Query 008016
Match_columns 581
No_of_seqs 1179 out of 4514
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 16:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-36 4E-41 294.4 37.6 371 123-577 4-374 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 7.9E-34 2.7E-38 274.5 38.7 354 120-557 35-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 5.3E-32 1.8E-36 272.5 35.9 399 116-578 4-485 (514)
4 2xpi_A Anaphase-promoting comp 100.0 3E-31 1E-35 272.1 41.2 395 119-577 118-585 (597)
5 3fp2_A TPR repeat-containing p 100.0 9.5E-31 3.2E-35 264.8 39.7 394 116-578 23-498 (537)
6 2y4t_A DNAJ homolog subfamily 100.0 1.8E-29 6.3E-34 249.3 41.6 381 116-563 24-446 (450)
7 4g1t_A Interferon-induced prot 100.0 2.9E-31 9.8E-36 263.9 27.9 396 132-580 25-468 (472)
8 2xpi_A Anaphase-promoting comp 100.0 1.8E-29 6.3E-34 258.8 40.8 394 117-574 83-548 (597)
9 3sf4_A G-protein-signaling mod 100.0 3.5E-29 1.2E-33 243.8 39.2 339 159-516 6-364 (406)
10 3sf4_A G-protein-signaling mod 100.0 7E-29 2.4E-33 241.6 40.9 341 202-563 8-368 (406)
11 3ieg_A DNAJ homolog subfamily 100.0 8.1E-28 2.8E-32 229.9 39.0 329 118-512 3-353 (359)
12 2y4t_A DNAJ homolog subfamily 100.0 2.4E-28 8.2E-33 241.3 34.3 349 158-571 22-410 (450)
13 4a1s_A PINS, partner of inscut 100.0 2.3E-27 8E-32 231.2 39.4 315 158-489 44-375 (411)
14 2gw1_A Mitochondrial precursor 100.0 3.5E-28 1.2E-32 244.6 34.6 356 118-529 39-478 (514)
15 4a1s_A PINS, partner of inscut 100.0 3.8E-27 1.3E-31 229.7 39.2 316 242-577 45-378 (411)
16 3ieg_A DNAJ homolog subfamily 100.0 5.5E-27 1.9E-31 224.1 37.2 328 161-556 2-354 (359)
17 3ro2_A PINS homolog, G-protein 100.0 1.4E-26 4.8E-31 219.1 39.5 310 162-488 5-334 (338)
18 3ro2_A PINS homolog, G-protein 100.0 1.4E-26 4.7E-31 219.2 39.2 313 245-576 5-337 (338)
19 4g1t_A Interferon-induced prot 100.0 1.8E-27 6.3E-32 236.4 33.3 361 120-530 53-460 (472)
20 3fp2_A TPR repeat-containing p 100.0 4.8E-26 1.7E-30 230.2 39.6 350 119-530 60-492 (537)
21 3ulq_A Response regulator aspa 100.0 2.2E-25 7.5E-30 214.6 41.7 355 158-535 8-374 (383)
22 3ulq_A Response regulator aspa 100.0 2.3E-25 8E-30 214.4 39.2 351 116-493 10-375 (383)
23 2xm6_A Protein corresponding t 100.0 9.1E-25 3.1E-29 217.3 42.3 350 119-572 40-433 (490)
24 1fch_A Peroxisomal targeting s 100.0 6.1E-27 2.1E-31 224.6 23.8 314 171-535 34-365 (368)
25 1fch_A Peroxisomal targeting s 99.9 1.2E-26 4.1E-31 222.6 22.8 312 212-575 34-363 (368)
26 3hym_B Cell division cycle pro 99.9 3.7E-26 1.3E-30 215.6 25.6 298 119-474 23-322 (330)
27 3q15_A PSP28, response regulat 99.9 4.8E-24 1.6E-28 204.7 38.3 335 172-534 22-370 (378)
28 3nf1_A KLC 1, kinesin light ch 99.9 8.1E-25 2.8E-29 204.5 32.1 285 279-574 19-310 (311)
29 4eqf_A PEX5-related protein; a 99.9 4.2E-26 1.4E-30 218.4 23.3 294 201-535 63-362 (365)
30 3hym_B Cell division cycle pro 99.9 1.1E-25 3.6E-30 212.4 24.2 301 159-516 19-322 (330)
31 4eqf_A PEX5-related protein; a 99.9 2.6E-25 8.8E-30 212.9 27.0 286 120-448 67-360 (365)
32 3q15_A PSP28, response regulat 99.9 3.5E-24 1.2E-28 205.6 34.4 348 116-492 10-371 (378)
33 3nf1_A KLC 1, kinesin light ch 99.9 2.5E-24 8.5E-29 201.2 32.1 284 194-487 18-308 (311)
34 2xm6_A Protein corresponding t 99.9 6.1E-23 2.1E-27 204.2 39.7 352 119-569 76-469 (490)
35 3edt_B KLC 2, kinesin light ch 99.9 1.9E-23 6.6E-28 192.2 29.6 271 297-572 11-282 (283)
36 3edt_B KLC 2, kinesin light ch 99.9 4.8E-23 1.7E-27 189.5 28.9 270 213-486 11-281 (283)
37 3cv0_A Peroxisome targeting si 99.9 1.9E-23 6.5E-28 196.7 25.9 285 244-576 20-320 (327)
38 3cv0_A Peroxisome targeting si 99.9 2.7E-23 9.2E-28 195.6 26.9 279 121-450 24-321 (327)
39 1hz4_A MALT regulatory protein 99.9 3.4E-21 1.2E-25 184.7 38.3 311 202-532 13-325 (373)
40 1hz4_A MALT regulatory protein 99.9 3.3E-21 1.1E-25 184.8 37.7 313 161-489 13-325 (373)
41 3uq3_A Heat shock protein STI1 99.9 1.9E-21 6.4E-26 176.2 29.7 252 117-423 4-255 (258)
42 3uq3_A Heat shock protein STI1 99.9 4.8E-21 1.6E-25 173.5 32.0 253 243-550 3-255 (258)
43 3u4t_A TPR repeat-containing p 99.9 2.7E-22 9.2E-27 183.4 20.9 251 288-578 4-257 (272)
44 2h6f_A Protein farnesyltransfe 99.9 1E-21 3.4E-26 185.7 24.8 255 241-555 93-366 (382)
45 3u4t_A TPR repeat-containing p 99.9 4.1E-22 1.4E-26 182.1 21.4 262 162-469 3-267 (272)
46 2h6f_A Protein farnesyltransfe 99.9 8.8E-22 3E-26 186.0 23.7 255 158-470 93-366 (382)
47 2pl2_A Hypothetical conserved 99.9 1.3E-21 4.4E-26 171.3 19.7 197 245-484 5-212 (217)
48 2pl2_A Hypothetical conserved 99.9 1.7E-21 5.9E-26 170.5 18.9 197 203-442 5-212 (217)
49 3e4b_A ALGK; tetratricopeptide 99.9 6.7E-22 2.3E-26 193.3 15.8 351 122-572 7-388 (452)
50 3mkr_A Coatomer subunit epsilo 99.9 1.5E-19 5.2E-24 165.4 29.8 263 171-499 8-272 (291)
51 3mkr_A Coatomer subunit epsilo 99.9 1.5E-19 5.1E-24 165.4 28.3 257 125-444 6-264 (291)
52 2ooe_A Cleavage stimulation fa 99.9 3.2E-18 1.1E-22 171.9 36.8 384 121-574 16-495 (530)
53 1ouv_A Conserved hypothetical 99.8 1.2E-18 4E-23 159.1 27.5 230 284-576 3-256 (273)
54 1ouv_A Conserved hypothetical 99.8 1.2E-18 4.2E-23 158.9 26.8 224 201-486 4-251 (273)
55 1qqe_A Vesicular transport pro 99.8 8.3E-19 2.8E-23 161.2 23.8 225 206-443 40-268 (292)
56 2ifu_A Gamma-SNAP; membrane fu 99.8 2.2E-18 7.6E-23 159.6 26.3 248 215-478 3-253 (307)
57 1qqe_A Vesicular transport pro 99.8 2.2E-18 7.4E-23 158.4 25.6 222 252-485 44-268 (292)
58 1xnf_A Lipoprotein NLPI; TPR, 99.8 7.6E-19 2.6E-23 160.6 22.5 256 171-480 14-269 (275)
59 2ooe_A Cleavage stimulation fa 99.8 2E-17 6.9E-22 166.1 34.4 350 158-571 9-454 (530)
60 2q7f_A YRRB protein; TPR, prot 99.8 5.6E-19 1.9E-23 158.2 20.1 219 202-470 22-240 (243)
61 2q7f_A YRRB protein; TPR, prot 99.8 5.8E-19 2E-23 158.1 19.4 217 243-509 21-237 (243)
62 2ifu_A Gamma-SNAP; membrane fu 99.8 6.6E-18 2.3E-22 156.4 26.8 247 174-436 3-253 (307)
63 2ho1_A Type 4 fimbrial biogene 99.8 7.1E-18 2.4E-22 151.9 26.3 204 244-487 36-239 (252)
64 4abn_A Tetratricopeptide repea 99.8 9.7E-19 3.3E-23 172.0 21.9 217 185-441 84-318 (474)
65 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.2E-18 4.2E-23 159.2 21.2 258 210-523 12-269 (275)
66 2vq2_A PILW, putative fimbrial 99.8 1.2E-17 4.3E-22 147.4 26.8 212 241-497 4-217 (225)
67 4abn_A Tetratricopeptide repea 99.8 1.7E-18 5.7E-23 170.3 22.8 220 223-483 81-318 (474)
68 3e4b_A ALGK; tetratricopeptide 99.8 1.2E-18 4.1E-23 170.3 21.6 354 121-574 38-424 (452)
69 3vtx_A MAMA; tetratricopeptide 99.8 5.8E-18 2E-22 144.2 22.2 168 286-487 4-171 (184)
70 2ho1_A Type 4 fimbrial biogene 99.8 1.7E-17 5.8E-22 149.4 26.4 203 117-358 36-238 (252)
71 3vtx_A MAMA; tetratricopeptide 99.8 6.8E-18 2.3E-22 143.8 22.3 166 245-444 5-170 (184)
72 4gyw_A UDP-N-acetylglucosamine 99.8 2.5E-18 8.4E-23 175.3 22.8 175 282-490 4-178 (723)
73 2vq2_A PILW, putative fimbrial 99.8 6.9E-17 2.4E-21 142.6 28.3 206 199-444 4-211 (225)
74 4gyw_A UDP-N-acetylglucosamine 99.8 2.9E-18 9.8E-23 174.9 21.6 175 198-406 4-178 (723)
75 3n71_A Histone lysine methyltr 99.8 3.2E-18 1.1E-22 165.8 20.3 152 420-572 314-465 (490)
76 3qky_A Outer membrane assembly 99.8 8.1E-18 2.8E-22 152.2 21.1 212 325-564 11-254 (261)
77 3n71_A Histone lysine methyltr 99.8 6.8E-18 2.3E-22 163.5 20.2 152 378-530 314-465 (490)
78 3qky_A Outer membrane assembly 99.8 2.4E-17 8.3E-22 149.1 22.6 210 158-393 11-252 (261)
79 1xi4_A Clathrin heavy chain; a 99.8 8.9E-16 3.1E-20 159.5 35.5 260 121-483 988-1247(1630)
80 1xi4_A Clathrin heavy chain; a 99.8 6.7E-16 2.3E-20 160.4 32.6 325 124-568 1055-1381(1630)
81 4i17_A Hypothetical protein; T 99.8 3.4E-16 1.2E-20 138.3 24.0 184 246-467 8-224 (228)
82 4i17_A Hypothetical protein; T 99.7 9.2E-16 3.1E-20 135.6 21.8 168 119-316 8-209 (228)
83 3gw4_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 132.1 22.1 178 256-448 3-180 (203)
84 3gw4_A Uncharacterized protein 99.7 2.1E-15 7.2E-20 130.6 22.4 194 214-424 3-196 (203)
85 3u3w_A Transcriptional activat 99.7 3.1E-15 1.1E-19 137.5 23.3 194 243-448 73-270 (293)
86 2qfc_A PLCR protein; TPR, HTH, 99.7 2.2E-15 7.5E-20 138.6 22.1 196 244-448 74-270 (293)
87 2ond_A Cleavage stimulation fa 99.7 4.3E-15 1.5E-19 137.7 24.0 225 304-574 33-273 (308)
88 2ond_A Cleavage stimulation fa 99.7 2.3E-15 8E-20 139.5 21.8 224 135-403 33-271 (308)
89 2qfc_A PLCR protein; TPR, HTH, 99.7 3.9E-15 1.3E-19 136.9 23.1 196 285-490 73-270 (293)
90 4b4t_Q 26S proteasome regulato 99.7 2.1E-13 7.1E-18 133.4 34.5 239 165-412 7-255 (434)
91 4b4t_Q 26S proteasome regulato 99.7 3.4E-14 1.1E-18 139.1 28.7 240 248-496 7-255 (434)
92 3u3w_A Transcriptional activat 99.7 8.3E-15 2.8E-19 134.7 22.8 194 160-362 73-270 (293)
93 3qww_A SET and MYND domain-con 99.7 1.1E-15 3.7E-20 145.7 16.8 122 385-506 310-431 (433)
94 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.3E-14 8E-19 125.9 23.9 177 245-443 4-212 (225)
95 1b89_A Protein (clathrin heavy 99.7 1.6E-16 5.6E-21 147.9 8.9 332 129-569 14-353 (449)
96 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.2E-14 1.1E-18 125.0 23.3 177 329-528 4-212 (225)
97 3as5_A MAMA; tetratricopeptide 99.7 1.2E-14 4.1E-19 123.7 19.8 170 284-487 5-174 (186)
98 3qww_A SET and MYND domain-con 99.7 4.2E-15 1.4E-19 141.6 18.3 122 427-549 310-431 (433)
99 3as5_A MAMA; tetratricopeptide 99.6 1.1E-14 3.8E-19 123.9 19.0 172 158-360 4-175 (186)
100 3qwp_A SET and MYND domain-con 99.6 3.9E-15 1.3E-19 142.3 16.9 132 381-512 295-426 (429)
101 3ro3_A PINS homolog, G-protein 99.6 4.5E-14 1.5E-18 117.2 21.0 158 282-447 4-161 (164)
102 2pzi_A Probable serine/threoni 99.6 2E-15 6.8E-20 155.2 15.1 200 129-362 402-602 (681)
103 1b89_A Protein (clathrin heavy 99.6 1.7E-16 5.7E-21 147.8 6.4 294 172-568 13-308 (449)
104 4ga2_A E3 SUMO-protein ligase 99.6 1.7E-15 5.7E-20 123.4 11.4 147 208-388 2-149 (150)
105 2pzi_A Probable serine/threoni 99.6 2.9E-15 9.9E-20 154.0 15.9 200 256-490 402-602 (681)
106 4ga2_A E3 SUMO-protein ligase 99.6 1.7E-15 5.8E-20 123.4 11.1 147 250-430 2-149 (150)
107 3qwp_A SET and MYND domain-con 99.6 6.1E-15 2.1E-19 141.0 16.2 131 424-555 296-426 (429)
108 3urz_A Uncharacterized protein 99.6 4.2E-14 1.5E-18 122.4 20.2 166 287-487 4-187 (208)
109 3ro3_A PINS homolog, G-protein 99.6 8E-14 2.7E-18 115.7 20.8 158 198-361 4-161 (164)
110 3urz_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 122.5 19.7 165 245-444 4-186 (208)
111 4gco_A Protein STI-1; structur 99.5 3.2E-13 1.1E-17 105.9 15.9 103 240-358 8-110 (126)
112 4gco_A Protein STI-1; structur 99.5 2.1E-13 7.3E-18 106.9 14.2 118 197-338 7-124 (126)
113 3dra_A Protein farnesyltransfe 99.5 2.8E-12 9.6E-17 116.0 23.1 237 117-401 31-286 (306)
114 3rjv_A Putative SEL1 repeat pr 99.5 5.2E-13 1.8E-17 115.9 16.4 177 135-358 3-197 (212)
115 3qou_A Protein YBBN; thioredox 99.5 6.6E-13 2.3E-17 121.2 17.7 169 284-486 114-284 (287)
116 3rjv_A Putative SEL1 repeat pr 99.5 1.2E-12 4E-17 113.6 18.1 177 262-486 3-197 (212)
117 3qou_A Protein YBBN; thioredox 99.5 7.9E-13 2.7E-17 120.7 17.6 166 118-316 117-284 (287)
118 3dra_A Protein farnesyltransfe 99.5 1.9E-11 6.4E-16 110.6 25.5 226 255-528 43-286 (306)
119 2r5s_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 113.6 12.4 163 120-316 8-173 (176)
120 2r5s_A Uncharacterized protein 99.5 2.7E-13 9.3E-18 114.0 12.0 164 288-486 7-173 (176)
121 4f3v_A ESX-1 secretion system 99.5 2.1E-12 7.2E-17 113.7 17.9 212 114-358 3-237 (282)
122 4gcn_A Protein STI-1; structur 99.5 3.9E-12 1.3E-16 99.9 17.5 108 284-402 5-112 (127)
123 4gcn_A Protein STI-1; structur 99.5 3.5E-12 1.2E-16 100.2 16.5 108 242-358 5-112 (127)
124 4f3v_A ESX-1 secretion system 99.5 3.6E-12 1.2E-16 112.2 18.0 209 246-487 8-238 (282)
125 3gyz_A Chaperone protein IPGC; 99.5 3.3E-12 1.1E-16 103.0 16.3 103 240-358 31-133 (151)
126 2vsy_A XCC0866; transferase, g 99.4 1.1E-12 3.6E-17 132.9 16.2 153 258-444 2-157 (568)
127 4e6h_A MRNA 3'-END-processing 99.4 6.5E-10 2.2E-14 112.2 36.0 398 120-575 68-574 (679)
128 2vsy_A XCC0866; transferase, g 99.4 1.6E-12 5.5E-17 131.5 15.8 153 131-316 2-157 (568)
129 3gyz_A Chaperone protein IPGC; 99.4 6.6E-12 2.2E-16 101.3 14.6 104 197-316 30-133 (151)
130 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.7E-14 110.6 33.4 380 133-573 47-535 (679)
131 1p5q_A FKBP52, FK506-binding p 99.4 1.4E-12 4.7E-17 121.9 11.4 164 174-360 125-296 (336)
132 1p5q_A FKBP52, FK506-binding p 99.4 1.2E-12 4.2E-17 122.2 11.0 162 130-317 125-295 (336)
133 2vgx_A Chaperone SYCD; alterna 99.4 1E-11 3.4E-16 100.5 14.6 104 240-359 16-119 (148)
134 3dss_A Geranylgeranyl transfer 99.4 3.9E-10 1.3E-14 102.5 26.3 232 120-402 31-304 (331)
135 2fo7_A Synthetic consensus TPR 99.4 3.7E-11 1.3E-15 95.8 17.5 131 246-402 2-132 (136)
136 2vgx_A Chaperone SYCD; alterna 99.4 1.3E-11 4.4E-16 99.9 14.5 109 370-499 18-126 (148)
137 2fo7_A Synthetic consensus TPR 99.4 3.3E-11 1.1E-15 96.0 16.9 130 205-358 3-132 (136)
138 1a17_A Serine/threonine protei 99.4 7.4E-11 2.5E-15 97.9 19.0 140 243-406 11-150 (166)
139 3upv_A Heat shock protein STI1 99.3 7.8E-11 2.7E-15 92.6 16.5 122 201-340 2-123 (126)
140 3upv_A Heat shock protein STI1 99.3 8.8E-11 3E-15 92.3 16.5 102 244-361 3-104 (126)
141 1a17_A Serine/threonine protei 99.3 9.6E-11 3.3E-15 97.2 17.6 139 201-361 11-149 (166)
142 2hr2_A Hypothetical protein; a 99.3 1.3E-10 4.5E-15 92.1 15.9 117 244-361 10-134 (159)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.2E-11 7.5E-16 106.0 12.7 136 204-358 7-150 (213)
144 2c2l_A CHIP, carboxy terminus 99.3 7.9E-12 2.7E-16 113.6 9.8 194 245-485 4-198 (281)
145 1hh8_A P67PHOX, NCF-2, neutrop 99.3 6.2E-11 2.1E-15 103.1 15.0 139 245-402 6-150 (213)
146 2fbn_A 70 kDa peptidylprolyl i 99.3 1.3E-11 4.4E-16 106.0 9.7 166 290-483 7-183 (198)
147 2fbn_A 70 kDa peptidylprolyl i 99.3 1.3E-11 4.3E-16 106.0 9.0 160 167-349 9-176 (198)
148 2lni_A Stress-induced-phosphop 99.3 1.1E-10 3.8E-15 92.6 14.0 124 197-344 10-133 (133)
149 2hr2_A Hypothetical protein; a 99.3 1.8E-10 6.3E-15 91.3 14.4 120 117-236 10-135 (159)
150 2vyi_A SGTA protein; chaperone 99.2 3.2E-10 1.1E-14 89.6 16.1 124 240-389 7-130 (131)
151 2lni_A Stress-induced-phosphop 99.2 1.5E-10 5E-15 92.0 14.0 123 240-388 11-133 (133)
152 2xcb_A PCRH, regulatory protei 99.2 4.3E-10 1.5E-14 90.4 16.7 105 240-360 13-117 (142)
153 2xcb_A PCRH, regulatory protei 99.2 4.6E-10 1.6E-14 90.2 16.6 103 369-487 14-116 (142)
154 3rkv_A Putative peptidylprolyl 99.2 2E-10 6.7E-15 94.9 14.7 109 200-316 8-126 (162)
155 3dss_A Geranylgeranyl transfer 99.2 8.8E-09 3E-13 93.6 26.5 236 173-465 40-317 (331)
156 2vyi_A SGTA protein; chaperone 99.2 2.3E-10 8E-15 90.4 14.1 124 198-345 7-130 (131)
157 3sz7_A HSC70 cochaperone (SGT) 99.2 3.2E-10 1.1E-14 93.8 15.0 103 241-359 7-109 (164)
158 3q7a_A Farnesyltransferase alp 99.2 4.3E-09 1.5E-13 96.0 23.4 243 243-528 52-330 (349)
159 3q7a_A Farnesyltransferase alp 99.2 4.4E-09 1.5E-13 96.0 23.5 258 159-464 51-344 (349)
160 1wao_1 Serine/threonine protei 99.2 6.1E-12 2.1E-16 123.2 5.0 181 242-448 3-201 (477)
161 2c2l_A CHIP, carboxy terminus 99.2 1.4E-11 4.9E-16 111.8 6.9 194 329-570 4-198 (281)
162 3sz7_A HSC70 cochaperone (SGT) 99.2 2.5E-10 8.6E-15 94.4 13.7 104 198-317 6-109 (164)
163 2e2e_A Formate-dependent nitri 99.2 1.6E-10 5.5E-15 97.1 12.6 122 213-358 20-144 (177)
164 1wao_1 Serine/threonine protei 99.2 1.1E-11 3.8E-16 121.4 6.0 180 284-489 3-200 (477)
165 3rkv_A Putative peptidylprolyl 99.2 5.5E-10 1.9E-14 92.2 15.5 128 326-469 8-144 (162)
166 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.8E-11 9.7E-16 118.1 8.6 154 130-309 246-407 (457)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 3.7E-11 1.3E-15 117.2 9.1 160 175-357 247-414 (457)
168 2e2e_A Formate-dependent nitri 99.2 2.4E-10 8.1E-15 96.0 13.0 122 128-274 20-144 (177)
169 2xev_A YBGF; tetratricopeptide 99.2 2.3E-09 7.9E-14 84.4 17.1 102 247-358 4-105 (129)
170 1na0_A Designed protein CTPR3; 99.2 1.7E-09 6E-14 84.4 15.9 118 244-387 8-125 (125)
171 2xev_A YBGF; tetratricopeptide 99.2 2.5E-09 8.6E-14 84.2 16.7 116 376-506 5-120 (129)
172 3mv2_B Coatomer subunit epsilo 99.1 4.1E-09 1.4E-13 94.1 19.7 262 124-457 19-290 (310)
173 3mv2_B Coatomer subunit epsilo 99.1 9.6E-09 3.3E-13 91.8 21.9 259 171-498 22-289 (310)
174 3q49_B STIP1 homology and U bo 99.1 1.9E-09 6.6E-14 85.9 15.4 102 244-361 8-109 (137)
175 1na0_A Designed protein CTPR3; 99.1 2.5E-09 8.7E-14 83.5 15.5 117 373-513 9-125 (125)
176 1hxi_A PEX5, peroxisome target 99.1 5.2E-10 1.8E-14 86.7 10.9 96 247-358 19-114 (121)
177 1hxi_A PEX5, peroxisome target 99.1 7E-10 2.4E-14 86.0 11.0 97 375-487 19-115 (121)
178 3q49_B STIP1 homology and U bo 99.1 1.9E-09 6.5E-14 86.0 13.5 104 412-532 6-109 (137)
179 1ihg_A Cyclophilin 40; ppiase 99.1 1.9E-09 6.5E-14 101.6 15.5 133 202-350 222-362 (370)
180 1elr_A TPR2A-domain of HOP; HO 99.1 3.6E-09 1.2E-13 83.5 14.5 107 160-274 2-108 (131)
181 1elr_A TPR2A-domain of HOP; HO 99.1 1.5E-08 5.1E-13 79.8 17.8 106 286-402 3-108 (131)
182 2dba_A Smooth muscle cell asso 99.1 3E-09 1E-13 86.1 13.6 104 200-316 25-128 (148)
183 1elw_A TPR1-domain of HOP; HOP 99.1 7E-09 2.4E-13 80.0 15.1 98 245-358 4-101 (118)
184 2dba_A Smooth muscle cell asso 99.0 3.6E-09 1.2E-13 85.6 13.9 120 325-467 24-143 (148)
185 1ihg_A Cyclophilin 40; ppiase 99.0 2.7E-09 9.3E-14 100.6 14.7 133 244-394 222-362 (370)
186 1elw_A TPR1-domain of HOP; HOP 99.0 4.9E-09 1.7E-13 80.9 13.4 112 203-338 4-115 (118)
187 2if4_A ATFKBP42; FKBP-like, al 99.0 1.6E-09 5.5E-14 101.1 10.5 144 200-359 176-329 (338)
188 3k9i_A BH0479 protein; putativ 99.0 2.3E-09 8E-14 82.6 9.6 90 385-487 2-91 (117)
189 3k9i_A BH0479 protein; putativ 99.0 1.9E-09 6.4E-14 83.2 9.0 90 215-317 2-91 (117)
190 1dce_A Protein (RAB geranylger 99.0 6.5E-09 2.2E-13 103.5 14.9 187 120-347 30-244 (567)
191 2if4_A ATFKBP42; FKBP-like, al 99.0 1E-09 3.5E-14 102.4 8.4 141 412-577 176-334 (338)
192 1dce_A Protein (RAB geranylger 98.9 3.5E-08 1.2E-12 98.3 17.7 175 259-475 43-244 (567)
193 2kck_A TPR repeat; tetratricop 98.9 2.1E-09 7.4E-14 82.1 6.6 98 245-358 6-106 (112)
194 2kck_A TPR repeat; tetratricop 98.9 6E-09 2E-13 79.5 8.4 102 285-402 4-106 (112)
195 2uy1_A Cleavage stimulation fa 98.9 4.4E-06 1.5E-10 81.9 30.5 367 119-572 15-414 (493)
196 1zu2_A Mitochondrial import re 98.8 1.3E-08 4.5E-13 80.4 8.1 86 257-358 14-120 (158)
197 1zu2_A Mitochondrial import re 98.8 2.1E-08 7E-13 79.3 8.3 87 385-487 14-121 (158)
198 1na3_A Designed protein CTPR2; 98.7 1.2E-07 4E-12 69.0 11.0 86 242-343 6-91 (91)
199 2l6j_A TPR repeat-containing p 98.7 1.1E-08 3.8E-13 77.9 4.4 96 245-353 4-102 (111)
200 1na3_A Designed protein CTPR2; 98.7 2.4E-07 8.1E-12 67.4 11.5 87 411-513 5-91 (91)
201 2l6j_A TPR repeat-containing p 98.6 3.6E-08 1.2E-12 75.0 5.3 95 415-523 4-101 (111)
202 4g26_A Pentatricopeptide repea 98.6 4E-06 1.4E-10 82.1 20.7 168 289-486 28-204 (501)
203 4g26_A Pentatricopeptide repea 98.6 1.8E-06 6.1E-11 84.6 18.1 168 376-572 29-205 (501)
204 2kat_A Uncharacterized protein 98.6 2.3E-07 7.9E-12 71.0 9.4 84 220-319 2-85 (115)
205 1klx_A Cysteine rich protein B 98.6 5.3E-07 1.8E-11 71.4 11.7 111 216-358 8-126 (138)
206 2kat_A Uncharacterized protein 98.6 5E-07 1.7E-11 69.1 11.0 83 263-361 3-85 (115)
207 3ma5_A Tetratricopeptide repea 98.6 2.7E-07 9.3E-12 68.4 9.0 70 242-319 4-73 (100)
208 3ma5_A Tetratricopeptide repea 98.6 8.4E-07 2.9E-11 65.7 11.2 71 283-361 3-73 (100)
209 1klx_A Cysteine rich protein B 98.5 5.5E-07 1.9E-11 71.3 10.5 112 429-573 9-128 (138)
210 2uy1_A Cleavage stimulation fa 98.5 6.7E-05 2.3E-09 73.5 24.8 343 130-568 6-380 (493)
211 3txn_A 26S proteasome regulato 98.3 0.00041 1.4E-08 64.4 24.2 212 204-430 20-235 (394)
212 2kc7_A BFR218_protein; tetratr 98.3 2.3E-06 7.9E-11 63.2 7.7 88 249-360 4-92 (99)
213 3txn_A 26S proteasome regulato 98.2 0.00066 2.2E-08 63.1 24.7 212 245-472 19-235 (394)
214 3u64_A Protein TP_0956; tetrat 98.2 0.00019 6.6E-09 62.5 18.6 83 260-358 178-269 (301)
215 2v5f_A Prolyl 4-hydroxylase su 98.2 2.1E-05 7E-10 58.4 11.0 81 205-294 7-87 (104)
216 2kc7_A BFR218_protein; tetratr 98.2 4.2E-06 1.4E-10 61.8 7.1 87 122-233 4-91 (99)
217 2v5f_A Prolyl 4-hydroxylase su 98.1 0.00012 4.2E-09 54.2 13.6 71 162-232 5-75 (104)
218 3ly7_A Transcriptional activat 98.0 0.00013 4.6E-09 66.4 15.1 134 121-274 199-339 (372)
219 3ly7_A Transcriptional activat 98.0 0.00045 1.5E-08 63.0 17.9 133 207-358 200-339 (372)
220 3bee_A Putative YFRE protein; 97.9 7.9E-05 2.7E-09 53.6 9.2 66 413-486 4-72 (93)
221 3ffl_A Anaphase-promoting comp 97.9 0.00048 1.6E-08 54.1 14.0 128 330-467 21-165 (167)
222 3bee_A Putative YFRE protein; 97.9 0.00012 4E-09 52.7 10.0 67 284-358 3-72 (93)
223 3u64_A Protein TP_0956; tetrat 97.9 0.0038 1.3E-07 54.5 20.6 84 219-316 179-269 (301)
224 3ffl_A Anaphase-promoting comp 97.9 0.00052 1.8E-08 53.9 13.8 125 376-509 23-165 (167)
225 1pc2_A Mitochondria fission pr 97.8 0.00011 3.8E-09 57.4 8.5 76 497-579 30-108 (152)
226 1pc2_A Mitochondria fission pr 97.7 0.0016 5.5E-08 50.8 14.0 67 285-358 30-100 (152)
227 4b4t_P 26S proteasome regulato 97.7 0.018 6.1E-07 55.2 24.4 236 112-361 11-250 (445)
228 4b4t_P 26S proteasome regulato 97.5 0.049 1.7E-06 52.2 24.9 217 175-405 29-250 (445)
229 1nzn_A CGI-135 protein, fissio 97.2 0.0024 8.3E-08 47.8 8.9 77 498-579 34-111 (126)
230 4h7y_A Dual specificity protei 96.6 0.0072 2.5E-07 46.3 7.5 114 456-579 12-131 (161)
231 1nzn_A CGI-135 protein, fissio 96.6 0.11 3.8E-06 38.9 13.6 67 285-358 33-103 (126)
232 3spa_A Mtrpol, DNA-directed RN 96.5 0.011 3.8E-07 61.1 10.5 107 454-572 124-231 (1134)
233 4h7y_A Dual specificity protei 96.5 0.028 9.4E-07 43.2 10.0 103 205-316 15-123 (161)
234 3spa_A Mtrpol, DNA-directed RN 96.5 0.038 1.3E-06 57.3 13.8 105 243-358 125-230 (1134)
235 3mkq_A Coatomer beta'-subunit; 96.2 0.071 2.4E-06 56.2 14.9 75 333-441 633-707 (814)
236 1y8m_A FIS1; mitochondria, unk 96.1 0.013 4.3E-07 44.7 6.2 76 497-579 37-114 (144)
237 4b4t_R RPN7, 26S proteasome re 96.1 0.036 1.2E-06 52.9 10.9 110 200-316 128-237 (429)
238 3o48_A Mitochondria fission 1 96.1 0.007 2.4E-07 45.4 4.6 74 499-579 40-115 (134)
239 4b4t_R RPN7, 26S proteasome re 95.8 0.072 2.5E-06 50.8 11.7 109 285-402 129-237 (429)
240 3mkq_A Coatomer beta'-subunit; 95.6 0.21 7.3E-06 52.5 15.7 75 207-313 633-707 (814)
241 3lpz_A GET4 (YOR164C homolog); 95.6 1.3 4.3E-05 39.9 27.9 234 289-557 37-297 (336)
242 1y8m_A FIS1; mitochondria, unk 94.9 0.9 3.1E-05 34.7 12.9 68 159-232 36-106 (144)
243 2ff4_A Probable regulatory pro 94.7 0.64 2.2E-05 43.6 14.1 105 383-495 125-243 (388)
244 3o48_A Mitochondria fission 1 94.6 0.69 2.4E-05 34.8 11.0 69 158-232 36-107 (134)
245 2ff4_A Probable regulatory pro 94.4 0.72 2.5E-05 43.2 13.6 105 214-326 126-244 (388)
246 4fhn_B Nucleoporin NUP120; pro 94.0 4.2 0.00014 44.4 20.5 209 331-555 844-1079(1139)
247 3mkq_B Coatomer subunit alpha; 94.0 1.1 3.6E-05 36.0 11.7 101 297-441 15-115 (177)
248 4gns_B Protein CSD3, chitin bi 93.8 1.8 6E-05 44.1 15.8 123 342-483 261-397 (754)
249 2wpv_A GET4, UPF0363 protein Y 93.6 3.7 0.00013 36.6 25.1 150 332-487 56-218 (312)
250 3mkq_B Coatomer subunit alpha; 93.6 0.95 3.3E-05 36.3 10.7 101 172-313 15-115 (177)
251 4b4t_S RPN3, 26S proteasome re 93.0 1.9 6.6E-05 41.3 13.6 140 213-358 146-299 (523)
252 3lpz_A GET4 (YOR164C homolog); 92.5 5.7 0.00019 35.7 29.0 45 223-268 115-159 (336)
253 1ya0_A SMG-7 transcript varian 92.4 0.92 3.1E-05 43.8 11.0 80 245-340 152-231 (497)
254 4b4t_S RPN3, 26S proteasome re 92.2 2.5 8.7E-05 40.5 13.4 143 127-274 145-299 (523)
255 2wpv_A GET4, UPF0363 protein Y 90.7 8.8 0.0003 34.2 28.7 142 121-269 16-158 (312)
256 4fhn_B Nucleoporin NUP120; pro 90.1 20 0.00068 39.1 19.8 105 288-398 843-963 (1139)
257 1zbp_A Hypothetical protein VP 89.2 8 0.00027 33.4 12.4 123 425-573 7-131 (273)
258 2w2u_A Hypothetical P60 katani 88.1 4.2 0.00014 27.7 8.2 40 114-153 15-54 (83)
259 1ya0_A SMG-7 transcript varian 87.3 22 0.00074 34.3 17.3 80 416-511 153-232 (497)
260 1o9d_A 14-3-3-like protein C; 87.0 14 0.00047 31.7 18.7 183 120-316 10-207 (260)
261 3kae_A CDC27, possible protein 86.2 11 0.00037 29.7 17.9 178 378-574 38-240 (242)
262 4gns_B Protein CSD3, chitin bi 86.2 32 0.0011 35.1 33.6 123 175-313 261-397 (754)
263 4b4t_O 26S proteasome regulato 86.1 22 0.00074 33.2 16.6 133 136-275 57-199 (393)
264 2cpt_A SKD1 protein, vacuolar 85.9 8.5 0.00029 28.4 9.4 59 114-172 14-72 (117)
265 4a5x_A MITD1, MIT domain-conta 85.5 7 0.00024 26.9 8.5 38 116-153 14-51 (86)
266 1zbp_A Hypothetical protein VP 85.4 15 0.00052 31.7 11.9 125 126-276 5-131 (273)
267 4ady_A RPN2, 26S proteasome re 84.3 44 0.0015 35.1 25.0 200 243-477 411-614 (963)
268 1wfd_A Hypothetical protein 15 83.7 9.2 0.00031 26.8 8.6 54 113-167 10-63 (93)
269 1qsa_A Protein (soluble lytic 83.4 39 0.0013 33.7 26.4 127 336-485 221-347 (618)
270 2npm_A 14-3-3 domain containin 82.2 23 0.0008 30.4 18.2 184 119-317 29-228 (260)
271 2v6y_A AAA family ATPase, P60 81.3 10 0.00036 25.8 9.1 38 116-153 9-46 (83)
272 4b4t_O 26S proteasome regulato 81.1 35 0.0012 31.7 16.6 108 294-403 83-199 (393)
273 2o8p_A 14-3-3 domain containin 80.3 25 0.00084 29.4 20.3 181 123-317 11-198 (227)
274 2vkj_A TM1634; membrane protei 80.0 12 0.00039 25.4 7.6 32 116-147 51-82 (106)
275 3re2_A Predicted protein; meni 78.4 23 0.00079 31.7 10.6 73 287-362 255-329 (472)
276 2br9_A 14-3-3E, 14-3-3 protein 78.0 30 0.001 29.2 21.2 183 120-318 7-204 (234)
277 2v6x_A Vacuolar protein sortin 72.3 20 0.0007 24.4 9.2 39 114-152 9-47 (85)
278 4gq4_A Menin; tumor suppressor 72.3 34 0.0012 31.4 10.3 57 305-364 282-338 (489)
279 4ady_A RPN2, 26S proteasome re 71.8 1E+02 0.0035 32.4 36.9 109 116-230 142-257 (963)
280 3efz_A 14-3-3 protein; 14-3-3, 69.9 53 0.0018 28.2 11.9 56 389-444 168-226 (268)
281 2crb_A Nuclear receptor bindin 66.6 20 0.00068 24.7 5.8 37 414-450 14-50 (97)
282 2rpa_A Katanin P60 ATPase-cont 65.4 28 0.00095 23.3 7.7 36 118-153 12-47 (78)
283 4a5x_A MITD1, MIT domain-conta 64.8 31 0.0011 23.6 7.5 31 332-362 19-49 (86)
284 2w2u_A Hypothetical P60 katani 64.5 30 0.001 23.5 7.4 29 334-362 24-52 (83)
285 2o8p_A 14-3-3 domain containin 63.4 65 0.0022 26.9 21.4 181 292-487 11-198 (227)
286 3ubw_A 14-3-3E, 14-3-3 protein 62.3 75 0.0026 27.2 21.2 58 389-446 172-230 (261)
287 2v6y_A AAA family ATPase, P60 62.1 34 0.0012 23.2 7.3 28 335-362 17-44 (83)
288 3re2_A Predicted protein; meni 60.3 98 0.0034 27.9 14.2 71 374-447 256-328 (472)
289 2br9_A 14-3-3E, 14-3-3 protein 59.8 79 0.0027 26.7 21.7 59 389-447 146-205 (234)
290 4gq2_M Nucleoporin NUP120; bet 58.5 86 0.003 33.3 12.3 71 288-358 841-926 (950)
291 1wfd_A Hypothetical protein 15 58.4 44 0.0015 23.3 7.5 30 333-362 19-48 (93)
292 3u84_A Menin; MLL, JUND, ledgf 57.5 1.2E+02 0.0041 28.0 14.0 52 222-276 298-349 (550)
293 4gq4_A Menin; tumor suppressor 57.4 1.2E+02 0.0041 28.0 13.6 70 375-447 264-335 (489)
294 2wvi_A Mitotic checkpoint seri 57.3 56 0.0019 25.7 8.0 82 265-358 43-125 (164)
295 3uzd_A 14-3-3 protein gamma; s 57.1 91 0.0031 26.5 23.2 59 389-447 147-206 (248)
296 2wvi_A Mitotic checkpoint seri 57.0 50 0.0017 26.0 7.6 82 349-443 43-124 (164)
297 3efz_A 14-3-3 protein; 14-3-3, 56.1 52 0.0018 28.3 8.1 56 473-529 168-226 (268)
298 3t5v_B Nuclear mRNA export pro 55.6 31 0.0011 32.7 7.4 100 345-444 142-249 (455)
299 2rpa_A Katanin P60 ATPase-cont 55.0 20 0.0007 23.9 4.3 34 545-578 15-48 (78)
300 3u84_A Menin; MLL, JUND, ledgf 53.1 1.4E+02 0.0048 27.5 14.1 54 391-447 297-350 (550)
301 2cpt_A SKD1 protein, vacuolar 51.7 68 0.0023 23.5 7.6 25 338-362 27-51 (117)
302 3t5v_B Nuclear mRNA export pro 51.2 92 0.0031 29.5 9.9 70 165-234 179-252 (455)
303 3ubw_A 14-3-3E, 14-3-3 protein 50.6 1.2E+02 0.0041 26.0 23.1 182 120-317 33-229 (261)
304 3iqu_A 14-3-3 protein sigma; s 50.4 1.1E+02 0.0039 25.7 22.9 183 248-446 11-207 (236)
305 3uzd_A 14-3-3 protein gamma; s 50.3 1.2E+02 0.004 25.8 23.5 182 120-317 6-204 (248)
306 2v6x_A Vacuolar protein sortin 48.2 62 0.0021 22.0 6.9 28 335-362 19-46 (85)
