++++.|...+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4678899999999999999999999999998877754
No 310
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=0.025 Score=50.61 Aligned_cols=90 Identities=20% Similarity=0.136 Sum_probs=78.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (581)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (581)
.-....|.+++|++.+..++.+ +|.....+...+.++...++...|+.-+..++++ +++.+..|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y 185 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY 185 (377)
T ss_pred HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence 3345678899999999999887 6778889999999999999999999999999986 56666777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
-..+.....+|++++|...+..+.++
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhc
Confidence 77888889999999999999999886
No 311
>PRK14707 hypothetical protein; Provisional
Probab=93.97 E-value=15 Score=42.44 Aligned_cols=301 Identities=11% Similarity=0.022 Sum_probs=149.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH--HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHH
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL 244 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 244 (581)
.+++++-..+++..+..+-..+..+...+.. ++.....+ ..++.++...+++.+...+-.-++.+...+........
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~-e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq 914 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLAD-EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK 914 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhc-ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence 3455566666666555555555444444322 23332222 33566667777777777666666666665532222222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
...-..+++++....+|.++-.+-.-+..+...... .+..... -..+++++-..+++.+...+-.-+..+......
T Consensus 915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~ 992 (2710)
T PRK14707 915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD 992 (2710)
T ss_pred hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence 233445677777777777755544444444444321 2222222 234667777777777766655555555444311
Q ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
+........-..++.++....++.++-.+-.-+..+.... ..+... -..--..++.++....+|.+.-.+-.-+..
T Consensus 993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707 993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence 1111111222345666666666655444444444444332 111111 001114566677777777665554444444
Q ss_pred HHHHhcCCCChHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016 402 ITEKYKGKEHPSF--VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (581)
Q Consensus 402 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (581)
+..... +.+.. ...-..++.++....++.+.-.+-+.++.+........++........++.++-...++..
T Consensus 1070 LA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707 1070 LAERLS--DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred HHHHhh--ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence 443331 11211 1122345556666666666666666666666555443333333334455555555555543
No 312
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.90 E-value=4.6 Score=36.27 Aligned_cols=205 Identities=15% Similarity=0.081 Sum_probs=108.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhcCCCChHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF 414 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~ 414 (581)
+..+.+.|++..|.++..-.++.+.+. ..+.+. ....+++.+....+.-+ +-.++.+++++.. +. +......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCC
Confidence 444566677777777777777766653 111111 12256666666665433 4556777788777 32 3444455
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRIC-----------LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
...+..+|..|.+.|++.+|+.+|-.. +...... ....+..........-|...|+...|...+...
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~--~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK--GYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH--TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 678888999999999999999887321 1111111 111122222333445567789999999988877
Q ss_pred HHHHHHH----------cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008016 484 LYIREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD 553 (581)
Q Consensus 484 ~~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 553 (581)
.+..... ..++.|. ..-..-|-.+. ..+ +...|....+.++..+. .+|.....+..+|..|.
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~-e~~-----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yF 239 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTC-ERD-----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYF 239 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHH-HHT------HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH
T ss_pred HHHHhccCcchhccccCCCCCCch-HHHHHHHHHHH-hcC-----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHC
Confidence 7653322 1112221 12222222222 222 23467776666665543 24677788899999998
Q ss_pred HcCC
Q 008016 554 KLGR 557 (581)
Q Consensus 554 ~~g~ 557 (581)
....
T Consensus 240 gi~~ 243 (260)
T PF04190_consen 240 GIQP 243 (260)
T ss_dssp ---S
T ss_pred CCCC
Confidence 7543
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.89 E-value=0.038 Score=49.50 Aligned_cols=100 Identities=14% Similarity=0.031 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
......-..+...+..|.+++|++.|..++++ +|..+..+...+.++..+++...|+.-+..++.+.
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--- 178 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--- 178 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC---
Confidence 44445666777889999999999999999887 88899999999999999999999999999887764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
++.+.-+-..|.....+|++++|...+..+.++
T Consensus 179 ----~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 179 ----PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ----cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 444445566777888899999999999998875
No 314
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.81 E-value=4.7 Score=36.00 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC---CC-------HHHHHHHHHHHHHHHhcC--------------CH
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TS-------ILLVTSLLGMAKVLGSIG--------------RA 261 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~~~~~~~la~~~~~~g--------------~~ 261 (581)
.+.+..+++..|+..+|+..+++=+.......++ .. ...+.-+..+|....... -|
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy 92 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY 92 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence 3566788899999999999999888887776554 11 112222334444443322 12
Q ss_pred HHHHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 262 KKAVEIYHRVITILELNRG-TE-------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
..|-.+...-.+..+.... ++ .+.....+................++++.+|++.+++.
T Consensus 93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~- 171 (247)
T PF11817_consen 93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY- 171 (247)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence 2333333222222222210 01 00000011111111112233445678888888887765
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
............+|..|...|++++|..+++.+...+++ ..-......++..+..++...|+.+..+.+.-+
T Consensus 172 -~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~----egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 172 -GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR----EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred -ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 223345566778999999999999999999999877765 234555666778888899999998887766443
No 315
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.75 E-value=7.2 Score=38.01 Aligned_cols=178 Identities=13% Similarity=-0.071 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHHH
Q 008016 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTK 447 (581)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~ 447 (581)
....||..+...|+|+-|...|+.+..-+... ......+.+....|.+....+.. ++...+++.|...+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 34679999999999999999999887755321 11223444555555555555533 4777888888887776
Q ss_pred hcCC---CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh---HHHHHHHHHHHH--HHcCCChHHH
Q 008016 448 TVGP---DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP---VGEALDCLVSIQ--TRLGEDDTKL 519 (581)
Q Consensus 448 ~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~~A 519 (581)
...+ .......+....+.++...|.+.+|...+-+.....- .+... .+..+..+|.++ ....... .
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~-~- 361 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS-P- 361 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC-c-
Confidence 3211 1224455667778888889999888877776655321 01111 344455566666 3321111 0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 520 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 520 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
... ........+..-|.-|.++|+...|..+|.+++.+.+.
T Consensus 362 --~~~------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 362 --GLT------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred --cch------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000 01222333445578899999999999999999988754
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.64 E-value=3.1 Score=34.98 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (581)
...-+.+.....||..|. ..+.++|+.++.++++... +++......+..|+.++..+|+++.|-
T Consensus 135 ~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 135 TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 334456778888998887 6789999999999999853 333445678889999999999999884
No 317
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.36 E-value=2.5 Score=31.48 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=58.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhhcCCCc
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+..++..|++-+|+++.+..+... ..+......+..-|.++..+ .+.+-=..++.-+++.+.....-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-------~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-------GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-------cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 4677899999999999999987652 11222234555556666543 333333334444444333323333
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVIN 231 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 231 (581)
|..+..++.+|.-+...-.|+++..-.++++.
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55566677777665555555555555555544
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=3.7 Score=33.33 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
-+..+..+.+.+..++|+.-|...-+. ....-..-+....+.+....|+...|+..|..+-.... .|
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-----~P 127 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-----IP 127 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-----Cc
Confidence 344566677888899998888765432 22233344567788899999999999999998655431 12
Q ss_pred hHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 201 LLD--AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 201 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
... .+-..-+.++...|-|+.-... .+.+.++.+|....+.-.||..-++.|++.+|...|.+...
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 221 2234456677788887765443 33334567788888888999999999999999999988765
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.26 E-value=0.34 Score=37.13 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
...+..++++++.+..+.+ -.++.+.+.+.++. .......+.++.|+..+++.|+|++++.+.+..++..++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3466788999988877765 34555666666554 33345567889999999999999999999999888876665
Q ss_pred hh
Q 008016 577 QK 578 (581)
Q Consensus 577 ~~ 578 (581)
|.
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 54
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.25 E-value=4.5 Score=34.05 Aligned_cols=80 Identities=20% Similarity=0.098 Sum_probs=56.0
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
.+-.-++|...|-++- +....+.+.....||..|. ..+.++|+.++-+++++.. +++.-..+++..|+
T Consensus 118 sr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLa 185 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLA 185 (203)
T ss_pred hccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHH
Confidence 3434456666555442 2334456777888886665 7788999999999998763 34233457889999
Q ss_pred HHHHHcCCChHHH
Q 008016 507 SIQTRLGEDDTKL 519 (581)
Q Consensus 507 ~~~~~~g~~~~~A 519 (581)
.++..+|+++ .|
T Consensus 186 s~~~~~~~~e-~A 197 (203)
T PF11207_consen 186 SIYQKLKNYE-QA 197 (203)
T ss_pred HHHHHhcchh-hh
Confidence 9999999988 55
No 321
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.23 E-value=6.1 Score=35.53 Aligned_cols=215 Identities=8% Similarity=-0.013 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Q 008016 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGI 191 (581)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~ 191 (581)
.+.+.+..+..-+..+.+.|++.-|.++..-.++.+... . .+........++.+....+.-+ +-..+..+++++
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~----~-~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS----E-DPVDEESIARLIELISLFPPEEPERKKFIKAAIKW 79 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT----T----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 445566678888899999999999999988888776662 1 2223334456676666665443 455667778888
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016 192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI-----------NVLESRYGKTSILLVTSLLGMAKVLGSIGR 260 (581)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 260 (581)
. ..+.........+..+|..+++.|++.+|..++-..- ..+... +. +.+...........|...++
T Consensus 80 S-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~-~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 80 S-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY-PSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp H-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS-S--HHHHHHHHHHHHHHTTB
T ss_pred H-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC-CcchhHHHHHHHHHHHHhcC
Confidence 7 4344444556678899999999999999999874321 111111 11 11122222233345667799
Q ss_pred HHHHHHHHHHHHHHHHHh----------cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 261 AKKAVEIYHRVITILELN----------RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
...|...+..-.+..... ...+.|.. .....|-.+ +..+ +...|....+.++..+. .+|....
T Consensus 157 ~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~ 229 (260)
T PF04190_consen 157 LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD----NLPLFKKLCEKYKPSLK-RDPSFKE 229 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC----cHHHHHHHHHHhCcccc-ccHHHHH
Confidence 999998887766652221 01122322 111112222 2233 23566666665554322 2345566
Q ss_pred HHHHHHHHHHHC
Q 008016 331 AMCSLAHAKCAN 342 (581)
Q Consensus 331 ~~~~la~~~~~~ 342 (581)
.+..+|..|+..
T Consensus 230 ~L~~IG~~yFgi 241 (260)
T PF04190_consen 230 YLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHH--
T ss_pred HHHHHHHHHCCC
Confidence 677777777754
No 322
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=5.7 Score=35.94 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
+-+.+.++-.++..| ......++.+.|..|++.|+-+.|.+.+.+..+-.-.. +...+.......+|..|....
T Consensus 85 ~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~-- 158 (393)
T KOG0687|consen 85 KELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHD-- 158 (393)
T ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHH--
Confidence 334444444444322 34567889999999999999999999998876643332 223345566667777775543
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
--.+..+++-.+.++ |.|..........-|.......++.+|-.+|-.++..+.
T Consensus 159 -lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 159 -LVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred -HHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 333344444444443 555555444445566667777889999888888776543
No 323
>PRK14707 hypothetical protein; Provisional
Probab=93.17 E-value=21 Score=41.47 Aligned_cols=297 Identities=9% Similarity=0.023 Sum_probs=149.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
.++.++...+++..+..+-.-+..+...+...........-..++.++...++|.+...+-.-+..+...+.. ++...
T Consensus 836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~--d~~Lr 913 (2710)
T PRK14707 836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD--EPELR 913 (2710)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc--CHHHH
Confidence 4566677777777776666666666554422211111112344667777777887766666666666555432 23322
Q ss_pred HH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 288 LP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV--GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 288 ~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
.. -..+++++-...++.++-.+-.-+..+..... .++.. ...-..++.++...+++.+...+-.-+..+....
T Consensus 914 qal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL- 990 (2710)
T PRK14707 914 KALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERL- 990 (2710)
T ss_pred hhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHH-
Confidence 22 24567777777777765555444444444442 22222 2223456666777777766555554444444332
Q ss_pred cCCCCChHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHH--HHHHHHHHHHHccCHHHHHHHHHH
Q 008016 364 YMSLDDSIM-ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT--HLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 364 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
..+.... ...-..++.++....+|.++-.+-.-+..+.... ...+.... .-..++.++...+++.+...+-.-
T Consensus 991 --~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL--a~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707 991 --VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL--SNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred --hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh--ccCHhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence 1111000 0011346667777777766655555555555554 12222222 223456666666666654444443
Q ss_pred HHHHHHHhcCCCCcchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016 441 CLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 515 (581)
Q Consensus 441 al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 515 (581)
+..+...... ++... ..-..++.++-...++.+.-..-..++.+...+-...++........++.+.....++
T Consensus 1067 a~aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707 1067 ASALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred HHHHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence 3333333211 11111 1223566666666777766666666666665553333332222233344444444443
No 324
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.13 E-value=0.2 Score=48.41 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (581)
++.-|..+...|+...|+.++..|+.... ........+++.+....|-...|-.++.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 45555566678999999999999987532 2234457789999999999999999999999883 22
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.....+.+|.+|....+.+.|++.|++|++.
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 2456778899999999999999999999985
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.99 E-value=7.9 Score=36.20 Aligned_cols=148 Identities=12% Similarity=0.056 Sum_probs=91.1
Q ss_pred ChhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (581)
+|....++..+....-..-. .+.-+.++++|++. +|.....+..+-....+..+.++..+
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 56666667666655443322 23334455555553 33333333334444456667777777
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHH
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN 420 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~ 420 (581)
-+++++.. .++...+...|...-..-...-.++.....|.+++.......... ......++..
T Consensus 87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 78887775 344444444443333333344468899999999988776553322 2234566777
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
+.......|..+.|+..++-.+++.
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888899999999999999998863
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.83 E-value=1.3 Score=31.92 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQR 228 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (581)
+|.+..+.+.++..+...|++++|++.+-.++........+ . +-..+-.++...|.-+.-..-|++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~---~--ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD---A--ARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC---H--HHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc---H--HHHHHHHHHHHcCCCChHHHHHHH
Confidence 88889999999999999999999999887766654322111 1 123344445555554444444443
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.67 E-value=25 Score=41.25 Aligned_cols=111 Identities=12% Similarity=0.021 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (581)
......+|...|.+....|+++.|..++-+|.+. ....+....|..++..|+...|+..+++.++.....
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 4567889999999999999999999998888763 133567889999999999999999999998765322
Q ss_pred -cCCC--Chh------HHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHH
Q 008016 491 -FGKD--SLP------VGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQE 531 (581)
Q Consensus 491 -~~~~--~~~------~~~~~~~la~~~~~~g~~~~-~A~~~~~~a~~~~~ 531 (581)
.++. .|. ...+...++......|+.+. +-+.+|..+.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1110 111 12345556666667777542 33456777776643
No 328
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.61 E-value=6.9 Score=34.54 Aligned_cols=185 Identities=17% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
+..+|.+....|+|++.+.+.++++... ......-.+.++.+|-. .|....+...+.......+ +...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 4568899999999999999999988762 11122233334444422 2333333333332222111 11111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC-CCChHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL 395 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 395 (581)
.... +..-|.. .=-++=...+..++.+.....-.. .+.......+-..|..|.-. | -.+.|...
T Consensus 74 ~~~~----~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 74 KQVK----LIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 1111 1111110 011233444555555554421111 12222222233344444321 1 24789999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHH
Q 008016 396 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~ 447 (581)
|++|+.+....+++.+|.......+.+..| ...|+.++|+.+.+++++....
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999988899998888887777766 4589999999999999886544
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.61 E-value=0.13 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKR 567 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~ 567 (581)
.+...+|.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567899999999999999998764
No 330
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.53 E-value=0.093 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
.++..+|.++...|++++|...+++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3577899999999999999999999987643
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.45 E-value=1.4 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..++.+|..+.+.|+|++|..+.+.++++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 356788999999999999999999999865
No 332
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.44 E-value=2.2 Score=38.19 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
...++..++..+...|+++.++..+++.+.. +|..-..+..+...|...|+...|+..|++.-.....-+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4457888999999999999999999998884 67778899999999999999999999999998876666665
Q ss_pred CChh
Q 008016 494 DSLP 497 (581)
Q Consensus 494 ~~~~ 497 (581)
+...
T Consensus 224 ~P~~ 227 (280)
T COG3629 224 DPAP 227 (280)
T ss_pred CccH
Confidence 5543
No 333
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.42 E-value=7.3 Score=34.38 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
.++.+|+...+.|+|++.+.++++++... ..-...-.+.++.+|-. .|....+...+......... ..
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~---------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~--~~ 71 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN---------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN--KG 71 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS---------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC---------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc--cc
Confidence 36778888899999999999999988751 22223334445555532 34444444444443332211 11
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhc-----C-----CHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TSILLVTSLLGMAKVLGSI-----G-----RAKKAV 265 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~ 265 (581)
.+.... +..-| +..=-++=...+..++.+.....-+ +....+..+...|..|... | -.++|.
T Consensus 72 ~~~~~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 72 NEKQVK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp THHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hhHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111111 11111 1111123334455555554442211 1122333333344444321 2 247899
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 319 (581)
..|++|+++....+++.+|.......+.+..|+. .|+.++|....+++++....
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999998888899888877777777644 89999999999988876543
No 334
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.41 E-value=7.7 Score=34.63 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (581)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (581)
.....++++.+|.+.++.. ........+...+|.-|...|++++|.++++.+...+++. .-..-...++..+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~----~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKY----GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLE 226 (247)
T ss_pred hHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence 3456688888998888763 2344555666789999999999999999999997776543 334445567788889
Q ss_pred HHHHccCHHHHHHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~a 441 (581)
++...|+.+..+.+.-+.
T Consensus 227 Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999988877654443
No 335
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=8.5 Score=34.88 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
......++.+.|..|++.|+.+.|.+.+.+..+..... ....+.......+|..|....- -.+..+++-.+.++.
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~l---V~~~iekak~liE~G 174 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDL---VTESIEKAKSLIEEG 174 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHH---HHHHHHHHHHHHHhC
Confidence 34456678899999999999999999999877654333 2344556666777877755433 333344444444443
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
...+..+...+|. |..+....++.+|..+|-.++..+
T Consensus 175 gDWeRrNRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 175 GDWERRNRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred CChhhhhhHHHHH--HHHHHHHHhHHHHHHHHHHHcccc
Confidence 2222333333333 445566778888888887776544
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.14 E-value=2.4 Score=33.56 Aligned_cols=88 Identities=10% Similarity=-0.065 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (581)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (581)
...+..+++....-...++++++..++...--+ .|..+..-..-|..+...|++.+|+.+++.+..-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-- 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA-- 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--
Confidence 344556777777777799999998877765433 77777777888999999999999999998864432
Q ss_pred cCCCcchHHHHHHHHHHHHHhccCH
Q 008016 195 LKDDEPLLDAILLHMGSMYSTLENY 219 (581)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (581)
+.....--.++.|+...|+.
T Consensus 75 -----~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 75 -----GAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -----CCchHHHHHHHHHHHhcCCh
Confidence 22222334466677777664
No 337
>PF12854 PPR_1: PPR repeat
Probab=92.14 E-value=0.17 Score=28.46 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 542 MLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 542 ~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
..++..|...|.+.|+.++|.++|+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 567899999999999999999999875
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.29 E-value=2.4 Score=33.48 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (581)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (581)
.....+..+...-...++.+++..++..+.-+. |.....-..-|+++...|++.+|+..+++..+-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------- 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-------PNLKELDMFDGWLLIARGNYDEAARILRELLSS------- 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence 334444455555556889999998888776654 444455567899999999999999999987652
Q ss_pred CCHHHHHHHHHHHHHHHhcCCH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRA 261 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~ 261 (581)
.+......-.++.++...|+.
T Consensus 74 -~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 -AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred -CCCchHHHHHHHHHHHhcCCh
Confidence 111233334456666666664
No 339
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.18 E-value=11 Score=34.01 Aligned_cols=111 Identities=12% Similarity=-0.046 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
+......||.+|.+.++|..|...+.-. .........+.......+..++++|...++.. +|..+..++--.....
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~v-eae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKV-EAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHhhhcc--
Confidence 4456678999999999999988776532 11110001112233456778999999999988 8888877764332221
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
.+..-.......-|+++-..|++-||...|.+...
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333334457778888888888887776543
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.18 E-value=0.35 Score=25.15 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998876
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.13 E-value=0.3 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.++..+|.++...|++++|...++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778999999999999999999998864
No 342
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.04 E-value=4.5 Score=29.19 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
+|....+.+.+|..+...|++++|++.+-.++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666777777777777777766665554
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.02 E-value=17 Score=35.71 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=69.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 008016 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418 (581)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 418 (581)
....|+++++....... ++... -+ ......++..+.++|-++.|+.+-+. |+ ..
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~------i~---~~~~~~i~~fL~~~G~~e~AL~~~~D-------------~~---~r 324 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPN------IP---KDQGQSIARFLEKKGYPELALQFVTD-------------PD---HR 324 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS--------------HH---HH
T ss_pred HHHcCChhhhhhhhhhh-hhccc------CC---hhHHHHHHHHHHHCCCHHHHHhhcCC-------------hH---HH
Confidence 34568888876666311 11111 11 12246778888999999988876432 21 22
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (581)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (581)
+ .+..+.|+.+.|.+..++ .+....|..||.....+|+++-|++.|+++-+
T Consensus 325 F---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------- 375 (443)
T PF04053_consen 325 F---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------- 375 (443)
T ss_dssp H---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------
T ss_pred h---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------
Confidence 2 345678998888765432 22334788999999999999999999988733
Q ss_pred HHHHHHHHHHHHHcCCCh
Q 008016 499 GEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 499 ~~~~~~la~~~~~~g~~~ 516 (581)
+..|.-+|.-.|+.+
T Consensus 376 ---~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 376 ---FSGLLLLYSSTGDRE 390 (443)
T ss_dssp ---HHHHHHHHHHCT-HH
T ss_pred ---ccccHHHHHHhCCHH
Confidence 345556666677654
No 344
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.02 E-value=18 Score=36.00 Aligned_cols=398 Identities=11% Similarity=-0.023 Sum_probs=205.3
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
...++-.+.+..++.+....-. .-|..-..+...|..-.+.|..+.+...|++.+... |.....|..
T Consensus 52 i~~~~~~~~~~~~r~~y~~fL~------kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-------p~SvdlW~~ 118 (577)
T KOG1258|consen 52 IQENDSIEDVDALREVYDIFLS------KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-------PLSVDLWLS 118 (577)
T ss_pred HhccCchhHHHHHHHHHHHHHh------hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------hhHHHHHHH
Confidence 3444444444555554443321 145555566677777888899999999999977765 333333322
Q ss_pred -HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 209 -MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 209 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
++.+-...|+.+.-...|++|.......+- ....|-.....-..++++..-...|++.+++-...+. ...
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-----S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~----~~f 189 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFL-----SDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN----RHF 189 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchh-----ccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH----HHH
Confidence 333334567777777778887776432211 1222333333335567777777777777665211100 000
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHH---------------HHHHHHcCCCCchHHHHHHHH-------HHHHHHCC
Q 008016 288 LPLFSLGSL--FIKEGKAVDAESVFSRIL---------------KIYTKVYGENDGRVGMAMCSL-------AHAKCANG 343 (581)
Q Consensus 288 ~~~~~la~~--~~~~g~~~~A~~~~~~al---------------~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g 343 (581)
..+.....- ....-..+++...-.... +..-+......+........+ -.++...-
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 000000000 000011111111111100 000000000011111111111 11222223
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (581)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (581)
...+.+-.++..+...-. ...|....-...|......-...|+++...-.+++++--+. .....|...+.
T Consensus 270 ~~~~kr~~fE~~IkrpYf--hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~ 339 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYF--HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYAR 339 (577)
T ss_pred hHHHHHHhhhhhcccccc--ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHH
Confidence 333334444443332111 12233333444556666677789999999999999886652 23356777777
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 503 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (581)
.....|+.+-|...+..+.++. .+........-+......|++..|...++....-. |....+-.
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l 404 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVL 404 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHH
Confidence 7777899999988888887763 23333344555677778999999999999886532 44444444
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHH-HHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
.-+.+..+.|+.+ .+.. +........ .+..++.. ...+...+.. +.-.++.+.|...+.+++.+.+..+.
T Consensus 405 ~~~~~e~r~~~~~-~~~~-~~~l~s~~~--~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 405 RKINWERRKGNLE-DANY-KNELYSSIY--EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHhHHHHhcchh-hhhH-HHHHHHHhc--ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 5556666777776 5553 222222111 12223322 2233344433 44568889999999999888766544
No 345
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.00 E-value=17 Score=35.69 Aligned_cols=104 Identities=8% Similarity=-0.012 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+|.+..+++.|..-+..+ -++++.+.+++..... |....+|...........+|+.-+.+|.+++.-.-.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-- 85 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-- 85 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--
Confidence 788888999988877666 8999999999977665 555566777777778889999999999999864321
Q ss_pred CCCCHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 238 GKTSILLVTSL-LGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 238 ~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.+.| ..+..+-...|+...+....-+|.+.....
T Consensus 86 -------lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k 120 (656)
T KOG1914|consen 86 -------LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEK 120 (656)
T ss_pred -------HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence 1111 223334444566666666655665554443
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=23 Score=36.86 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
|..|..+.+....+......+....|..++..|++++|...|-+.+...
T Consensus 350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3334444444455666677888889999999999999999999988753
No 347
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=6 Score=36.00 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=70.7
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
-+.++.++|+++.++..+..... ..+.........++.++...||..++.+.+.......+....-.+.+...++.
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 34568999999999988876553 22335566778889999999999999999999999887776666656666777
Q ss_pred HHHHHH-hccCHHHHHHHHHHHHH
Q 008016 209 MGSMYS-TLENYEKSMLVYQRVIN 231 (581)
Q Consensus 209 l~~~~~-~~g~~~~A~~~~~~al~ 231 (581)
++.-|+ ..|++.. +|+.++.