307 4aez_C MAD3, mitotic spindle c 47.9 1.2E+02 0.0041 25.3 9.8 84 348-444 96-179 (223)
308 2npm_A 14-3-3 domain containin 47.6 1.4E+02 0.0046 25.7 20.7 57 389-446 172-229 (260)
309 3mkr_B Coatomer subunit alpha; 46.9 1.6E+02 0.0053 26.2 10.6 31 118-148 102-132 (320)
310 2oo2_A Hypothetical protein AF 46.6 54 0.0019 22.4 5.4 52 94-145 11-62 (86)
311 3esl_A Checkpoint serine/threo 46.0 1.2E+02 0.0042 24.8 16.4 86 394-486 58-144 (202)
312 4aez_C MAD3, mitotic spindle c 43.8 1.4E+02 0.0048 24.9 11.3 82 393-486 97-179 (223)
313 4gq2_M Nucleoporin NUP120; bet 42.9 1.2E+02 0.0041 32.3 10.4 72 121-192 843-927 (950)
314 3kae_A CDC27, possible protein 40.2 1.4E+02 0.0047 23.7 22.9 125 125-274 9-143 (242)
315 3ax2_A Mitochondrial import re 39.0 63 0.0022 21.3 4.7 27 461-487 21-47 (73)
316 2wb7_A PT26-6P; extra chromoso 38.8 1.8E+02 0.0063 27.5 9.3 41 474-514 449-489 (526)
317 3ax2_A Mitochondrial import re 38.2 13 0.00044 24.5 1.3 29 546-574 21-49 (73)
318 2ijq_A Hypothetical protein; s 38.1 1E+02 0.0035 24.1 6.7 66 167-235 37-107 (161)
319 1om2_A Protein (mitochondrial 37.8 28 0.00095 24.3 3.0 31 546-576 24-54 (95)
320 3mv2_A Coatomer subunit alpha; 37.0 2.3E+02 0.0078 25.3 14.2 33 117-149 113-145 (325)
321 2crb_A Nuclear receptor bindin 36.1 1.1E+02 0.0036 21.2 9.5 36 117-152 14-49 (97)
322 1o9d_A 14-3-3-like protein C; 34.8 2.2E+02 0.0075 24.4 22.9 57 431-487 151-208 (260)
323 2ijq_A Hypothetical protein; s 34.7 1E+02 0.0034 24.2 6.1 69 207-278 36-108 (161)
324 2a9u_A Ubiquitin carboxyl-term 34.5 1.1E+02 0.0037 23.5 6.2 40 459-500 44-83 (144)
325 2cwy_A Hypothetical protein TT 34.0 1E+02 0.0035 21.5 5.5 64 168-236 7-72 (94)
326 3t5x_A PCI domain-containing p 32.3 99 0.0034 25.4 6.2 60 200-262 11-70 (203)
327 1om2_A Protein (mitochondrial 32.0 85 0.0029 21.9 4.7 27 461-487 24-50 (95)
328 3myv_A SUSD superfamily protei 29.2 1E+02 0.0036 29.2 6.7 35 283-317 186-220 (454)
329 2xze_A STAM-binding protein; h 28.8 71 0.0024 24.6 4.4 40 458-498 41-80 (146)
330 3kez_A Putative sugar binding 27.0 1.1E+02 0.0038 29.1 6.5 34 283-316 192-225 (461)
331 3myv_A SUSD superfamily protei 26.7 1E+02 0.0035 29.3 6.1 35 325-359 186-220 (454)
332 2wm9_A Dedicator of cytokinesi 24.7 4.4E+02 0.015 24.7 10.9 29 415-443 11-39 (428)
333 2cwy_A Hypothetical protein TT 24.6 1.8E+02 0.0061 20.2 6.3 64 209-278 7-72 (94)
334 2dl1_A Spartin; SPG20, MIT, st 23.9 2.1E+02 0.0073 20.8 7.5 38 115-152 19-56 (116)
335 1qsa_A Protein (soluble lytic 23.6 5.5E+02 0.019 25.5 30.7 128 421-570 220-347 (618)
336 3t5x_A PCI domain-containing p 23.0 3.1E+02 0.011 22.4 8.1 59 243-304 12-70 (203)
337 3kez_A Putative sugar binding 22.8 1.3E+02 0.0044 28.7 6.0 34 453-486 192-225 (461)
338 3eab_A Spastin; spastin, MIT, 21.2 1.8E+02 0.0061 20.0 4.6 37 115-151 13-52 (89)
339 2vkj_A TM1634; membrane protei 21.2 2E+02 0.007 19.6 7.2 30 245-274 53-82 (106)
340 2pmr_A Uncharacterized protein 21.0 1.8E+02 0.0063 19.9 4.7 33 112-144 33-65 (87)
341 3iqu_A 14-3-3 protein sigma; s 21.0 3.8E+02 0.013 22.6 23.2 60 473-533 149-209 (236)
342 3mcx_A SUSD superfamily protei 20.4 1.3E+02 0.0044 28.8 5.5 34 283-316 198-231 (477)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-36 Score=294.42 Aligned_cols=371 Identities=16% Similarity=0.188 Sum_probs=325.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL 202 (581)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 202 (581)
..+..+++.|++++|+..++++++. .|....++..++.++...|++++|...++.++... |..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~ 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ----------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLL 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCc
Confidence 4678889999999999999999887 77778889999999999999999999999987753 555
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
..++..+|.++...|++++|+..|++++.+. |....++..+|.++...|++++|+..++++++.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 130 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 6789999999999999999999999999852 334678899999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|....++..+|.++...|++++|+..|+++++. .|....++.++|.++...|++++|+..|+++++.
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 5666788899999999999999999999999976 4566788999999999999999999999999986
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
.|+. ...+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++
T Consensus 199 ---~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 199 ---DPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp ---CTTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2333 456789999999999999999999999886 24445688899999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL 522 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~ 522 (581)
++ .|....++..+|.++...|++++|+..++++++.. | ....++..++.++...|+++ +|+..
T Consensus 265 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~~~~~l~~~~~~~g~~~-~A~~~ 327 (388)
T 1w3b_A 265 EL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----P---THADSLNNLANIKREQGNIE-EAVRL 327 (388)
T ss_dssp HT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHTTTCHH-HHHHH
T ss_pred hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----c---ccHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 84 46667789999999999999999999999998863 3 34477899999999999999 99999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 523 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 523 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
+++++++ .|+...++..+|.+|...|++++|+..|++++++.++...
T Consensus 328 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 328 YRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 9998863 3566778999999999999999999999999988765543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.9e-34 Score=274.53 Aligned_cols=354 Identities=16% Similarity=0.133 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.+...+..+...|++++|+..++++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 97 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK------- 97 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------
Confidence 4667788889999999999999999887 78888999999999999999999999999988764
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
|....++..+|.++...|++++|+..|++++... |....++..+|.++...|++++|+..|+++++.
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 164 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----- 164 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 4555678999999999999999999999998852 334667889999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.|....++..+|.++...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++..
T Consensus 165 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 232 (388)
T 1w3b_A 165 ---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL- 232 (388)
T ss_dssp ---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 5667889999999999999999999999999986 4556788999999999999999999999999987
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
.|++ ..++.++|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++
T Consensus 233 ------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 233 ------SPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp ------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ------CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333 346689999999999999999999999875 23445678999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 519 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A 519 (581)
++++. .|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|+++ +|
T Consensus 296 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~-~A 358 (388)
T 1w3b_A 296 TALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQ-EA 358 (388)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCH-HH
T ss_pred HHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHH-HH
Confidence 99985 4556678899999999999999999999999763 3555678999999999999999 99
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016 520 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557 (581)
Q Consensus 520 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 557 (581)
+..|++++++ .|+...++..+|.++...|+
T Consensus 359 ~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 359 LMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 9999999873 45667889999999988774
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-32 Score=272.47 Aligned_cols=399 Identities=14% Similarity=0.096 Sum_probs=326.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+...|..++..|++++|+..|+++++. .| .+.++..+|.++...|++++|+..+++++...
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 69 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL----------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence 34566899999999999999999999999987 44 37789999999999999999999999998764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----------------------c---------------
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------------------Y--------------- 237 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~--------------- 237 (581)
|....++..+|.++...|++++|+..|++++...... .
T Consensus 70 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 70 ----PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp ----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred ----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 4455678999999999999999999999987642100 0
Q ss_pred ---------CC------------------------CCHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhc--
Q 008016 238 ---------GK------------------------TSILLVTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR-- 279 (581)
Q Consensus 238 ---------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~-- 279 (581)
.+ ..+.....+..+|.++.. .|++++|+..++++++..+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 00 001125667778887776 8999999999999999654333
Q ss_pred CCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 280 GTES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 280 ~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.+++ |....++..+|.++...|++++|...++++++. .|. ..++..+|.++...|++++|+..++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 677889999999999999999999999999986 234 788999999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 435 (581)
+.. .++. ..++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+
T Consensus 297 ~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 297 LKL-------DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HTT-------CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred hhc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hhhHHHHHHHHHHHHHcCCHHHHH
Confidence 875 2333 3456889999999999999999999998752 223457889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH---c
Q 008016 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR---L 512 (581)
Q Consensus 436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~ 512 (581)
..+++++.. .|....++..+|.++...|++++|+..++++++..... +.......++..+|.++.. .
T Consensus 359 ~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 359 TLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp HHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhc
Confidence 999999885 34445688999999999999999999999999876321 1111113478999999999 9
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 513 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 513 g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
|+++ +|+..++++++.. |+...++..+|.+|...|++++|...|++++.+.++..+.
T Consensus 429 ~~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 429 ENFI-EATNLLEKASKLD--------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp THHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred CCHH-HHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 9999 9999999999852 4445778999999999999999999999999988765543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-31 Score=272.07 Aligned_cols=395 Identities=13% Similarity=0.028 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV------ 192 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 192 (581)
..+...+..+...|++++|+..|++++. .+....++..++.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 186 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDL-----------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCG-----------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhc-----------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence 3466788889999999999999888753 24456788999999999999999999988421100
Q ss_pred ---hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--------------------------------
Q 008016 193 ---DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-------------------------------- 237 (581)
Q Consensus 193 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------- 237 (581)
.......+....+++.+|.+|...|++++|+..|++++.......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 000011244577899999999999999999999999986521000
Q ss_pred ------------C-------------------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 238 ------------G-------------------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 238 ------------~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
. ...+....++..++.+|...|++++|+.+|+++++. .|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 338 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYN 338 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------Cccc
Confidence 0 000123456677788888888888888888887765 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 366 (581)
..++..++.++...|++++|...+++++.. .|....++..+|.+|...|++++|..+|+++++. .
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 403 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------D 403 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------C
Confidence 455677788888888888888888887754 3445678889999999999999999999999886 2
Q ss_pred CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 008016 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (581)
+.. ..++..++.+|...|++++|+++|++++... |....++..+|.+|...|++++|+++|+++++.
T Consensus 404 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 470 (597)
T 2xpi_A 404 PQF---GPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-- 470 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 222 3467889999999999999999999988652 333467888999999999999999999999875
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKR 525 (581)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~~A~~~~~~ 525 (581)
.|....++..+|.++...|++++|+++|+++++..... +..|. ...++..++.++...|+++ +|+..+++
T Consensus 471 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 541 (597)
T 2xpi_A 471 ------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYD-AAIDALNQ 541 (597)
T ss_dssp ------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence 34455788999999999999999999999999876543 23444 3788999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 526 VLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 526 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
+++.. |+...++..++.+|...|++++|.+.|++++++.++...
T Consensus 542 ~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 542 GLLLS--------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 98852 334578899999999999999999999999999876543
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.5e-31 Score=264.79 Aligned_cols=394 Identities=16% Similarity=0.148 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+...|..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 45567999999999999999999999999987 77788999999999999999999999999998764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH------------------------HHcCC---------CCH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE------------------------SRYGK---------TSI 242 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~~~---------~~~ 242 (581)
|....++..+|.++...|++++|+..|+ ++.... ..... ...
T Consensus 90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 ----PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred ----CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 4455678999999999999999999995 443211 11000 000
Q ss_pred ---------------------------HHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHHhcCCCChh--
Q 008016 243 ---------------------------LLVTSLLGMAKVLG--------SIGRAKKAVEIYHRVITILELNRGTESAD-- 285 (581)
Q Consensus 243 ---------------------------~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 285 (581)
........++..+. ..|++++|+..++++++. .++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~-----~p~~~~~~ 239 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA-----NTVDDPLR 239 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----CCCcchhh
Confidence 00002222222222 234566666666666654 223332
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 286 --LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 286 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
.+.++..+|.++...|++++|+..++++++. .|. ..++..+|.++...|++++|+.+++++++.
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 305 (537)
T 3fp2_A 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL----- 305 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----
Confidence 3567889999999999999999999999986 344 678899999999999999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.|+. ..++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|+..++++++
T Consensus 306 --~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 306 --NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp --CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2333 4467899999999999999999999999862 23346788999999999999999999999998
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc----------C
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------G 513 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g 513 (581)
. .|....++..+|.++...|++++|+..++++++..... +........+..++.++... |
T Consensus 373 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 373 K--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp H--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred h--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 5 35556688999999999999999999999999987443 12222234467788899988 9
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 514 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 514 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
+++ +|+..++++++. .|+...++..+|.+|...|++++|+..|++++++.+...+.
T Consensus 443 ~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 443 KFN-AAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999 999999999985 24445788999999999999999999999999998765543
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.8e-29 Score=249.30 Aligned_cols=381 Identities=14% Similarity=0.103 Sum_probs=301.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL 195 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 195 (581)
.....+...|..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--- 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence 44566889999999999999999999999986 67778899999999999999999999999988764
Q ss_pred CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH------------HHHHHHHHHhcCCHHH
Q 008016 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS------------LLGMAKVLGSIGRAKK 263 (581)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~ 263 (581)
|....++..+|.+|...|++++|+..|++++.. .++.+....+ +..+|.++...|++++
T Consensus 91 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 91 ----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344567899999999999999999999999874 2222211122 4455888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (581)
|+..++++++. .|....++..+|.+|...|++++|+..|+++++.. |....++..+|.+|...|
T Consensus 162 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 162 AIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC
Confidence 99999999987 45567889999999999999999999999999862 344678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH---------HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-
Q 008016 344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMR---------IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS- 413 (581)
Q Consensus 344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 413 (581)
++++|+..+++++.. .|+.......+ ..+|.++...|++++|+.+|++++... +.++.
T Consensus 226 ~~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~ 293 (450)
T 2y4t_A 226 DHELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEY 293 (450)
T ss_dssp CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred CHHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHH
Confidence 999999999999976 34444433222 344999999999999999999998862 33333
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
....+..+|.++...|++++|+..+++++++ .|....++..+|.++...|++++|+..+++++++. |
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p 360 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-----E 360 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----S
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----c
Confidence 3568899999999999999999999999985 45666789999999999999999999999998743 4
Q ss_pred CChhHHHHHHHHHHH------------HHHcC-----CChHHHHHHHHH-HHHHHHHhcCCCC--HHHHHHHHHHHHHHH
Q 008016 494 DSLPVGEALDCLVSI------------QTRLG-----EDDTKLLELLKR-VLRIQEREFGSES--EEVMLTLKKVVSYLD 553 (581)
Q Consensus 494 ~~~~~~~~~~~la~~------------~~~~g-----~~~~~A~~~~~~-a~~~~~~~~~~~~--~~~~~~~~~la~~~~ 553 (581)
+++ .++..++.+ |...| +.+ ++...|++ +++.......... ......+..++.+|.
T Consensus 361 ~~~---~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~-~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~ 436 (450)
T 2y4t_A 361 NDQ---QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ-EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436 (450)
T ss_dssp SCH---HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT-HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred chH---HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH-HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 444 556666633 44445 344 67777776 5543322211111 224557788999999
Q ss_pred HcCChhhhHH
Q 008016 554 KLGRKEEKFP 563 (581)
Q Consensus 554 ~~g~~~~A~~ 563 (581)
..|+.+++..
T Consensus 437 ~L~d~~~r~~ 446 (450)
T 2y4t_A 437 VLSDPEMRKK 446 (450)
T ss_dssp HSSGGGGC--
T ss_pred HhCCHHHHHh
Confidence 9999887654
No 7
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=263.88 Aligned_cols=396 Identities=10% Similarity=-0.018 Sum_probs=274.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--CcchHHHHHHHH
Q 008016 132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--DEPLLDAILLHM 209 (581)
Q Consensus 132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 209 (581)
++.+.++..+++.+..... ..+.+..+..++.+|.++...|++++|++.+++++++...... .++....++.++
T Consensus 25 ~~~~~~l~~~e~~~~~~~~----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl 100 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTE----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTT----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 4455555555554432211 2234445678899999999999999999999999988755432 356677789999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
|.+|..+|++++|+.++++++.+.+...++.++..+.++..+|.++... +++++|+.+|++++++ .|...
T Consensus 101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~ 172 (472)
T 4g1t_A 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNP 172 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCH
Confidence 9999999999999999999999988876655555667788888777654 5799999999999998 44455
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHH
Q 008016 288 LPLFSLGSLF---IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 288 ~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~ 360 (581)
.++..++.++ ...++.++|++.+++++++ +|....++..+|..+. ..|++++|..++++++..
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-- 242 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-- 242 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--
Confidence 6666666664 4568889999999999986 3444555666666554 456788999999999886
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------------
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS------------ 428 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 428 (581)
.|+. ..++.++|.+|...|++++|+..++++++. +|....++..+|.+|...
T Consensus 243 -----~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 243 -----APGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp -----CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -----CccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2333 345689999999999999999999999986 355567788888887653
Q ss_pred -------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 008016 429 -------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 501 (581)
Q Consensus 429 -------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (581)
+.+++|+..+++++++ +|....++..+|.++...|++++|+.+|++++++. +++......
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~ 373 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLL 373 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHH
Confidence 2355666666666653 34555677899999999999999999999998742 333333345
Q ss_pred HHHHHHHH-HHcCCChHHHHHHHHHHHHHH-----------------HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016 502 LDCLVSIQ-TRLGEDDTKLLELLKRVLRIQ-----------------EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP 563 (581)
Q Consensus 502 ~~~la~~~-~~~g~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 563 (581)
+..++.+. ...|+++ +|+..|++++++. ++.+ ..+|..+.++..||.+|...|++++|++
T Consensus 374 ~~~~~~~~~~~~~~~~-~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCED-KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHTSSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHCCCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666654 4678888 9999999998642 1111 1235556789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 008016 564 LKKRLSNLRMKYKQKVQ 580 (581)
Q Consensus 564 ~~~~a~~l~~~~~~~~~ 580 (581)
+|++++++.+....+..
T Consensus 452 ~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 452 DSERGLESGSLIPSASS 468 (472)
T ss_dssp -----------------
T ss_pred HHHHHHhcCCCCCcHhh
Confidence 99999999988776543
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-29 Score=258.81 Aligned_cols=394 Identities=12% Similarity=0.031 Sum_probs=306.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
....+...+..+.+.|++++|+.+|++++.. .|+. ..+..++.++...|++++|+..++++...
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI----------TGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY----- 146 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh----------CCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----
Confidence 3455788889999999999999999999864 2322 56788999999999999999999986432
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE--------SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
+....+++.++.+|...|++++|+..|++...... .......+....++..+|.+|...|++++|+..|
T Consensus 147 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 147 ---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp ---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22345788999999999999999999985321100 0000011345788999999999999999999999
Q ss_pred HHHHHHHHHhc--------------------------------------------C-------------------CCChh
Q 008016 269 HRVITILELNR--------------------------------------------G-------------------TESAD 285 (581)
Q Consensus 269 ~~al~~~~~~~--------------------------------------------~-------------------~~~~~ 285 (581)
+++++...... . ...+.