T Consensus 162 lssqYyk~~~d~a~---yYr~~L~ 182 (380)
T KOG2908|consen 162 LSSQYYKKIGDFAS---YYRHALL 182 (380)
T ss_pred HHHHHHHHHHhHHH---HHHHHHH
Confidence 766555 5577765 4444444
No 348
>PRK10941 hypothetical protein; Provisional
Probab=90.67 E-value=4.8 Score=36.21 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.+.|.+..|..-++..++.+ |
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 3456778889999999999999999999885 34444456778999999999999999999998865 6
Q ss_pred CChhHH
Q 008016 494 DSLPVG 499 (581)
Q Consensus 494 ~~~~~~ 499 (581)
+.|...
T Consensus 247 ~dp~a~ 252 (269)
T PRK10941 247 EDPISE 252 (269)
T ss_pred CchhHH
Confidence 666543
No 349
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.52 E-value=18 Score=35.29 Aligned_cols=180 Identities=13% Similarity=0.016 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYT 318 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 318 (581)
.....+|+.++..|+|+-|...|+.+.+-+... ......+.+.-..|.+....+.. ++...+++.++..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 346678999999999999999999888765321 11223344555556666655533 477788888888887
Q ss_pred HHcC---CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHH--HHcCChHH
Q 008016 319 KVYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQE 391 (581)
Q Consensus 319 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~ 391 (581)
+... ........+....+.++...|.+.+|...+-+..... ... .....+.++..+|.++ ........
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~ 361 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSP 361 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCc
Confidence 6311 1122455667777888888999888887776665542 111 0000233344455554 11100000
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
.. ......+.-+..-|.-|.+.|+...|..+|.+++.++..
T Consensus 362 ~~---------------~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 362 GL---------------TRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred cc---------------hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00 001122333344567899999999999999999998653
No 350
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.48 E-value=4.8 Score=37.60 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL-- 277 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 277 (581)
..+..++..+|..|...|+++.|++.|.++-+.+.. ....+..+.++..+-...|+|..-..+..++......
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 334567889999999999999999999998776643 3567888889999999999999888888877665200
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
.....-+....+...|+ ....++|..|..+|-.+
T Consensus 222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 00011122234444444 44555888888877654
No 351
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=13 Score=33.20 Aligned_cols=132 Identities=11% Similarity=0.003 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 008016 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (581)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (581)
++-++-+.+.++-.+... .......++.++|..|.+.++.+.+.+++.+.++-.... .-..+...+...||.+|..
T Consensus 92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhcc
Confidence 344455555555444322 244567899999999999999999999998887654332 2233455566677777766
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
+.-.++.++.....++. +.|...........|.......++.+|-.++-..+..+.
T Consensus 168 ~~vV~e~lE~~~~~iEk-------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEK-------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHh-------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 55555555554444442 455544444445566667777888888888887776553
No 352
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=23 Score=38.23 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=107.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH------HcCC----hHHHHHHHHHHHH
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH------IVGR----GQEGRELLEECLL 401 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~al~ 401 (581)
...+|.+|...|+.-+|+.+|.+|..-. +.+. ++..+..-.. ..|+ ...|..+|.++++
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~------ge~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~r 991 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSGF------GEGN-----ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVR 991 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhcc------ccHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHH
Confidence 3456778888999999999999987642 2222 1111111100 2232 1224455555555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
+. ...+-.+.+.++.-+|++. .++++|..+....++-.-..+.|.+-+|...+-
T Consensus 992 ll----------------------e~hn~~E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~ 1045 (1480)
T KOG4521|consen 992 LL----------------------EEHNHAEEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL 1045 (1480)
T ss_pred HH----------------------HHhccHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 44 3345556666666666653 455667777777777777778888887765554
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH------HHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008016 482 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLR-IQEREFGSESEEVMLTLKKVVSYLDK 554 (581)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~------~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~ 554 (581)
+- ++......++..+..++...|+.+ ++..+ ++... +.+..-..........+..|=..+..
T Consensus 1046 ~n---------pdserrrdcLRqlvivLfecg~l~--~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~ 1114 (1480)
T KOG4521|consen 1046 RN---------PDSERRRDCLRQLVIVLFECGELE--ALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA 1114 (1480)
T ss_pred cC---------CcHHHHHHHHHHHHHHHHhccchH--HHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Confidence 32 444445577888888888888864 22111 11111 11111111112222334444456677
Q ss_pred cCChhhhHH-HHHHHHHHH
Q 008016 555 LGRKEEKFP-LKKRLSNLR 572 (581)
Q Consensus 555 ~g~~~~A~~-~~~~a~~l~ 572 (581)
.+++.+|.. .|+.+..+.
T Consensus 1115 RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1115 RHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred hcchhHHHHHHHHHHHHhc
Confidence 888877765 466665554
No 353
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.86 E-value=12 Score=33.70 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
....++..++..+...|+++.++..+++.+.. +|..-..+..+-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 35678889999999999999999999998877 6666778889999999999999999999998876554444
Q ss_pred CCC
Q 008016 323 END 325 (581)
Q Consensus 323 ~~~ 325 (581)
.++
T Consensus 223 i~P 225 (280)
T COG3629 223 IDP 225 (280)
T ss_pred CCc
Confidence 443
No 354
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.63 E-value=5.8 Score=37.23 Aligned_cols=103 Identities=10% Similarity=0.049 Sum_probs=77.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC------HH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
..-|..++++++|..|..-|..+++++.+...-.. .+ ...+...+..||...++.+-|+....+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 34466778889999999999999998866422111 11 2234567889999999999999999888876
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+|....-+..-|.++....+|.+|-..+--+.-++
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888999999999999987665554433
No 355
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.48 E-value=5.2 Score=27.47 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI 159 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 159 (581)
.....+...|..+-+.|++.+|+.+|+++++.+...+...++.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 34456888899999999999999999999999888764444443
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.32 E-value=1 Score=43.79 Aligned_cols=90 Identities=23% Similarity=0.195 Sum_probs=71.0
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 008016 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH 462 (581)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 462 (581)
+...|+...|..++..|+..... .......+||.+....|-...|-.++.+++.+. .......+.
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~~~ 681 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTFLS 681 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHHHh
Confidence 34579999999999998765321 222356789999999999999999999999873 112235678
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|+++....+.++|++.+++|++..
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcC
Confidence 8999999999999999999998854
No 357
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.24 E-value=11 Score=30.98 Aligned_cols=164 Identities=8% Similarity=0.016 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHHH
Q 008016 161 EVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVLE 234 (581)
Q Consensus 161 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~ 234 (581)
.++....||.-+.. ..++++|..+|.. . -+........+.+|..+. ..++...|++.+..+.+.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------n-Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-- 102 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKK-------N-CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-- 102 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh-------c-ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--
Confidence 34444455443322 3445555555443 2 222334445566776654 346788888888887652
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--------
Q 008016 235 SRYGKTSILLVTSLLGMAKVLGSI-----G--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-------- 299 (581)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------- 299 (581)
+ ...+...+|.+.... + +.++|++++.++-++- ...+.+.|...|..
T Consensus 103 -----n---~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ 164 (248)
T KOG4014|consen 103 -----N---IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTN 164 (248)
T ss_pred -----C---CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhccc
Confidence 2 244566666666543 2 3678888888876541 12233334443332
Q ss_pred ----------------cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 008016 300 ----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI 359 (581)
Q Consensus 300 ----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 359 (581)
..+.+.|.++-.+|-++ ....+..++...|-. -.+.++|..+-.++.++.
T Consensus 165 ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 165 APGEGKPLDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 24455565555555443 334566677776643 236788999999998887
Q ss_pred Hhh
Q 008016 360 KDS 362 (581)
Q Consensus 360 ~~~ 362 (581)
++.
T Consensus 235 ~e~ 237 (248)
T KOG4014|consen 235 EEL 237 (248)
T ss_pred HHH
Confidence 764
No 358
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.17 E-value=8.1 Score=29.28 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
+..+|....+.+++-.++-.|++|+.+.++....... ..+....+||..+...|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4668888899999999999999999998877322111 234557899999999999999999998777665444
No 359
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.72 E-value=0.97 Score=42.65 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhc----CCCCcchHHHHH--H----HHHHHHHcCChHHHHHHHHHH
Q 008016 415 VTHLLNLAASYSRS-KNFVEAERLLRICLDIMTKTV----GPDDQSISFPML--H----LGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 415 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~--~----la~~~~~~g~~~~A~~~~~~a 483 (581)
..++..+|..|... .+.-.|..++.++++...... .+..+.-..++. . ....-.-.++.++ +--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence 34555555555433 346677888888877655411 111111111110 0 0111111122221 22356
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008016 484 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 554 (581)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 554 (581)
+-+.++++|++||++......-|-+|...|+++ ..++++.-|+.+.++.+.|.+|.+...+...+.++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~-rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFE-RCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHH-HHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 777888999999998777777899999999999 9999999999999999999999888888887776654
No 360
>PF12854 PPR_1: PPR repeat
Probab=88.69 E-value=0.95 Score=25.42 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
...+|+.+...|.+.|+.++|.++++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3568899999999999999999999864
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.64 E-value=28 Score=34.74 Aligned_cols=363 Identities=13% Similarity=0.038 Sum_probs=186.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
+..-|..-.+.|..+.+...|++++... |.....+. .++.+--..|+...-...|+++...... +
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~ai----------p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~---d- 147 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQAI----------PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL---D- 147 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc---c-
Confidence 4455566688999999999999998763 22223322 2333334567778888888888877622 1
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH----
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVIT---- 273 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~---- 273 (581)
-.....|-..-..-..++++..-...|++.+++-...+ +.....+.....- -...-..++....-.....
T Consensus 148 F~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~ 223 (577)
T KOG1258|consen 148 FLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKI 223 (577)
T ss_pred hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhc
Confidence 11112233333333567778888888888777521110 0000000000000 0001112222211111110
Q ss_pred -----------HHHHhcCCCChhhHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016 274 -----------ILELNRGTESADLVLPLFSLG-------SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (581)
Q Consensus 274 -----------~~~~~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (581)
..-.......+........+. .++...-...+....++..+...-....+..+.....|..-
T Consensus 224 ~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y 303 (577)
T KOG1258|consen 224 THSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY 303 (577)
T ss_pred ccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence 000000000010001110111 11111112222222222222211111122233445566666
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (581)
...-...|+++...-.+++++--+.. ....|...+......|+.+-|...+..+.++.. +...
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-------k~~~ 366 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-------KKTP 366 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-------CCCc
Confidence 67777899999999999998865432 234566777777778999999888888877652 2233
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
.+...-+..-...|++..|...+++...- -|....+-..-+.....+|+.+.+.. +...+... ..|..+
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~ 435 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YEGKEN 435 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cccccC
Confidence 34444566667789999999999988762 25555555566677788899888875 22222211 122333
Q ss_pred hhH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016 496 LPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 496 ~~~-~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~ 529 (581)
+.. ...+...++......+....|...+.++.++
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 332 2334445555544443333777777777654
No 362
>PF13041 PPR_2: PPR repeat family
Probab=88.60 E-value=2.4 Score=26.34 Aligned_cols=28 Identities=21% Similarity=-0.008 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
.++..+...+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4788899999999999999999999875
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.56 E-value=11 Score=35.50 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--
Q 008016 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK-- 447 (581)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 447 (581)
..+-..+..+|.-|...|+++.|++.|-++-..+.. ...+...+.++..+-...|+|..-..+-.+|......
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 344567788999999999999999999997776633 3566777888888888899998888877777664200
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
.....-+.-..+...++ ....++|..|.+++-.+
T Consensus 222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 00011223334444444 44556888888887655
No 364
>PRK10941 hypothetical protein; Provisional
Probab=88.50 E-value=7.6 Score=34.96 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.....+.++-.+|...++++.|+.+.+..+.+ .|+...-+...|.+|.+.|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 35667888899999999999999999999988 44555667778999999999999999999888764
No 365
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=88.24 E-value=0.55 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 544 TLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
++..+...|.+.|++++|.++|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4677889999999999999999988653
No 366
>PF13041 PPR_2: PPR repeat family
Probab=88.04 E-value=2.8 Score=26.05 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
..+|+.+-..|.+.|++++|.++|+++.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 357888999999999999999999998865
No 367
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.69 E-value=9.8 Score=28.46 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=58.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCC
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
.+.-++..|++-+|+++.+..+....+ +. .....+..-|.++..+ .+.+-=..++.-+++.+.+.. .-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~------~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~L 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE------DE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-EL 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC------CC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-cc
Confidence 356688999999999999998876322 22 1113345556666443 455555555555555554432 23
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.|..+..++.+|.-+.....|+++..-.++++.