T Consensus 224 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 99876521100 0 01124
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
...++..++.+|...|++++|+..|+++++. .|....++..++.++...|++++|...+++++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 368 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------- 368 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------
Confidence 4566777888888888888888888887764 1223345667788888888888888888887754
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
.++. ..++..+|.+|...|++++|+.+|++++.. .|....++..++.+|...|++++|++.|+++++.
T Consensus 369 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 436 (597)
T 2xpi_A 369 HPEK---AVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL- 436 (597)
T ss_dssp CTTS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-
T ss_pred Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2222 345678999999999999999999999875 2344568889999999999999999999999873
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR 525 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~ 525 (581)
.|....++..++.+|...|++++|+++|+++++.. +++ ..++..++.++...|+++ +|+.+|++
T Consensus 437 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~-~A~~~~~~ 500 (597)
T 2xpi_A 437 -------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQ-TAINHFQN 500 (597)
T ss_dssp -------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 34455688899999999999999999999998753 343 367899999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 526 VLRIQEREFGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 526 a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
++++.... +..|+ ...++..+|.+|.+.|++++|+..|++++++.++
T Consensus 501 ~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 501 ALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 99876542 22344 3688999999999999999999999999987653
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.98 E-value=3.5e-29 Score=243.77 Aligned_cols=339 Identities=18% Similarity=0.185 Sum_probs=295.3
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (581)
......+..+|.++...|++++|+..+++++... +.+......++..+|.++...|++++|+.++++++.+....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 80 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-- 80 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence 3445678899999999999999999999998873 33444456789999999999999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------------
Q 008016 239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------------- 302 (581)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 302 (581)
.+.+....++..+|.++...|++++|+.++++++++.... .+.+....++..+|.+|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 4567788999999999999999999999999999998765 3445667899999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016 303 ----AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378 (581)
Q Consensus 303 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 378 (581)
+++|+.++.+++.+.... ++.+....++.++|.++...|++++|+.++++++++.... +++.....++.+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~ 232 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence 999999999999988775 4566788899999999999999999999999999998763 455666778899
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458 (581)
Q Consensus 379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 458 (581)
+|.++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++.... ++.+....
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~ 308 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR 308 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence 9999999999999999999999998765 4455667899999999999999999999999999987765 33456677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
++..+|.++...|++++|..++++++++.... .+.+....++..++.++...|+..
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhH
Confidence 88999999999999999999999999998765 455677888999999999999876
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.98 E-value=7e-29 Score=241.62 Aligned_cols=341 Identities=17% Similarity=0.140 Sum_probs=294.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
....+...|..+...|++++|+.+|++++... ..+......++..+|.++...|++++|+.++++++.+.... .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence 34567889999999999999999999999862 22333457889999999999999999999999999998764 4
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC-----------------
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN----------------- 344 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------- 344 (581)
+.+....++..+|.++...|++++|+.++++++++.... .+.+....++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 567788899999999999999999999999999998876 3445678899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 008016 345 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL 421 (581)
Q Consensus 345 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 421 (581)
+++|+.++++++.+.... ++.+....++.++|.++...|++++|+.++++++.+.... .+.+....++..+
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 233 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNL 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence 999999999999998763 4567777889999999999999999999999999998775 4456677799999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 008016 422 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA 501 (581)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (581)
|.++...|++++|+.++++++.+.... ++.+....++..+|.++...|++++|..++++++++.... .+.+....+
T Consensus 234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~ 309 (406)
T 3sf4_A 234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRA 309 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 999999999999999999999987664 3345557788999999999999999999999999988765 345666788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016 502 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP 563 (581)
Q Consensus 502 ~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 563 (581)
+..+|.++...|+++ +|+.++++++++.... ...+....++..++.++...|+...+..
T Consensus 310 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 310 CWSLGNAYTALGNHD-QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 999999999999999 9999999999998775 3457778899999999999998855443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=8.1e-28 Score=229.88 Aligned_cols=329 Identities=15% Similarity=0.071 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
+..++..|..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 456889999999999999999999999987 67778899999999999999999999999988764
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------HHHHHhcCCHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM------------AKVLGSIGRAKKAV 265 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~ 265 (581)
|....++..+|.++...|++++|+..+++++... +.......++..+ |.++...|++++|+
T Consensus 68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3344678999999999999999999999998742 1000333444444 89999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
..++++++. .|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence 999999987 4555788999999999999999999999999864 455567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENM---------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FV 415 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~ 415 (581)
++|+..++++++. .|+....... ...+|.++...|++++|+..+++++... ++.+. ..
T Consensus 205 ~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~ 272 (359)
T 3ieg_A 205 ELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTV 272 (359)
T ss_dssp HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHH
T ss_pred HHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHH
Confidence 9999999999986 3444433222 2355889999999999999999998863 33332 34
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
..+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|...|++++++. |++
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~ 339 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-----END 339 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Confidence 56788999999999999999999999985 45567789999999999999999999999998753 444
Q ss_pred hhHHHHHHHHHHHHHHc
Q 008016 496 LPVGEALDCLVSIQTRL 512 (581)
Q Consensus 496 ~~~~~~~~~la~~~~~~ 512 (581)
+ .+...++.++...
T Consensus 340 ~---~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 340 Q---QIREGLEKAQRLL 353 (359)
T ss_dssp H---HHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHH
Confidence 4 4555666655443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.4e-28 Score=241.28 Aligned_cols=349 Identities=13% Similarity=0.104 Sum_probs=277.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+|..+..+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..++++++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---- 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 78899999999999999999999999999988763 3446678999999999999999999999999862
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH------------HHHHHHHHHHcCCHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP------------LFSLGSLFIKEGKAVD 305 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~ 305 (581)
|....++..+|.+|...|++++|+..|+++++. .++.+....+ +..+|.++...|++++
T Consensus 91 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 91 ----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 223678999999999999999999999999875 2222211133 3445778999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (581)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (581)
|+..|+++++. .|....++..+|.+|...|++++|+..++++++.. ++. ..++..+|.++..
T Consensus 162 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 162 AIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------NDN---TEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------CSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHH
Confidence 99999999876 34556788999999999999999999999999873 222 4567899999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 008016 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHL---------LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS- 455 (581)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 455 (581)
.|++++|+..+++++... ++++.....+ ..+|.++...|++++|+.+|++++.+ .++++.
T Consensus 224 ~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~ 293 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEY 293 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred cCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHH
Confidence 999999999999998762 3444333222 34499999999999999999999985 233332
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
....+..+|.++...|++++|+..+++++++. |....++..+|.++...|+++ +|+..+++++++ .
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~ 359 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------PDNVNALKDRAEAYLIEEMYD-EAIQDYETAQEH-----N 359 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHh-----C
Confidence 24578899999999999999999999998753 444578999999999999999 999999999874 2
Q ss_pred CCCHHHHHHHHHHH------------HHHHHcC-----ChhhhHHHHHH-HHHH
Q 008016 536 SESEEVMLTLKKVV------------SYLDKLG-----RKEEKFPLKKR-LSNL 571 (581)
Q Consensus 536 ~~~~~~~~~~~~la------------~~~~~~g-----~~~~A~~~~~~-a~~l 571 (581)
++ ...++..++ ..|...| +.+++.+.|++ ++..
T Consensus 360 p~---~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 360 EN---DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp SS---CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred cc---hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 33 345566666 3344555 45566777776 4443
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=2.3e-27 Score=231.18 Aligned_cols=315 Identities=18% Similarity=0.200 Sum_probs=275.5
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.+.....+..+|..+...|++++|+..+++++... +.+......++..+|.++...|++++|+.++++++.+.+..
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 119 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM- 119 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence 35667788899999999999999999999998873 33334456788999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------------
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------- 302 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------- 302 (581)
.+.+....++..+|.+|...|++++|+.++++++++.... .+.+....++..+|.+|...|+
T Consensus 120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 4567788999999999999999999999999999998775 3567788899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016 303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (581)
Q Consensus 303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (581)
+++|+.++++++++.... .+.+....++.++|.++...|++++|+.++++++++.... .+......++.++|
T Consensus 197 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la 270 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----GDRAAERRANSNLG 270 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHH
Confidence 999999999999988776 4556778899999999999999999999999999998763 44556667889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (581)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (581)
.++...|++++|+.++++++.+.... .+......++..+|.++...|++++|+.++++++.+.... .+.+....++
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 346 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC 346 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence 99999999999999999999998765 4455667889999999999999999999999999988776 3345667789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIREI 489 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 489 (581)
..+|.++...|++++|..++++++++.+.
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999997643
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-28 Score=244.58 Aligned_cols=356 Identities=15% Similarity=0.072 Sum_probs=294.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK- 196 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 196 (581)
...+...+..+...|++++|+..++++++. .|....++..+|.++...|++++|+..++++........
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALEL----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 345888999999999999999999999987 777889999999999999999999999998766431000
Q ss_pred -----------------------------------------------------------------------CCcchHHHH
Q 008016 197 -----------------------------------------------------------------------DDEPLLDAI 205 (581)
Q Consensus 197 -----------------------------------------------------------------------~~~~~~~~~ 205 (581)
-..|.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
T 2gw1_A 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188 (514)
T ss_dssp GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence 000223556
Q ss_pred HHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHc--CCCC----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 206 LLHMGSMYST---LENYEKSMLVYQRVINVLESRY--GKTS----ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 206 ~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
+..+|..+.. .|++++|+..+++++...+... .+++ +....++..+|.++...|++++|+..++++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 266 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-- 266 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 6778887776 8999999999999998654433 2232 667889999999999999999999999999987
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
.|. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++
T Consensus 267 ------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 267 ------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp ------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred ------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344 788999999999999999999999999864 34445678999999999999999999999998
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
.. .+.. ..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.
T Consensus 332 ~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 332 EL-------DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HT-------CSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hh-------Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 85 2333 3366889999999999999999999998762 2334578899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 513 (581)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 513 (581)
++++++...... +.......++..+|.++.. .|++++|+..++++++.. |....++..+|.++...|
T Consensus 394 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 394 QYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--------PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhc
Confidence 999999864322 1111224478999999999 999999999999998853 334477899999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 008016 514 EDDTKLLELLKRVLRI 529 (581)
Q Consensus 514 ~~~~~A~~~~~~a~~~ 529 (581)
+++ +|+..+++++++
T Consensus 464 ~~~-~A~~~~~~a~~~ 478 (514)
T 2gw1_A 464 DID-EAITLFEESADL 478 (514)
T ss_dssp CHH-HHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHh
Confidence 999 999999999985
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=3.8e-27 Score=229.65 Aligned_cols=316 Identities=16% Similarity=0.104 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
+.....+..+|..+...|++++|+.+++++++. .+++ .....++..+|.+|...|++++|+.++++++++.+..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 456777889999999999999999999999997 2333 3345789999999999999999999999999998775
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC------------
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------ 388 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------ 388 (581)
.+++....++..+|.+|...|++++|+.++++++.+.... .+.+....++.++|.+|...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 4567788999999999999999999999999999998764 4566778889999999999999
Q ss_pred -----hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 008016 389 -----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463 (581)
Q Consensus 389 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 463 (581)
+++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++.... .+......++..+
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 269 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNL 269 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence 999999999999988776 4557778899999999999999999999999999988764 2344556688999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 008016 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 543 (581)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 543 (581)
|.++...|++++|+.++++++.+.... .+......++..+|.++...|+++ +|+.++++++++.... ...+....
T Consensus 270 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~ 344 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIAQEL--GDRIGEAR 344 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHC--CChHHHHH
Confidence 999999999999999999999988754 344556788999999999999999 9999999999988775 23567778
Q ss_pred HHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016 544 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
++..+|.+|...|++++|..+|++++.+.++.+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999876554
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=5.5e-27 Score=224.06 Aligned_cols=328 Identities=13% Similarity=0.081 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (581)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (581)
.+..+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+..+++++... ++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~ 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-----MD 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence 35678899999999999999999999988764 3445678999999999999999999999999862 22
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHH------------HHHHHHcCCHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA---DLVLPLFSL------------GSLFIKEGKAVD 305 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~ 305 (581)
...++..+|.++...|++++|+..++++++. .| ....++..+ |.++...|++++
T Consensus 70 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 70 ---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 3578899999999999999999999999876 33 444455444 799999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (581)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (581)
|+..++++++. .|....++..+|.++...|++++|+..+++++.. .|+. ..++..+|.++..
T Consensus 139 A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~ 200 (359)
T 3ieg_A 139 AITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHH
Confidence 99999999986 3445678899999999999999999999999875 3333 3467899999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChHHHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 008016 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTH---------LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS- 455 (581)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 455 (581)
.|++++|+..+++++... ++++..... ...+|.++...|++++|+..+++++.. .++++.
T Consensus 201 ~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 270 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSVAEY 270 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred cCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHH
Confidence 999999999999998763 344443222 235588999999999999999999885 233322
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
....+..+|.++...|++++|+..++++++.. |....++..+|.++...|+++ +|+..|++++++
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~------ 335 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYD-EAIQDYEAAQEH------ 335 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc------
Confidence 22457789999999999999999999998852 344578999999999999999 999999999874
Q ss_pred CCCHHHHHHHHHHHHHHHHcC
Q 008016 536 SESEEVMLTLKKVVSYLDKLG 556 (581)
Q Consensus 536 ~~~~~~~~~~~~la~~~~~~g 556 (581)
.|+...+...++.++...+
T Consensus 336 --~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 336 --NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp --CTTCHHHHHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHHHH
Confidence 2444456666676666544
No 17
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=1.4e-26 Score=219.15 Aligned_cols=310 Identities=17% Similarity=0.209 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
...+...|..+...|++++|+..+++++... +.+......++..+|.++...|++++|+.++++++.+.... .+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 79 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ 79 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence 4567788999999999999999999998873 33444456788999999999999999999999999988775 455
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-------------------
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------------------- 302 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 302 (581)
+....++..+|.++...|++++|+.++++++++.... ++.+....++..+|.++...|+
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 6778899999999999999999999999999998764 3455667799999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 008016 303 -AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381 (581)
Q Consensus 303 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~ 381 (581)
+++|..++++++.+.+.. ++.+....++..+|.++...|++++|+.++++++++.... +++.....++..+|.
T Consensus 158 ~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Confidence 999999999999988776 4556678899999999999999999999999999998763 455666778899999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461 (581)
Q Consensus 382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 461 (581)
++...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+.... .+.+....++.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~ 307 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACW 307 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHH
Confidence 9999999999999999999988765 4456667889999999999999999999999999987765 23455667889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 462 HLGITLYHLNRDKEAEKLVLEALYIRE 488 (581)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (581)
.+|.++...|++++|..++++++++..
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=1.4e-26 Score=219.16 Aligned_cols=313 Identities=15% Similarity=0.108 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
...+...|..+...|++++|+.+++++++.. ..+......++..+|.++...|++++|+.+++++++..+.. ++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence 4457778999999999999999999999972 12233346789999999999999999999999999998776 45
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC----------------
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------- 388 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 388 (581)
.+....++..+|.++...|++++|+.++++++++..+. ++......++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 66778899999999999999999999999999998763 4556667788999999999999
Q ss_pred ----hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 389 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 389 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
+++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++++.... ++.+....++..+|
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG 230 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 999999999999987766 4557778899999999999999999999999999987765 33455667899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 008016 465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT 544 (581)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 544 (581)
.++...|++++|..++++++++.... .+.+....++..+|.++...|+++ +|+.++++++++..... ..+....+
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~~~~~~~ 305 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQELK--DRIGEGRA 305 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 99999999999999999999988654 345566788999999999999999 99999999999887652 34666788
Q ss_pred HHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 545 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 545 ~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
+..+|.+|...|++++|..++++++.+.++.+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999987764
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=236.43 Aligned_cols=361 Identities=15% Similarity=0.110 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-CC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 198 (581)
.+..+|..+...|++++|++.|++++++.+.... ....+....++.++|.+|..+|++++|+.++++++.+..... ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4667889999999999999999999998776531 223566788899999999999999999999999998876643 23
Q ss_pred cchHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV---LGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~ 273 (581)
++..+.++..+|.++... +++++|+.+|++++.+ .++++ .++..++.+ +...++.++|+..++++++
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 455667788888776654 5799999999999986 34444 444555555 4566888999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (581)
+ +|....++..+|..+.. .|++++|..++++++.. +|....++.++|.+|...|++++|+
T Consensus 204 l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 204 L--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp H--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred c--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHH
Confidence 8 45556667677766554 56788999999999876 4566678899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------------------ChHHHHHHHHHHHHHHHHhcCCC
Q 008016 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------------------RGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------------~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
..++++++. .|+. ..++.++|.+|...+ .+++|+..+++++..
T Consensus 268 ~~~~~al~~-------~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------- 329 (472)
T 4g1t_A 268 ELLKKALEY-------IPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-------- 329 (472)
T ss_dssp HHHHHHHHH-------STTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHh-------CCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------
Confidence 999999987 2333 445677888775432 244555555555544
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHH--
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIR-- 487 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~-- 487 (581)
.|....++..+|.+|...|++++|+.+|++++++ .+++......+..+|.+ +...|++++|+..|++++++.
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3444457888999999999999999999999874 22222233345566654 457899999999999998642
Q ss_pred ---------------HHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 488 ---------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 488 ---------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
+... ..+|..+.++..+|.+|...|+++ +|+++|++|+++.
T Consensus 405 ~~~~~~~~~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~-~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQ-QADEDSERGLESG 460 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred cHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC
Confidence 1110 123444578999999999999999 9999999999853
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4.8e-26 Score=230.24 Aligned_cols=350 Identities=13% Similarity=0.074 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc---
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL--- 195 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 195 (581)
..+...|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..++ ........
T Consensus 60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 60 VFYSNISACYISTGDLEKVIEFTTKALEI----------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 45888999999999999999999999987 77888999999999999999999999885 33211100
Q ss_pred ----------------------------------------------------------CCCcchHHHHHHHHHHHH----
Q 008016 196 ----------------------------------------------------------KDDEPLLDAILLHMGSMY---- 213 (581)
Q Consensus 196 ----------------------------------------------------------~~~~~~~~~~~~~l~~~~---- 213 (581)
....+........++..+
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 000011111222222222
Q ss_pred ----HhccCHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016 214 ----STLENYEKSMLVYQRVINVLESRYGKTSIL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (581)
Q Consensus 214 ----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (581)
...|++++|+..+++++... ++++. .+.++..+|.++...|++++|+..++++++. .|.
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~ 275 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT 275 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC
Confidence 22346666666666666542 33332 4667999999999999999999999999987 344
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
..++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++..
T Consensus 276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 339 (537)
T 3fp2_A 276 -PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL------- 339 (537)
T ss_dssp -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred -chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence 678999999999999999999999999986 3455678999999999999999999999999987
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
.|+. ..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..++++++..
T Consensus 340 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 340 NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 2332 2456889999999999999999999998872 3334578889999999999999999999999976
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016 446 TKTVGPDDQSISFPMLHLGITLYHL----------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 515 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 515 (581)
... +........+..+|.++... |++++|+.+++++++.. |....++..+|.++...|++
T Consensus 409 ~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 409 EVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--------PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCH
T ss_pred Ccc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccH
Confidence 443 12222333467788999999 99999999999998863 34447899999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 008016 516 DTKLLELLKRVLRIQ 530 (581)
Q Consensus 516 ~~~A~~~~~~a~~~~ 530 (581)
+ +|+..|++++++.
T Consensus 479 ~-~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 D-EAIELFEDSAILA 492 (537)
T ss_dssp H-HHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHHhC
Confidence 9 9999999999864
No 21
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=2.2e-25 Score=214.59 Aligned_cols=355 Identities=9% Similarity=-0.021 Sum_probs=272.2
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH-HHHHHHhccCHHHHH-----------HH
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSM-----------LV 225 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~-----------~~ 225 (581)
.++......+-...+...+++++|..+++.+.........+ +.....+.. ..+.....++++.+. ..
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEED-QDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 34444455555566778999999999999988777554333 333221111 122333345555554 55
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Q 008016 226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD 305 (581)
Q Consensus 226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 305 (581)
+++.-...... +.......++..|..+...|++++|+.++++++++.+.. ++.+..+.++..+|.+|...|++++
T Consensus 87 ~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 87 LLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55433211110 011123345669999999999999999999999987653 4556688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016 306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (581)
Q Consensus 306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (581)
|+.++.+++++.++. +...+..+.++.++|.+|...|++++|+.++++++++.++. ++++....++.++|.+|..
T Consensus 162 A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 162 SMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp HHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHH
Confidence 999999999998765 22256678899999999999999999999999999998863 5667778889999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI 465 (581)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 465 (581)
.|++++|+.++++++.+.+.. .+.+....++.++|.++...|++++|+.++++++++.... .++.....+..++.
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKS 311 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 999999999999999998765 2337778899999999999999999999999999988775 23444445678999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 466 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 466 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
++...|++ ..+++++...++. ...+....++..+|.+|...|+++ +|..++++++++.+++..
T Consensus 312 ~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 312 LYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQ-KASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTSCSS
T ss_pred HHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhc
Confidence 99999995 3445555554443 455777788999999999999999 999999999998876544
No 22
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=2.3e-25 Score=214.42 Aligned_cols=351 Identities=12% Similarity=0.077 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCChHHHH-----------
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQ----------- 182 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~----------- 182 (581)
+.+...+......+..+++++|..+++++.+.... ...+++. ..++.+ .......++++.+.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~-~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~ 84 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQ----MEEDQDL-HLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh----hccchHH-HHHHHHHHHHHHHHHhhcCcccccccccccchh
Confidence 45666888888899999999999999998665432 1122222 222322 22222334444444
Q ss_pred HHHHHHHHHHhhcCCCcchH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016 183 SLLDMMSGIVDSLKDDEPLL--DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260 (581)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 260 (581)
..++.+.... ...... ...++..|..+...|++++|+.++++++.+.+.. ++.+..+.++..+|.+|...|+
T Consensus 85 ~~~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 85 DLLLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence 5555433221 111111 2345568999999999999999999999876553 4556688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (581)
+++|+.++++++++.+.. +...+..+.++..+|.+|...|++++|+.++++++++.++. ++.+..+.++.++|.+|.
T Consensus 159 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp HHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH
Confidence 999999999999998774 22256778899999999999999999999999999998876 556678889999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420 (581)
Q Consensus 341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 420 (581)
..|++++|+.++++++++.+.. .+.+....++.++|.++...|++++|+.++++++.+.... ..+.....+..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~ 308 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEES----NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEF 308 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence 9999999999999999998763 3325557888999999999999999999999999998765 23444445778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
+|.++...|++ ..+++++...++. ...+....++..+|.+|...|++++|..++++++++.+++...
T Consensus 309 l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~ 375 (383)
T 3ulq_A 309 LKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG 375 (383)
T ss_dssp HHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred HHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999995 3444444444443 3456777788999999999999999999999999988765443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=9.1e-25 Score=217.30 Aligned_cols=350 Identities=11% Similarity=0.038 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 008016 119 LELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSG 190 (581)
Q Consensus 119 ~~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 190 (581)
...+..+..+.. .+++++|+.+|+++.+. ..+.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 346777888887 89999999999999752 346789999999999 9999999999999865
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHH
Q 008016 191 IVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAK 262 (581)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 262 (581)
. . ...+++.+|.+|.. .+++++|+.+|+++.+. + ...++..+|.+|.. .++++
T Consensus 108 ~------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 108 K------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp T------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred C------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3 1 23467889999998 89999999999998763 2 25678999999998 88999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (581)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (581)
+|+.+|+++.+. ....++..+|.+|.. .+++++|..+|+++.+. ....++..+|.+
T Consensus 169 ~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~ 228 (490)
T 2xm6_A 169 MAREWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence 999999999864 136788999999998 89999999999999863 224678899999
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCC
Q 008016 339 KCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 339 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
|.. .+++++|+.+|+++++. .+ ..++.++|.+|.. .+++++|+.+|+++.+. .
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~---------~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~ 289 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQ---------GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------G 289 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------T
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------C
Confidence 997 89999999999998763 11 3456889999998 89999999999998653 2
Q ss_pred ChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLE 482 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 482 (581)
+ ..++..+|.+|... +++++|+.+|+++.+. . ...++..+|.+|...| ++++|+.+|++
T Consensus 290 ~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 290 N---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp C---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 2 34788999999998 9999999999999872 2 2357899999999877 88999999999
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----
Q 008016 483 ALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK---- 554 (581)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---- 554 (581)
+++. ++ ..++..+|.+|.. .++++ +|+.+|+++.+. ++ ..++..||.+|..
T Consensus 357 a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 357 AAAK-------GE---KAAQFNLGNALLQGKGVKKDEQ-QAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSS
T ss_pred HHHC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCC
Confidence 9862 23 3789999999999 88888 999999999872 22 5678999999999
Q ss_pred cCChhhhHHHHHHHHHHH
Q 008016 555 LGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 555 ~g~~~~A~~~~~~a~~l~ 572 (581)
.+++++|..+|+++++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999999998
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=6.1e-27 Score=224.61 Aligned_cols=314 Identities=17% Similarity=0.170 Sum_probs=242.9
Q ss_pred HHHHcCChHHHHH-HHHHHHHHHhhcCCCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016 171 GYVYIGDLKFVQS-LLDMMSGIVDSLKDDEPL-LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL 248 (581)
Q Consensus 171 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 248 (581)
++...|++++|+. .++++.... +..|. ....++.+|.++...|++++|+..|++++.. .|....++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 101 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAW 101 (368)
T ss_dssp ------------CHHHHCCCCCC----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 5667799999998 888766543 22222 2345788999999999999999999999874 23346788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (581)
..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++... ++.+..
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 168 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-----PAYAHL 168 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTGGG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHHH
Confidence 99999999999999999999999987 45567889999999999999999999999998753 222111
Q ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 008016 329 -------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL 395 (581)
Q Consensus 329 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 395 (581)
...+..++.++ ..|++++|+.+++++++.. |+.. ...++..+|.++...|++++|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 169 VTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp CC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-------cCcc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11122466666 8899999999999999872 2211 245678999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475 (581)
Q Consensus 396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 475 (581)
+++++.. .|....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++
T Consensus 240 ~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 240 FTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 9999987 2344568899999999999999999999999985 45667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCC---CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 476 AEKLVLEALYIREIAFGK---DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 476 A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
|+.++++++++.....++ .++....++..++.++...|+++ +|...++++++.+.+.++
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD-AYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG-GHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH-hHHHhHHHHHHHHHHhcC
Confidence 999999999987433111 12344688999999999999999 999999999988877654
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=1.2e-26 Score=222.61 Aligned_cols=312 Identities=16% Similarity=0.073 Sum_probs=243.2
Q ss_pred HHHhccCHHHHHH-HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016 212 MYSTLENYEKSML-VYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (581)
Q Consensus 212 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (581)
++...|++++|+. .|++++.+. ++.| .....+..+|.++...|++++|+..++++++. .|....+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA 100 (368)
T ss_dssp ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 5667799999999 888887642 2222 23456789999999999999999999999986 4566788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (581)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (581)
+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++... |+.
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 165 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAY 165 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCc
Confidence 999999999999999999999999986 34556789999999999999999999999999863 222
Q ss_pred hHHH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 370 SIME-------------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 370 ~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
.... ..+..++.++ ..|++++|+.++++++... +..+ ...++..+|.++...|++++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 2211 1112466666 8999999999999998863 2211 45688899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516 (581)
Q Consensus 437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 516 (581)
++++++.+ .|....++..+|.++...|++++|+..+++++++. |....++..+|.++...|+++
T Consensus 239 ~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 239 CFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHH
Confidence 99999985 45566789999999999999999999999998853 344578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016 517 TKLLELLKRVLRIQEREFGS---ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY 575 (581)
Q Consensus 517 ~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~ 575 (581)
+|+..+++++++.....++ .++....++..+|.+|...|++++|..+++++++..++.
T Consensus 303 -~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 303 -EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp -HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 9999999999986543111 112236789999999999999999999999998876653
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-26 Score=215.60 Aligned_cols=298 Identities=14% Similarity=0.131 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
..+...+..++..|++++|+.+|+++++. .|....++..++.++...|++++|+..++++....
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------ 86 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------ 86 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC------
Confidence 34788899999999999999999999876 66667788889999999999999999999988764
Q ss_pred cchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
|....++..+|.++...| ++++|+.++++++... |....++..+|.++...|++++|+..++++++.
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 154 (330)
T 3hym_B 87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--- 154 (330)
T ss_dssp -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 333456889999999999 9999999999998752 233567899999999999999999999999988
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
.|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++.
T Consensus 155 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 155 -----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp -----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344566778999999999999999999999875 345567899999999999999999999999999
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (581)
....... ....+....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+
T Consensus 222 ~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 222 KIKAIGN-EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHTTTSC-SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred Hhhhccc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHH
Confidence 8765311 11113335577899999999999999999999999873 33456788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHH-HHcCChH
Q 008016 438 LRICLDIMTKTVGPDDQSISFPMLHLGITL-YHLNRDK 474 (581)
Q Consensus 438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 474 (581)
+++++++ .|....++..++.++ ...|+.+
T Consensus 293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence 9999873 466677888999988 4556543
No 27
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.95 E-value=4.8e-24 Score=204.69 Aligned_cols=335 Identities=12% Similarity=0.051 Sum_probs=256.8
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH--HHHhccCHHHHH---------HHHHHHHHHHHHHcCCC
Q 008016 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS--MYSTLENYEKSM---------LVYQRVINVLESRYGKT 240 (581)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~ 240 (581)
+...+++++|..+++.+.........+ ..+. .++.+-. .....+.+..+. ..+++.-...... +
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~ 96 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEED-QDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T 96 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCC-HHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhccc-HHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence 377899999999999988777665433 3332 2233222 222234443333 4444332111110 1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
+......++..|..+...|++++|+.++++++++.... ++.+..+.++..+|.+|...|++++|+.++++++++.++.
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 12233467789999999999999999999999987664 4567788999999999999999999999999999998764
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
. ...+..+.++.++|.+|...|++++|+.++++++++.++. ++......++.++|.+|...|++++|+.++++++
T Consensus 175 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 175 P-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 1134578899999999999999999999999999998763 4556677889999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC---hHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAE 477 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~ 477 (581)
.+.+.. .+|....++..+|.++...|++++|+.++++++++.... .++.....+..++.++...|+ +.+|+
T Consensus 250 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 250 KVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 988765 345568899999999999999999999999999975543 234455567788888888888 55555
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 534 (581)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~ 534 (581)
.++++ . ...+.....+..+|.+|...|+++ +|..+|++++++.++..