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 455666666666655444445555555444443
No 368
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=87.58 E-value=57 Score=37.13 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC-------------------
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------------- 388 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 388 (581)
..+....+|..+...|++.+|+..|.+++...+. ..|.-+.+.++..++.+..-.+.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~----~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS----SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh----cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3455667899999999999999999999999876 35665666665555443321110
Q ss_pred -------------------------------------hHHHHHHHHHHHHHHHHhc---CCCChH--HHHHHHHHHHHHH
Q 008016 389 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS 426 (581)
Q Consensus 389 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~ 426 (581)
.+.-...+++++..+.+.. ....|. ...+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 1111224455555554442 111222 3355566677776
Q ss_pred Hcc--------------------CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 427 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 427 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
... .-.++..++.+++......+ ...+....+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 666 67788888888887644322 23455678899999999999999988888888776
Q ss_pred HH
Q 008016 487 RE 488 (581)
Q Consensus 487 ~~ 488 (581)
.-
T Consensus 475 ~~ 476 (1185)
T PF08626_consen 475 LV 476 (1185)
T ss_pred hc
Confidence 53
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.32 E-value=9.4 Score=37.38 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHH
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRV 229 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~a 229 (581)
.|..||.....+|+++-|+.+|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455555555555555555555544
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.30 E-value=12 Score=35.21 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCC----CCCh----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMS----LDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
|..++++++|..|..-|..+++++.+....+ +... ....+-..|..+|..+++.+.|+....+.+..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 4455667777777777777777766531111 1111 12233456888999999999999998887765
Q ss_pred CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
+|....-+...|.++....+|.+|-..+--+.-++
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777888889999999887766554443
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.07 E-value=9.1 Score=34.15 Aligned_cols=73 Identities=22% Similarity=0.082 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 008016 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 496 (581)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 496 (581)
.+...+..|...|.+.+|+++.++++.+ +|-....+..+..++...|+--.|.+.|++.-+..+..+|-+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 4455677899999999999999999885 56666778889999999999999999999988888777776554
Q ss_pred h
Q 008016 497 P 497 (581)
Q Consensus 497 ~ 497 (581)
+
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 4
No 372
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.78 E-value=8.1 Score=26.84 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (581)
....++..|...-+.|++++|+.+|.++++.+...+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk 41 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLK 41 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 3455888889999999999999999999998877653
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.76 E-value=20 Score=32.13 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
..+...+..|...|.+.+|+.+.++++.. +|..-..+..+-.++...|+--.+...|++.-+..+.-+|-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 44556678899999999999999999987 6666778888899999999999999999988877776665543
Q ss_pred ch
Q 008016 326 GR 327 (581)
Q Consensus 326 ~~ 327 (581)
..
T Consensus 352 dd 353 (361)
T COG3947 352 DD 353 (361)
T ss_pred ch
Confidence 33
No 374
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.76 E-value=23 Score=31.69 Aligned_cols=133 Identities=16% Similarity=0.066 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (581)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (581)
.-++-++-+.+.++-.+.. + .......++.++|..|.+.++.+.+.+++.+.+.-.... .-..+...+-..+|.
T Consensus 90 kneeki~Elde~i~~~eed---n-gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~ 163 (412)
T COG5187 90 KNEEKIEELDERIREKEED---N-GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGL 163 (412)
T ss_pred hhHHHHHHHHHHHHHHhhc---c-cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHH
Confidence 3345556666666555442 2 234456788999999999999999999999887765433 334455556667787
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|..+.-.++.++.....++ +....+..+...++ .|.......++.+|..++-..+..+
T Consensus 164 ~y~d~~vV~e~lE~~~~~iE---kGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 164 IYGDRKVVEESLEVADDIIE---KGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hhccHHHHHHHHHHHHHHHH---hCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccc
Confidence 77665555555444444433 32111222222333 3555566778888888887776644
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.93 E-value=1.4 Score=26.51 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 546 KKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 546 ~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
..||..|...|+.+.|.+++++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
No 376
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.93 E-value=9.3 Score=26.43 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ 151 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~ 151 (581)
.....+...|..+-+.|++++|+.+|..+++.+...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 445568888999999999999999999999987664
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.90 E-value=1.8 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
..||..|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 378
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.88 E-value=8 Score=26.58 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (581)
+..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3445556667788999999999999999988776444555544
No 379
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.47 E-value=1.5 Score=41.56 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
++..|.+++.-.|++. .|++.++..---...++....+-.+.+++.+|.+|..+++|.+|++.|...+..-.+.+
T Consensus 124 SligLlRvh~LLGDY~-~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYY-QALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHH-HHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566888999999999 88888765422222233334456678899999999999999999999999988776665
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.46 E-value=36 Score=32.75 Aligned_cols=139 Identities=17% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHhhcC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY--VYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
..-...+..++..++|..|..+++...... ++... ...+..+..+| ....++.+|.+.++........+
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl-------~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l- 202 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRL-------PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL- 202 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence 346778889999999999999999987631 11122 34555665555 55778899999998865542110
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
......+..+.... ++...+.....................+...|.--...|+|+.|...+-+++++..
T Consensus 203 ---~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 203 ---NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred ---HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 00011111111111 11111111111111100000122233333334444568999999999999988753
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.44 E-value=1.8 Score=41.05 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
-+...|.+++.-.|+|..|++.++..---.+..+..-.+-...+++.+|.+|..+++|.+|++.|...+-...+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999887653211111222234445678899999999999999999999998875443
No 382
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=31 Score=31.74 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=65.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 008016 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (581)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (581)
+..+.++.++|++++++.++..... ..+..+..+....|+++...|+..++.+.+...-.......+ -.+.+-..
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~ 158 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSS 158 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhh
Confidence 3455679999999999999887653 223455667788999999999999999999988777665532 23333344
Q ss_pred HHHHH-HHHHHccCHHHHHHH
Q 008016 418 LLNLA-ASYSRSKNFVEAERL 437 (581)
Q Consensus 418 ~~~la-~~~~~~g~~~~A~~~ 437 (581)
++.++ ..|...|++......
T Consensus 159 fY~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 45554 455566777655433
No 383
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.03 E-value=0.78 Score=43.24 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 511 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 511 (581)
+++-+.+..+++.||++.......|-+|..+|+++.-+++++-|+++.++.+.|-+|.+...+...+.++..
T Consensus 320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 456667778899999988766677889999999999999999999999999999999998888888877653
No 384
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=84.96 E-value=1.7 Score=24.12 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 544 TLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
+++.+...|.+.|++++|.++|+++.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677888999999999999999998653
No 385
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=84.89 E-value=2.7 Score=37.46 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
.....-...+....+.|+.++|..+|+-++.+ .|..+.++..+|......++.-+|-.+|-+++.+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 34444667778889999999999999999988 88889999999999988899999999998887764
No 386
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.93 E-value=17 Score=27.69 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+..+|....+.+++-.++-.|++|+.+.++....+... .+.+..+||..+..+|+.+=.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999988763222111 34567899999999999999999999887765543
No 387
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.35 E-value=62 Score=33.83 Aligned_cols=228 Identities=15% Similarity=0.103 Sum_probs=119.5
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
++........|.......|++++....-..+..+. +..|.+..-|..--......++-.++...|++++.-...+
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v- 183 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV- 183 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc-
Confidence 55555667777888888999998877777777665 3334443322221112223477888888999887643211
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+.....+......+..+...++++.....|.+++........ ........+...-..|...-..++-..++...+..-
T Consensus 184 -~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 184 -PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred -hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 000122333344444556678899999999999987544332 222334455555555655555566666666655531
Q ss_pred HHHcCCCCchHHHHHHHHH--H-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLA--H-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (581)
-+.......+.... . ......+++.|..-+.+.+....+. ....+.....+..+.......|+...-..
T Consensus 262 -----~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~---~q~~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 262 -----LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL---VQKEPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred -----chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 11111122222222 1 1123345555555555544444432 11122223334455555556666554444
Q ss_pred HHHHHH
Q 008016 395 LLEECL 400 (581)
Q Consensus 395 ~~~~al 400 (581)
.++++.
T Consensus 334 ~~eR~~ 339 (881)
T KOG0128|consen 334 IEERAV 339 (881)
T ss_pred HHHHHH
Confidence 444443
No 388
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.10 E-value=13 Score=25.71 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
....++..|...-..|++++|+.+|.++++.+....
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~ 40 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL 40 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 445688888889999999999999999999887765
No 389
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=43 Score=31.70 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHH
Q 008016 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (581)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (581)
..++...++++|..+-+..+....-. +...-+--.+.+++.+..+|...|+...-...+...+... .+..+....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence 44567788999988877765432110 0011133345677788888888999887777777666554 334555666667
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
.+.+-+.|...+.|+.|.....+..-- . ...+...+..++.+|.+..-+++|..|.+++-+|+...
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 788889999999999998877665311 0 11223678889999999999999999999999998763
No 390
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.72 E-value=2.4 Score=22.73 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
+|+.+-..|.+.|++++|.+.+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788899999999999999998765
No 391
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=82.29 E-value=2.7 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
.++..+...+.+.|+++.|..+|+++.+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35778889999999999999999988763
No 392
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.08 E-value=37 Score=30.35 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 503 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 503 ~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
.+++.+....+..+++-..+.+.+++.... ++...-..+..+..+|..+...+++.+|..+|-..
T Consensus 89 anl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 455666666665553444556666664443 32222333456778899999999999999888654
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.61 E-value=25 Score=27.38 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016 343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (581)
Q Consensus 343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (581)
|....-..++++++..+...... .+++....++...+.. .+.+.++|...... ..|. ..+..|...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y-~nD~RylkiWi~ya~~------~~~~~~if~~l~~~---~IG~---~~A~fY~~wA 106 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERY-KNDERYLKIWIKYADL------SSDPREIFKFLYSK---GIGT---KLALFYEEWA 106 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGG-TT-HHHHHHHHHHHTT------BSHHHHHHHHHHHH---TTST---TBHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhh-cCCHHHHHHHHHHHHH------ccCHHHHHHHHHHc---CccH---HHHHHHHHHH
Confidence 55566677889998887653212 2344444454444432 23777777765432 2333 3455777889
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 008016 423 ASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al 442 (581)
..+...|++++|.+.|+.++
T Consensus 107 ~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 394
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=80.38 E-value=41 Score=29.77 Aligned_cols=183 Identities=10% Similarity=0.024 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
++..|+..-+.|+|++.+....++.+... +..-...-.+.+..+|-. .|....+...+......... ...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-------~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~--~~~ 74 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-------SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RGN 74 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhc--cCc
Confidence 55677777888999999998888765310 012233344556666644 46667777666653332111 111
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhc-----CC-----HHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE 266 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~ 266 (581)
+... .+..-|. ..=-++-...+...+.+.....-+.. ...+..+-..|..|... |+ .++|..
T Consensus 75 ~~~~----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDHV----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1111 1111111 11123445566667776655433321 22333333444444322 22 458899
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016 267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY 317 (581)
Q Consensus 267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 317 (581)
.|+.|+++....+.+.+|.......+.+..|+. .++.++|....+++.+-.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999998876778888777777776666655 699999998887777653
No 395
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=79.94 E-value=60 Score=31.38 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH--------H--HHHHHHHHHHHhccCHHHHHHHHHH
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL--------D--AILLHMGSMYSTLENYEKSMLVYQR 228 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (581)
+..+....-.|...++.+.+++|++.+.......+... .+.. . ..-...+.++...|++.++...+++
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~--~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTE--SPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccc--cchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 34455556678888999999999998877555432211 1110 1 1123457788899999999999998
Q ss_pred HHHHH
Q 008016 229 VINVL 233 (581)
Q Consensus 229 al~~~ 233 (581)
.+...
T Consensus 154 i~~~l 158 (549)
T PF07079_consen 154 IIERL 158 (549)
T ss_pred HHHHH
Confidence 87654
No 396
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=85 Score=33.01 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.|.-|+.+.+. .+.+......+....|..++..|++++|...|-+++..
T Consensus 349 ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34444455444 35566777788888999999999999999999988764
No 397
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.78 E-value=7.6 Score=34.79 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+.-....|+.++|..+|+.|+.+ .|....++..+|......++.-+|-.+|-+|+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 44455689999999999999998 5666778889999998889999999999999876
No 398
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.29 E-value=3.6 Score=35.15 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
....|+.+.+.+.+.+++.+. |.+...|+.+|....+.|+++.|...|++.+++
T Consensus 5 ~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 445788999999999988876 788888999999999999999999999999986
No 399
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.21 E-value=17 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAG 155 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 155 (581)
..++..|...-..|++++|+.+|.++++.+...+...
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 4577888888999999999999999999877765333
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.12 E-value=29 Score=27.17 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
.....+.+++++++....+.+ +.+.+++...+ . ..+......++.++..+++.++|++++.+.+..++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344567788888888766554 45555655443 1 222334456788999999999999999999988774
No 401
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.12 E-value=18 Score=25.00 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
.....++..|...-..|++++|+.+|.++++.+....
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~ 42 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI 42 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3445577888888899999999999999999887765
No 402
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.01 E-value=10 Score=34.92 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 008016 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182 (581)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 182 (581)
+....+..++..|+..+..+++++|.+.|..|..+...++ +..+.....+++..|..++..++.....
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~--Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY--GEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778899999999999999999999999999998887 4456777888888888888877666554
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.91 E-value=64 Score=31.08 Aligned_cols=140 Identities=16% Similarity=0.064 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG--ITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
....+.-....++|..|...+...... ..+. .. ...+..++ -.++..-++++|.+.++.........
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----- 202 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR----LPGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----- 202 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence 344566677899999999999998763 1111 11 33444554 44567899999999999887643210
Q ss_pred hhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 496 ~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
......+..+..+. ++...+...............+.....+..-|.--..+|+|++|...+-+++++.-..
T Consensus 203 ~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 203 NQEREGLKELVEVL--------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred HhHHHHHHHHHHHH--------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 01112222222222 1111111111111110000012233333333444456899999999999999886554
Q ss_pred h
Q 008016 576 K 576 (581)
Q Consensus 576 ~ 576 (581)
.
T Consensus 275 r 275 (379)
T PF09670_consen 275 R 275 (379)
T ss_pred H
Confidence 3
No 404
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=78.76 E-value=5.2 Score=21.97 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
+|+.+-..|.+.|++++|.++|.++.+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788889999999999999998765
No 405
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.53 E-value=10 Score=36.32 Aligned_cols=129 Identities=10% Similarity=0.097 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
...-....+..|+.-.|-.-...++.. .|..+......+.++...|+|+.+...+..+..+.. ..+
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~----------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~---s~~- 357 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRN----------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG---TTD- 357 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHh----------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc---CCc-
Confidence 333444456667776666655555543 333344445567788889999999888877665542 111
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
.+...+-......|++++|.....-.+.- .-..|+ +...-+......|-++++..++++.+.+
T Consensus 358 ---~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-----eie~~e---i~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 358 ---STLRCRLRSLHGLARWREALSTAEMMLSN-----EIEDEE---VLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ---hHHHHHHHhhhchhhHHHHHHHHHHHhcc-----ccCChh---heeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 12333445566778888887766554431 112222 2222233444567778888877777665
No 406
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.18 E-value=66 Score=30.84 Aligned_cols=115 Identities=12% Similarity=0.003 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhc
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNR 279 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~ 279 (581)
+...|.+......|++|+.++-.|-+.+-.... ......+..-..+.++|+...+ .+.|..-+..+-+-+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445566777778888888877766554322100 0001122333445566766554 3455555555544444333
Q ss_pred -----------CCCChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 280 -----------GTESADLV---LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 280 -----------~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
|+..|..+ ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 34445443 344566999999999999999999998876654
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.97 E-value=4.9 Score=22.95 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCChhhhHHHHH--HHHHHH
Q 008016 543 LTLKKVVSYLDKLGRKEEKFPLKK--RLSNLR 572 (581)
Q Consensus 543 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~l~ 572 (581)
+.+..+|-.+..+|++++|+..|. -+..+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999944 555443
No 408
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.71 E-value=5.7 Score=34.02 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=50.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192 (581)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 192 (581)
....+.|+.+.|.++|.++++. .|+....+..+|......|+++.|...+++.+++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~l----------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL----------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc----------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456789999999999999987 78888999999999999999999999999988764
No 409
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.05 E-value=9 Score=35.31 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 267 (581)
-+...|+-...++++++|...|..|..+....+|..+.....+++..|..++..++....+-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999999999999998888776543
No 410
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=75.94 E-value=15 Score=25.57 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 505 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 505 la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
.|..+...|+.+ +|+.+|++++....+.+.-..+ .......|++|..+-+++......
T Consensus 14 kaL~~dE~g~~e-~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~~~~ 71 (79)
T cd02679 14 KALRADEWGDKE-QALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTNLNM 71 (79)
T ss_pred HHhhhhhcCCHH-HHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHHHHH
Confidence 333444557777 9999999999887776554433 123344566666666666554443
No 411
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.21 E-value=43 Score=31.97 Aligned_cols=117 Identities=12% Similarity=-0.055 Sum_probs=64.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-CCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhc
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNY-MSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLITEKYK 407 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~ 407 (581)
+...|........|++|+.++-.|-+.+..... +-.....++.+-..+.++|+...+ .+.|..-+..+-+-+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 344445555555566666555554443322100 000011112222445566776654 4566666655555544444
Q ss_pred C-----------CCChHHH---HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 408 G-----------KEHPSFV---THLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 408 ~-----------~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
| +..|..+ ..+..-|.+.+.+|+-++|.++++.+.....+.
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 3 3445443 344456888999999999999999998876665
No 412
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=74.73 E-value=25 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
...+...|...-..|++++|+.+|.++++.+....
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~ 40 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL 40 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 34477788888889999999999999999887765
No 413
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=74.48 E-value=26 Score=24.36 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
...|.-.-..|++++|+.+|.++++.+.......++
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 334455667899999999999999987664333333
No 414
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=74.01 E-value=10 Score=20.75 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
.+|+.+...+.+.|+++.|..+++.+.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3577788899999999999999998765
No 415
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.14 E-value=1.1e+02 Score=30.79 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=101.6
Q ss_pred hccCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--------
Q 008016 215 TLENYEKSMLVYQRVINVLESR----YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE-------- 282 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------- 282 (581)
....|++|...|.-+....... .-..+|..+..+..++.++..+|+.+-|..+.++++-..+....+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3456778888777776653211 0123466788899999999999999999999999988776654321
Q ss_pred -----Chh---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHH-HHCCCHHHHHHHH
Q 008016 283 -----SAD---LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAK-CANGNAEEAVELY 352 (581)
Q Consensus 283 -----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~-~~~g~~~~A~~~~ 352 (581)
.+. ...+++..-..+...|-+..|.++.+-.+.+ .+. +|.. ...+..+| .+..+|.=-++++
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~---~l~~ID~~ALrareYqwiI~~~ 401 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLG---ILYLIDIYALRAREYQWIIELS 401 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchh---HHHHHHHHHHHHHhHHHHHHHH
Confidence 122 2223344445566789999999988877765 222 3322 22233333 2334444444444
Q ss_pred HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 008016 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEECLLIT 403 (581)
Q Consensus 353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 403 (581)
+..-.. .+. . .-+.+... ..+|..|..... -..|...+.+|+...
T Consensus 402 ~~~e~~-n~l---~-~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 402 NEPENM-NKL---S-QLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHhh-ccH---h-hcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 433111 110 1 11111211 446667766655 567777888887654
No 416
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=72.94 E-value=27 Score=34.17 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (581)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (581)
.+.++.....+...+-.+....|+..|.+++.. .|.....+.+.+.++++.+=...+...+.......
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al-- 438 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL-- 438 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc--
Confidence 344555555665555566677888888888765 67777888888888877654443333333322221
Q ss_pred cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 008016 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (581)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (581)
.-+|....+++.|+.++...+++.+|+.....+.
T Consensus 439 --rln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 439 --RLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred --cCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 3346777889999999999999999998776543
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=72.89 E-value=56 Score=27.46 Aligned_cols=114 Identities=21% Similarity=0.125 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
...+......|++++|...++++.+...+.-. ..+|.. +.-|.+-..+..|-+|..++.-...- ....++..
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel----~~ag~~~~a~QEyvEA~~l~~~l~~~--~~ps~~EL 106 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPEL----YFAGFVTTALQEYVEATLLYSILKDG--RLPSPEEL 106 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHhhcchHHHHHHHHHHHHHHhcC--CCCCHHHc
Confidence 34455667889999999999988776654410 122222 12233334455666776655433221 00001100
Q ss_pred c--hHHHHHHH----------HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 008016 455 S--ISFPMLHL----------GITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 496 (581)
Q Consensus 455 ~--~~~~~~~l----------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 496 (581)
. .......+ .......|++++|...++-+-.++..+..-+.|
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~fdyP 160 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEFDYP 160 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0 11112222 223456789999998888777777666544444
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=72.40 E-value=22 Score=31.03 Aligned_cols=109 Identities=16% Similarity=0.012 Sum_probs=62.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC---h-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDS---L-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539 (581)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~ 539 (581)
-.-.+..|+++.|+++...+++....+...-. | -+++....-+......|+.- +. .++.....+. ....-...
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~-e~-~~~~~~~~l~-~~~dmpd~ 166 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV-EP-YFLRVFLDLT-TEWDMPDE 166 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC-Ch-HHHHHHHHHH-hcCCCChH
Confidence 33456899999999999999986433321111 1 12223333445555666643 21 1233333332 22222233
Q ss_pred HHHHHHHHHHHHHH---------HcCChhhhHHHHHHHHHHHHHH
Q 008016 540 EVMLTLKKVVSYLD---------KLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 540 ~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
-.+..+..+|..+. ..++...|..++++|+.+.++.
T Consensus 167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 44455666777673 4567889999999999997653
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=91 Score=29.69 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNR-GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC 333 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 333 (581)
+....++.+|...-+..+.-..... ..-+--.+..|+.+..+|...|+...-...+..-+.... ++.+....+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt--Lrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT--LRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh--hcCcchhHHHHHH
Confidence 3455778888777665544321100 000123356777888888889997777776666555432 3344555666777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 334 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
.|-..|...+.|+.|..+..++.-- ....+...+..++.+|.+..-+++|..|.+++-+|+...
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~p------e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYP------EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCc------cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 7888899999999998877664311 112234567777889999999999999999999998764
No 420
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=72.11 E-value=1.9e+02 Score=33.18 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH---CC-------------------
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NG------------------- 343 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g------------------- 343 (581)
..+..-.+|..+...|++.+|+..|.+++...+.. .|+...+.++-.++.+..- .|
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 34566778999999999999999999999998875 4555555555444332211 00
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHhhcc--CC-CCChHHHHHHHHHHHHHHHc
Q 008016 344 ----------------------------------NAEEAVELYKKALRVIKDSNY--MS-LDDSIMENMRIDLAELLHIV 386 (581)
Q Consensus 344 ----------------------------------~~~~A~~~~~~al~~~~~~~~--~~-~~~~~~~~~~~~la~~~~~~ 386 (581)
-.+.=.+.+++++..+.+... .. ........+....+.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 011122334444444443210 00 11223345556677777776
Q ss_pred C--------------------ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 008016 387 G--------------------RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 387 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (581)
. .-.++..++.++....... -...+....+..+|.+|...|-..++-=+++.++....
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 6 6777778888877764332 23455678899999999999998888777777766543
No 421
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.59 E-value=77 Score=28.51 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh---hHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI---EEVAILDIIA-LGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
+-..+..+.-..||..|++..+++++..........+.. +.-..+..+| .++..++++.++..+.-+....-+++
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl- 116 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL- 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC-
Confidence 444556778888999999999999987643211111111 2222333343 35677899999988876654443222
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
.|.+. -.-...|.+.|++....+.-..-+..-. +...+. ...+-..+-.++.-.|.+++|+++.
T Consensus 117 --PpkIl---eLCILLysKv~Ep~amlev~~~WL~~p~---Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 --PPKIL---ELCILLYSKVQEPAAMLEVASAWLQDPS---NQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred --CHHHH---HHHHHHHHHhcCHHHHHHHHHHHHhCcc---cCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 23333 3334467888998887776665554211 111111 1222233445556679999999886
No 422
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.03 E-value=60 Score=27.00 Aligned_cols=134 Identities=9% Similarity=-0.012 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhc-----cC--HHHHHHHH
Q 008016 159 IEEVAILDIIALGYVY-----IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL-----EN--YEKSMLVY 226 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~--~~~A~~~~ 226 (581)
...+...+.+|.-++. .++...|++.+..+-.. ....+...+|.+++.- ++ ..+|++++
T Consensus 65 n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~ 135 (248)
T KOG4014|consen 65 NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYM 135 (248)
T ss_pred cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHH
Confidence 3445555666654432 45677888877765431 2223455666666532 33 67888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh------------------------cCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGS------------------------IGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 227 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------------------------~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
.++.++. ...+.+.|...|.. ..+.++|.++--+|-++
T Consensus 136 traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------- 197 (248)
T KOG4014|consen 136 TRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------- 197 (248)
T ss_pred HHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--------
Confidence 8876641 13344444444433 24556666665555544
Q ss_pred ChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHc
Q 008016 283 SADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 321 (581)
..+.+..++..+|.. -.+.++|..+-.+|.++.+..-
T Consensus 198 --~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 198 --DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred --CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 234555666666643 2467889999999998877653
No 423
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=70.28 E-value=65 Score=27.10 Aligned_cols=111 Identities=19% Similarity=0.095 Sum_probs=56.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (581)
+...+......|++++|...++++.+...+....-...|.. +.-|.+-..+..|-+|..++.-.-.- .-.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel----~~ag~~~~a~QEyvEA~~l~~~l~~~-----~~ps 102 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPEL----YFAGFVTTALQEYVEATLLYSILKDG-----RLPS 102 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHhhcchHHHHHHHHHHHHHHhcC-----CCCC
Confidence 34455556788999999999999888766542111111111 11122222334455555544322111 0011
Q ss_pred hH-----HHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016 412 PS-----FVTHLLNLAA----------SYSRSKNFVEAERLLRICLDIMTKTVGP 451 (581)
Q Consensus 412 ~~-----~~~~~~~la~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (581)
+. .......+|+ .....|++++|...++-+-.++.....-
T Consensus 103 ~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~f 157 (204)
T COG2178 103 PEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELMEF 157 (204)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1112222222 3456788999988887776665554433
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.76 E-value=51 Score=25.68 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016 217 ENYEKSMLVYQRVINVLESR-YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (581)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (581)
|.-..-...+++++...... .-.+++....++...+.... .+.+.|...... ..| ...+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~---~IG---~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK---GIG---TKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH---TTS---TTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc---Ccc---HHHHHHHHHHHH
Confidence 45555667888888776432 12334555666655554322 777777765543 222 345677888899
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008016 296 LFIKEGKAVDAESVFSRIL 314 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al 314 (581)
.+...|++++|.++|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 425
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.72 E-value=91 Score=28.59 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
..+..+...||.+|.+.++|..|-..+.-. .........+.......+..+|.+|.+.++..+|..+..++--.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 445667788999999999999988766431 110000001122345677889999999999999999988875443222
Q ss_pred CCCCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 450 GPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL 484 (581)
Q Consensus 450 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 484 (581)
.++. ....-...|+++-..++|-+|..-|-+..