T Consensus 324 ~~~~~-------~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 324 SYFEK-------K--NLHAYIEACARSAAAVFESSCHFE-QAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHH-------T--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------C--CChhHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHh
Confidence 55544 2 345667788889999999999999 99999999999876653
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=8.1e-25 Score=204.48 Aligned_cols=285 Identities=22% Similarity=0.220 Sum_probs=234.6
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.++++|....++..+|.++...|++++|+.++++++++.....+++++....++..+|.++...|++++|+.++++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999988877778889999999999999999999999999999999
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
.+.. .+++++....++..+|.++...|++++|+.++++++.+..+..+.+++....++..+|.++...|++++|+.++
T Consensus 99 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 99 REKT--LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHH--hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8764 34566777888999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-cCCCChh------HHHHHHHHHHHHHH
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLP------VGEALDCLVSIQTR 511 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~------~~~~~~~la~~~~~ 511 (581)
++++.+.....+++++....++..+|.++...|++++|..++++++++.... ++...+. ....+..++..+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 9999998888777888889999999999999999999999999999876432 1111111 22334444555555
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 512 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 512 ~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
.+.+. +|...++++.. .+|....++..+|.+|..+|++++|..+|++++++.++
T Consensus 257 ~~~~~-~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFG-EYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSC-CCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHH-HHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66666 66666666654 56888999999999999999999999999999998754
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=4.2e-26 Score=218.43 Aligned_cols=294 Identities=15% Similarity=0.106 Sum_probs=228.1
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
.....++.+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..|++++++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 128 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL------ 128 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 334557899999999999999999999999862 233678999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|....++..+|.+|...|++++|+..++++++........... .....+..+|.++...|++++|+.++++++..
T Consensus 129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999875433111100 12344566799999999999999999999987
Q ss_pred HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
.|+.. ...++.++|.++...|++++|+.++++++... |....++..+|.++...|++++|+..|
T Consensus 207 -------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 207 -------NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp -------SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23310 13467899999999999999999999999872 444568999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHcCC
Q 008016 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRLGE 514 (581)
Q Consensus 439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~ 514 (581)
++++++ +|....++..+|.++...|++++|+.+|++++++.....++.++. ...++..++.++...|+
T Consensus 271 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 271 TRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 999985 466678899999999999999999999999999886544332221 24678999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcC
Q 008016 515 DDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 515 ~~~~A~~~~~~a~~~~~~~~~ 535 (581)
.+ .+.....+.+...++.++
T Consensus 343 ~~-~a~~~~~~~l~~~~~~~~ 362 (365)
T 4eqf_A 343 PE-LFQAANLGDLDVLLRAFN 362 (365)
T ss_dssp HH-HHHHHHTTCCGGGTTTTT
T ss_pred HH-HHHHHHHhhHHHHHHhcC
Confidence 98 887777766665544443
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=212.45 Aligned_cols=301 Identities=13% Similarity=0.118 Sum_probs=246.4
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG 238 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 238 (581)
+.....+..+|..+...|++++|+..+++++... |....++..++.++...|++++|+..+++++...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY----- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence 4445678889999999999999999999987764 2223356678889999999999999999998852
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 239 KTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
|....++..+|.++...| ++++|+.++++++.. .|....++..+|.++...|++++|+..++++++..
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 223567899999999999 999999999999876 45556789999999999999999999999999872
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
|....++..+|.++...|++++|+.+++++++. .|+. ..++..+|.++...|++++|+.+++
T Consensus 156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 156 --------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-------APED---PFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp --------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcccHHHHHHHHH
Confidence 333456777999999999999999999999875 2333 4567899999999999999999999
Q ss_pred HHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016 398 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (581)
Q Consensus 398 ~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (581)
+++........... +....++..+|.++...|++++|+.++++++++ .|....++..+|.++...|++++|
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHH
Confidence 99998755422221 444568899999999999999999999999985 345567889999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHcCCCh
Q 008016 477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ-TRLGEDD 516 (581)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 516 (581)
..++++++++. |....++..++.++ ...|+.+
T Consensus 290 ~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLR--------RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTC--------SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccC--------CCchHHHHHHHHHHHHHhCchh
Confidence 99999998643 44447788899988 4555543
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=2.6e-25 Score=212.92 Aligned_cols=286 Identities=15% Similarity=0.041 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.++..|..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..+++++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 129 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------- 129 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 3778899999999999999999999987 77778899999999999999999999999998874
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
|....++..+|.+|...|++++|+..+++++.+.......... .....+..+|.++...|++++|+.+++++++.
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 206 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--- 206 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---
Confidence 4445678999999999999999999999999875443111100 12344566799999999999999999999997
Q ss_pred hcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 278 NRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 278 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
.|. ...++..+|.++...|++++|+.+++++++. .|....++.++|.++...|++++|+..++++
T Consensus 207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 5678999999999999999999999999986 3455678999999999999999999999999
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHccCH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS----FVTHLLNLAASYSRSKNF 431 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~ 431 (581)
+++ .|+. ..++.++|.++...|++++|+.++++++.+.....+..++. ...++..++.++...|+.
T Consensus 274 l~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 274 LEI-------QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHH-------CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred Hhc-------CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 987 2333 55678999999999999999999999999986643332221 356889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008016 432 VEAERLLRICLDIMTKT 448 (581)
Q Consensus 432 ~~A~~~~~~al~~~~~~ 448 (581)
+.+....++.++...+.
T Consensus 344 ~~a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 344 ELFQAANLGDLDVLLRA 360 (365)
T ss_dssp HHHHHHHTTCCGGGTTT
T ss_pred HHHHHHHHhhHHHHHHh
Confidence 99998887766654443
No 32
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.94 E-value=3.5e-24 Score=205.62 Aligned_cols=348 Identities=15% Similarity=0.093 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHH---------HH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALG--YVYIGDLKFVQ---------SL 184 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~ 184 (581)
+.+..++......+..+++++|..+++++...... ...+. ....++.+... ....+.+..+. ..
T Consensus 10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~-~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQ-DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCH-HHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccH-HHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 44556777777788999999999999987654322 11122 22233333222 22233433333 44
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 008016 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264 (581)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 264 (581)
++.+...... .++......++..|..+...|++++|+.+|++++.+.... ++.+..+.++..+|.+|...|++++|
T Consensus 85 l~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A 160 (378)
T 3q15_A 85 LETIETPQKK--LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVS 160 (378)
T ss_dssp HHHHHGGGHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccCCC--CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4443322111 0112223356778999999999999999999999887653 45577899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (581)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (581)
+.++++++++.+... ...+..+.++..+|.+|...|++++|+.++++++++.++. ++.+..+.++.++|.+|...|+
T Consensus 161 ~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 161 MYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCC
Confidence 999999999987641 1234678899999999999999999999999999998765 4455678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016 345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (581)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (581)
+++|+.++++++.+.+.. .++....++.++|.++...|++++|+.++++++.+..+. ..+.....+..++.+
T Consensus 238 ~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREK-----VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence 999999999999988763 233337788999999999999999999999999986543 234444467888999
Q ss_pred HHHccC---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016 425 YSRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492 (581)
Q Consensus 425 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 492 (581)
+...|+ +.+|+.++++. ...+.....+..+|.+|...|++++|..+|++++++.++...
T Consensus 310 y~~~~~~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK---------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC---------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999888 55555555542 345666778889999999999999999999999998876543
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.5e-24 Score=201.17 Aligned_cols=284 Identities=21% Similarity=0.240 Sum_probs=234.5
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
..++++|....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.++...|++++|+.++++++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888999999999999999999999999999999998887778889999999999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK 353 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (581)
..+...+++.+....++..+|.++...|++++|+.++++++++.+...+++++....++..+|.++...|++++|+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99888777889999999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChH------HHHHHHHHHHHHH
Q 008016 354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-KGKEHPS------FVTHLLNLAASYS 426 (581)
Q Consensus 354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~------~~~~~~~la~~~~ 426 (581)
+++...+.. .+++.+....++..+|.++...|++++|+.++++++...... ++...+. ....+..++..+.
T Consensus 178 ~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 178 RALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 999998764 455677778889999999999999999999999999876542 1111111 2233344445555
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..+.+.+|...++++.. .+|....++..+|.+|...|++++|..++++++++.
T Consensus 256 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 56666667777776654 467888899999999999999999999999999875
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=6.1e-23 Score=204.15 Aligned_cols=352 Identities=13% Similarity=0.008 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 008016 119 LELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSG 190 (581)
Q Consensus 119 ~~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 190 (581)
...+.++..+.. .+++++|+.+|+++.+. ..+.++..+|.+|.. .+++++|+.+++++..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 347778888888 99999999999999752 345678899999998 8999999999999765
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHH
Q 008016 191 IVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAK 262 (581)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 262 (581)
. ....+++.+|.+|.. .+++++|+.+|+++.+. . ...++..+|.+|.. .++++
T Consensus 144 ~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 144 Q---------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp T---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred C---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 3 124567899999997 88999999999999873 2 25788999999998 89999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (581)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (581)
+|+.+|+++.+. + ...++..+|.+|.. .+++++|..+|+++.+. ....++..+|.+
T Consensus 205 ~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~ 264 (490)
T 2xm6_A 205 ISAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence 999999999864 1 25678899999997 89999999999998763 234678899999
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhcCC
Q 008016 339 KCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 339 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
|.. .+++++|+.+|+++.+. .+ ..++..+|.+|... +++++|+.+|+++.+.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~------- 325 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQ---------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ------- 325 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHc---------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------
Confidence 999 99999999999998753 12 33568899999998 9999999999998764
Q ss_pred CChHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLE 482 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 482 (581)
.+ ..++.++|.+|...| ++++|+.+|+++.+. ....++..+|.+|.. .+++++|+.+|++
T Consensus 326 ~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 326 GD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp TC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 12 357889999999866 899999999999872 234688999999999 8999999999999
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 008016 483 ALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 558 (581)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 558 (581)
+.+. .+ ..++..||.+|.. .++.+ +|+.+|+++++.. ++.|....+...++.++....+.
T Consensus 393 A~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~-~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~~~~ 456 (490)
T 2xm6_A 393 AAEQ-------GL---SAAQVQLGEIYYYGLGVERDYV-QAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQLQQ 456 (490)
T ss_dssp HHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHhC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhHHHH
Confidence 9762 23 3688999999998 89999 9999999999853 22366777888888877654332
Q ss_pred hh--hHHHHHHHH
Q 008016 559 EE--KFPLKKRLS 569 (581)
Q Consensus 559 ~~--A~~~~~~a~ 569 (581)
.+ |..+++++.
T Consensus 457 a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 457 AELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 22 555555543
No 35
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.93 E-value=1.9e-23 Score=192.17 Aligned_cols=271 Identities=21% Similarity=0.172 Sum_probs=228.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (581)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (581)
....|++++|+.+++++++..++..+.+++....++..+|.++...|++++|+.++++++++.++. .+++++....++
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 88 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--LGKDHPAVAATL 88 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCCcchHHHHHH
Confidence 456799999999999999999999888889999999999999999999999999999999998764 456678888899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 456 (581)
.++|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.++++++++.....++++|..
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG 535 (581)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~ 535 (581)
..++..+|.++...|++++|+.++++++++.... .+..++.....+..++..+...+... .+. .+..+..... ..+
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~ 245 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSA-PYGEYGSWYK-ACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC-C--------------CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh-HHH-HHHHHHHHHH-hcC
Confidence 9999999999999999999999999999986543 33334445556667777776666554 433 3444544443 345
Q ss_pred CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
..+|....++..+|.+|..+|++++|..+|++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5779999999999999999999999999999998753
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.92 E-value=4.8e-23 Score=189.47 Aligned_cols=270 Identities=20% Similarity=0.183 Sum_probs=226.0
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (581)
....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++++.+...+++++....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 35689999999999999999999988888999999999999999999999999999999999988888888999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (581)
Q Consensus 293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (581)
+|.++...|++++|+.+++++++..++..+++++....++.++|.++...|++++|+.++++++++.+.. .+++++..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 168 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPNV 168 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence 9999999999999999999999999998888889999999999999999999999999999999998765 45667777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (581)
..++.++|.++...|++++|+.++++++.+.... .+...+.....+..++..+...+....+.. +..+...... ...
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 246 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCC
Confidence 8889999999999999999999999999986553 223344444566667777666555544443 3444443332 345
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
.++....++..+|.+|...|++++|..++++++++
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67888889999999999999999999999999864
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.9e-23 Score=196.69 Aligned_cols=285 Identities=16% Similarity=0.058 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
....+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|...++++++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 3456788999999999999999999999987 4556788999999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH----------HHH-HH-HHHHcCChHH
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR----------IDL-AE-LLHIVGRGQE 391 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------~~l-a~-~~~~~g~~~~ 391 (581)
.|....++..+|.++...|++++|+..+++++... +......... ..+ +. ++...|++++
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHH
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 34456788999999999999999999999998762 2222111110 112 44 5788899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (581)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (581)
|+.++++++... |....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|
T Consensus 157 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 157 CRTLLHAALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Confidence 999999998762 334568899999999999999999999999985 4555678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q 008016 472 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKK 547 (581)
Q Consensus 472 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 547 (581)
++++|+..++++++.. |....++..+|.++...|+++ +|+..+++++++.......... ....++..
T Consensus 221 ~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYD-LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 9999999999998753 334467899999999999999 9999999999876432111111 16788999
Q ss_pred HHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 548 VVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 548 la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
++.++...|++++|...+++++...++.-
T Consensus 292 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 292 FRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999998877653
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.7e-23 Score=195.64 Aligned_cols=279 Identities=11% Similarity=0.028 Sum_probs=229.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
++..|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++.... |
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~ 86 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P 86 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c
Confidence 678889999999999999999999986 67778899999999999999999999999988764 3
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-------------H-HH-HHHhcCCHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG-------------M-AK-VLGSIGRAKKAV 265 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~ 265 (581)
....++..+|.++...|++++|+..+++++..... . ...+.. + +. ++...|++++|+
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-----Y---EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-----T---TTC--------------------CCTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----c---HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 34567889999999999999999999999875321 1 112222 2 44 588899999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
..++++++. .|....++..+|.++...|++++|..+++++++. .|....++..+|.++...|++
T Consensus 159 ~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 159 TLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp HHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCH
Confidence 999999987 4456788999999999999999999999999986 344567889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----HPSFVTHLLNL 421 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~l 421 (581)
++|+..++++++. .++. ..++..+|.++...|++++|+.++++++.......+.. ......++..+
T Consensus 223 ~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 223 QEALDAYNRALDI-------NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-------CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence 9999999999986 2332 34668899999999999999999999998863321111 11156789999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 422 AASYSRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
|.++...|++++|...++++++...+..+
T Consensus 293 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 293 RMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999888766543
No 39
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.92 E-value=3.4e-21 Score=184.73 Aligned_cols=311 Identities=11% Similarity=0.000 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
...++..+|.++...|++++|+.++++++... ..++ .....++..+|.++...|++++|...+++++.+....
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 34567788999999999999999999998854 2222 3456688999999999999999999999999987763
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
++......++..+|.++...|++++|+.+++++++..+...+..++....++.++|.++...|++++|..++++++.+..
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 23334566788999999999999999999999999988764444567788899999999999999999999999999865
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
.. .++....++..+|.++...|++++|..++++++.+.... ..... .......++.++...|++++|..+++
T Consensus 167 ~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 167 SY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239 (373)
T ss_dssp TS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 42 122245678899999999999999999999999875432 11111 11122245566889999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL 519 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A 519 (581)
+++... ..........+..++.++...|++++|...+++++...... +..+....++..++.++...|+.+ +|
T Consensus 240 ~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A 312 (373)
T 1hz4_A 240 HTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-DA 312 (373)
T ss_dssp HSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-HH
T ss_pred hCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHH-HH
Confidence 887521 11112223356789999999999999999999999987653 223345568889999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q 008016 520 LELLKRVLRIQER 532 (581)
Q Consensus 520 ~~~~~~a~~~~~~ 532 (581)
...+++++.+...
T Consensus 313 ~~~l~~al~~~~~ 325 (373)
T 1hz4_A 313 QRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 40
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=3.3e-21 Score=184.80 Aligned_cols=313 Identities=11% Similarity=0.055 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240 (581)
Q Consensus 161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 240 (581)
...++..+|.++...|++++|...+++++.... ..+......++..+|.++...|++++|...+++++.+.+.. .+
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 88 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DV 88 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--Cc
Confidence 356677889999999999999999999887652 12223345678899999999999999999999999988764 23
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
......++..+|.++...|++++|+.+++++++......+..++....++.++|.++...|++++|..+++++++.....
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 34556778999999999999999999999999998876544457778889999999999999999999999999875432
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 400 (581)
.++....++..+|.++...|++++|..++++++.+.... +............++.++...|++++|..++++++
T Consensus 169 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 169 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 123355788899999999999999999999999886541 11111222222245566889999999999999876
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
... ..........+..+|.++...|++++|...+++++...... +..+....++..+|.++...|++++|...+
T Consensus 243 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 243 KPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 532 11112223356789999999999999999999999987653 222344457888999999999999999999
Q ss_pred HHHHHHHHH
Q 008016 481 LEALYIREI 489 (581)
Q Consensus 481 ~~a~~~~~~ 489 (581)
++++.+...
T Consensus 317 ~~al~~~~~ 325 (373)
T 1hz4_A 317 LDALKLANR 325 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998754
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-21 Score=176.17 Aligned_cols=252 Identities=14% Similarity=0.086 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
....+...|..+...|++++|+.+|+++++. . ..+.++..+|.++...|++++|+..+++++.......
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 4456889999999999999999999999987 3 4467899999999999999999999999999886655
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
++.+....++..+|.++...|++++|+.++++++.+. +. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 5556667889999999999999999999999999862 11 45677788999999999998875
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
.|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6778899999999999999999999999999986 34456789999999999999999999999999
Q ss_pred HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016 357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (581)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (581)
+. .|+. ..++..+|.++...|++++|+.++++++++..+.. ..|....++..++.
T Consensus 201 ~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EK-------DPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp HH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred Hh-------CHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 87 2333 45678999999999999999999999999876542 33444455555543
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.8e-21 Score=173.48 Aligned_cols=253 Identities=12% Similarity=0.034 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
..+..+..+|.++...|++++|+.+++++++.. ....++..+|.++...|++++|+..++++++..... .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 457789999999999999999999999999872 335788999999999999999999999999986543 2
Q ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
++.+....++..+|.++...|++++|+.++++++.+. +. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----------~~~~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----------ADILTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----------hHHHHHHhHHHHHHHHHHHHHHc
Confidence 2333447899999999999999999999999999862 22 34677788899999999998764
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (581)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (581)
.|....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++
T Consensus 135 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 135 --------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp --------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5777889999999999999999999999999985 355567899999999999999999999999
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008016 483 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 550 (581)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 550 (581)
+++.. |....++..+|.++...|+++ +|+..+++++++..... ..|....++..++.
T Consensus 199 al~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 199 AIEKD--------PNFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVN--NGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred HHHhC--------HHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence 98853 344578999999999999999 99999999999875543 23444555555544
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=2.7e-22 Score=183.36 Aligned_cols=251 Identities=9% Similarity=0.006 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (581)
..+...|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++. ++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~ 68 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-------VN 68 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-------SC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------cC
Confidence 45678899999999999999999999875 2334457889999999999999999999999873 23
Q ss_pred CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
++.....++..+|.++...|++++|+.++++++... |....++..+|.+|...|++++|+.++++++++
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 137 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--- 137 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence 344446678999999999999999999999999862 334468899999999999999999999999873
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---ChHHHHHHHH
Q 008016 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLK 524 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~~A~~~~~ 524 (581)
+|....++..+|......+++++|+..+++++++. | ....++..+|.++...|+ ++ +|+..++
T Consensus 138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p---~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~ 203 (272)
T 3u4t_A 138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----P---NIYIGYLWRARANAAQDPDTKQG-LAKPYYE 203 (272)
T ss_dssp -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T---TCHHHHHHHHHHHHHHSTTCSSC-TTHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----c---cchHHHHHHHHHHHHcCcchhhH-HHHHHHH
Confidence 56677889999955555669999999999998864 3 335778899999999998 88 8999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
+++++......+..+....++..+|.+|...|++++|+..|++++++.++....
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 999987554322223456889999999999999999999999999998765543
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=1e-21 Score=185.65 Aligned_cols=255 Identities=11% Similarity=-0.056 Sum_probs=214.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK 319 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 319 (581)
.|....++..+|.++...|++++|+..+++++.+ +|....+++.+|.++...|+ +++|+..|++++++
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--- 161 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--- 161 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence 4677889999999999999999999999999998 67788999999999999997 99999999999987
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (581)
+|....++.++|.++...|++++|+..|++++++ .|++ ..++.++|.++...|++++|+.+++++
T Consensus 162 -----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-------dP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 162 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAKN---YHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5667889999999999999999999999999997 3333 557799999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC--
Q 008016 400 LLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEA-----ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-- 471 (581)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 471 (581)
+.+ +|....+++++|.++.. .|..++| +.++++++.+ +|....++..++.++...|
T Consensus 227 l~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 227 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGG
T ss_pred HHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCcc
Confidence 987 35567799999999999 5555777 5889999985 5677789999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---------ChHHHHHHHHHH-HHHHHHhcCCCCHHH
Q 008016 472 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------DDTKLLELLKRV-LRIQEREFGSESEEV 541 (581)
Q Consensus 472 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~~A~~~~~~a-~~~~~~~~~~~~~~~ 541 (581)
++++|++.++++ + ..|....++..+|.+|...|+ .+ +|+.+|+++ ++ .+|..
T Consensus 291 ~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~-~A~~~~~~l~~~--------~DP~r 352 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN-KALELCEILAKE--------KDTIR 352 (382)
T ss_dssp GCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHHHHHT--------TCGGG
T ss_pred chHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHH--------hCchh
Confidence 688998877665 2 234455788999999998852 24 677676665 44 35777
Q ss_pred HHHHHHHHHHHHHc
Q 008016 542 MLTLKKVVSYLDKL 555 (581)
Q Consensus 542 ~~~~~~la~~~~~~ 555 (581)
...|..++..+..+
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888877654
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=4.1e-22 Score=182.09 Aligned_cols=262 Identities=13% Similarity=0.030 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
+..+...|.++...|++++|+..+++++... |....++..+|.++...|++++|+..+++++.. +.+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 3467889999999999999999999988764 222336788999999999999999999999872 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
.....++..+|.++...|++++|+.+++++++. .|....++..+|.+|...|++++|+.+++++++.
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 334677899999999999999999999999997 4555678999999999999999999999999864
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE 398 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 398 (581)
.|....++..+|......+++++|+..++++++. .|+. ...+..+|.++...|+ +++|+..+++
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-------KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 4566788899995555567999999999999987 2333 4566889999999999 9999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 008016 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469 (581)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 469 (581)
+++...............++..+|.+|...|++++|+.++++++++ +|....+...++.+...
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence 9998755422112335578999999999999999999999999986 45555566666655443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=8.8e-22 Score=186.02 Aligned_cols=255 Identities=11% Similarity=-0.025 Sum_probs=216.4
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHH
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESR 236 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 236 (581)
.|....++..+|.++...|++++|+..+++++.+. |....+++.+|.++...|+ +++|+..|++++.+.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--- 162 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--- 162 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---
Confidence 78889999999999999999999999999998875 5666789999999999997 999999999999863
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
|....++.++|.++...|++++|+..|++++++ +|....++.++|.++...|++++|+.+|++++++
T Consensus 163 -----P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 163 -----PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 334788999999999999999999999999998 6777899999999999999999999999999987
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--C
Q 008016 317 YTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEA-----VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--R 388 (581)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 388 (581)
+|....+++++|.++.. .|.+++| +.++++++.+ .|++ ..++.+++.++...| +
T Consensus 230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-------~P~~---~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTTCGGG
T ss_pred --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHccCccc
Confidence 56778899999999999 5665888 5889999987 3333 457789999999988 6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc--------C-HHHHHHHHHHH-HHHHHHhcCCCCcchHH
Q 008016 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--------N-FVEAERLLRIC-LDIMTKTVGPDDQSISF 458 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~ 458 (581)
+++|++.++++ + ..|....++..+|.+|..+| + +++|+.+|+++ ++ .+|....
T Consensus 292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~ 354 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKE 354 (382)
T ss_dssp CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHH
T ss_pred hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHH
Confidence 89998887664 1 23455678889999999885 2 58899999887 55 3677778
Q ss_pred HHHHHHHHHHHc
Q 008016 459 PMLHLGITLYHL 470 (581)
Q Consensus 459 ~~~~la~~~~~~ 470 (581)
.|..++..+..+
T Consensus 355 ~w~~~~~~l~~~ 366 (382)
T 2h6f_A 355 YWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776643
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.3e-21 Score=171.33 Aligned_cols=197 Identities=17% Similarity=0.119 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..++..+|.++...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 467889999999999999999999999986 6777889999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016 325 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR 393 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (581)
.|....++.++|.++... |++++|+..+++++++ .|+. ..++.++|.++...|++++|+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY---APLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHcCChHHHH
Confidence 456678899999999999 9999999999999997 3333 456689999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 008016 394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473 (581)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 473 (581)
..|++++++. ....++.++|.++...|++++|+..|++++++ +|....++..+|.++...|++
T Consensus 139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence 9999999872 23457889999999999999999999999985 566678899999999999999
Q ss_pred HHHHHHHHHHH
Q 008016 474 KEAEKLVLEAL 484 (581)
Q Consensus 474 ~~A~~~~~~a~ 484 (581)
++|+..++++-
T Consensus 202 ~~A~~~~~~~~ 212 (217)
T 2pl2_A 202 EEAARAAALEH 212 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.7e-21 Score=170.51 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
..+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 346789999999999999999999999874 3445778999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKE-----------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL 351 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 351 (581)
.|....++..+|.++... |++++|+..+++++++ +|....++.++|.++...|++++|+..
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 567788999999999999 9999999999999987 456678899999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016 352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431 (581)
Q Consensus 352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 431 (581)
|++++++. +. ..++.++|.++...|++++|+..|+++++. .|....++..+|.++...|++
T Consensus 141 ~~~al~~~--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 141 LKQALALE--------DT---PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHC--------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred HHHHHhcc--------cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence 99999972 22 446689999999999999999999999987 345557889999999999999
Q ss_pred HHHHHHHHHHH
Q 008016 432 VEAERLLRICL 442 (581)
Q Consensus 432 ~~A~~~~~~al 442 (581)
++|+..++++-
T Consensus 202 ~~A~~~~~~~~ 212 (217)
T 2pl2_A 202 EEAARAAALEH 212 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=6.7e-22 Score=193.26 Aligned_cols=351 Identities=13% Similarity=0.033 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHhhcCCC
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ 198 (581)
...+..+.+.|++++|+.+|+++.+. ..+.++..+|.+|...|+. ++|+.+|+++.+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 44677889999999999999998653 2345678899999999988 8999999987643
Q ss_pred cchHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
...+++.+|.++...| ++++|+.+|+++++. ++ ..++..+|.+|...+..+++...++....
T Consensus 68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 2345788999666665 889999999999872 22 23788899999988776655444444333
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC---CHHHHHH
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVE 350 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 350 (581)
.... ....+.+.||.+|...+.++++............ ..++. ++.+||.+|...| ++++|+.
T Consensus 135 a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 135 WQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 3221 2245788999999999988777766443333221 22333 7889999999999 9999999
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-H
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-Y 425 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~ 425 (581)
+|+++.+. ++.. ...++++|.+|... +++++|+.+|+++. +....++++||.+ +
T Consensus 201 ~~~~aa~~-------g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 201 QMEAGVSR-------GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLY 259 (452)
T ss_dssp HHHHHHHT-------TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHH
T ss_pred HHHHHHHC-------CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHH
Confidence 99999875 2222 33447889888665 78999999999875 2234578889998 4
Q ss_pred --HHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016 426 --SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-----RDKEAEKLVLEALYIREIAFGKDSLPV 498 (581)
Q Consensus 426 --~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (581)
...+++++|+.+|+++.+. ....++.+||.+|. .| ++++|+.+|+++. +.+
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~--- 317 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE--- 317 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---
T ss_pred hCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---
Confidence 5689999999999999862 24568889999988 55 9999999999885 233
Q ss_pred HHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHH
Q 008016 499 GEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSN 570 (581)
Q Consensus 499 ~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~ 570 (581)
..+...||.+|.. ..+++ +|+.+|+++.+ .++ ..+.+.||.+|.. ..++++|..+|+++.+
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQ-KALDHLLTAAR-------NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHH-HHHHHHHHHHT-------TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHh-------hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3778999988877 23666 89999988875 122 4567889999875 4588999999999876
Q ss_pred HH
Q 008016 571 LR 572 (581)
Q Consensus 571 l~ 572 (581)
.+
T Consensus 387 ~g 388 (452)
T 3e4b_A 387 QD 388 (452)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.5e-19 Score=165.38 Aligned_cols=263 Identities=14% Similarity=0.083 Sum_probs=206.3
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcCCCcchH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (581)
-.+..|+|..|+..++++. ...|.. ......++.+|...|++++|+..++. .+++ ...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~-------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~-~~~a~~ 69 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK-------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP-ELQAVR 69 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC-------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCCh-hHHHHH
Confidence 3567899999999887642 222443 34667789999999999999976643 1333 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
.++..+...|++++|++.+++.+.. ..+|....++..+|.++...|++++|+..+++ +...
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~ 130 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSL 130 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCH
Confidence 9999999999999999999988763 12466678899999999999999999999886 2345
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
.++..+|.++...|++++|+..++++++. .|+.... .....+..++...|++++|+..|++++..
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------- 195 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADK------- 195 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence 67889999999999999999999999886 3443211 11111223344558999999999999876
Q ss_pred CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKLVLEALYIRE 488 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~ 488 (581)
.|....+++++|.++...|++++|+..+++++.. +|....++.++|.++...|++.+ +..++++++++.
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~- 265 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH- 265 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 2345668999999999999999999999999985 56677789999999999999986 578899998764
Q ss_pred HHcCCCChhHH
Q 008016 489 IAFGKDSLPVG 499 (581)
Q Consensus 489 ~~~~~~~~~~~ 499 (581)
|++|...
T Consensus 266 ----P~~~~~~ 272 (291)
T 3mkr_A 266 ----RSHPFIK 272 (291)
T ss_dssp ----TTCHHHH
T ss_pred ----CCChHHH
Confidence 7777543
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.5e-19 Score=165.39 Aligned_cols=257 Identities=13% Similarity=0.063 Sum_probs=200.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
++..+..|+|.+|+..+++... .+|+. ......++.+|...|+++.|+..++. .+ +...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~----------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~-~~~~ 65 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP----------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SS-APEL 65 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC----------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TS-CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc----------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cC-ChhH
Confidence 5667889999999998877532 25555 45778889999999999999875543 12 3355
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.++..++..+...|++++|+..+++++.. ...|....++..+|.++...|++++|+..+++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------- 126 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------- 126 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------
Confidence 67888999999999999999999988752 11233466789999999999999999999876
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
|....++..+|.++..+|++++|+..++++++.. +++. .......+..++...|++++|+..|+++++.
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----- 195 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----- 195 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----
Confidence 2346688899999999999999999999998861 2221 1111111223444569999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH-HHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-AERLLRICL 442 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al 442 (581)
.|+. ..+++++|.++...|++++|+..+++++.. .|....++.++|.++...|++++ +..++++++
T Consensus 196 --~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 196 --CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp --SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2333 456789999999999999999999999987 34556679999999999999976 578999998
Q ss_pred HH
Q 008016 443 DI 444 (581)
Q Consensus 443 ~~ 444 (581)
++
T Consensus 263 ~~ 264 (291)
T 3mkr_A 263 DA 264 (291)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.2e-18 Score=171.89 Aligned_cols=384 Identities=12% Similarity=0.046 Sum_probs=266.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+...+. +.+.|++++|...|+++++. .|.....+..++..+...|++++|..+|++++... |
T Consensus 16 w~~l~~-~~~~~~~~~a~~~~e~al~~----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-------p 77 (530)
T 2ooe_A 16 WSILIR-EAQNQPIDKARKTYERLVAQ----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-------L 77 (530)
T ss_dssp HHHHHH-HHHSSCHHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-------C
T ss_pred HHHHHH-HHHhCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------C
Confidence 444554 36789999999999999976 78888999999999999999999999999987654 3
Q ss_pred hHHHHHHHHHH-HHHhccCHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh---------cCCHHHHHH
Q 008016 201 LLDAILLHMGS-MYSTLENYEKSML----VYQRVINVLESRYGKTSILLVTSLLGMAKVLGS---------IGRAKKAVE 266 (581)
Q Consensus 201 ~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~ 266 (581)
. ...|...+. .....|++++|.. .|++++.. .+. ++....+|...+..... .|++++|..
T Consensus 78 ~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 78 H-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp C-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 2 234555554 4456788888876 55555543 221 22224455555655544 688899999
Q ss_pred HHHHHHHHHHH-----------------------------------------------hcCC----CCh-------hhHH
Q 008016 267 IYHRVITILEL-----------------------------------------------NRGT----ESA-------DLVL 288 (581)
Q Consensus 267 ~~~~al~~~~~-----------------------------------------------~~~~----~~~-------~~~~ 288 (581)
+|+++++.-.. .+.. -.| ....
T Consensus 152 ~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 152 VYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 99888752000 0000 000 0001
Q ss_pred HHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-------CCCHH-------
Q 008016 289 PLFSLGSLFIK----EGKA----VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-------NGNAE------- 346 (581)
Q Consensus 289 ~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~------- 346 (581)
.+......... .++. ..+...|++++.. .|....+|..+|..+.. .|+++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 11111111000 0111 2455566666654 23446778888888876 79987
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426 (581)
Q Consensus 347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 426 (581)
+|...++++++. ..|+. ..++..++.++...|++++|...|++++.+ .+..+ ..++..++.++.
T Consensus 304 ~A~~~~~~Al~~------~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~ 367 (530)
T 2ooe_A 304 EAANIYERAIST------LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFAR 367 (530)
T ss_dssp HHHHHHHHHTTT------TCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHH
Confidence 788888888752 12333 456788999999999999999999999875 22222 247888999999
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 505 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (581)
..|++++|+..|+++++. .|.....+...+.+ +...|++++|...|+++++.. |+++ ..+..+
T Consensus 368 ~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~---~~~~~~ 431 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP---EYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH---HHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH---HHHHHH
Confidence 999999999999999873 23333344444444 346899999999999999875 4444 678899
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 506 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 506 a~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
+.++...|+.+ +|..+|++++.. .+.+|. ....+...+......|+.+.+..+++++++..++
T Consensus 432 ~~~~~~~g~~~-~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 432 IDYLSHLNEDN-NTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHTTTTCHH-HHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhCCCHh-hHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999 999999999873 223342 3446767788888899999999999999999875
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=1.2e-18 Score=159.06 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=196.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI 359 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 359 (581)
|..+.++..+|.++...|++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 345678899999999999999999999999871 224678899999999 99999999999999875
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNF 431 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 431 (581)
+ . ..++.++|.+|.. .+++++|+.++++++.. + ...++..+|.+|.. .+++
T Consensus 72 ------~--~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 72 ------N--Y---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp ------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred ------C--C---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCH
Confidence 1 1 4567899999999 99999999999999874 1 24678999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 008016 432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS 507 (581)
Q Consensus 432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 507 (581)
++|+.+|+++++. . ...++..+|.++.. .+++++|+.+|+++++. ++ ..++..+|.
T Consensus 131 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~ 190 (273)
T 1ouv_A 131 KKAVEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN 190 (273)
T ss_dssp HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence 9999999999883 1 24578899999999 99999999999999863 22 367899999
Q ss_pred HHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHHHHh
Q 008016 508 IQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 508 ~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
++.. .++++ +|+.+++++++. ++ ..++..+|.+|.. .|++++|+.+|++++++.+...
T Consensus 191 ~~~~g~~~~~~~~-~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 191 MYHHGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCCCccHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 9999 99999 999999999873 22 4678899999999 9999999999999999876543
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=1.2e-18 Score=158.91 Aligned_cols=224 Identities=15% Similarity=0.176 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 276 (581)
....+++.+|.++...|++++|+.+|+++++ +++ ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 3445788999999999999999999999987 122 4678999999999 99999999999999875
Q ss_pred HhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEA 348 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 348 (581)
+ ...++..+|.+|.. .+++++|+.+|+++++. ....++.++|.+|.. .+++++|
T Consensus 72 -----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCcccCHHHH
Confidence 1 36788999999999 99999999999999874 235788999999999 9999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (581)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (581)
+.+++++++. + + ..++.++|.+|.. .+++++|+.+++++++. .+ ..++..+|.+
T Consensus 134 ~~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~ 191 (273)
T 1ouv_A 134 VEYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred HHHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHH
Confidence 9999999874 1 1 3456889999999 99999999999999864 12 3578899999
Q ss_pred HHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 008016 425 YSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI 486 (581)
Q Consensus 425 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~ 486 (581)
|.. .+++++|+.+++++++. . + ..++..+|.+|.. .+++++|+.+|+++++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999 99999999999999883 1 2 4678999999999 99999999999999885
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=8.3e-19 Score=161.20 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=173.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD 285 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 285 (581)
+...|.+|...|++++|+..|++++.+.... .+.+..+.++.++|.+|...|++++|+.+|++++++.... ++...
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~ 115 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRR 115 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHH
Confidence 3444777889999999999999999998764 3445668899999999999999999999999999997663 23445
Q ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 286 LVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 286 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
.+.++.++|.+|... |++++|+.+|++++++.+.. .+......++.++|.++...|++++|+.+|++++++...
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--- 190 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG--- 190 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---
Confidence 577899999999996 99999999999999987653 222334678999999999999999999999999987322
Q ss_pred CCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HccCHHHHHHHHHHH
Q 008016 365 MSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLLRIC 441 (581)
Q Consensus 365 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a 441 (581)
.+.. ......+.++|.++...|++++|+.++++++.+..... .......+..++..+. ..+++++|+..|+++
T Consensus 191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 1111 12344678999999999999999999999987653321 1112234556666664 456788888888776
Q ss_pred HH
Q 008016 442 LD 443 (581)
Q Consensus 442 l~ 443 (581)
+.
T Consensus 267 ~~ 268 (292)
T 1qqe_A 267 MR 268 (292)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 56
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.83 E-value=2.2e-18 Score=159.58 Aligned_cols=248 Identities=10% Similarity=0.052 Sum_probs=194.6
Q ss_pred hccCHHHHHHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 008016 215 TLENYEKSMLVYQRVINVLES-RY--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF 291 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 291 (581)
..|++++|..+++++.+.... .+ +++.......+...|.+|...|++++|+..|.+++++.... .+......++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 467888899998888876543 12 23444566677778899999999999999999999998764 34456678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 371 (581)
++|.+|...|++++|+.+|++++++.... .+....+.++.++|.+|.. |++++|+.+|++++++.+.. .+...
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~ 153 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ 153 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence 99999999999999999999999998654 3334567889999999999 99999999999999998762 33445
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP 451 (581)
Q Consensus 372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (581)
...++.++|.+|..+|++++|+.+|++++.+.... ...+.....+..+|.++...|++++|+.+|++++ +....
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~--- 227 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF--- 227 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence 56788999999999999999999999999998765 2234455688899999999999999999999998 42111
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016 452 DDQSISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 452 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
........+..++..+ ..|+.+.+..
T Consensus 228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1122233455666655 5677665544
No 57
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=2.2e-18 Score=158.42 Aligned_cols=222 Identities=13% Similarity=0.030 Sum_probs=170.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
|.+|...|++++|+..|++++++.... .+.+..+.++.++|.+|...|++++|+.+|++++++.... ++....+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~ 119 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF 119 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 556788999999999999999998764 3445668899999999999999999999999999998764 334446788
Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016 332 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 332 ~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
+.++|.+|... |++++|+.+|++++++.+.. .+......++.++|.++..+|++++|+.+|++++.+.... +..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 194 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLS 194 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-Ccc
Confidence 99999999996 99999999999999997752 2334446678999999999999999999999999874221 000
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALY 485 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~ 485 (581)
.......+.++|.++...|++++|+..|++++++..... .......+..++..+. ..+++++|+..|++++.
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 113445788999999999999999999999987532211 1112234556666665 45678888888776643
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=7.6e-19 Score=160.62 Aligned_cols=256 Identities=11% Similarity=0.043 Sum_probs=197.6
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (581)
.....|++++|+..+++++... ..++|....++..+|.++...|++++|+..|++++... ++ ...++..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~ 82 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PD---MPEVFNY 82 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC---CHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CC---cHHHHHH
Confidence 3445688999999999987753 23456788899999999999999999999999999862 22 3567899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.. ++++ .
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~ 146 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---F 146 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---H
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---H
Confidence 999999999999999999999997 44556889999999999999999999999999862 2222 2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 410 (581)
....++ ++...|++++|+..+++++... ++.... ..++.++...++.++|+..+++++......
T Consensus 147 ~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 210 (275)
T 1xnf_A 147 RSLWLY-LAEQKLDEKQAKEVLKQHFEKS-------DKEQWG----WNIVEFYLGNISEQTLMERLKADATDNTSL---- 210 (275)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHS-------CCCSTH----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----
T ss_pred HHHHHH-HHHHhcCHHHHHHHHHHHHhcC-------CcchHH----HHHHHHHHHhcCHHHHHHHHHHHhcccccc----
Confidence 222233 3466699999999999988862 222221 347778888899999999999887654332
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (581)
.+....++..+|.++...|++++|+.++++++.+ .|... ...+.++...|++++|++.+
T Consensus 211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 2344678999999999999999999999999874 23222 23366788889999988776
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=2e-17 Score=166.07 Aligned_cols=350 Identities=10% Similarity=0.040 Sum_probs=242.7
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
+|....++..++.. ...|++++|...|++++... |....+|..++..+...|++++|...|++++...
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---- 76 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---- 76 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Confidence 77788888888884 77899999999999987764 5566778999999999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHH-HHHhcCCHHHHHH----HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------cCCH
Q 008016 238 GKTSILLVTSLLGMAK-VLGSIGRAKKAVE----IYHRVITILELNRGTESADLVLPLFSLGSLFIK---------EGKA 303 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~ 303 (581)
+ + ...|..++. .....|++++|.+ .|++++... + .++.....+...+..... .|++
T Consensus 77 -p-~---~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~----g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 77 -L-H---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI----G-MEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp -C-C---HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT----T-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred -C-C---hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC----C-CCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 2 2 335666664 4445688887776 566665542 2 233345566666665554 6788
Q ss_pred HHHHHHHHHHHHHH--------H---------------------------------------HHcCC----CCch-----
Q 008016 304 VDAESVFSRILKIY--------T---------------------------------------KVYGE----NDGR----- 327 (581)
Q Consensus 304 ~~A~~~~~~al~~~--------~---------------------------------------~~~~~----~~~~----- 327 (581)
++|..+|++++..- . ..+.. -.|.
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 88888888877520 0 00000 0000
Q ss_pred --HHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH-------cCChH
Q 008016 328 --VGMAMCSLAHAKCAN----GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-------VGRGQ 390 (581)
Q Consensus 328 --~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~ 390 (581)
....+.......... ++. .+++..|++++... |.. ..++..+|..+.. .|+++
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-------p~~---~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHH---PDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhchhhhhccchh
Confidence 011111111111110 111 25556666666652 222 4567888888876 79988
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHH
Q 008016 391 -------EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLH 462 (581)
Q Consensus 391 -------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~ 462 (581)
+|+..+++++.. ..|.....+..+|.++...|++++|...|++++++ .|.. ..++..
T Consensus 297 ~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~ 361 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHH
Confidence 777777777641 13555678899999999999999999999999984 2322 357889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI-QTRLGEDDTKLLELLKRVLRIQEREFGSESEEV 541 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 541 (581)
++.++...|++++|...|+++++.. +.. ...+...+.+ +...|+.+ +|...|+++++.. |+.
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-----~~~---~~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~--------p~~ 424 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-----RTR---HHVYVTAALMEYYCSKDKS-VAFKIFELGLKKY--------GDI 424 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-----TCC---THHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH--------TTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-----CCc---hHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHC--------CCC
Confidence 9999999999999999999998632 222 2333444444 34689998 9999999999864 334
Q ss_pred HHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016 542 MLTLKKVVSYLDKLGRKEEKFPLKKRLSNL 571 (581)
Q Consensus 542 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~l 571 (581)
..++..++.++...|+.++|..+|++++..
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 567889999999999999999999999875
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=5.6e-19 Score=158.19 Aligned_cols=219 Identities=15% Similarity=0.201 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
.+..++.+|..+...|++++|+.++++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------- 86 (243)
T ss_dssp --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence 4556888999999999999999999999873 2333678899999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
.|....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+++++++..
T Consensus 87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 155 (243)
T 2q7f_A 87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-- 155 (243)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--
T ss_pred -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 4556788999999999999999999999999986 23345678899999999999999999999999872
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
++. ..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+++++
T Consensus 156 -----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 156 -----END---TEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp -----TTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -----Ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 222 3466889999999999999999999998762 334567899999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 008016 442 LDIMTKTVGPDDQSISFPMLHLGITLYHL 470 (581)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~ 470 (581)
+++ .|+...++..++.+....
T Consensus 220 ~~~--------~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 220 IDI--------QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHH--------CTTCHHHHHHHTC-----
T ss_pred Hcc--------CcchHHHHHHHHHHHhhc
Confidence 985 344555666655544433
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=5.8e-19 Score=158.12 Aligned_cols=217 Identities=14% Similarity=0.169 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
..+..+..+|..+...|++++|+.+++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 35677889999999999999999999999875 4556788999999999999999999999999986
Q ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.|....++..+|.++...|++++|+.+++++++.. +.. ..++..+|.++...|++++|+.++++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34456788999999999999999999999999872 333 345688999999999999999999999876
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482 (581)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (581)
. |....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|..++++
T Consensus 155 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 155 N--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp C--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred C--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 333457889999999999999999999999885 345567889999999999999999999999
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHH
Q 008016 483 ALYIREIAFGKDSLPVGEALDCLVSIQ 509 (581)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~la~~~ 509 (581)
++++. |+++ .++..++.+.
T Consensus 219 ~~~~~-----p~~~---~~~~~~~~l~ 237 (243)
T 2q7f_A 219 AIDIQ-----PDHM---LALHAKKLLG 237 (243)
T ss_dssp HHHHC-----TTCH---HHHHHHTC--
T ss_pred HHccC-----cchH---HHHHHHHHHH
Confidence 98854 4444 4444444443
No 62
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.82 E-value=6.6e-18 Score=156.39 Aligned_cols=247 Identities=10% Similarity=0.067 Sum_probs=192.4
Q ss_pred HcCChHHHHHHHHHHHHHHhh--c--CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008016 174 YIGDLKFVQSLLDMMSGIVDS--L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249 (581)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 249 (581)
..|++++|..+++++.+.... + ..+.......+...|.+|...|++++|+..|.+++.+.... .+....+.++.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 356778888888887776542 1 23334445566777899999999999999999999998765 34456788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
++|.+|...|++++|+.+|++++++.... .+......++.++|.+|.. |++++|+.+|++++++.+.. .+.....
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence 99999999999999999999999997653 2334567889999999999 99999999999999998763 2334467
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
.++.++|.+|...|++++|+.+|++++.+..+. +........+.++|.++...|++++|+.++++++ +....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~--- 227 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF--- 227 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence 889999999999999999999999999998763 2344455577889999999999999999999998 53221
Q ss_pred CChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 410 EHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
........+..++..+ ..|+.+....
T Consensus 228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1223344556666655 5677655544
No 63
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=7.1e-18 Score=151.90 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
...++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|...++++++.
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------- 100 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------- 100 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence 4888999999999999999999999999987 4555788999999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
.|....++..+|.++...|++++|+.++++++.. +..+....++..+|.++...|++++|+.++++++...
T Consensus 101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2344678899999999999999999999998761 1233345677899999999999999999999998762
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
|....++..+|.++...|++++|+.+++++++. .|.....+..++.++...|++++|..+++++
T Consensus 172 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 172 --------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp --------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333567889999999999999999999998773 4555677889999999999999999999999
Q ss_pred HHHH
Q 008016 484 LYIR 487 (581)
Q Consensus 484 ~~~~ 487 (581)
++..
T Consensus 236 ~~~~ 239 (252)
T 2ho1_A 236 KRLY 239 (252)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8754
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=9.7e-19 Score=172.04 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=180.5
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016 185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263 (581)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 263 (581)
+++++...+......+....+++.+|.++...|++ ++|+.+|++++++. |....++..+|.+|...|++++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHH
Confidence 33333333333344566677899999999999999 99999999999862 3346789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 334 (581)
|+.+|++++++ .|. ..++..+|.++... |++++|+..|++++++ .|....++.+
T Consensus 156 A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 218 (474)
T 4abn_A 156 AHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYI 218 (474)
T ss_dssp HHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence 99999999987 344 58899999999999 9999999999999987 4556788999
Q ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016 335 LAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 335 la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (581)
+|.+|... |++++|+..|++++++. |..+....++.++|.+|...|++++|+..|++++.+
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 287 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---- 287 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 99999999 99999999999999972 211134667899999999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
.|....++..++.++...|++++|+..+.+.
T Consensus 288 ----~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 288 ----DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2445578899999999999999998866543
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=1.2e-18 Score=159.23 Aligned_cols=258 Identities=14% Similarity=0.027 Sum_probs=197.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016 210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP 289 (581)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 289 (581)
+......|++++|+..++++++.. ..+++....++..+|.++...|++++|+..++++++. .|....+
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~ 79 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV 79 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence 334456689999999999998741 1234677899999999999999999999999999997 4556788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (581)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (581)
+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++. .|+.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~ 144 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPND 144 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCC
Confidence 999999999999999999999999986 3344578899999999999999999999999986 3344
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
... .....++...|++++|+..+++++... +... ....++.++...++.++|+..+++++......
T Consensus 145 ~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~- 210 (275)
T 1xnf_A 145 PFR----SLWLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQ----WGWNIVEFYLGNISEQTLMERLKADATDNTSL- 210 (275)
T ss_dssp HHH----HHHHHHHHHHHCHHHHHHHHHHHHHHS-----CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred hHH----HHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence 322 122234467799999999999988753 2222 12347778888999999999999887643221
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~ 523 (581)
.+....++..+|.++...|++++|..++++++.+. |++. ...+.++...|+++ +|++.+
T Consensus 211 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~------~~~~~~~~~l~~~~-~a~~~~ 269 (275)
T 1xnf_A 211 ---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VHNF------VEHRYALLELSLLG-QDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CTTC------HHHHHHHHHHHHHH-HC----
T ss_pred ---cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----chhH------HHHHHHHHHHHHHH-hhHHHH
Confidence 23346788999999999999999999999998743 3332 23356666777777 776665
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=1.2e-17 Score=147.38 Aligned_cols=212 Identities=11% Similarity=-0.004 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
.|....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 4566788999999999999999999999999987 4455778999999999999999999999999986
Q ss_pred cCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (581)
.|....++..+|.++... |++++|+.+++++++. +..+....++..+|.++...|++++|+.+++++
T Consensus 72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD--------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS--------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344467889999999999 9999999999999871 223333557789999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHHHHcCChHHHHH
Q 008016 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
+... |....++..+|.++...|++++|+.++++++.. .| .....+..++.++...|++++|..
T Consensus 140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 8762 333567889999999999999999999999885 23 444567788889999999999999
Q ss_pred HHHHHHHHHHHHcCCCChh
Q 008016 479 LVLEALYIREIAFGKDSLP 497 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~~ 497 (581)
+++.+.... |+++.
T Consensus 204 ~~~~~~~~~-----p~~~~ 217 (225)
T 2vq2_A 204 YEAQLQANF-----PYSEE 217 (225)
T ss_dssp HHHHHHHHC-----TTCHH
T ss_pred HHHHHHHhC-----CCCHH
Confidence 999887643 55553
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=1.7e-18 Score=170.35 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Q 008016 223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG 301 (581)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 301 (581)
...+++++........ ..+..+.++..+|.++...|++ ++|+.+|+++++. .|....++..+|.+|...|
T Consensus 81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Confidence 3334444444433322 2334578899999999999999 9999999999998 5667889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016 302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDSIM 372 (581)
Q Consensus 302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 372 (581)
++++|+.+|++++++ .|. ..++.++|.++... |++++|+..+++++++ .|+.
T Consensus 152 ~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~--- 212 (474)
T 4abn_A 152 DVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD--- 212 (474)
T ss_dssp CHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC---
T ss_pred CHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC---
Confidence 999999999999975 344 48899999999999 9999999999999997 2333
Q ss_pred HHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 373 ENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 373 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
..++.++|.+|... |++++|+..|++++.+. +..+....++.++|.+|...|++++|+..|++++++
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999 99999999999999872 111266789999999999999999999999999986
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
.|....++..++.++...|++++|++.+.+.
T Consensus 288 --------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 288 --------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4666778999999999999999998876543
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=1.2e-18 Score=170.29 Aligned_cols=354 Identities=11% Similarity=0.005 Sum_probs=234.8
Q ss_pred HHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHH
Q 008016 121 LFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG-----DLKFVQSLLDMMSGIV 192 (581)
Q Consensus 121 l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~ 192 (581)
++.++..+...|++ ++|+.+|+++++. .+.+++.+|.++...| ++++|+.+|+++...
T Consensus 38 ~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~- 103 (452)
T 3e4b_A 38 QVGLADIQVGTRDPAQIKQAEATYRAAADT-------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN- 103 (452)
T ss_dssp GGTCC-----------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-
Confidence 44455566667777 9999999998742 4567889999776665 788999999998763
Q ss_pred hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272 (581)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 272 (581)
+++. +++.+|.+|...+...++...++........ ....+...+|.+|...+.++++........
T Consensus 104 -----g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 104 -----GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp -----TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred -----CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 2222 5788999999887766554444443333221 124678899999999998877776644443
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC----CCH
Q 008016 273 TILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----GNA 345 (581)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~ 345 (581)
.... ..+|. +++.||.+|...| ++++|+.+|+++.+. .+..+..+.++|.+|... +++
T Consensus 169 ~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 169 KAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 3321 12333 8899999999999 999999999999874 234455668899999765 799
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016 346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-L--HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422 (581)
Q Consensus 346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 422 (581)
++|+.+|+++. .. + ..+++++|.+ + ...+++++|+.+|+++.+. ....++++||
T Consensus 234 ~~A~~~~~~aa---~g-------~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg 290 (452)
T 3e4b_A 234 KTAQALLEKIA---PG-------Y---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHHG---GG-------S---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred HHHHHHHHHHc---CC-------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHH
Confidence 99999999986 21 1 3456889998 4 4689999999999998753 1345888999
Q ss_pred HHHHHcc-----CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCC
Q 008016 423 ASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK 493 (581)
Q Consensus 423 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~ 493 (581)
.+|. .| ++++|+.+|+++. +....++++||.+|.. ..++++|..+|+++.+ .
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------~ 351 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-------N 351 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-------T
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-------h
Confidence 9998 56 9999999999885 2334688999998887 4499999999999876 2
Q ss_pred CChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--cCChhhhHHHHHH
Q 008016 494 DSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKR 567 (581)
Q Consensus 494 ~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~ 567 (581)
.++ .+...||.+|.. ..+.. +|..+|+++.+ .+++. +...++.+... .++..+|....++
T Consensus 352 g~~---~A~~~Lg~~y~~G~g~~~d~~-~A~~~~~~A~~-------~g~~~---a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 352 GQN---SADFAIAQLFSQGKGTKPDPL-NAYVFSQLAKA-------QDTPE---ANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TCT---THHHHHHHHHHSCTTBCCCHH-HHHHHHHHHHT-------TCCHH---HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChH---HHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHH-------CCCHH---HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333 568899999975 34566 89999988876 23443 33344444322 3455667776666
Q ss_pred HHHHHHH
Q 008016 568 LSNLRMK 574 (581)
Q Consensus 568 a~~l~~~ 574 (581)
.......
T Consensus 418 ~~~~~~~ 424 (452)
T 3e4b_A 418 ELAARGT 424 (452)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 6555443
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=5.8e-18 Score=144.22 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
...++.++|.+|..+|++++|+..|++++++ +|....++..+|.+|...|++++|+..+.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4678999999999999999999999999987 4566788999999999999999999999999886
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (581)
.++. ..++..+|.++...++++.|...+.+++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 69 ~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~- 136 (184)
T 3vtx_A 69 DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI- 136 (184)
T ss_dssp CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence 2333 345678999999999999999999999876 2444567889999999999999999999999985
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|....++..+|.+|..+|++++|+..|++++++.
T Consensus 137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 56777899999999999999999999999999853
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=1.7e-17 Score=149.39 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
....+...|..+...|++++|+..|+++++. .|....++..+|.++...|++++|+..++++....
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD---- 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 3566889999999999999999999999987 66678899999999999999999999999988764
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
|....++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|++++|+.+++++++.
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 170 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-- 170 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 33356788999999999999999999999876 1234556788999999999999999999999999987
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 356 (581)
.|....++..+|.++...|++++|..+++++++. .|.....+..++.++...|++++|..++++++
T Consensus 171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445778899999999999999999999998764 34455678899999999999999999999998
Q ss_pred HH
Q 008016 357 RV 358 (581)
Q Consensus 357 ~~ 358 (581)
+.
T Consensus 237 ~~ 238 (252)
T 2ho1_A 237 RL 238 (252)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=6.8e-18 Score=143.82 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..++.++|.+|...|++++|+..|++++++ +|....++..+|.+|...|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 678999999999999999999999999998 6677889999999999999999999999999876
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
.+....++..+|.++...++++.|...+.+++.. .|+. ..++..+|.++...|++++|+..|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-- 136 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-- 136 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence 3455677889999999999999999999999987 2333 345688999999999999999999999987
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
+|....++.++|.+|..+|++++|+..|++++++
T Consensus 137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3555678999999999999999999999999984
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=2.5e-18 Score=175.34 Aligned_cols=175 Identities=19% Similarity=0.184 Sum_probs=157.8
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
..|..+.++++||.+|..+|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46788999999999999999999999999999987 5667889999999999999999999999999997
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
.|+. ..++.++|.++..+|++++|++.|++++++ .|....++.++|.+|..+|++++|+..|+++
T Consensus 73 ----~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 73 ----SPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp ----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2333 567899999999999999999999999987 3556778999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016 442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (581)
+++ +|+...++.++|.++...|++++|.+.+++++++....
T Consensus 138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 996 57778899999999999999999999999999987654
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=6.9e-17 Score=142.58 Aligned_cols=206 Identities=12% Similarity=0.040 Sum_probs=175.9
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.|....++..+|.++...|++++|+.++++++... ++ ...++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-----PK---NELAWLVRAEIYQYLKVNDKAQESFRQALSI---- 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence 46677889999999999999999999999999852 22 3568889999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
.|....++..+|.++... |++++|+..++++++ .+..+....++..+|.++...|++++|+.+++++++
T Consensus 72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445577889999999999 999999999999986 134667788899999999999999999999999988
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK-EHPSFVTHLLNLAASYSRSKNFVEAER 436 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (581)
. .++. ..++..+|.++...|++++|+.++++++... + .. ...+..++.++...|+.++|..
T Consensus 142 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 142 A-------QPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQ---ADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp H-------STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred h-------CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCC---HHHHHHHHHHHHhcCcHHHHHH
Confidence 6 2332 3466889999999999999999999998864 2 22 3456778889999999999999
Q ss_pred HHHHHHHH
Q 008016 437 LLRICLDI 444 (581)
Q Consensus 437 ~~~~al~~ 444 (581)
+++.+...
T Consensus 204 ~~~~~~~~ 211 (225)
T 2vq2_A 204 YEAQLQAN 211 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=2.9e-18 Score=174.86 Aligned_cols=175 Identities=21% Similarity=0.284 Sum_probs=157.3
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
..|..+.+++++|.+|..+|++++|+.+|++++++. |....++.++|.+|...|++++|+..|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 458889999999999999999999999999999872 334788999999999999999999999999998
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
+|....++.++|.++..+|++++|++.|++++++ +|....++.++|.+|...|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777899999999999999999999999999987 566788999999999999999999999999999
Q ss_pred HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016 358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406 (581)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 406 (581)
+ .|+. ..++.++|.++...|++++|++.+++++++....
T Consensus 140 l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 140 L-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp H-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred h-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 7 3443 4567999999999999999999999999987554
No 75
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.80 E-value=3.2e-18 Score=165.81 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=145.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (581)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (581)
..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.+..+|++||.++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 500 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 500 ~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
.++.+||.+|..+|+++ +|+.++++|+++.+..+|++||.+......++.++..+|++++|...|+++.+-.
T Consensus 394 ~~l~nLa~~~~~~G~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIE-VGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999997654
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=8.1e-18 Score=152.23 Aligned_cols=212 Identities=13% Similarity=0.057 Sum_probs=181.2
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
.+.....+..+|..+...|++++|+..|+++++. .|+++....++..+|.++...|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-
Confidence 3455678899999999999999999999999875 45666667788999999999999999999999999873
Q ss_pred HhcCCCChHHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------------HH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--------------LH 462 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~ 462 (581)
++++....++..+|.++.. .|++++|+..|++++.. .|+++....+. ..
T Consensus 83 ----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 83 ----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp ----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999999 99999999999999985 34455555454 88
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHHHH
Q 008016 463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~~A~~~~~~a~~~~~~ 532 (581)
+|.+|...|++++|+..|+++++.. |+++....++..+|.++... |+++ +|+..|+++++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~-~A~~~~~~~~~~~-- 225 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYR-RAVELYERLLQIF-- 225 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHHC--
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHH-HHHHHHHHHHHHC--
Confidence 9999999999999999999999865 66666788999999999987 7778 9999999998853
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCChhhhHHH
Q 008016 533 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL 564 (581)
Q Consensus 533 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 564 (581)
|+++....+...++.++...|+++++..+
T Consensus 226 ---p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 226 ---PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp ---TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 66778888899999999999998877654
No 77
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.78 E-value=6.8e-18 Score=163.49 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=145.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 457 (581)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 457 (581)
..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~ 530 (581)
.++.+||.+|..+|++++|+.++++|+++.+..+|++||.+......++.++..++.+. +|...|.++.+.+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~-~ae~~~~~~~~~~ 465 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR-QNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999987644
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=2.4e-17 Score=149.07 Aligned_cols=210 Identities=12% Similarity=0.090 Sum_probs=177.6
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.+..+..++.+|..++..|++++|+..|++++... ++++....+++.+|.++...|++++|+..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY---- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence 56677899999999999999999999999987764 5556667889999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH--------------HHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGS--------IGRAKKAVEIYHRVITILELNRGTESADLVLPL--------------FSLGS 295 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~ 295 (581)
++++....+++.+|.++.. .|++++|+..|+++++.. ++++....+. ..+|.