T Consensus 178 --~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 --SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 12222344667777788877766665543
No 426
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=69.19 E-value=35 Score=23.58 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAIL 165 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 165 (581)
...++..|...-..|++++|+.+|.++++.+...... ..++..-..+
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~-e~~~~~k~~l 52 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHY-ETDAQRKEAL 52 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh-CCCHHHHHHH
Confidence 4457888888899999999999999999988776522 2344443343
No 427
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.66 E-value=36 Score=23.53 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
....++..|...-..|++++|..+|.++++.+...+
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~ 40 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV 40 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 445578888888899999999999999999887754
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.51 E-value=37 Score=23.56 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 418 LLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
+...|.-.-..|++++|+.+|..+++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344555567789999999999999998766
No 429
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.08 E-value=92 Score=28.04 Aligned_cols=136 Identities=17% Similarity=0.123 Sum_probs=78.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh---HHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS---IMENMRIDL-AELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
+-.-+....-..||..|++.++++++..........+.. .+-..+..+ ..++.++|++.+...+.-+-...-++.
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl- 116 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL- 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC-
Confidence 334455566677899999999999998733110111111 111111222 346778999999888765543332221
Q ss_pred CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-----HcCChHHHHHHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-----HLNRDKEAEKLVL 481 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~ 481 (581)
.| .++..-..+|.+.|++....+.-..-+.- +++.... -+..+++.|. =.|.+++|+++..
T Consensus 117 ---Pp---kIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 117 ---PP---KILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ---CH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCch-hhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 22 23444456788999988877665554441 2333322 2455555554 4799999998773
No 430
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.82 E-value=2e+02 Score=31.82 Aligned_cols=185 Identities=12% Similarity=0.039 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------HH-------cCCCCc---hH-HHHHHHHHHHHHHCCCHH
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYT----------KV-------YGENDG---RV-GMAMCSLAHAKCANGNAE 346 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------~~-------~~~~~~---~~-~~~~~~la~~~~~~g~~~ 346 (581)
.....+|.+|...|+..+|+.+|.+|..-.- .. ..++.+ .. ...|.....++...+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 3445678889999999999999999865311 10 001111 11 333444455666667777
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (581)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (581)
.+..+..+|++. .+++.+..+.++.++=.-+...|.+-+|...+-+ .++......++..+..++.
T Consensus 1001 ~vcQlA~~AIe~------l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 1001 EVCQLAVKAIEN------LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------NPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHHh------CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc---------CCcHHHHHHHHHHHHHHHH
Confidence 777777777765 5667777777777777777888888888765433 1333334457777888888
Q ss_pred HccCHHHHHH-----HHHHHHH-HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHH
Q 008016 427 RSKNFVEAER-----LLRICLD-IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK-LVLEALYIR 487 (581)
Q Consensus 427 ~~g~~~~A~~-----~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~ 487 (581)
..|+.+.-.. +-++... +.++............|.-|-..+...+++.+|-. +|+.+..+.
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 8887654322 1122222 11111111111122233344445667888887654 566665543
No 431
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=67.50 E-value=1.2e+02 Score=29.10 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=91.1
Q ss_pred CChHHHHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcch-
Q 008016 387 GRGQEGRELLEECLLITEKYK-----GKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSI- 456 (581)
Q Consensus 387 g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~- 456 (581)
.++++|..+|..+.....+.. .+...+...+....+.+|.. .++.+.-+.+.++-+++.+.....-+|..
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 457777777776666554431 12223334455555555443 36777888888888887776654444432
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc-----CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016 457 ----SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF-----GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL 527 (581)
Q Consensus 457 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~ 527 (581)
...++.+|.+|.. .+++..... +...|.. ..+..+.... ..|+.+|+.-+
T Consensus 218 ~~~~rql~fElae~~~~-------------i~dlk~~~~~~~~~~~~~~~~-~~~~kin~l~-------~~ai~~y~~fl 276 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSE-------------IMDLKLEKLDEPQNDNEPPDD-HALKKINQLC-------SKAIKYYQKFL 276 (371)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhcccCCCCCh-HHHHHHHHHH-------HHHHHHHHHHH
Confidence 1123334443332 222221111 1222211 1111111111 17788888877
Q ss_pred HHHHHhcC---------CCCHHHHHHHHHHHHHHHHc---------CChhhhHHHHHHHHHHHHHHhh
Q 008016 528 RIQEREFG---------SESEEVMLTLKKVVSYLDKL---------GRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 528 ~~~~~~~~---------~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
..+...-+ ........+++.+|.+|.+. +....++..|+.++...+++..
T Consensus 277 ~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 277 DSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 77653210 01134567788899988876 5567788888888888877665
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.34 E-value=15 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 150 (581)
...++..|...-..|++++|+.+|.++++.+..
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 345777888888899999999999999998654
No 433
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.38 E-value=1e+02 Score=27.95 Aligned_cols=62 Identities=21% Similarity=0.124 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (581)
|..+|.+|..+ .|.....++.||.++...|+.-.|+-+|-+++.. ..|. ..+..+|...+.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999998 6777899999999999999999999999998853 2333 5667777777766
No 434
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.14 E-value=43 Score=23.44 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=24.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (581)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (581)
...|..+-..|+.++|+.+|++++....+...-.
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444455666899999999999999887765433
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.13 E-value=45 Score=33.39 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=36.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
+..+.|+++.|.++..++-. ..-|..||.+....|++..|.+++.++.+.
T Consensus 646 lal~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 44577888888776655322 235778899999999999999999888653
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.52 E-value=23 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQ 227 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~ 227 (581)
.+..+|-.+..+|++++|+..++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46778999999999999999954
No 437
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=65.25 E-value=73 Score=25.85 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=81.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL 296 (581)
Q Consensus 217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 296 (581)
++-+-|...++..+... +..-.-.+...+...-...|.+.+|.+++.+.++.- +..+...+|..++.+
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHH
Confidence 55556666666644421 222222334444555667899999999999988763 345667788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.....+-..-..-=++..+......++..|..+.+-..-+..-.+.|.-.+|+..++..+..
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 77665433333333333333333344566666666666666677889999999999887653
No 438
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=64.84 E-value=1.6e+02 Score=29.59 Aligned_cols=70 Identities=26% Similarity=0.272 Sum_probs=47.4
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 375 MRIDLAELLHI--VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 375 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
++.+||.+-.. ...-..++.+|.+++...+..++..|. .-|..+|..+.+.+++.+|+..+-++-+....
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544332 233556789999999999888764443 35777899999999999999999888776543
No 439
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.35 E-value=1.7e+02 Score=29.85 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
..++.+-+.-.++..+|..++++|...+...... ..+...+.....++.+|....+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3445666777888999999999999988765321 122345778889999999999999999999998876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
+|........+-......|.-++|+...........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 444455566667777788999999988877766543
No 440
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.03 E-value=45 Score=23.02 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=24.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
.|.-+-..|++++|+.+|.++++.+.......++
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4444566899999999999999988765333333
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.87 E-value=42 Score=22.59 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
+...|.-.-..|++++|+.+|.++++.+....
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33445556778999999999999998766543
No 442
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.57 E-value=1.8e+02 Score=29.36 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHH----cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------
Q 008016 300 EGKAVDAESVFSRILKIYTKV----YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS------------- 362 (581)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 362 (581)
...|++|...|.-+.....-. .-..+|..+.++..++.+...+|+.+-|..+.++++=.++..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345778888887776654211 012357778889999999999999999999999998766653
Q ss_pred -ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016 363 -NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 363 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
.+..+.+..+..+++..-..+...|-+..|.++++-.+.+. +. +|.- +.+.+-....+..+|+=-+++++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd-----p~eDPl~--~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD-----PSEDPLG--ILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CcCCchh--HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11122223333344455556678899999999988777652 22 3322 222232333444555555555544
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q 008016 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIR 487 (581)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~ 487 (581)
.-.. .+. ..-|.... -..+|..|..... -+.|...+.+|+.+.
T Consensus 404 ~e~~-n~l--~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 404 PENM-NKL--SQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHhh-ccH--hhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 3221 111 11233332 2356667766655 457888888887765
No 443
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.31 E-value=1.8e+02 Score=29.28 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 303 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
-..++.+|.+++...+..+++.| ..-|..+|..|++.+++.+|+..+.++-.....-
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45668888899988888766433 2346668888999999999999988887776653
No 444
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.94 E-value=1.7e+02 Score=28.99 Aligned_cols=90 Identities=18% Similarity=0.071 Sum_probs=59.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (581)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (581)
+-.++....++.-.+.++.+.+...+ .-.++..++.+|... ..++-..++++.++. +-+...
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~e---------~kmal~el~q~y~en-~n~~l~~lWer~ve~--------dfnDvv 133 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYGE---------SKMALLELLQCYKEN-GNEQLYSLWERLVEY--------DFNDVV 133 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcc---------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--------cchhHH
Confidence 33444444555556667777776632 224778889999887 446666777777664 222233
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.-..|+..|.. ++-+.+..+|.+++...
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 44567776666 89999999999998754
No 445
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.50 E-value=1.3e+02 Score=27.22 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016 434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR 511 (581)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 511 (581)
|+.+|.+|..+ .|.....++.||.++...|+.-.|+-+|-+++-. ..|. ..+..+|..++.+
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 67899999986 5788899999999999999999999999888742 3333 4566777777766
No 446
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=1.8e+02 Score=29.43 Aligned_cols=111 Identities=20% Similarity=0.096 Sum_probs=69.1
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR-VLR 528 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~-a~~ 528 (581)
++.+|....... +...+...++...+.-....++.. +|....+..+|+......|... .+...+.. +..
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~-~~~~~~~~~a~~ 130 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQF-LALADISEIAEW 130 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Confidence 345555544444 666666777777777666666542 3455567777887777766655 44433333 222
Q ss_pred HHHHhcCCCCHHHHHHH------HHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 529 IQEREFGSESEEVMLTL------KKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 529 ~~~~~~~~~~~~~~~~~------~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
. .|.....+ +.+++.....|+..++....+++..+.+++.+.
T Consensus 131 ~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 131 L--------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred c--------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 1 12222222 226888888899999999999999888887554
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.39 E-value=1.2e+02 Score=26.72 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=59.2
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcc-CC-CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 008016 339 KCANGNAEEAVELYKKALRVIKDSNY-MS-LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416 (581)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~~~-~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 416 (581)
.+..|+++.|+++...+++....... +. .-+..++.-...-+......|+.-+. .++.....+.. ...-.....+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~-~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTT-EWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHh-cCCCChHHHHH
Confidence 46789999999999999987433200 00 11223333334445555566653222 12333333322 11222334455
Q ss_pred HHHHHHHHHH---------HccCHHHHHHHHHHHHHH
Q 008016 417 HLLNLAASYS---------RSKNFVEAERLLRICLDI 444 (581)
Q Consensus 417 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~ 444 (581)
.+...|..+. ..++...|..++++|+.+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 6667777663 456788999999999986
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.88 E-value=88 Score=30.37 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 150 (581)
..+...+..+..+...|++.+|+..|+.+|....-
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l 236 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPL 236 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhe
Confidence 34455677888999999999999999999876543
No 449
>PRK09169 hypothetical protein; Validated
Probab=58.50 E-value=4.1e+02 Score=32.29 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=5.5
Q ss_pred HHHHHHHHHcCC
Q 008016 377 IDLAELLHIVGR 388 (581)
Q Consensus 377 ~~la~~~~~~g~ 388 (581)
.|....+.+.++
T Consensus 586 AN~LnALSKWP~ 597 (2316)
T PRK09169 586 ANLLNALSKWPD 597 (2316)
T ss_pred HHHHHHHhhCCC
Confidence 344444445444
No 450
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=58.13 E-value=1.4e+02 Score=26.62 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=101.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEH 411 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (581)
..+|.+..+.++|++...+.+++++... +. .....-.+.++.+|- ..|....+...+.. ++......+ .