T Consensus 83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677889999999999 999999999999999873 3344444444 88999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhhccC
Q 008016 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----------GNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
+|...|++++|+..|+++++.. ++++....++..+|.+|... |++++|+..|+++++.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~------- 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI------- 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-------
Confidence 9999999999999999999863 45566788999999999977 9999999999999986
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGR 393 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~ 393 (581)
.|+++....+...++.++...++++++.
T Consensus 225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4667777777788888888877776544
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=8.9e-16 Score=159.48 Aligned_cols=260 Identities=17% Similarity=0.172 Sum_probs=130.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
.-..++.+...|.+.+|++++++++-. +..-.++....+.++.+..+. +..+..++..+....
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~-------~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--------- 1050 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD-------NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--------- 1050 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC-------CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------
Confidence 345667888999999999999998721 110112222323343333333 334444443332110
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
. ...+|.++...|.+++|...|+++.... . .+...+...|++++|.++++++
T Consensus 1051 d----~~eIA~Iai~lglyEEAf~IYkKa~~~~---------~------A~~VLie~i~nldrAiE~Aerv--------- 1102 (1630)
T 1xi4_A 1051 D----APDIANIAISNELFEEAFAIFRKFDVNT---------S------AVQVLIEHIGNLDRAYEFAERC--------- 1102 (1630)
T ss_pred c----HHHHHHHHHhCCCHHHHHHHHHHcCCHH---------H------HHHHHHHHHhhHHHHHHHHHhc---------
Confidence 0 1235666667777777777776652110 0 0111222445555555555432
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
....+|..+|..+...|++++|+..|.++ .....+..+|.++.+.|++++|++++..+.+..+
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence 11345556666666666666666666543 1234455566666666666666666666555421
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (581)
. +.. -..+|.+|.+.+++++...+. . .+.. ..+..+|..+...|++++|..+|.+
T Consensus 1166 e-------~~I----dt~LafaYAKl~rleele~fI-~------------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1166 E-------SYV----ETELIFALAKTNRLAELEEFI-N------------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred c-------ccc----cHHHHHHHHhhcCHHHHHHHH-h------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 1 000 012555555555555322211 0 0111 1333456666666666666666555
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
+ ..|..++.++.+.|++++|++.++++
T Consensus 1221 A----------------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1221 V----------------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred h----------------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 3 13445555566666666666555555
No 80
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.7e-16 Score=160.40 Aligned_cols=325 Identities=12% Similarity=0.008 Sum_probs=226.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
.|..+...|.+++|..+|+++-. .... +...+...|++++|.++++++ ...
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----------~~~A------~~VLie~i~nldrAiE~Aerv------------n~p 1105 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----------NTSA------VQVLIEHIGNLDRAYEFAERC------------NEP 1105 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----------HHHH------HHHHHHHHhhHHHHHHHHHhc------------CCH
Confidence 46777888888888888888631 1111 122233677888888887753 224
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.+|..+|.++...|++++|+..|.++ + ....+..+|.++...|++++|+++|..+.+..+.
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA----------d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------ 1166 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA----------D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------ 1166 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc----------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------
Confidence 56888999999999999999999775 1 1456777899999999999999999988876211
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
..+...+|.+|.+.+++++.. .| +. .+.. ..+..+|..+...|+|++|..+|.++-
T Consensus 1167 ---~~Idt~LafaYAKl~rleele-~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~------- 1222 (1630)
T 1xi4_A 1167 ---SYVETELIFALAKTNRLAELE-EF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS------- 1222 (1630)
T ss_pred ---ccccHHHHHHHHhhcCHHHHH-HH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------
Confidence 111224888888888887533 33 11 1222 345579999999999999999998852
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.|..++.++...|++++|++.++++... .+|...+..+...|++..|..+... +.
T Consensus 1223 -----------ny~rLA~tLvkLge~q~AIEaarKA~n~-------------~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1223 -----------NFGRLASTLVHLGEYQAAVDGARKANST-------------RTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHhCCH-------------HHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 3467888999999999999998886322 4777888888889999998887664 22
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC--CChHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLE 521 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~~A~~ 521 (581)
.+++ .+..++..|...|.+++|+.++++++.+. +.....+..++.++.+-. +.. ++++
T Consensus 1278 --------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklm-Ehlk 1337 (1630)
T 1xi4_A 1278 --------VHAD---ELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMR-EHLE 1337 (1630)
T ss_pred --------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHH-HHHH
Confidence 2333 44588899999999999999999998643 333355666777776643 223 5555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 522 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 522 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
+|...+.+-+-+ ..-+....|..+..+|.+-|+++.|...+-+.
T Consensus 1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 555444321100 01245667889999999999999999655444
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=3.4e-16 Score=138.33 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
..+..+|.++...|++++|+..|+++++... +....++..+|.++...|++++|+..++++++. +
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence 6788999999999999999999999999821 133467778999999999999999999999975 5
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
|....++..+|.+|...|++++|+..++++++. .|+++ ....++..+|.++...|++++|+..|+++++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 678889999999999999999999999999987 23333 2335688999999999999999999999986
Q ss_pred HHHHhcCCCChH--HHHHHHHHHHHHHHccCH---------------------------HHHHHHHHHHHHHHHHhcCCC
Q 008016 402 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD 452 (581)
Q Consensus 402 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~ 452 (581)
+ .|. ...++.++|.+|...|+. ++|+.++++++++
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-------- 209 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-------- 209 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence 5 466 678999999999999988 8888888888885
Q ss_pred CcchHHHHHHHHHHH
Q 008016 453 DQSISFPMLHLGITL 467 (581)
Q Consensus 453 ~~~~~~~~~~la~~~ 467 (581)
.|....+...++.+.
T Consensus 210 ~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 210 SPNRTEIKQMQDQVK 224 (228)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344444555555543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=9.2e-16 Score=135.57 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
..++..|..+...|++++|+..|+++++. .| ....++..+|.++...|++++|+..+++++...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----- 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL----------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN----- 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc----------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----
Confidence 45889999999999999999999999987 43 455677889999999999999999999988654
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
|....++..+|.++...|++++|+..+++++... ++++ ..+.++..+|.++...|++++|+..|+++++
T Consensus 73 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 73 --YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp --CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred --cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5677789999999999999999999999999863 3333 2347799999999999999999999999988
Q ss_pred HHHHhcCCCChh--hHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHH
Q 008016 274 ILELNRGTESAD--LVLPLFSLGSLFIKEGKA---------------------------VDAESVFSRILKI 316 (581)
Q Consensus 274 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~ 316 (581)
+ .|. ...++..+|.+|...|+. ++|+.++++++++
T Consensus 146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6 667 788999999999999988 7888888888876
No 83
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.72 E-value=1.2e-15 Score=132.14 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=148.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (581)
...|++++|...++... .+.+....++..+|.++...|++++|+.++++++++.+.. ++.+....++.++
T Consensus 3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence 46789999998554331 1234678899999999999999999999999999988765 4556788899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (581)
|.++...|++++|+.++++++.+.+.. +.++.....++.++|.++...|++++|+.++++++.+.... .+.....
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~ 147 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA 147 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence 999999999999999999999998863 32444667788999999999999999999999999987664 3444556
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
.++..+|.++...|++++|+.++++++++..+.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 778999999999999999999999999988765
No 84
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=2.1e-15 Score=130.60 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=155.0
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 008016 214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL 293 (581)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 293 (581)
...|++++|...++.... ++.....++..+|.++...|++++|+.++++++.+.+.. ++.+....++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence 467999999985543321 233568889999999999999999999999999988764 3567778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 008016 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373 (581)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 373 (581)
|.++...|++++|+.++++++++.+.. +.+......++.++|.++...|++++|+.++++++.+.+.. .+.....
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~ 147 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIA 147 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence 999999999999999999999998754 22333678889999999999999999999999999987753 4455566
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424 (581)
Q Consensus 374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 424 (581)
.++.++|.++...|++++|..++++++.+.++. .+......++..++.+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccch
Confidence 778999999999999999999999999998775 3334444555555443
No 85
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.70 E-value=3.1e-15 Score=137.53 Aligned_cols=194 Identities=10% Similarity=0.048 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
.....+...+..+...|++++|...++++++.. +..+.. ...+..+|.++...|++++|+.++++++.....
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 334445556788899999999999999988742 223332 345567999999999999999999999985322
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (581)
..+....+.++.++|.+|...|++++|+.+|+++++..+.. +.+.+....++.++|.+|..+|++++|+.+++++
T Consensus 148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12233456789999999999999999999999999988763 3466777889999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHh
Q 008016 400 LLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 448 (581)
+.+.... .+....+.++.++|.+|...| .+++|+.++++++.+.+..
T Consensus 223 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 223 IEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9998765 455667889999999999999 5799999999999998865
No 86
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.70 E-value=2.2e-15 Score=138.59 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
....+...+..+...|++++|+..+.++++.... ..........+..+|.++...|++++|+.+++++++..... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 3455667788999999999999999999886321 01112344566789999999999999999999999764321 2
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
+......++.++|.+|...|++++|+.++++++++.+.. +.+......++.++|.+|..+|++++|+.++++++.+.
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 233457789999999999999999999999999887763 22223333788999999999999999999999999997
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHccCHHHH-HHHHHHHHHHHHHh
Q 008016 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMTKT 448 (581)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 448 (581)
... .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus 227 ~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 227 CRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred Hhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 543 44555678999999999999999999 88899999987654
No 87
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.3e-15 Score=137.69 Aligned_cols=225 Identities=13% Similarity=0.121 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH-------HCCCH-------HHHHHHHHHHHHHHHhhccCCCCC
Q 008016 304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-------ANGNA-------EEAVELYKKALRVIKDSNYMSLDD 369 (581)
Q Consensus 304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 369 (581)
++|+..|++++.. .|....+|..+|..+. ..|++ ++|...|++++.. ..|+.
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------~~p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN 98 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------TTTTC
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------hCccc
Confidence 6888999999986 3555677888888776 46885 8999999999873 12333
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
..++..+|.++...|++++|...|++++.+ .+..+. .++..+|.++...|++++|+..|+++++.
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----- 163 (308)
T 2ond_A 99 ---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED----- 163 (308)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence 446788999999999999999999999875 233332 27889999999999999999999999873
Q ss_pred CCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 450 GPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
.|.....+...+.+... .|++++|...|+++++.. |++ ...+..++.++...|+.+ +|+..|++++.
T Consensus 164 ---~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~g~~~-~A~~~~~~al~ 231 (308)
T 2ond_A 164 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDN-NTRVLFERVLT 231 (308)
T ss_dssp ---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHTTCCHH-HHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHCCCHH-HHHHHHHHHHh
Confidence 23334555555555433 799999999999999875 343 477899999999999999 99999999987
Q ss_pred HHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 529 IQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 529 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
.. ...| .....+..++..+...|+.++|..++++++++.++
T Consensus 232 ~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 232 SG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred cc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 31 1123 24567888899999999999999999999998875
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=2.3e-15 Score=139.45 Aligned_cols=224 Identities=9% Similarity=0.003 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHHHhhcCCCcc
Q 008016 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-------IGDL-------KFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
++|+..|++++.. .|..+.++..+|..+.. .|++ ++|+..+++++... .|
T Consensus 33 ~~a~~~~~~al~~----------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LK 96 (308)
T ss_dssp HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TT
T ss_pred HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------Cc
Confidence 6888999999987 77788899999988764 5886 89999999987731 14
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
....++..+|.++...|++++|...|++++.+ .+..+. .++..+|.++...|++++|...|+++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------ 163 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED------ 163 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence 45567899999999999999999999999984 222221 27889999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
.|....++...+.+.. ..|++++|...|+++++.. |.....+..++.++...|++++|..+|++++...
T Consensus 164 --~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 164 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp --TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 2223445555555543 3799999999999999873 3446778899999999999999999999998741
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
. ..| .....++..++..+...|++++|..+++++++..
T Consensus 234 ~----l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 234 S----LPP--EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp S----SCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred C----CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 0 111 1234567788999999999999999999999875
No 89
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.69 E-value=3.9e-15 Score=136.89 Aligned_cols=196 Identities=15% Similarity=0.050 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
.....+...+..+...|++++|...+.++++..... +........+..+|.++...|++++|+.++++++.....
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--- 147 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--- 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC---
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---
Confidence 344556677889999999999999999988752110 001123455677999999999999999999999986432
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
..+......++.++|.+|...|++++|+.++++++.+.+.. ++.+.. ..++.++|.+|..+|++++|+.+++++++
T Consensus 148 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp -SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23344456788999999999999999999999999987765 233333 37899999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA 490 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 490 (581)
+.... .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus 225 ~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 225 ISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 87542 34455678899999999999999999 88899999987654
No 90
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.1e-13 Score=133.44 Aligned_cols=239 Identities=8% Similarity=-0.031 Sum_probs=194.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC----------cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008016 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD----------EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234 (581)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 234 (581)
....|..+...|++++|++.+.++++..+..... ......++..+|.+|...|++++|..++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4455777888999999999999988865432211 123345688999999999999999999999999876
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314 (581)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 314 (581)
.. .+......+...++.++...|++++|+.++++++...... .+.+....++..+|.+|...|++++|..++++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 53 2223445667788999999999999999999999988764 3456678899999999999999999999999998
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (581)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (581)
...... .+.+....++..++.+|...|++++|..++++++.+.... ...+......+..+|.++...|++++|..
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 876554 4567788999999999999999999999999999987763 33345567788889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCh
Q 008016 395 LLEECLLITEKYKGKEHP 412 (581)
Q Consensus 395 ~~~~al~~~~~~~~~~~~ 412 (581)
++.+++............
T Consensus 238 ~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHhhhhhhhhhH
Confidence 999999988776444443
No 91
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-14 Score=139.08 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=192.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
....|..+...|++++|++.|.++++..+...... ......++..+|.+|...|++++|.+++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44567778889999999999999988643321100 123345788999999999999999999999998876
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
.. .+......+...++.++...|++++|+.++++++.+..+. .+......++.++|.+|...|++++|..++++
T Consensus 87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----KRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 53 2223345667788999999999999999999999998763 34445577889999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478 (581)
Q Consensus 399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 478 (581)
++...... .+.+....++..+|.+|...|++++|..++++++.+...... .+......+..+|.++...|++.+|..
T Consensus 161 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 161 LLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 98876554 457788899999999999999999999999999998766522 123345677888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCh
Q 008016 479 LVLEALYIREIAFGKDSL 496 (581)
Q Consensus 479 ~~~~a~~~~~~~~~~~~~ 496 (581)
+|.++++...........
T Consensus 238 ~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHhhhhhhhhhH
Confidence 999999988766444443
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.67 E-value=8.3e-15 Score=134.70 Aligned_cols=194 Identities=11% Similarity=0.061 Sum_probs=159.0
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL---DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (581)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (581)
.....+...+..+...|++++|...++++.... ...+.. ...+..+|.++...|++++|+.++++++.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~- 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT- 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-
Confidence 334445556778889999999999999987743 222332 345566899999999999999999999985322
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
..+....+.++.++|.+|...|++++|+.+|+++++..+.. ..+.+....++.++|.+|..+|++++|+.++++++++
T Consensus 148 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22333456789999999999999999999999999988764 2356777889999999999999999999999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhh
Q 008016 317 YTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 362 (581)
.... .+....+.++.++|.+|...| ++++|+.++++++.+.+..
T Consensus 226 ~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 8765 445667899999999999999 5799999999999998863
No 93
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.67 E-value=1.1e-15 Score=145.66 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=117.4
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||+++..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
.+|..+|++++|+.+|++|+++.+..+|++||.+.....+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999888776654
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.67 E-value=2.3e-14 Score=125.91 Aligned_cols=177 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
...++.+|..+...|++++|+..|+++++. .++++....++..+|.+|...|++++|+..|+++++.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 456888999999999999999999999987 24456667899999999999999999999999999863 55
Q ss_pred CchHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH------------
Q 008016 325 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------------ 374 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 374 (581)
++....++..+|.++.. .|++++|+..|+++++. .|+.+....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-------YPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-------CTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-------CcCChhHHHHHHHHHHHHHHH
Confidence 66666788888988876 67899999999999876 334333222
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 375 --MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 375 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
....+|.+|...|++++|+..|+++++.. ++++....++..+|.+|...|++++|+..++++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 12568899999999999999999999874 55666778999999999999999999999997765
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.6e-16 Score=147.88 Aligned_cols=332 Identities=13% Similarity=0.012 Sum_probs=147.9
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
-+.|+.++|.+++++.- . +.++..+|.++...|++++|++.|.++. ....+..
T Consensus 14 ~~~~~ld~A~~fae~~~------------~---~~vWs~La~A~l~~g~~~eAIdsfika~------------D~~~y~~ 66 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------------E---PAVWSQLAKAQLQKGMVKEAIDSYIKAD------------DPSSYME 66 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------------C---hHHHHHHHHHHHHcCCHHHHHHHHHcCC------------CHHHHHH
Confidence 36678899998888751 2 2489999999999999999999997631 1125677
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
++..+...|++++|+.+++.+.+.. +. ..+...++.+|.+.|++.++.++++. |. ..
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~ 123 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA 123 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence 8888899999999999998887631 11 45567789999999999998877741 21 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
++..+|..+...|++++|..+|.++ ..+..+|.++.+.|++++|++.++++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~----------- 176 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------- 176 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------
Confidence 8999999999999999999999975 2477899999999999999999998821
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
..+|..++.++...|+++.|..+.... ..+|+. ...++.+|.+.|++++|+.++++++.+
T Consensus 177 ----~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l---- 236 (449)
T 1b89_A 177 ----TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---LEELINYYQDRGYFEELITMLEAALGL---- 236 (449)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred ----chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC----
Confidence 345677888999999999996655431 134544 335888999999999999999999873
Q ss_pred cCCCCcchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016 449 VGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 526 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a 526 (581)
++.....+..||.+|.+ -++..+.++.|...+.+.+-+.. -.....+..+..+|...++++ .|+..+-+.
T Consensus 237 ----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d-~A~~tm~~h 308 (449)
T 1b89_A 237 ----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYD-NAIITMMNH 308 (449)
T ss_dssp ----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHH-HHHHHHHHS
T ss_pred ----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHH-HHHHHHHhC
Confidence 35556677888877765 45666677666655443320000 011234778899999999999 776654432
Q ss_pred HH------HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016 527 LR------IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 569 (581)
Q Consensus 527 ~~------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 569 (581)
.. .+..++. .+...+.++.....|. +....++.-+..++
T Consensus 309 ~~~a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 309 PTDAWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp TTTTCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred ChhhhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 11 1111100 1223455666666665 44455555555544
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=3.2e-14 Score=125.02 Aligned_cols=177 Identities=10% Similarity=-0.004 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (581)
...+..+|..+...|++++|+..|++++.. .|+.+....++..+|.++...|++++|+..|+++++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----- 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----- 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----
Confidence 356788999999999999999999999986 35555556678999999999999999999999999873
Q ss_pred CCChHHHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH-----------
Q 008016 409 KEHPSFVTHLLNLAASYSR------------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFP----------- 459 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~----------- 459 (581)
++++....++..+|.++.. .|++++|+..|+++++. .|+++....+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHH
Confidence 5556666688888888876 67999999999999874 2444433222
Q ss_pred ---HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 460 ---MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 460 ---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
...+|.+|...|++++|+..|+++++.. |+++....++..+|.++.+.|+.+ +|+..++++..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~-~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNA-QAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcH-HHHHHHHHHHh
Confidence 2567899999999999999999999876 677777789999999999999999 99999987765
No 97
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.2e-14 Score=123.71 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=145.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
......+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 445678889999999999999999999988753 3445678899999999999999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.++. ..++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.
T Consensus 72 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 72 --APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 2222 3466889999999999999999999998762 33456788999999999999999999999988
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
. .|....++..+|.++...|++++|..+++++++..
T Consensus 139 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 139 L--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5 34556788999999999999999999999998875
No 98
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.65 E-value=4.2e-15 Score=141.58 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=117.8
Q ss_pred HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
..|++++|+.++++++++.++.++++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008016 507 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV 549 (581)
Q Consensus 507 ~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 549 (581)
.+|..+|+++ +|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus 390 ~~~~~qg~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKA-AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999 99999999999999999999999988777654
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.1e-14 Score=123.94 Aligned_cols=172 Identities=16% Similarity=0.105 Sum_probs=147.5
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016 158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 237 (581)
.......+..+|.++...|++++|+..++++.... |....++..+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---- 72 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---- 72 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 44567788999999999999999999998865442 3345678999999999999999999999998862
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
+ ....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..+++++++.
T Consensus 73 -~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 139 (186)
T 3as5_A 73 -P---DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL- 139 (186)
T ss_dssp -T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred -C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Confidence 2 23567889999999999999999999999987 3445678899999999999999999999999886
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
.|....++..+|.++...|++++|..+++++++...
T Consensus 140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 234467889999999999999999999999998754
No 100
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.64 E-value=3.9e-15 Score=142.34 Aligned_cols=132 Identities=10% Similarity=-0.032 Sum_probs=125.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460 (581)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 460 (581)
.-+..+|++++|+..+++++++..+.+|++||.++.++.++|.+|..+|++++|+.++++++++.++.+|++||.++..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 512 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 512 (581)
++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+....
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887543
No 101
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.63 E-value=4.5e-14 Score=117.22 Aligned_cols=158 Identities=19% Similarity=0.163 Sum_probs=137.8
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
+.+....++..+|.++...|++++|+.+++++++..+.. .+......++..+|.++...|++++|+.++++++.+.+.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999998775 344556788999999999999999999999999999876
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
. +++.....++.++|.++...|++++|+.++++++...... .+.+....++..+|.++...|++++|+.+++++
T Consensus 82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 L----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp T----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h----CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3 4556667788999999999999999999999999998765 345667788999999999999999999999999
Q ss_pred HHHHHH
Q 008016 442 LDIMTK 447 (581)
Q Consensus 442 l~~~~~ 447 (581)
+++.++
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987643
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2e-15 Score=155.22 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=163.1
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
...|++++|++.++++++..-.. .....|....++..+|.++...|++++|+..++++++.. |....+++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDA--DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccc--cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHH
Confidence 78899999999999998210000 012267788899999999999999999999999998875 455678899
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 288 (581)
+|.++...|++++|+..|++++++. |....++.++|.++...|++++ +..|++++++ +|....
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~ 535 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVIS 535 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHH
Confidence 9999999999999999999999863 2336788999999999999999 9999999998 666788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHhh
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIKDS 362 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~ 362 (581)
+++++|.++...|++++|+..|++++++ +|....++.++|.++...++.+++ ..-+.+++......
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999999999864 677889999999999888876666 67777777776653
No 103
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=1.7e-16 Score=147.84 Aligned_cols=294 Identities=13% Similarity=0.044 Sum_probs=128.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008016 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251 (581)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 251 (581)
....|+.++|.+++++. ++| .+|..+|.++...|++++|++.|.++-. ...+..+
T Consensus 13 l~~~~~ld~A~~fae~~---------~~~---~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y~~V 67 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC---------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC---------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHHHHH
Confidence 34668889999988875 223 3788999999999999999999976421 3367778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
+..+...|++++|+.+++.+++.. ++ +.+...++.+|.+.|++.++.++++. |. ..+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a 124 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NAH 124 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTC-------------C-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHH
Confidence 889999999999999998887641 11 45677889999999999998877742 22 248
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 411 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 411 (581)
+..+|..+...|++++|..+|.++ ..+..+|.++..+|++++|++.++++. +
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~ 176 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV------------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S 176 (449)
T ss_dssp ------------CTTTHHHHHHHT------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh------------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C
Confidence 999999999999999999999975 134789999999999999999999872 1
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (581)
..+|...+.++...|+++.|..+..... .+|+. ...++..|.+.|++++|+.++++++.+.
T Consensus 177 ---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le---- 237 (449)
T 1b89_A 177 ---TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALGLE---- 237 (449)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred ---chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence 2467788899999999999966555311 24544 3468889999999999999999997632
Q ss_pred CCCChhHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 492 GKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 492 ~~~~~~~~~~~~~la~~~~~~g--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
+.....+..|+.+|.+-. +.. +.++.|...+.+.+-+ ..-+....|..+..+|...++++.|...+-+.
T Consensus 238 ----~ah~~~ftel~il~~ky~p~k~~-ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 238 ----RAHMGMFTELAILYSKFKPQKMR-EHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp ----TCCHHHHHHHHHHHHTTCHHHHH-HHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 333466777888877653 222 3333333322221100 00033456788999999999999998865543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=1.7e-15 Score=123.41 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=121.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV 287 (581)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 287 (581)
.||.++...|++++|+..+++++. ..|.....++.+|.+|...|++++|+.+|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 478889999999999999999876 34666778899999999999999999999999998 67778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccCC
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS 366 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 366 (581)
.++..+|.+|...|++++|+..|++++++ +|....++.++|.+|...|++++|... +++++++ .
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~ 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence 89999999999999999999999999987 456678899999999999999887765 5899987 4
Q ss_pred CCChHHHHHHHHHHHHHHHcCC
Q 008016 367 LDDSIMENMRIDLAELLHIVGR 388 (581)
Q Consensus 367 ~~~~~~~~~~~~la~~~~~~g~ 388 (581)
|+++. ++...+.++...|+
T Consensus 131 P~~~~---~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPA---VYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHH---HHHHHHHHHHTCCC
T ss_pred cCCHH---HHHHHHHHHHHhCc
Confidence 55544 44667777777765
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.9e-15 Score=153.99 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=160.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335 (581)
Q Consensus 256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 335 (581)
...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++. +|....++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 7789999999999999822111112235677889999999999999999999999999986 35567889999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (581)
|.++...|++++|+..|++++++ .|+. ..++.++|.++...|++++ +..|++++++ .|...
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l-------~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~ 534 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT-------FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI 534 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-------STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence 99999999999999999999997 3333 4566899999999999999 9999999987 35556
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA 490 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~ 490 (581)
.++.++|.++...|++++|+..|++++++ +|....++.++|.++...|+.+++ ...++++++.....
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 78999999999999999999999999873 677888999999999887776665 66777777666544
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=1.7e-15 Score=123.37 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016 250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329 (581)
Q Consensus 250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 329 (581)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999988764 5667788899999999999999999999999987 46667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcC
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL-LEECLLITEKYKG 408 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~ 408 (581)
.++..+|.+|...|++++|+..|++++++ .|+. ..++.++|.++...|++++|... +++++++.
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----- 130 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL-------NPTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----- 130 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----
Confidence 89999999999999999999999999997 3333 45678999999999999887765 58998872
Q ss_pred CCChHHHHHHHHHHHHHHHccC
Q 008016 409 KEHPSFVTHLLNLAASYSRSKN 430 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~ 430 (581)
|....++...+.++..+|+
T Consensus 131 ---P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 ---PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---TTCHHHHHHHHHHHHTCCC
T ss_pred ---cCCHHHHHHHHHHHHHhCc
Confidence 3444567778888887775
No 107
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.62 E-value=6.1e-15 Score=141.00 Aligned_cols=131 Identities=9% Similarity=-0.058 Sum_probs=125.5
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016 424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD 503 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (581)
-+..+|++++|+.++++++++..+.++++||.++.++.++|.+|..+|+|++|+.++++++++.+..+|++||.++..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016 504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL 555 (581)
Q Consensus 504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 555 (581)
+||.+|..+|+++ +|+.++++|+++.+..+|++||.+..++.+|+.+....
T Consensus 376 nLa~~~~~~g~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFP-QAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999887654
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=4.2e-14 Score=122.44 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE 350 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 350 (581)
+..+...|..+...|++++|+..|+++++. +|....++.. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456677899999999999999999999987 4566677777 9999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (581)
Q Consensus 351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (581)
.|++++++ .|+. ..++.++|.++...|++++|+..|++++++ .|....++.++|.+|...|+
T Consensus 76 ~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 76 FYKELLQK-------APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence 99999997 3333 456789999999999999999999999987 35556789999999987765
Q ss_pred H--HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 431 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 431 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
. ..+...+++++. + .| ...+++.+|.++...|++++|+..|++++++.
T Consensus 138 ~~~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4 445555555432 1 22 23467788999999999999999999998754
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.62 E-value=8e-14 Score=115.70 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=137.8
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
+.+..+.++..+|.++...|++++|+.++++++.+.+.. .+......++..+|.++...|++++|+.++++++++...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999999999999999998774 344566788999999999999999999999999999876
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 357 (581)
. ++.+....++..+|.++...|++++|..+++++++..+.. .+.+....++..+|.++...|++++|..+++++++
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4 3455667889999999999999999999999999987765 34556788899999999999999999999999999
Q ss_pred HHHh
Q 008016 358 VIKD 361 (581)
Q Consensus 358 ~~~~ 361 (581)
+.++
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8654
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=4.2e-14 Score=122.45 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH----------------HHHHHHHcCCHHHHHH
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS----------------LGSLFIKEGKAVDAES 308 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 308 (581)
+..+...|..+...|++++|+..|+++++. .|....++.. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 445677899999999999999999999998 6677777888 9999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (581)
Q Consensus 309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (581)
.|++++++ +|....++.++|.++...|++++|+..|++++++ .|++ ..++.++|.+|...|+
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-------EADN---LAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC---HHHHHHHHHHHHHHhH
Confidence 99999987 4566788999999999999999999999999997 3444 4567899999987765
Q ss_pred h--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 389 G--QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 389 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
. ..+...+++++. + .+ ...+++.+|.++...|++++|+..|++++++
T Consensus 138 ~~~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 344444444321 1 22 2346777899999999999999999999984
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=3.2e-13 Score=105.89 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
-+|..+..+.++|..|+..|++++|+..|++++++ .|....++.++|.+|..+|++++|+..+++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 45888999999999999999999999999999998 5667889999999999999999999999999987
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|....++.++|.++...|++++|+..|++++++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999997
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=2.1e-13 Score=106.88 Aligned_cols=118 Identities=13% Similarity=0.111 Sum_probs=103.1
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
.-+|..+..+..+|..++..|++++|+..|++++++. |....++.++|.+|...|++++|+..+++++++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 3458889999999999999999999999999999862 334678999999999999999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (581)
+|....++..+|.++..+|++++|+..|++++++ +|....++..++.+
T Consensus 77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC 124 (126)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence 5667889999999999999999999999999987 45555666666654
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.52 E-value=2.8e-12 Score=115.98 Aligned_cols=237 Identities=6% Similarity=-0.108 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHh
Q 008016 117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 193 (581)
....+........+.|.+ ++|+..+++++.+ +|+...+++..+.++...| ++++++.+++.++...