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~------~~-eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~--~ 74 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD------SE-ELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRG--N 74 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC------Cc-cCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccC--c
Confidence 4577888889999999999999877421 00 011112233444443 34666666666554 222111111 1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc--c-hHHHHHHHHHHHHH-----cCC-----hHHHHH
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ--S-ISFPMLHLGITLYH-----LNR-----DKEAEK 478 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~-~~~~~~~la~~~~~-----~g~-----~~~A~~ 478 (581)
... ..+..-|.. .=-++-.......+.+....+-|... . .+..+...|..|.- .|+ .+.|..
T Consensus 75 ~~~----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDH----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111 111111211 11234455666777776665544321 1 11122222333321 232 458899
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHH
Q 008016 479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQE 531 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~~A~~~~~~a~~~~~ 531 (581)
.|++|.++....+.|.||.......+.+..|.. .++++ +|..+.++++.-..
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~-~A~~lAk~afd~Ai 202 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPD-RACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Confidence 999999998877889999777666666666555 47777 88888777776543
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.72 E-value=73 Score=27.47 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=46.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI 191 (581)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (581)
..+..+.+.+...+|+...++-++. .|.++.....+-..+.-.|+|++|..-++-+-.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka----------kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA----------KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc----------CCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3445678888999999888877665 6777777777888889999999998888776554
No 452
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.17 E-value=1.6e+02 Score=27.16 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
.-.+..+..+-++.-..++++ ++..+.++..|+.- ...-..+|..+++++++..+
T Consensus 193 ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence 334444455555555556654 35555666555532 22335677777777776543
No 453
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=56.04 E-value=1.1e+02 Score=24.90 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (581)
Q Consensus 301 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (581)
++-+-|...++..+... +..-.-.+...+...-...|.+.+|..++.+.++.- .......+|..++
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk--------~YSeistsYaRi~ 136 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK--------EYSEISTSYARIN 136 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Confidence 44555555555544321 111112233334445567899999999999988762 3344455666777
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.+....++-.--..--++..+.......+..|.++.+-...+..-.+.|...+|++.++..+.
T Consensus 137 wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 137 WCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 766655443222222222333333333456777777777777778889999999999988776
No 454
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.58 E-value=35 Score=32.97 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=62.1
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
..|+...|-+-...++.-. +..|... ...+.+....|+|+.|...+..+-.+. +..+ .+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~-----~~~p~~i---~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~----~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-----QQDPVLI---QLRSVIFSHLGYYEQAYQDISDVEKII----GTTD----STLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-----CCCchhh---HHHHHHHHHhhhHHHHHHHhhchhhhh----cCCc----hHHHHHH
Confidence 4577766666555555521 2234433 345778888899998887776554332 2222 2344455
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 507 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 507 ~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
+.....|+++ +|...-+-.+.- .-..|+. ...-+-.-...|-+++|.-.+++.+.+.
T Consensus 365 r~~~~l~r~~-~a~s~a~~~l~~-----eie~~ei---~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 365 RSLHGLARWR-EALSTAEMMLSN-----EIEDEEV---LTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HhhhchhhHH-HHHHHHHHHhcc-----ccCChhh---eeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 5556666666 554433322210 0012222 2222223344556666666666666554
No 455
>PRK09169 hypothetical protein; Validated
Probab=54.46 E-value=4.8e+02 Score=31.81 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHCCCH
Q 008016 330 MAMCSLAHAKCANGNA 345 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~ 345 (581)
..+.|..+.+.+.++.
T Consensus 583 Q~LAN~LnALSKWP~~ 598 (2316)
T PRK09169 583 QGLANLLNALSKWPDE 598 (2316)
T ss_pred HHHHHHHHHHhhCCCc
Confidence 4445555555565543
No 456
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=54.24 E-value=73 Score=31.47 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=57.2
Q ss_pred hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 008016 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (581)
..+....|+..|.+++... +.....+.+.+.++.+.+ +.-.|+.-...++.+ +|....+++
T Consensus 386 y~~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~ 449 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHF 449 (758)
T ss_pred hhHHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHH
Confidence 3445566777777766532 344566667777776653 444455555555554 677788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008016 292 SLGSLFIKEGKAVDAESVFSRIL 314 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al 314 (581)
.|+.++...+++.+|+.....+.
T Consensus 450 ~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHh
Confidence 99999999999999998766544
No 457
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=53.77 E-value=86 Score=25.52 Aligned_cols=110 Identities=15% Similarity=0.048 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-----------------------------CC--ChhhHHHHHHHHHHH
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRG-----------------------------TE--SADLVLPLFSLGSLF 297 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~--~~~~~~~~~~la~~~ 297 (581)
...+......|+.++|...+.++......... .+ ...........+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 44577778899999999999998776542110 00 122334556677888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
...|+...|.+.++.+-.-..-..-.-+-.........+..+...|++.+|...+..+++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 8999999998887765210000000001112344456778889999999999999988753
No 458
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=53.34 E-value=47 Score=27.92 Aligned_cols=47 Identities=19% Similarity=-0.016 Sum_probs=38.9
Q ss_pred CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 008016 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497 (581)
Q Consensus 451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 497 (581)
...|....++.++..-|..+|++..|....+.+++-.....|.+||+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 34567778899999999999999999999999999998888888885
No 459
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=53.26 E-value=1.4e+02 Score=26.95 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.....++=..+...++++.|....++.+.+ . |....-+..-|.+|.+.|.+.-|++-+...++..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l-----~---P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDL-----N---PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhh-----C---CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 345566667788999999999999998884 3 3333345667999999999999999999877755
No 460
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=53.25 E-value=35 Score=27.77 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=63.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc--------------------------------chHHHHHHHHHHHHH
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE--------------------------------PLLDAILLHMGSMYS 214 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~ 214 (581)
..+......|+.++|...+.++....+....+. ..........+.-..
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 445666778999999999888777554211111 111233455667778
Q ss_pred hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
..|+...|...++.+-.-..-....-+-.........+..+...|++.+|...+..+++.
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 889999988877654210000000001123444556788899999999999999888753
No 461
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=52.04 E-value=76 Score=21.86 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|.-.-..|++++|+.+|.++++.+...
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999999987654
No 462
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.41 E-value=66 Score=25.63 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 176 (581)
..++..+...+..|++.-|..+.+.++.. +|++..+....+.++...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~a----------dp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFA----------DPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHHH
Confidence 34788889999999999999999998876 6666677766776665544
No 463
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=50.46 E-value=2.1e+02 Score=26.44 Aligned_cols=191 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
|+...+++..+...+..|+|..|-.++-..... ..+.++....++...-..-.-..+++.|.+-+.+..+......
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l----~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRAL----VSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHh----cCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRICL 442 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 442 (581)
...+-......+|. +-..+.-.=++.++...+-.+.-.....+..-.......+..|+..-.-. .+...+++-+-+.+
T Consensus 202 f~~~~~~l~qRtWL-iHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVI 280 (432)
T KOG2758|consen 202 FSTSAQQLQQRTWL-IHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVI 280 (432)
T ss_pred cccHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHH
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
+. ++..........-.+++-.=++++|...++++-+.
T Consensus 281 qq-------E~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 281 QQ-------ESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred HH-------hccccCCcHHHHHHHHhhccchHHHHHHHHHHHHH
No 464
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=49.88 E-value=2.9e+02 Score=28.00 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE-ALYI 486 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~~~ 486 (581)
++.++....... +...+...+....+.-.....+.. ++....+..+|+......|....+...+.+ +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455666655554 777777788887777777766652 566677888888888887777666655554 3221
Q ss_pred HHHHcCCCChhH---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 487 REIAFGKDSLPV---GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 487 ~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
. ++.... ...+..++......|+.. ++...++++..+.
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~~d~~ 172 (620)
T COG3914 132 S-----PDNAEFLGHLIRFYQLGRYLKLLGRTA-EAELALERAVDLL 172 (620)
T ss_pred C-----cchHHHHhhHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhh
Confidence 1 221111 111223688888888888 8888877777653
No 465
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=48.98 E-value=58 Score=27.36 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (581)
...|.....+.++..-|..+|+++.|+...+.+++-..+..+.++|+
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~ 180 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPD 180 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC
Confidence 45677788899999999999999999999999999888887777765
No 466
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.19 E-value=2.6e+02 Score=26.87 Aligned_cols=110 Identities=13% Similarity=-0.016 Sum_probs=62.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc--CCChHHHHHHHHHHH-------------
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--GEDDTKLLELLKRVL------------- 527 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~~A~~~~~~a~------------- 527 (581)
.+..++..++|..|...|.++.... ..++.......+..++..|... -++. +|.+.+++.+
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~-~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHE-EALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHH-HHHHHHhhccchhhhhhhhhhhh
Confidence 4557788999999999999887532 2222334445666676666544 4455 8888887211
Q ss_pred ------HHHHHhcC------------CCCHH--HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 528 ------RIQEREFG------------SESEE--VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 528 ------~~~~~~~~------------~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
........ ...|. ...-+..=|..-..+|+|++|...+-+++++.-.+.
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q~~ 280 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQIR 280 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00111 111111113333478999999999999988865543
No 467
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=47.86 E-value=4.4e+02 Score=29.49 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEAL 484 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~ 484 (581)
..|+.-+..++++-+|-+...+.+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 556667777788777777766654
No 468
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=47.73 E-value=4.3e+02 Score=29.24 Aligned_cols=114 Identities=6% Similarity=-0.008 Sum_probs=67.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (581)
+..++..-..|+.|+..|++...-. ++..+-.++.+..|.....+-.-..--..|.+|+.......+. +...--
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 554 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESF----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLE 554 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcC----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchH
Confidence 3455666667777777777654443 2333344566777776654432222225566666655555322 222334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (581)
|..-|.+|...|++++-++.+.-|++.+ +.+|......-.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 594 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDH 594 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHH
Confidence 6666778888888888888888888775 345655554433
No 469
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.69 E-value=2.4e+02 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
.+..+..+-++....++++ ++..+.++..|+.- ...-..+|+++++++++..+
T Consensus 195 WRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e 247 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGE 247 (556)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH
Confidence 3344455555566666666 55666666665543 22346678888888887643
No 470
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.62 E-value=83 Score=20.71 Aligned_cols=40 Identities=10% Similarity=0.300 Sum_probs=28.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 008016 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAV 148 (581)
Q Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 148 (581)
..++.+..++.--+.....+...|++++|.++..+..+..
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3344444455556667788999999999999999887654
No 471
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.89 E-value=1.9e+02 Score=26.04 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.......++=..+...++++.|....++.+.+ .|....-...-|.+|...|.+.-|++-+...++.+
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l--------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDL--------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh--------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 34556677778889999999999999999887 44445556677999999999999999988877653
No 472
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.91 E-value=1e+02 Score=21.18 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=22.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|.-.-..|++++|+.+|..+++.+...
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444556799999999999999987664
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.77 E-value=4.7e+02 Score=28.55 Aligned_cols=182 Identities=15% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH----
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG--QEGRELLEECLLITEK---- 405 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~---- 405 (581)
+..|+.+|...|++++|++++.+..+-.. ..+......+-.+...+...+.. +-..++-.-.++....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~------~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDS------DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccc------ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 66789999999999999999998776321 01222222333344444455544 3344433332221110
Q ss_pred hcCCCChHHHHHH-HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH--------cCChHHH
Q 008016 406 YKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--------LNRDKEA 476 (581)
Q Consensus 406 ~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A 476 (581)
.+..+........ .....-|......+-++.+++.++...+. ........++..|.. .++-+++
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~-------~~~~lht~ll~ly~e~v~~~~~~~~kg~e~ 653 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL-------TSTLLHTVLLKLYLEKVLEQASTDGKGEEA 653 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc-------cchHHHHHHHHHHHHHHhhccCchhccccc
Confidence 0111111011111 11122356677888899999998875322 111222333333332 1233355
Q ss_pred HHH--HHHHHHHHHHHcCCCChh-------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 477 EKL--VLEALYIREIAFGKDSLP-------VGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 477 ~~~--~~~a~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
.+. .++.....+ ....-+|. ....+...+.++.+.|+.+ +|+..|-..+.