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n- 99 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINE----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN- 99 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-
Confidence 334466666677777777 5899999999998 9999999999999999999 9999999999988764
Q ss_pred hcCCCcchHHHHHHHHHHHH----Hhc---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHH--HH
Q 008016 194 SLKDDEPLLDAILLHMGSMY----STL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--KA 264 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A 264 (581)
|....+|+..+.++ ... +++++++.++.+++.. +|....++...+.+....|.++ ++
T Consensus 100 ------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 100 ------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred ------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence 44455677788877 656 7899999999999985 2344788999999999999998 99
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (581)
Q Consensus 265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (581)
++++.++++. +|....++...+.+....|+ ++++++++.+++.. +|....+++.++.+
T Consensus 166 L~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~l 229 (306)
T 3dra_A 166 LSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGI 229 (306)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHH
Confidence 9999999987 67778899999999999887 89999999999986 56777889999999
Q ss_pred HHHCCCHHH-HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 339 KCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 339 ~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
+...|+..+ ...++.+++... ...+....++..++.++...|+.++|+++|+.+.+
T Consensus 230 l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 230 HERFDRSITQLEEFSLQFVDLE-------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCCGGGGHHHHHTTEEGG-------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999998555 444555554431 01122244668899999999999999999999765
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.51 E-value=5.2e-13 Score=115.85 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 008016 135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS 214 (581)
Q Consensus 135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (581)
.+|+.+|+++.+ ...+.+++.+|.+|...+++++|+.+|+++.+. ....+++.+|.+|.
T Consensus 3 ~eA~~~~~~aa~------------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------g~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAE------------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---------GDGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHH------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHH------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Confidence 356777877764 245778999999999999999999999998653 12356889999998
Q ss_pred hcc----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 215 TLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 215 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
. + ++++|+.+|+++.+. . ...++.++|.+|.. .+++++|+.+|+++.+. .+....
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~ 124 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAA 124 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcch
Confidence 8 7 999999999999652 2 25688999999998 89999999999999865 111145
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHH
Q 008016 287 VLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-G-----NAEEAVELYKKAL 356 (581)
Q Consensus 287 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al 356 (581)
+.++++||.+|.. .+++++|+.+|+++.+. +. ...++.+||.+|... | ++++|+.+|+++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 7899999999999 89999999999999874 12 234788999999874 3 8999999999998
Q ss_pred HH
Q 008016 357 RV 358 (581)
Q Consensus 357 ~~ 358 (581)
+.
T Consensus 196 ~~ 197 (212)
T 3rjv_A 196 LE 197 (212)
T ss_dssp HH
T ss_pred Hc
Confidence 86
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=6.6e-13 Score=121.20 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=143.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
|.....+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 345667889999999999999999999999986 4556788999999999999999999999998764
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
.|+. .......+..+...++.++|+..+++++.. .|+...++.++|.++...|++++|+..|++++.
T Consensus 181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2322 233456667788889999999999999887 356667899999999999999999999999998
Q ss_pred HHHHhcCCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 444 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 444 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
. +|.. ..++..++.++...|+.++|...|++++..
T Consensus 248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 5 3444 678999999999999999999999998764
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.50 E-value=1.2e-12 Score=113.59 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 008016 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341 (581)
Q Consensus 262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 341 (581)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. ....++.+||.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3577788887754 23678999999999999999999999999863 235788999999998
Q ss_pred CC----CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChH
Q 008016 342 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS 413 (581)
Q Consensus 342 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (581)
+ ++++|+.+|+++.+. .+ ..++.+||.+|.. .+++++|+.+|+++.+. .....
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~ 123 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDA 123 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcc
Confidence 7 999999999999653 12 3466899999987 89999999999998764 11114
Q ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHH
Q 008016 414 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA 483 (581)
Q Consensus 414 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a 483 (581)
...++.+||.+|.. .+++++|+.+|+++.+. +....++.+||.+|... | ++++|+.+|+++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 56789999999999 88999999999999873 22334789999999864 3 899999999999
Q ss_pred HHH
Q 008016 484 LYI 486 (581)
Q Consensus 484 ~~~ 486 (581)
.+.
T Consensus 195 ~~~ 197 (212)
T 3rjv_A 195 CLE 197 (212)
T ss_dssp HHH
T ss_pred HHc
Confidence 874
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=7.9e-13 Score=120.68 Aligned_cols=166 Identities=12% Similarity=0.021 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 197 (581)
...++..|..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----- 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD----- 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----
Confidence 345788999999999999999999999988 88888999999999999999999999999875543
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
|.........+..+...++.++|+..+++++... |....++..+|.++...|++++|+..|+++++.
T Consensus 182 --p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--- 248 (287)
T 3qou_A 182 --QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX--- 248 (287)
T ss_dssp --CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred --cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---
Confidence 3334455667777888999999999999998862 344678999999999999999999999999998
Q ss_pred hcCCCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 278 NRGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 278 ~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+|.. ..++..++.++...|+.++|...|++++..
T Consensus 249 -----~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 -----DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp -----CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -----ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3444 778999999999999999999999998864
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.49 E-value=1.9e-11 Score=110.61 Aligned_cols=226 Identities=10% Similarity=-0.058 Sum_probs=184.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAM 332 (581)
Q Consensus 255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 332 (581)
.......++|+..+.+++.+ +|....+++..+.++...| ++++++..+.+++.. +|....++
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW 106 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIW 106 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHH
Confidence 33344557999999999998 7888899999999999999 999999999999986 55666788
Q ss_pred HHHHHHH----HHC---CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHH
Q 008016 333 CSLAHAK----CAN---GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--EGRELLEECLLIT 403 (581)
Q Consensus 333 ~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~ 403 (581)
+..+.++ ... +++++++.++.++++.. |.+ ..++...+.++...|+++ +++++++++++.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-------pkn---y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~- 175 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-------PKN---HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT- 175 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-
Confidence 8888888 666 88999999999999872 222 557788999999999998 999999999876
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-H
Q 008016 404 EKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-A 476 (581)
Q Consensus 404 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A 476 (581)
++....++...+.+....|+ ++++++++.+++.. +|....++..++.++...|+..+ .
T Consensus 176 -------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 176 -------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp -------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred -------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHH
Confidence 45566788999999988887 99999999999985 67778899999999999998655 4
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016 477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528 (581)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~ 528 (581)
..++.++++.. ...+....++..++.++.+.|+.+ +|+++|+.+.+
T Consensus 241 ~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~-~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYN-ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Confidence 44555555421 123455578999999999999999 99999998765
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=3.1e-13 Score=113.62 Aligned_cols=163 Identities=11% Similarity=0.085 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 199 (581)
.++..+..+...|++++|+..|+++++. .|..+.++..+|.++...|++++|+..++++.... + +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~ 72 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D 72 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C
Confidence 3678889999999999999999999987 78888999999999999999999999999876543 2 2
Q ss_pred chHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 200 PLLDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 200 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
+.. ...++.+. ...+...+|+..+++++... |....++..+|.++...|++++|+..++++++.
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 137 (176)
T 2r5s_A 73 NSY---KSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV---- 137 (176)
T ss_dssp HHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hHH---HHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence 322 23334332 23345556899999998852 334678999999999999999999999999876
Q ss_pred cCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 279 RGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 279 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.|. ...++..+|.++...|+.++|...|++++..
T Consensus 138 ----~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 ----NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ----CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ----CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 332 2457889999999999999999999998864
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=2.7e-13 Score=113.96 Aligned_cols=164 Identities=19% Similarity=0.081 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 367 (581)
..+..+|..+...|++++|+..|+++++. +|....++..+|.++...|++++|+..+++++.. .|
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------YQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------GC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------cC
Confidence 45678899999999999999999999986 3556788999999999999999999999998764 23
Q ss_pred CChHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 008016 368 DDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 368 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (581)
.+.. ...++.+. ...++..+|+..+++++.. .|....++..+|.++...|++++|+..|+++++.
T Consensus 72 -~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 137 (176)
T 2r5s_A 72 -DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-- 137 (176)
T ss_dssp -CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred -ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--
Confidence 3322 22233332 2334445688999998876 3555678999999999999999999999999873
Q ss_pred HhcCCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 447 KTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 447 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
+|. ...++..++.++...|+.++|...|++++..
T Consensus 138 ------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 ------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp ------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred ------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 333 2457889999999999999999999998763
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.48 E-value=2.1e-12 Score=113.70 Aligned_cols=212 Identities=14% Similarity=0.008 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCChHHHHHHHH
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-------ALGYVYIGDLKFVQSLLD 186 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~ 186 (581)
..+.+..++..+..+ ..+++..|...|.++++. .|....++..+ +.++...++..+++..++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~ 71 (282)
T 4f3v_A 3 MTDRLASLFESAVSM-LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS 71 (282)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred chHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 345567788888776 689999999999999998 89999999999 788888888888888888
Q ss_pred HHHHHHhhcCCCcc--------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016 187 MMSGIVDSLKDDEP--------------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252 (581)
Q Consensus 187 ~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 252 (581)
+.+.+....-.... ....+...++.++...|++++|...|..++. ..|... ..+.+|
T Consensus 72 ~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a 142 (282)
T 4f3v_A 72 GSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKA 142 (282)
T ss_dssp HTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHH
T ss_pred HHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHH
Confidence 76664322111110 1234556788899999999999999987764 234445 889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHH
Q 008016 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM 330 (581)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~ 330 (581)
.++...+++++|+.+++++... .++. ...+++.+|.++...|++++|+.+|++++. ++..|. ...
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~d 209 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARA 209 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHH
T ss_pred HHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHH
Confidence 9999999999999999865432 1232 245889999999999999999999999874 232244 677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+...+|.++..+|+.++|...|++++..
T Consensus 210 a~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 210 IAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999986
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=3.9e-12 Score=99.94 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
++.+.++.++|..+...|++++|+.+|++++++ +|....++.++|.+|...|++++|+..+++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456778899999999999999999999999987 45667889999999999999999999999999997763
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.......+.++.++|.++...|++++|+++|++++..
T Consensus 76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455667788999999999999999999999999875
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=3.5e-12 Score=100.20 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
++.+.++.++|..+...|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..+++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 356778899999999999999999999999998 56678899999999999999999999999999987654
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....+..+.++.++|.++...|++++|+++|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2334456789999999999999999999999999986
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.46 E-value=3.6e-12 Score=112.21 Aligned_cols=209 Identities=12% Similarity=0.020 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL-------GSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
..++..|..+ ..+++..|...|.+++.+ +|....+|..+ +.++...++..+++..+.+.+.+..
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p 78 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM 78 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 3445556565 589999999999999998 78889999999 8999999999999999988887543
Q ss_pred HHcCCCCc-------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016 319 KVYGENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385 (581)
Q Consensus 319 ~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 385 (581)
..++.... ........++.++...|++++|.+.|..++.. + +... ..+.+|.++..
T Consensus 79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~---p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------G---SEHL-VAWMKAVVYGA 147 (282)
T ss_dssp GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------T---CHHH-HHHHHHHHHHH
T ss_pred hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------C---CchH-HHHHHHHHHHH
Confidence 33221111 12445667888999999999999999876532 2 2223 66889999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHH
Q 008016 386 VGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHL 463 (581)
Q Consensus 386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l 463 (581)
.+++++|+..++++... .++. ...+++.+|.++...|++++|+.+|++++. ++..|. ...+.+.+
T Consensus 148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence 99999999999865432 1333 245889999999999999999999999874 222254 66788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH
Q 008016 464 GITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
|.++..+|+.++|...|++++...
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999998853
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=3.3e-12 Score=103.00 Aligned_cols=103 Identities=9% Similarity=0.066 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
-+|....+++.+|.++...|++++|+..|++++.+ +|....++.++|.++...|++++|+..|++++++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--- 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--- 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 35778899999999999999999999999999998 6777889999999999999999999999999987
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|....++.++|.+|...|++++|+..|++++++
T Consensus 100 -----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 -----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455678999999999999999999999999997
No 126
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=1.1e-12 Score=132.87 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 008016 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH 337 (581)
Q Consensus 258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 337 (581)
.|++++|+..++++++. .|....++..+|.++...|++++|+..++++++. +|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999887 5566789999999999999999999999999975 4556788999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 008016 338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417 (581)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 417 (581)
+|...|++++|+.+++++++. .++. ...+.++|.++...|++++|+..++++++.. |....+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 127 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA-------APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYI 127 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence 999999999999999999987 2333 4567899999999999999999999999872 344568
Q ss_pred HHHHHHHHHHc---cCHHHHHHHHHHHHHH
Q 008016 418 LLNLAASYSRS---KNFVEAERLLRICLDI 444 (581)
Q Consensus 418 ~~~la~~~~~~---g~~~~A~~~~~~al~~ 444 (581)
+.++|.++... |++++|...++++++.
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 89999999999 9999999999999985
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=6.5e-10 Score=112.18 Aligned_cols=398 Identities=11% Similarity=0.071 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhhcC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 196 (581)
.+...+......++++.+...|+.++.. .|.....+...+..-...|+ ++.+..+|++++...
T Consensus 68 ~W~~yi~~~~~~~~~~~aR~vyEraL~~----------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~---- 133 (679)
T 4e6h_A 68 LYVKLLKHHVSLKQWKQVYETFDKLHDR----------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE---- 133 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS----
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc----
Confidence 3555556666788999999999999987 66667777777887888888 999999999987653
Q ss_pred CCcchHHHHHHHHHHHHHhccCH----HHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---------hcC
Q 008016 197 DDEPLLDAILLHMGSMYSTLENY----EKS----MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG---------SIG 259 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~----~~A----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------~~g 259 (581)
..+|.. .+|..........++. +++ ...|++|+..... ...++.. +|........ .++
T Consensus 134 ~~~~sv-~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~-~d~~s~~---iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 134 LGNNDL-SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI-FEPKSIQ---FWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp SCCCCH-HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT-TCSSCHH---HHHHHHHHHHTCCCCSHHHHHH
T ss_pred CCCCCH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc-ccccchH---HHHHHHHHHHhccccCcHHHHh
Confidence 111222 2344333333333433 333 3566666653211 0112222 2222222111 223
Q ss_pred CHHHHHHHHHHHHHH--------------HHHhcCCCC------------------------------------------
Q 008016 260 RAKKAVEIYHRVITI--------------LELNRGTES------------------------------------------ 283 (581)
Q Consensus 260 ~~~~A~~~~~~al~~--------------~~~~~~~~~------------------------------------------ 283 (581)
+.+.+..+|++++.+ +++..+...
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 344555555555431 000000000
Q ss_pred ----------hhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHH
Q 008016 284 ----------ADLVLPLFSLGSLFIKEG-------KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346 (581)
Q Consensus 284 ----------~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 346 (581)
......|......-...+ ..+.....|++++.. .|.....|...+..+...|+.+
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHH
Confidence 000111111111111110 012233455555554 2345567788888888899999
Q ss_pred HHH-HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc------CCCC--------
Q 008016 347 EAV-ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK------GKEH-------- 411 (581)
Q Consensus 347 ~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~-------- 411 (581)
+|. ..|++++..+ |.. ..++...+.+....|++++|..+|++++....... .+..
T Consensus 361 ~a~r~il~rAi~~~-------P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-------PNS---AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp THHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 997 9999998752 222 34567788899999999999999999998642111 0110
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHH
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~ 490 (581)
.....++...+.+..+.|+.+.|..+|.+|++.. .+.....+...+.+....| +.+.|..+|+.+++.+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--- 500 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---
Confidence 1244577788888888999999999999998731 1112345556666666655 4899999999999876
Q ss_pred cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 491 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 491 ~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
++.+ ..+...+......|+.+ .|..+|++++... +........+......-...|+.+.+..+.+++..
T Consensus 501 --p~~~---~~w~~y~~fe~~~~~~~-~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 501 --ATDG---EYINKYLDFLIYVNEES-QVKSLFESSIDKI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp --TTCH---HHHHHHHHHHHHHTCHH-HHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred --CCch---HHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444 34556677778889988 9999999988632 11125567788888888999999999999999998
Q ss_pred HHHHH
Q 008016 571 LRMKY 575 (581)
Q Consensus 571 l~~~~ 575 (581)
..++-
T Consensus 570 ~~P~~ 574 (679)
T 4e6h_A 570 KFPEV 574 (679)
T ss_dssp HSTTC
T ss_pred hCCCC
Confidence 87653
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=1.6e-12 Score=131.53 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=120.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210 (581)
Q Consensus 131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 210 (581)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..++++++.. |....++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLG 64 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 47899999999999876 67778899999999999999999999999988764 44466789999
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290 (581)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 290 (581)
.++...|++++|+.+++++++.. |....++..+|.++...|++++|+..++++++. .|....++
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 128 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYIT 128 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999999999999999862 223678999999999999999999999999998 45567889
Q ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHH
Q 008016 291 FSLGSLFIKE---GKAVDAESVFSRILKI 316 (581)
Q Consensus 291 ~~la~~~~~~---g~~~~A~~~~~~al~~ 316 (581)
..+|.++... |++++|...++++++.
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999999999 9999999999999886
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.40 E-value=6.6e-12 Score=101.26 Aligned_cols=104 Identities=11% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
.-+|....+++.+|.++...|++++|+..|++++.+. |....++.++|.++...|++++|+..|++++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 4558888899999999999999999999999999862 334678999999999999999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.|....+++++|.+|...|++++|+..|++++++
T Consensus 100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666788999999999999999999999999987
No 130
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.1e-09 Score=110.58 Aligned_cols=380 Identities=11% Similarity=0.073 Sum_probs=235.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 008016 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM 212 (581)
Q Consensus 133 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (581)
...+-+..|++.+.. +|.+...+..++......++++.+...|++++... |.....|......
T Consensus 47 ~~~d~i~~lE~~l~~----------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 47 DESDVIGKLNDMIEE----------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSL 109 (679)
T ss_dssp CCSCHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
Confidence 345566677777766 78888899999999999999999999999998886 4445566667777
Q ss_pred HHhccC---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH----HHHH----HHHHHHHHHHHHhcCC
Q 008016 213 YSTLEN---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA----KKAV----EIYHRVITILELNRGT 281 (581)
Q Consensus 213 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~ 281 (581)
-...|+ ++.+..+|++++.... .+.+ ...|..........++. +++. ..|++|+... |.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~---~~~s---v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v----G~ 179 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKEL---GNND---LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC----AI 179 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSS---CCCC---HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT----TT
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh----Cc
Confidence 778888 9999999999987420 0122 23444444433333332 3333 5666666543 22
Q ss_pred CChhhHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHH--------------HHHHcCCCC-------------
Q 008016 282 ESADLVLPLFSLGSLFI---------KEGKAVDAESVFSRILKI--------------YTKVYGEND------------- 325 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~--------------~~~~~~~~~------------- 325 (581)
-++....+|........ .+++.+.+..+|++++.+ +++..+...
T Consensus 180 ~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~ 259 (679)
T 4e6h_A 180 FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYM 259 (679)
T ss_dssp TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHH
Confidence 01222223332222211 233455556666665531 000000000
Q ss_pred --------------------------------c-------hHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
Q 008016 326 --------------------------------G-------RVGMAMCSLAHAKCANG-------NAEEAVELYKKALRVI 359 (581)
Q Consensus 326 --------------------------------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~ 359 (581)
| .....|......-...+ ..+.....|++++..+
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~ 339 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV 339 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc
Confidence 0 01111111111111110 0122344566665542
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR-ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (581)
+. ...+|...+..+...|+.++|. .+|++++... |.....+...+.+....|++++|..+|
T Consensus 340 -------p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 340 -------CF---APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp -------TT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 22 2456678888899999999997 9999998653 333456778899999999999999999
Q ss_pred HHHHHHHHHhcC---CCCc-----------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 008016 439 RICLDIMTKTVG---PDDQ-----------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 504 (581)
Q Consensus 439 ~~al~~~~~~~~---~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (581)
++++........ +..| ....++...+......|+.+.|..+|.+|++.. ++.. ...+..
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~~~~---~~lyi~ 474 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----KLVT---PDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----GGSC---THHHHH
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCC---hHHHHH
Confidence 999986421110 0012 234467777888888999999999999997641 1111 244556
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 505 LVSIQTRLGE-DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 505 la~~~~~~g~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
.+.+....++ .+ .|...|+++++.+ +..+ ..+...+......|+.+.|..+|++++...+
T Consensus 475 ~A~lE~~~~~d~e-~Ar~ife~~Lk~~-----p~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 475 NAYIEYHISKDTK-TACKVLELGLKYF-----ATDG---EYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSCCH-HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHC-----CCch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 6666666665 77 9999999999865 2334 3455667788889999999999999987654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=1.4e-12 Score=121.85 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=133.0
Q ss_pred HcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHH
Q 008016 174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT 246 (581)
Q Consensus 174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~ 246 (581)
..+++++|+..++++.... |..+.++..+|.++...|++++|+..|++++.+....... ..+....
T Consensus 125 ~L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 3456666766665544432 6777889999999999999999999999999875321000 0123468
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
++.++|.+|...|++++|+..+++++++ .|....+++.+|.+|...|++++|+..|++++++ .|
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence 8999999999999999999999999998 5667889999999999999999999999999987 45
Q ss_pred hHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIK 360 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 360 (581)
....++..++.++...|++++| ...|++++....
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567889999999999999999 557777776543
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.39 E-value=1.2e-12 Score=122.18 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=134.0
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--------Ccch
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL 201 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~ 201 (581)
..+++++|+..++++++. .|..+.++..+|.++...|++++|+..|++++.+...... ..+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~----------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 194 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE----------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194 (336)
T ss_dssp EEEEEECCCCGGGCCHHH----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence 345677788877777765 6778899999999999999999999999999988632110 0123
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
...++.++|.++...|++++|+..|++++.+. |....+++.+|.+|...|++++|+..|++++++
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------- 259 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL------- 259 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 35788999999999999999999999999862 234678999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIY 317 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 317 (581)
.|....++..++.++...|++++| ...|.+++...
T Consensus 260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556678899999999999999999 45677766554
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.38 E-value=1e-11 Score=100.51 Aligned_cols=104 Identities=16% Similarity=-0.003 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
..|.....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 84 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--- 84 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 34777889999999999999999999999999987 5667888999999999999999999999999987
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
+|....++.++|.++...|++++|+..|++++++.
T Consensus 85 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455778999999999999999999999999984
No 134
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.38 E-value=3.9e-10 Score=102.47 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 008016 120 ELFNEVKSMIMMGNKN-DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLLDMM 188 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~ 188 (581)
.+........+.|+++ +|+.++.+++.. +|....+++..+.+....|. +++++.+++.+
T Consensus 31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 31 SATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 3555556667888887 789999999977 88889999999988877765 56666677666
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-HHHHH
Q 008016 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAV 265 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~ 265 (581)
+... |....+|+..+.++...|+ +++++.++.++++. +|....+|...+.+....|. +++++
T Consensus 101 L~~~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 101 LRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhC-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 5543 6666789999999999884 89999999999985 24457789999999999998 69999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
+++.++++. +|....+++..+.++... +.++++++++.+++.. +|....+
T Consensus 166 ~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~Sa 229 (331)
T 3dss_A 166 AFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSA 229 (331)
T ss_dssp HHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHH
T ss_pred HHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHH
Confidence 999999987 677788999999988877 4588899999999886 4566677
Q ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH---HHcCChHHHHHHHH
Q 008016 332 MCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL---HIVGRGQEGRELLE 397 (581)
Q Consensus 332 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~ 397 (581)
++.+..++... +.++++++.+++++++ .|+.... +..++.+. ...|..++...++.
T Consensus 230 W~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------~pd~~w~---l~~~~~~~~~~~~~~~~~~~~~~l~ 299 (331)
T 3dss_A 230 WFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------EPENKWC---LLTIILLMRALDPLLYEKETLQYFS 299 (331)
T ss_dssp HHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------CTTCHHH---HHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------CcccchH---HHHHHHHHHhhcccccHHHHHHHHH
Confidence 76666555554 3577888888888876 4554332 22233222 23567778888888
Q ss_pred HHHHH
Q 008016 398 ECLLI 402 (581)
Q Consensus 398 ~al~~ 402 (581)
+.+++
T Consensus 300 ~l~~~ 304 (331)
T 3dss_A 300 TLKAV 304 (331)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88776
No 135
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=3.7e-11 Score=95.76 Aligned_cols=131 Identities=21% Similarity=0.355 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325 (581)
Q Consensus 246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 325 (581)
.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|..++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 35778999999999999999999999886 3445678889999999999999999999999875 2
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
|....++..+|.++...|++++|+.++++++.. .+.. ..++..+|.++...|++++|..++++++..
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 334567889999999999999999999999886 2222 345678999999999999999999998875
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=1.3e-11 Score=99.91 Aligned_cols=109 Identities=14% Similarity=-0.011 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449 (581)
Q Consensus 370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (581)
+.....+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----- 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 444667789999999999999999999999886 3445678899999999999999999999999986
Q ss_pred CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499 (581)
Q Consensus 450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 499 (581)
+|....++..+|.++...|++++|+..|++++++. |++|...
T Consensus 85 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 126 (148)
T 2vgx_A 85 ---DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFX 126 (148)
T ss_dssp ---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGH
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcch
Confidence 45556788999999999999999999999999876 5666543
No 137
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=3.3e-11 Score=96.01 Aligned_cols=130 Identities=22% Similarity=0.423 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (581)
+++.+|.++...|++++|+.++++++... ++ ...++..+|.++...|++++|+.++++++.. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----Cc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence 57889999999999999999999998752 22 2567888999999999999999999999887 34
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....++..+|.++...|++++|...+++++.. .|....++..+|.++...|++++|..++++++..
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 45678889999999999999999999999876 2334567888999999999999999999999876
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=7.4e-11 Score=97.93 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
..+..+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 35677899999999999999999999999987 4556788999999999999999999999999986
Q ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.|....++..+|.++...|++++|+.++++++.. .|..... .....++..+...|++++|+..+.++..+
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3445678899999999999999999999999987 2333332 23355666688899999999999998887
Q ss_pred HHHh
Q 008016 403 TEKY 406 (581)
Q Consensus 403 ~~~~ 406 (581)
....
T Consensus 147 ~~~~ 150 (166)
T 1a17_A 147 VDSL 150 (166)
T ss_dssp HHHC
T ss_pred hccc
Confidence 6543
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=7.8e-11 Score=92.59 Aligned_cols=122 Identities=12% Similarity=0.038 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
..+..+..+|..+...|++++|+..|++++... |....++.++|.++...|++++|+..+++++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 345678999999999999999999999999863 223678999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC 340 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 340 (581)
.|....++..+|.++...|++++|+..|++++++.... .+.|....+...++.+..
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence 56668899999999999999999999999999986443 223455566666665543
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=8.8e-11 Score=92.27 Aligned_cols=102 Identities=15% Similarity=-0.019 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
.+..+..+|..+...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4677889999999999999999999999998 5666789999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
+|....++..+|.++...|++++|+..+++++++..+
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 4555788999999999999999999999999998643
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=9.6e-11 Score=97.24 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG 280 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 280 (581)
..+..+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..++++++.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 345678899999999999999999999999862 223678899999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
.|....++..+|.++...|++++|..+++++++.. ++++ .......++..+...|++++|+..+.++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 45567889999999999999999999999999862 2222 223335566668889999999999999988876
Q ss_pred h
Q 008016 361 D 361 (581)
Q Consensus 361 ~ 361 (581)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 5
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.30 E-value=1.3e-10 Score=92.12 Aligned_cols=117 Identities=18% Similarity=0.086 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
.+..+...|..+...|+|++|+..|++++++....... ..|....+|.++|.++..+|++++|+..++++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35668899999999999999999999999996431110 01224559999999999999999999999999998665
Q ss_pred HcCCCCchHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 320 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 320 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
. ++-+|....+| +++|.++..+|++++|+..|++++++...
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 34567788888 99999999999999999999999999765
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.30 E-value=2.2e-11 Score=106.00 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
..++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+..+++++.. .
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 3467899999999999999999998842 1 2568999999999999999999999999988 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 355 (581)
|....++..+|.++...|++++|+..|+++++...... ....+....++.++|.++...|++++|+..++++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56678999999999999999999999999998632110 0023456789999999999999999999999999
Q ss_pred HHH
Q 008016 356 LRV 358 (581)
Q Consensus 356 l~~ 358 (581)
+++
T Consensus 148 l~~ 150 (213)
T 1hh8_A 148 TSM 150 (213)
T ss_dssp HTT
T ss_pred HHc
Confidence 886
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=7.9e-12 Score=113.58 Aligned_cols=194 Identities=12% Similarity=0.022 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
+..+..+|..+...|++++|+..|++++.. .|....++.++|.+|...|++++|+..+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 467888999999999999999999999998 5566789999999999999999999999999875
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
+|....++.++|.++...|++++|+..|++++++..... ..-... +...+ .. .++..+.. ...
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~---~~~~~--~~------~~~~~~~~----~~~ 130 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDD---IPSAL--RI------AKKKRWNS----IEE 130 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSH---HHHHH--HH------HHHHHHHH----HHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHH---HHHHH--HH------HHHHHHHH----HHH
Confidence 456678899999999999999999999999999866420 000111 11111 11 11111111 111
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA 483 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 483 (581)
......+.. ...++.++ .|++++|++.++++++. +|........++.++... +.+++|.++|.++
T Consensus 131 -~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 131 -RRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp -TCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112233333 33344443 68999999999988773 344445556666666665 7788898888887
Q ss_pred HH
Q 008016 484 LY 485 (581)
Q Consensus 484 ~~ 485 (581)
.+
T Consensus 197 ~~ 198 (281)
T 2c2l_A 197 DE 198 (281)
T ss_dssp SC
T ss_pred hc
Confidence 55
No 145
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.29 E-value=6.2e-11 Score=103.11 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
...++.+|..+...|++++|+..|++++. + ...++..+|.++...|++++|+..++++++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45578899999999999999999998741 1 3568999999999999999999999999986
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
.|....++.++|.++...|++++|+..++++++....... .....+....++.++|.++...|++++|+..+++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455688999999999999999999999999986432100 0002234457789999999999999999999999
Q ss_pred HHHH
Q 008016 399 CLLI 402 (581)
Q Consensus 399 al~~ 402 (581)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9876
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=1.3e-11 Score=105.99 Aligned_cols=166 Identities=12% Similarity=-0.001 Sum_probs=114.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369 (581)
Q Consensus 290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 369 (581)
....+......|++++|.+.+...... .+..+..+..+|..+...|++++|+.+|++++.+.... ++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~ 74 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEW 74 (198)
T ss_dssp ---------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTC
T ss_pred ccchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----ccc
Confidence 344566667778888887777655432 23467788899999999999999999999999864321 111
Q ss_pred h----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 370 S----------IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 370 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
. ....++.++|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+..|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0 11367789999999999999999999999987 24456788999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEA 483 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 483 (581)
+++.+ .|....++..++.++...++..++. ..+.+.