T Consensus 654 ~E~~~rekl~~~l~-~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe-~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 654 PETTVREKLLDFLE-SSDLYDPQLLLERLNGDELYEERAILLGRLGKHE-EALHIYVHELD 712 (877)
T ss_pred hhhhHHHHHHHHhh-hhcccCcchhhhhccchhHHHHHHHHHhhhhhHH-HHHHHHHHHhc
Confidence 555 333332222 11111121 1344667788888999999 88888776554
No 474
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=98 Score=31.22 Aligned_cols=119 Identities=18% Similarity=-0.050 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 008016 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 496 (581)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 496 (581)
....++..+..+|-.++|++.. + +|+. .+ .+..+.|+++.|..+..++-. +
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s------------~-D~d~---rF---elal~lgrl~iA~~la~e~~s----------~ 666 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS------------T-DPDQ---RF---ELALKLGRLDIAFDLAVEANS----------E 666 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC------------C-Chhh---hh---hhhhhcCcHHHHHHHHHhhcc----------h
Confidence 3455666677777766665432 1 1221 12 344678899988877766522 1
Q ss_pred hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH------------HHH-HHHHHcCChhhhHH
Q 008016 497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK------------KVV-SYLDKLGRKEEKFP 563 (581)
Q Consensus 497 ~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~la-~~~~~~g~~~~A~~ 563 (581)
.-+..||.+....|+.. .|.+++.++...-.-++-.........+. ++| .+|...|+++++.+
T Consensus 667 ---~Kw~~Lg~~al~~~~l~-lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 667 ---VKWRQLGDAALSAGELP-LASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred ---HHHHHHHHHHhhcccch-hHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHH
Confidence 34788999999999999 99999998865433222111111111122 222 35667788888877
Q ss_pred HHHHH
Q 008016 564 LKKRL 568 (581)
Q Consensus 564 ~~~~a 568 (581)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76554
No 475
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=40.22 E-value=5.5e+02 Score=28.41 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=56.8
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 008016 127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL 206 (581)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (581)
++.....|+.|+..|++... .-++..+--++.+.+|.....+-.-..-.+.+.+++...+.+... +...--|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 555 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRE-------SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEY 555 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhh-------cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHH
Confidence 44445555555555555443 334455556677777776654321111113444444444333222 2222235
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
...+.+|...|++++-++.|.-|++.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 667788999999999999999998865
No 476
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.30 E-value=98 Score=21.42 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHccCHHHHHHHHHHHHHHHHH
Q 008016 425 YSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
--..|++++|+.+|..+++.+..
T Consensus 16 eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHHHHH
Confidence 34568999999999999998765
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.43 E-value=14 Score=20.37 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=17.1
Q ss_pred ChhhhHHHHHHHHHHHHHHhhhhcC
Q 008016 557 RKEEKFPLKKRLSNLRMKYKQKVQY 581 (581)
Q Consensus 557 ~~~~A~~~~~~a~~l~~~~~~~~~~ 581 (581)
.++.|..+|++.+...+..+..+.|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4577888888887776666555544
No 478
>PRK11619 lytic murein transglycosylase; Provisional
Probab=36.86 E-value=5.3e+02 Score=27.20 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHH
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQA 143 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~ 143 (581)
+..+..+....+.|++..+..+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~ 58 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPT 58 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5578888999999998887665544
No 479
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=4.9e+02 Score=28.14 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----------c--CChHHHHHH
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----------I--GDLKFVQSL 184 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~--g~~~~A~~~ 184 (581)
.+..-...+..+...|++.+|++.|+.++-...-...........+.-+..++.-|.. + ++.+.+
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~--- 1066 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ--- 1066 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH---
Confidence 3455667788889999999999999988754332221111222233334444433321 1 112222
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
++ +...+....-......-++..--..+++.+++..|-.+..+.+++.
T Consensus 1067 ~E-lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~ 1114 (1202)
T KOG0292|consen 1067 LE-LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELA 1114 (1202)
T ss_pred HH-HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Confidence 11 1222222222223333344555566788899999988888887763
No 480
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.90 E-value=3.2e+02 Score=23.83 Aligned_cols=55 Identities=13% Similarity=-0.102 Sum_probs=39.9
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
-+.+.+...+|+...+.-++ ..|........+-.++.-.|+|++|...++-+-++
T Consensus 10 eLL~~~sL~dai~~a~~qVk--------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK--------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh--------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 35566788888887776655 24554555666778889999999999888876554
No 481
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.34 E-value=1.6e+02 Score=20.29 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 337 HAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.-.-..|++++|..+|..+++.+...
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33456799999999999999987654
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.87 E-value=3.4e+02 Score=28.54 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHH---HHHHHHHHHH---HccCHHHHHHHHHHHHHHHH
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT---HLLNLAASYS---RSKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~---~~g~~~~A~~~~~~al~~~~ 446 (581)
..+-.++-..|....+|+.-+++.+..-.+- +....+. +.+..+-.+. .-|+-++|+...-.+++.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP------~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~-- 272 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP------DTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK-- 272 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCc------chhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh--
Confidence 3444667778888888988877766544331 1111111 1111122222 346777887776666552
Q ss_pred HhcCCCCcchHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHH
Q 008016 447 KTVGPDDQSISFPMLHLGITLYH---------LNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~ 487 (581)
.|+-.|+ .+...|++|.. .+..+.|+++|+++.+..
T Consensus 273 --eg~vapD---m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 273 --EGPVAPD---MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred --cCCCCCc---eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 2233333 34445666553 355677888888887643
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.12 E-value=6.4e+02 Score=26.73 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHH---HHHHHHHHH---hccCHHHHHHHHHHHHHHH
Q 008016 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI---LLHMGSMYS---TLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~---~~g~~~~A~~~~~~al~~~ 233 (581)
-.+++-.++-..|....+|+.-+++.+.+..+-+. -.++.. .+..+.++. .-|+-++|+...-.+++.-
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t-----~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDT-----LKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcch-----hhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc
Confidence 34666677778888899999988888776655211 111111 111222222 3467777777666555531
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHH
Q 008016 234 ESRYGKTSILLVTSLLGMAKVL---------GSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 234 ~~~~~~~~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~al~~ 274 (581)
++-.| ..+..-|.+| ...+..+.|+++|+++.+.
T Consensus 274 ----g~vap---Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 274 ----GPVAP---DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred ----CCCCC---ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 22222 2233334444 3446677888999988876
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.09 E-value=7.1e+02 Score=27.26 Aligned_cols=185 Identities=14% Similarity=0.017 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhh--cc
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA--EEAVELYKKALRVIKDS--NY 364 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~--~~ 364 (581)
-+..|+.+|...|+.++|++.+.+...-.. ..+......+-.+...+...+.. +-..++-.-.+...... .-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 356789999999999999999988766321 01112222233333333333433 33333333322211110 00
Q ss_pred CCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH--------ccCHHHHH
Q 008016 365 MSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAE 435 (581)
Q Consensus 365 ~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~ 435 (581)
+..+.. .....-.....-|......+-++.+++.++...+.. .+ ..+..++..|.+ .++-+++.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~----~~---~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT----ST---LLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc----ch---HHHHHHHHHHHHHHhhccCchhccccch
Confidence 000011 000000111123456677788888888887654321 11 122223333322 22334555
Q ss_pred HH--HHHHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 436 RL--LRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 436 ~~--~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
+. .++.....+ ....-+|. ....+...+.++.+.|+.++|+..|-..+.
T Consensus 655 E~~~rekl~~~l~-~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLE-SSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhh-hhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 54 333333222 21111221 123566778888899999999998876654
No 485
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.03 E-value=4.4e+02 Score=24.78 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 291 FSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 291 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
..-|.++...++|.+....+..+-..++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 3457888888888888877776655444
No 486
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=30.87 E-value=1.7e+02 Score=20.21 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008016 111 MNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANY 145 (581)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 145 (581)
..++...+..++.-+..+...|++..|+..+.=+.
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445666678888888899999988887665443
No 487
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.46 E-value=1.9e+02 Score=20.05 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 339 KCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 339 ~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.-..|++++|..+|..+++.+...
T Consensus 16 ~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 16 KEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344599999999999999987664
No 488
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=30.44 E-value=99 Score=16.86 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 008016 247 SLLGMAKVLGSI----GRAKKAVEIYHRVIT 273 (581)
Q Consensus 247 ~~~~la~~~~~~----g~~~~A~~~~~~al~ 273 (581)
+...+|.+|..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456677776543 388899999888765
No 489
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=4.1e+02 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 150 (581)
...-.+...+...-..++|++|..+|+.+++.+..
T Consensus 8 ~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 8 QKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 34445667777777889999999999999876544
No 490
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=28.82 E-value=7e+02 Score=26.16 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCChhHHHHHH
Q 008016 121 LFNEVKSMIMMGNKNDAIDLL 141 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~ 141 (581)
+...+..+.+.|++++|.++.
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHH
Confidence 445677889999999999988
No 491
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.46 E-value=98 Score=16.16 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.0
Q ss_pred CChhHHHHHHHHHHHH
Q 008016 132 GNKNDAIDLLQANYEA 147 (581)
Q Consensus 132 g~~~~A~~~~~~al~~ 147 (581)
|+.+.+..+|++++..
T Consensus 1 ~~~~~~r~i~e~~l~~ 16 (33)
T smart00386 1 GDIERARKIYERALEK 16 (33)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5678888899998875
No 492
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=27.65 E-value=6e+02 Score=25.03 Aligned_cols=298 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH----------HHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS----------MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS 247 (581)
Q Consensus 178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 247 (581)
|-.|...+++...+.+.+.-.+|......+..++ -+...+..+-......+-+...-+..-..-+....+
T Consensus 225 ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~ev 304 (660)
T COG5107 225 YMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEV 304 (660)
T ss_pred HHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
|+.........++-+.|+...++++.. .|. ....++.+|....+-+.-..+|+++.+...+.+......
T Consensus 305 w~dys~Y~~~isd~q~al~tv~rg~~~--------sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~ 373 (660)
T COG5107 305 WFDYSEYLIGISDKQKALKTVERGIEM--------SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESE 373 (660)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhcccC--------CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 407 (581)
....- .|+++...+++-+-.... ..++..+-..-.+..-.+.|..+|.++-+.
T Consensus 374 ~~s~~---------D~N~e~~~Ell~kr~~k~-------------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~----- 426 (660)
T COG5107 374 SASKV---------DNNFEYSKELLLKRINKL-------------TFVFCVHLNYVLRKRGLEAARKLFIKLRKE----- 426 (660)
T ss_pred hhccc---------cCCccccHHHHHHHHhhh-------------hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----
Q ss_pred CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+-......++......+.. |++..|...|+-.+. ..|+........-..+...++-+.|..+|+++++..
T Consensus 427 -~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--------~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 427 -GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--------KFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred -CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--------hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Q ss_pred HHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 488 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 488 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
+.. .....+..+..--..-|+.. .+..+=++..+..
T Consensus 497 ~~~------q~k~iy~kmi~YEs~~G~lN-~v~sLe~rf~e~~ 532 (660)
T COG5107 497 EKT------QLKRIYDKMIEYESMVGSLN-NVYSLEERFRELV 532 (660)
T ss_pred HHh------hhhHHHHHHHHHHHhhcchH-HHHhHHHHHHHHc
No 493
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=27.22 E-value=9.5e+02 Score=27.18 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH------HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 335 LAHAKCANGNAEEAVELYKKALR------VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
-|..|...|+.++|++.|+.+.. +..+ ...........-..|+.-+..++++-+|-++..+.+
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~q---l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQ---LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 35556667777777776655432 2222 122223333233556677777788777777666544
No 494
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.21 E-value=6e+02 Score=24.53 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH--HHHHHhccCHHHHHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM--GSMYSTLENYEKSMLVYQ 227 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 227 (581)
.+..++..++|..|...++.+.... +.+........+..+ |..++..-++++|.+.++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~--l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL--LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc--cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4557788999999999999987652 122222333344444 444567889999999998
No 495
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.85 E-value=6.4e+02 Score=24.70 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA-EEAVELYKKALR 357 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 357 (581)
..+.+.+-.+...-|+++.|...+.+++.-.+.+ +-.|... +|..+.....+.++. .-|...+.....
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLs-Syh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLS-SYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchh-hHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 4567788888999999999999999999887776 3344443 445555555555554 335555544433
No 496
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.73 E-value=1.8e+02 Score=27.82 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016 501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~ 532 (581)
+....|.++...++++ +|+.+|++++.+..+
T Consensus 24 ~~V~~gl~~dE~~~~e-~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWE-NALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHhhcchhhhcCHH-HHHHHHHHHHHHHHh
Confidence 3567788999999999 999999999987766
No 497
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.72 E-value=7.9e+02 Score=25.77 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=13.4
Q ss_pred HHHHhccCHHHHHHHHHH
Q 008016 211 SMYSTLENYEKSMLVYQR 228 (581)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~ 228 (581)
.++.-.|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 455678999999998876
No 498
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.19 E-value=1.9e+02 Score=19.07 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=33.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH--HHHHHHHHhccCHHHHHHHH
Q 008016 169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVY 226 (581)
Q Consensus 169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~ 226 (581)
+..+...|+|-+|-+.++.+-... +.+.......+ ...|....+.|+...|..++
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~~---~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKAA---PGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCCT----CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHcCCCHHHhHHHHHHHHHHC---CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 455677899999999998865422 12223333333 33455566789888887653
No 499
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.89 E-value=2.3e+02 Score=27.21 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHH
Q 008016 434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-----KEAEKLVLEALYIREI 489 (581)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~a~~~~~~ 489 (581)
|..+.++|++..++....+.|. +|..+|.++...|+. .+=..+|.+|-++..+
T Consensus 330 a~~l~~~Al~yL~kA~d~ddPe---tWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDDPE---TWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKK 387 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS--TT---HHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCChh---HHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 3444444444444433345554 456677777766653 1234455555554443
No 500
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.16 E-value=4.3e+02 Score=22.38 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
...+.+++.++...|+.++|.....++..++
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999887766
Done!