T Consensus 147 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 147 KAASL--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 4555678888999988888777766 334333
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=1.3e-11 Score=106.03 Aligned_cols=160 Identities=12% Similarity=0.060 Sum_probs=113.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC------
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT------ 240 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 240 (581)
..+......|+++++.+.++.... ..+..+..+..+|..+...|++++|+..|++++.+........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81 (198)
T ss_dssp -------------CCCSGGGCCHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 334455556777777666654222 2245566788999999999999999999999998643210000
Q ss_pred --CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016 241 --SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 241 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 318 (581)
......++.++|.++...|++++|+.++++++++ .|....++..+|.++...|++++|+..|++++++
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 151 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence 0012478999999999999999999999999998 5566789999999999999999999999999987
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 349 (581)
.|....++..++.++...++..++.
T Consensus 152 ------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 ------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888898888888777766
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-10 Score=92.65 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=105.9
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
...+.....+..+|..+...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 4456777889999999999999999999999998742 223678999999999999999999999999987
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 344 (581)
.|....++..+|.++...|++++|+.+++++++. .|....++..++.++...|+
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 4556788999999999999999999999999986 34555678888888877664
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=1.8e-10 Score=91.27 Aligned_cols=120 Identities=8% Similarity=0.027 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAG--NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS 194 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 194 (581)
....+...|..++..|++++|+..|+++++..+...... ...|..+.++.++|.++..+|++++|+..+++++.++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345588999999999999999999999999843310000 112335669999999999999999999999999998666
Q ss_pred cCCCcchHHHHH----HHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016 195 LKDDEPLLDAIL----LHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (581)
Q Consensus 195 ~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (581)
.++-.|....+| ++.|.++...|++++|+..|++++++....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 566678888888 999999999999999999999999987653
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.25 E-value=3.2e-10 Score=89.59 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
..+.....+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 34567888999999999999999999999999987 4455778999999999999999999999999986
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 389 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 389 (581)
.|....++..+|.++...|++++|+.++++++.. .|+. ...+..++.++...|++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-------DPDN---ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------Cccc---hHHHHHHHHHHHHHhcC
Confidence 3344678899999999999999999999999987 2333 34567899999888875
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-10 Score=91.98 Aligned_cols=123 Identities=12% Similarity=-0.020 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
..+.....+..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 34566888999999999999999999999999876 4555788999999999999999999999999986
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 388 (581)
.|....++..+|.++...|++++|+.++++++... +.. ..++..++.++...|+
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------SSC---KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------GGG---THHHHHHHHHHHHHTC
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHhcC
Confidence 34456788999999999999999999999999872 222 3456788888887764
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.24 E-value=4.3e-10 Score=90.36 Aligned_cols=105 Identities=14% Similarity=0.015 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
..|.....++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 35677888999999999999999999999999987 5667888999999999999999999999999987
Q ss_pred HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
+|....++.++|.++...|++++|+..|++++++..
T Consensus 82 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 -----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344456788999999999999999999999999854
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.24 E-value=4.6e-10 Score=90.16 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
.+.....+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3444567789999999999999999999999886 3445678899999999999999999999999985
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
+|....++..+|.++...|++++|+..|++++++.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45556788999999999999999999999999876
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.24 E-value=2e-10 Score=94.85 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC---CC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (581)
...+..+...|..++..|++++|+..|.+++.+...... +. .+....++.++|.+|...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 455677899999999999999999999999998654321 11 34567889999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+++.+ +|....+++.+|.+|...|++++|+..|++++++
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99998 5677889999999999999999999999999987
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.23 E-value=8.8e-09 Score=93.60 Aligned_cols=236 Identities=11% Similarity=-0.020 Sum_probs=171.2
Q ss_pred HHcCChH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHHHHHHcCCCC
Q 008016 173 VYIGDLK-FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----------YEKSMLVYQRVINVLESRYGKTS 241 (581)
Q Consensus 173 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 241 (581)
...|+++ +|+.++..++.+. |....+|+..+.+....|. +++++.++..++.. +
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~ 104 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 104 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------C
Confidence 4567776 7888888876654 6666778888888877665 57777888777764 2
Q ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 008016 242 ILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYT 318 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 318 (581)
|....+|...+.++...| .+++++.++.++++. +|....++...+.+....|. ++++++++.++++.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-- 174 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 174 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 344778999999999988 489999999999987 67778899999999999999 69999999999976
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 008016 319 KVYGENDGRVGMAMCSLAHAKCAN--------------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384 (581)
Q Consensus 319 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~ 384 (581)
+|....++++.+.++... +.++++++++.+++.+ .|++. .+++.+..++.
T Consensus 175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-------~P~d~---SaW~Y~r~ll~ 238 (331)
T 3dss_A 175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------DPNDQ---SAWFYHRWLLG 238 (331)
T ss_dssp ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-------STTCH---HHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHH
Confidence 567778899999888776 4588999999999887 34443 33444444444
Q ss_pred Hc-----------CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 385 IV-----------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 385 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
.. +.++++++.+++++++. ++. ..++..++.+. ...|..++...++.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~-----pd~---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------ 304 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQELE-----PEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV------ 304 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH------
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhhC-----ccc---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh------
Confidence 33 34677777777777662 333 23333333322 2357788888899888875
Q ss_pred CCCcchHHHHHHHHH
Q 008016 451 PDDQSISFPMLHLGI 465 (581)
Q Consensus 451 ~~~~~~~~~~~~la~ 465 (581)
+|....-|..++.
T Consensus 305 --Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 305 --DPMRAAYLDDLRS 317 (331)
T ss_dssp --CGGGHHHHHHHHH
T ss_pred --CcchhhHHHHHHH
Confidence 5665555555543
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.23 E-value=2.3e-10 Score=90.42 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=105.9
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
..+.....+..+|..+...|++++|+..+++++... ++ ...++..+|.++...|++++|+..+++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 446677788999999999999999999999999862 22 3668899999999999999999999999987
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA 345 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 345 (581)
.|....++..+|.++...|++++|..+++++++. .|....++..++.++...|++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 4455778999999999999999999999999986 334456788899999888765
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=3.2e-10 Score=93.79 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
.+..+..+..+|.++...|++++|+..|++++++ .|....++.++|.+|...|++++|+..|++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 3456788999999999999999999999999998 5666889999999999999999999999999987
Q ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
+|....++.++|.++...|++++|+..|++++++.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45567889999999999999999999999999984
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=4.3e-09 Score=96.02 Aligned_cols=243 Identities=9% Similarity=-0.077 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHc
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~ 321 (581)
....++..+..+....+..++|+..+.+++.+ +|....+++..+.++...| .+++++.++.+++..
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 44555555666666677778999999999998 7778899999999999999 599999999999864
Q ss_pred CCCCchHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH--------H
Q 008016 322 GENDGRVGMAMCSLAHAKCAN-G-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--------E 391 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~ 391 (581)
+|....+++..+.++... + ++++++.++.++++. .+.+ ..++...+.++...|.++ +
T Consensus 119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-------dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-------DPKN---YHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-------CTTC---HHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhccccccchhhHHH
Confidence 677788999999999887 7 899999999998864 2222 456778888888888777 8
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN-------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
++++++++++. ++....++...+.++...++ ++++++++++++.+ +|....++..+.
T Consensus 186 ELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr 249 (349)
T 3q7a_A 186 ELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLR 249 (349)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 88888888876 45566789999999988887 78999999999885 577777888888
Q ss_pred HHHHHcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016 465 ITLYHLNRDKE------------AEK-LVLEALYIREIAFGKD-----SLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 526 (581)
Q Consensus 465 ~~~~~~g~~~~------------A~~-~~~~a~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a 526 (581)
.++...|+... .+. .+....+......+.. .+....++..|+.+|...|+.+ +|.++++..
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~-~a~~~~~~l 328 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD-DAAKVFEKL 328 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Confidence 88888776410 000 0111111121122211 1345578899999999999888 888888776
Q ss_pred HH
Q 008016 527 LR 528 (581)
Q Consensus 527 ~~ 528 (581)
.+
T Consensus 329 ~~ 330 (349)
T 3q7a_A 329 SS 330 (349)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=4.4e-09 Score=95.97 Aligned_cols=258 Identities=11% Similarity=-0.005 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHc
Q 008016 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRY 237 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~ 237 (581)
++...++..+.......+..++|+.++++++.+. |....+|+..+.++...| .+++++.++.+++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----- 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----- 118 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence 3344444444444555566678999999988775 666678899999999999 599999999999874
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHH
Q 008016 238 GKTSILLVTSLLGMAKVLGSI-G-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAE 307 (581)
Q Consensus 238 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~ 307 (581)
+|....+++..+.++... + ++++++.++.++++. +|....++...+.+....|.++ +++
T Consensus 119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 334477888899998887 7 899999999988865 6777889999999998888887 899
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380 (581)
Q Consensus 308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la 380 (581)
++++++++. ++....+++..+.++...++ ++++++++.+++.+ .|++ ..+++.+.
T Consensus 188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-------~P~n---~SaW~Ylr 249 (349)
T 3q7a_A 188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-------IPHN---VSAWNYLR 249 (349)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-------CCCC---HHHHHHHH
Confidence 999988876 56777899999999999887 78999999999887 3333 44567777
Q ss_pred HHHHHcCChHH------------HHH-HHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016 381 ELLHIVGRGQE------------GRE-LLEECLLITEKYKGK-----EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442 (581)
Q Consensus 381 ~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (581)
.++...|+... .+. .+......+....+. ..+....++..|+.+|...|+.++|.++++...
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78887776510 000 011111122111111 113455688889999999999999999998875
Q ss_pred HHHHHhcCCCCcchHHHHHHHH
Q 008016 443 DIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~la 464 (581)
+ .-+|.....+...+
T Consensus 330 ~-------~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 330 S-------EYDQMRAGYWEFRR 344 (349)
T ss_dssp H-------TTCGGGHHHHHHHH
T ss_pred h-------hhChHHHHHHHHHH
Confidence 4 23555555554443
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.21 E-value=6.1e-12 Score=123.23 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
+..+..+..+|..+...|++++|+..|+++++. .|....++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 344566778899999999999999999999998 5666889999999999999999999999999986
Q ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH--HHHcCChHHHHHHHH--
Q 008016 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLE-- 397 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-- 397 (581)
+|....++.++|.+|...|++++|+..+++++++ .|+... ++..++.+ +...|++++|++.++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCTT---HHHHHHHHHHHHHHHHHCCC------C
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4566788999999999999999999999999987 233322 34566666 888999999999998
Q ss_pred ---------HHHHHHHHhcCCCChH---HHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHh
Q 008016 398 ---------ECLLITEKYKGKEHPS---FVTHLLNLAASYSRSKN--FVEAERLLRICLDIMTKT 448 (581)
Q Consensus 398 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~ 448 (581)
+++.+.....+...+. ....+..+...+...+. ...+..++.++.++..+.
T Consensus 137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 5554433333333332 22334444555555454 345555777877776653
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=1.4e-11 Score=111.84 Aligned_cols=194 Identities=11% Similarity=-0.044 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408 (581)
Q Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 408 (581)
+..+..+|..+...|++++|+..|++++.. .|+. ..++.++|.++...|++++|+..+++++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-------NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL------ 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 567888999999999999999999999987 3333 456789999999999999999999998865
Q ss_pred CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488 (581)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 488 (581)
.|....++..+|.+|...|++++|+..|++++++.......-. . .....+ .. .++..+... .
T Consensus 68 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~--~~~~~~--~~------~~~~~~~~~-----~ 129 (281)
T 2c2l_A 68 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-D--DIPSAL--RI------AKKKRWNSI-----E 129 (281)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-S--HHHHHH--HH------HHHHHHHHH-----H
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-H--HHHHHH--HH------HHHHHHHHH-----H
Confidence 3555678999999999999999999999999987543211000 1 111111 11 111111111 1
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChhhhHHHHHH
Q 008016 489 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKR 567 (581)
Q Consensus 489 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 567 (581)
....+..+.. ...++.+. .|+++ +|++.++++++. .|+.......++.++... +++++|.++|.+
T Consensus 130 ~~~~~~~~~i---~~~l~~l~--~~~~~-~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 130 ERRIHQESEL---HSYLTRLI--AAERE-RELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HTCCCCCCHH---HHHHHHHH--HHHHH-HHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHH---HHHHHHHH--HHHHH-HHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122344433 33344443 46666 777777777652 234445556666666665 778899999987
Q ss_pred HHH
Q 008016 568 LSN 570 (581)
Q Consensus 568 a~~ 570 (581)
+.+
T Consensus 196 a~~ 198 (281)
T 2c2l_A 196 VDE 198 (281)
T ss_dssp SSC
T ss_pred hhc
Confidence 654
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.20 E-value=2.5e-10 Score=94.42 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=93.5
Q ss_pred CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL 277 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 277 (581)
..+..+..+..+|.++...|++++|+.+|++++.+. |....++..+|.+|...|++++|+..+++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 446677889999999999999999999999999863 223678999999999999999999999999998
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.|....++..+|.+|...|++++|+..|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56668899999999999999999999999999874
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.20 E-value=1.6e-10 Score=97.06 Aligned_cols=122 Identities=13% Similarity=0.189 Sum_probs=101.5
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 292 (581)
+...|++++|+..+++++... ++ ...++..+|.+|...|++++|+.+|+++++.. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-----PQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-----CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 346789999999999998852 22 35788999999999999999999999999883 445678899
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 293 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 293 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
+|.+ +...|++ ++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 9999999999986 3455678899999999999999999999999986
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.20 E-value=1.1e-11 Score=121.40 Aligned_cols=180 Identities=11% Similarity=-0.007 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 363 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 363 (581)
+..+..+..+|..+...|++++|+..|+++++. +|....++.++|.+|...|++++|+..+++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 344566778899999999999999999999987 4556789999999999999999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHHccCHHHHHHHHH--
Q 008016 364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR-- 439 (581)
Q Consensus 364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-- 439 (581)
.|+. ..++.++|.+|..+|++++|++.+++++++. +++ ..++..++.+ +..+|++++|++.++
T Consensus 70 --~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 70 --DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred --CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3333 4567899999999999999999999999873 222 3356667777 888999999999999
Q ss_pred ---------HHHHHHHHhcCCCCcc---hHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHH
Q 008016 440 ---------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI 489 (581)
Q Consensus 440 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~ 489 (581)
+++++.....++..+. ....+..+...+...+... ++..++.++.++...
T Consensus 137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 5555433333333332 2334445555555555544 455577777777654
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=5.5e-10 Score=92.16 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-CCCC-------ChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY-MSLD-------DSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
...+..+...|..++..|++++|+..|.+++.+...... ..+. .+....++.++|.+|...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456778899999999999999999999999998654311 0111 34456788999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH-HHHHHHHHHHHH
Q 008016 398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYH 469 (581)
Q Consensus 398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~ 469 (581)
+++.+ .|....++..+|.+|...|++++|+..|++++.+ +|... .+...++.+...
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence 99987 3555678999999999999999999999999996 34444 344455554443
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.19 E-value=2.8e-11 Score=118.07 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=124.9
Q ss_pred HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--------Ccch
Q 008016 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL 201 (581)
Q Consensus 130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~ 201 (581)
..+++++|+..++.+++. .+..+..+..+|..++..|++++|+..|++++.+...... ..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~----------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 315 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE----------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315 (457)
T ss_dssp EEEEEECCCCGGGSCHHH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 345667788777777665 6778889999999999999999999999999988632110 0123
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 281 (581)
...+++++|.+|...|++++|+..|++++.+. |....+++++|.+|...|++++|+..|++++++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------- 380 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------- 380 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 36788999999999999999999999999863 234788999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESV 309 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~ 309 (581)
.|....++..++.++...+++++|...
T Consensus 381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 381 -NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999999999888753
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.19 E-value=3.7e-11 Score=117.22 Aligned_cols=160 Identities=16% Similarity=0.265 Sum_probs=124.1
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHH
Q 008016 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVTS 247 (581)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~ 247 (581)
.+++++|+..++.+... .|..+..+..+|..++..|++++|+..|++++.+....... ..+....+
T Consensus 247 l~~~~~A~~~~~~~~~~-------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE-------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEECCCCGGGSCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH-------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 44556666655554333 26677889999999999999999999999999975331000 01234688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
+.++|.+|...|++++|+..+++++++ .|....+++++|.+|..+|++++|+..|++++++ +|.
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~ 383 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ 383 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence 999999999999999999999999998 5667889999999999999999999999999975 456
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVE-LYKKALR 357 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 357 (581)
...++..++.++...|++++|.. .+.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788999999999999988764 3444433
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.19 E-value=2.4e-10 Score=96.02 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=102.3
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 008016 128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL 207 (581)
Q Consensus 128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (581)
+...|++++|+..++++++. .|....++..+|.++...|++++|+..+++++... |....++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYA 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHH----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 45678999999999999987 67778899999999999999999999999998876 33345788
Q ss_pred HHHHH-HHhccCH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 208 HMGSM-YSTLENY--EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 208 ~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
.+|.+ +...|++ ++|+..+++++... + ....++..+|.++...|++++|+..++++++.
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALD-----S---NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999 8899999 99999999999862 2 23567899999999999999999999999987
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.16 E-value=2.3e-09 Score=84.44 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
.++.+|..+...|++++|+..++++++. .++++....++..+|.++...|++++|+..|++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4678899999999999999999999987 3445555688999999999999999999999999986 24555
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....++..+|.++...|++++|+..+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999986
No 170
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.15 E-value=1.7e-09 Score=84.45 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
...++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 3677889999999999999999999999987 3445678899999999999999999999999876
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 387 (581)
.|....++..+|.++...|++++|..++++++.. .|+. ..++..++.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHHhcc
Confidence 2344567889999999999999999999999886 2333 334567777776554
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.15 E-value=2.5e-09 Score=84.23 Aligned_cols=116 Identities=20% Similarity=0.159 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455 (581)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 455 (581)
+..+|..+...|++++|+..+++++... ++++....++..+|.++...|++++|+..+++++.. .++++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~ 74 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK 74 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence 4678999999999999999999998763 555666678999999999999999999999999985 344444
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 506 (581)
...++..+|.++...|++++|+..+++++... |+++....+...+.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 57789999999999999999999999998864 56554444443333
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4.1e-09 Score=94.13 Aligned_cols=262 Identities=13% Similarity=0.036 Sum_probs=168.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016 124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD 203 (581)
Q Consensus 124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 203 (581)
.++..+-.|+|..++.-..+ . .+..+. .....+.++|..+|++... ..+.|..
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~---~-------~~~~~~--~~~~~~~Rs~iAlg~~~~~--------------~~~~~~~- 71 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEK---F-------SKVTDN--TLLFYKAKTLLALGQYQSQ--------------DPTSKLG- 71 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHT---S-------SCCCCH--HHHHHHHHHHHHTTCCCCC--------------CSSSTTH-
T ss_pred HHHHHHHhhHHHHHHHHHHh---c-------CccchH--HHHHHHHHHHHHcCCCccC--------------CCCCHHH-
Confidence 34556778999988873322 1 122233 3556677888888888742 1222332
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
.+...++..+ . ++ |+..+++.+.. +... ..++..+|.++...|++++|++.+.+++.. + ..
T Consensus 72 ~a~~~la~~~-~-~~---a~~~l~~l~~~-----~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~ 132 (310)
T 3mv2_B 72 KVLDLYVQFL-D-TK---NIEELENLLKD-----KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EA 132 (310)
T ss_dssp HHHHHHHHHH-T-TT---CCHHHHHTTTT-----SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CS
T ss_pred HHHHHHHHHh-c-cc---HHHHHHHHHhc-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CC
Confidence 2334444443 2 22 66666665431 1122 233468999999999999999999998653 1 12
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 008016 284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------RVGMAMCSLAHAKCANG--NAEEAVELYKKA 355 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~a 355 (581)
+....++..++.++..+|+.+.|.+.++++.+. +| +.......-+.+....| ++.+|..+|+++
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 467888999999999999999999999988765 23 22223333344455555 999999999997
Q ss_pred HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHccCHHH
Q 008016 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVE 433 (581)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 433 (581)
.+. .++ ......+.+ ++..+|++++|...++.+++.....-..+ .|....++.+++.+....|+ +
T Consensus 205 ~~~-------~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 205 SQT-------FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp HTT-------SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred HHh-------CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 543 222 111122233 89999999999999997766543210000 24566788888888888898 8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Q 008016 434 AERLLRICLDIMTKTVGPDDQSIS 457 (581)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~~~~ 457 (581)
|.++++++.+. .|+||.+.
T Consensus 272 a~~l~~qL~~~-----~P~hp~i~ 290 (310)
T 3mv2_B 272 TEDLTNQLVKL-----DHEHAFIK 290 (310)
T ss_dssp THHHHHHHHHT-----TCCCHHHH
T ss_pred HHHHHHHHHHh-----CCCChHHH
Confidence 88998888773 45565443
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=9.6e-09 Score=91.77 Aligned_cols=259 Identities=14% Similarity=0.075 Sum_probs=166.1
Q ss_pred HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016 171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 250 (581)
Q Consensus 171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 250 (581)
-.+..|+|..++.-..+ +.+..+.. ....+.++|..+|++.... .+.|. ..+...
T Consensus 22 n~fy~G~yq~~i~e~~~-------~~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~ 76 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEK-------FSKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL 76 (310)
T ss_dssp HHHTTTCHHHHTHHHHT-------SSCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred HHHHhhHHHHHHHHHHh-------cCccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence 34567999998873322 22333332 4456678888889887421 12221 223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330 (581)
Q Consensus 251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 330 (581)
++..+. ++ |+..+++.++. ..+. ...+..+|.++...|++++|++++.+.+.. ...+....
T Consensus 77 la~~~~--~~---a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~le 137 (310)
T 3mv2_B 77 YVQFLD--TK---NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTE 137 (310)
T ss_dssp HHHHHT--TT---CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHH
T ss_pred HHHHhc--cc---HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHH
Confidence 444432 22 56666554432 1122 344568999999999999999999998652 11246788
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHHHHH
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAEL--LHIVG--RGQEGRELLEECLLITEK 405 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~--~~~~g--~~~~A~~~~~~al~~~~~ 405 (581)
++..++.++...|+.+.|.+.++++.+. .++. ..--.+...++.. ....| ++.+|..+|+++...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~-------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--- 207 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNA-------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--- 207 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---
Confidence 8899999999999999999999998775 2210 0001122344433 55556 999999999996542
Q ss_pred hcCCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 406 YKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKLVL 481 (581)
Q Consensus 406 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (581)
.|. ....+.+ ++..+|++++|...++.+++..-.....+ .|....++.+++.+....|+ +|.+++.
T Consensus 208 -----~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 208 -----FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN 277 (310)
T ss_dssp -----SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH
T ss_pred -----CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH
Confidence 232 2223333 89999999999999997665431110000 25567788888888888997 8888988
Q ss_pred HHHHHHHHHcCCCChhH
Q 008016 482 EALYIREIAFGKDSLPV 498 (581)
Q Consensus 482 ~a~~~~~~~~~~~~~~~ 498 (581)
++.+.. |+||.+
T Consensus 278 qL~~~~-----P~hp~i 289 (310)
T 3mv2_B 278 QLVKLD-----HEHAFI 289 (310)
T ss_dssp HHHHTT-----CCCHHH
T ss_pred HHHHhC-----CCChHH
Confidence 887754 788744
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.13 E-value=1.9e-09 Score=85.94 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
.+..+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3678899999999999999999999999998 4556789999999999999999999999999986
Q ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
.|....++..+|.++...|++++|+..+++++.+...
T Consensus 73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3456678999999999999999999999999998765
No 175
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=2.5e-09 Score=83.49 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452 (581)
Q Consensus 373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (581)
...+..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 4567889999999999999999999998762 333467889999999999999999999999885
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG 513 (581)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 513 (581)
.|....++..+|.++...|++++|..+++++++.. |++ ..++..++.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHhcc
Confidence 34456688899999999999999999999998753 333 366778888776554
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=5.2e-10 Score=86.74 Aligned_cols=96 Identities=15% Similarity=0.033 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
.+..+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 4678899999999999999999999998 6677889999999999999999999999999987 45
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....++..+|.++...|++++|+..++++++.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55678899999999999999999999999876
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.10 E-value=7e-10 Score=86.02 Aligned_cols=97 Identities=10% Similarity=-0.069 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
.+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|+..|++++++ +|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3578999999999999999999999987 3555678999999999999999999999999996 56
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
....++..+|.++...|++++|+..+++++++.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 667789999999999999999999999998754
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=1.9e-09 Score=85.98 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF 491 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 491 (581)
+.....+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++.+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---- 73 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---- 73 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence 344678899999999999999999999999985 45667789999999999999999999999999853
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016 492 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 532 (581)
Q Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~ 532 (581)
|....++..+|.++...|+++ +|+..+++++++...
T Consensus 74 ----p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 ----GQSVKAHFFLGQCQLEMESYD-EAIANLQRAYSLAKE 109 (137)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHChh
Confidence 344578999999999999999 999999999998654
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=1.9e-09 Score=101.61 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
.+..+..+|..+...|++++|+..|++++.+..... ....+....++.++|.+|...|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345688899999999999999999999998654420 012456788999999999999999999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016 274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350 (581)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 350 (581)
+ .|....+++.+|.+|...|++++|+..|++++++ .|....++..++.++...++++++..
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 5667889999999999999999999999999987 34445677888888888888777654
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=3.6e-09 Score=83.47 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016 160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239 (581)
Q Consensus 160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 239 (581)
..+..+..+|..+...|++++|+..++++.... |....++..+|.++...|++++|+.++++++...... ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 456788999999999999999999999988764 3335678899999999999999999999999986542 23
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
+.+....++..+|.++...|++++|+..++++++.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444788999999999999999999999999987
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=1.5e-08 Score=79.83 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016 286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM 365 (581)
Q Consensus 286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 365 (581)
.+..+..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 71 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--- 71 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc---
Confidence 4677899999999999999999999999986 24446788999999999999999999999999987642
Q ss_pred CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
.++......++..+|.++...|++++|+.++++++..
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444678899999999999999999999999886
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3e-09 Score=86.06 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
+.....+..+|..+...|++++|+.+|++++.. .++++....++..+|.++...|++++|+..+++++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----- 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence 455677899999999999999999999999874 3344445788999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.|....++..+|.++...|++++|..+++++++.
T Consensus 95 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 ---DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4445788999999999999999999999999986
No 183
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=7e-09 Score=79.97 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
+..+..+|..+...|++++|+..+++++.. .|....++..+|.++...|++++|...++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999987 4455778999999999999999999999999986
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
.|....++..+|.++...|++++|...++++++.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3445678899999999999999999999999875
No 184
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.6e-09 Score=85.62 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=98.3
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE 404 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 404 (581)
.+.....+..+|..+...|++++|+.+|+++++. .++++....++.++|.++...|++++|+..+++++...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 95 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD- 95 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-
Confidence 3456788999999999999999999999999874 45554456788999999999999999999999998862
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016 405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (581)
Q Consensus 405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (581)
|....++..+|.++...|++++|+.++++++.+ .|....++..++.+.
T Consensus 96 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 -------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS 143 (148)
T ss_dssp -------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred -------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 333568889999999999999999999999985 344445555555544
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.04 E-value=2.7e-09 Score=100.57 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016 244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315 (581)
Q Consensus 244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 315 (581)
.+..+..+|..+...|++++|+..|++++++..... ....+....++.++|.+|..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356688899999999999999999999998654320 012566788999999999999999999999999997
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394 (581)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 394 (581)
+ +|....++..+|.+|...|++++|+..|++++++ .|++ ..++..++.++...++.+++..
T Consensus 302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-------~P~~---~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APED---KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4566788999999999999999999999999987 3333 3355778888888888777654
No 186
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.03 E-value=4.9e-09 Score=80.86 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
+..+..+|..+...|++++|+..+++++... ++ ...++..+|.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 3567889999999999999999999998862 22 3568899999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 338 (581)
.|....++..+|.++...|++++|...++++++. .|....++..++.+
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNM 115 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHh
Confidence 4556778999999999999999999999999874 33444555555554
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.99 E-value=1.6e-09 Score=101.07 Aligned_cols=144 Identities=17% Similarity=0.089 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--CCC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--GKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHR 270 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 270 (581)
+..+..+..+|..++..|++++|+..|++++.+..... ... ......++.++|.+|...|++++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566788999999999999999999999998632210 000 000114889999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH-HHHCCCHHHHH
Q 008016 271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEAV 349 (581)
Q Consensus 271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~ 349 (581)
++++ +|....+++++|.+|...|++++|+..|++++++ .|....++..++.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 5667889999999999999999999999999876 34455667777777 34556778888
Q ss_pred HHHHHHHHHH
Q 008016 350 ELYKKALRVI 359 (581)
Q Consensus 350 ~~~~~al~~~ 359 (581)
..|.+++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998888763
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=2.3e-09 Score=82.64 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=75.7
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG 464 (581)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 464 (581)
..|++++|+.+|++++.. +.+.|....++..+|.+|...|++++|+..+++++++ .|....++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999875 1234778889999999999999999999999999985 466677899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 008016 465 ITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=1.9e-09 Score=83.20 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=76.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 008016 215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294 (581)
Q Consensus 215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 294 (581)
..|++++|+.+|++++.+ +.++|....++..+|.+|...|++++|+..++++++. .|....++..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999874 1225778899999999999999999999999999998 556688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 008016 295 SLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
.++...|++++|+..+++++...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=6.5e-09 Score=103.54 Aligned_cols=187 Identities=10% Similarity=-0.028 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 008016 120 ELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLLDMM 188 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~ 188 (581)
.+........+.|++ ++|++.+++++.. +|+...+++..+.++...|+ +++++..++++
T Consensus 30 ~~~~~~~~~~~~~~~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~ 99 (567)
T 1dce_A 30 SATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 99 (567)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH
Confidence 344455555667776 5679999999988 89999999999999999988 89999999998
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHH
Q 008016 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAV 265 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~ 265 (581)
+... |....+|+..++++...| ++++++.++.++++.. +....+|...+.+....| .+++++
T Consensus 100 l~~~-------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 100 LRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHhC-------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHH
Confidence 7764 666778999999999999 7799999999999962 344788999999999999 899999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
+++.++++. +|....+|+..+.++... +.++++++++.+++.+ +|....+
T Consensus 165 ~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~sa 228 (567)
T 1dce_A 165 AFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSA 228 (567)
T ss_dssp HHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHH
T ss_pred HHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccH
Confidence 999988875 677788999999998875 5678999999999886 4555678
Q ss_pred HHHHHHHHHHCCCHHH
Q 008016 332 MCSLAHAKCANGNAEE 347 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~ 347 (581)
|+.++.++...+++++
T Consensus 229 W~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 229 WFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHhcCCCccc
Confidence 8889999988888655
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.97 E-value=1e-09 Score=102.41 Aligned_cols=141 Identities=12% Similarity=-0.000 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH-----------------HHHHHHHHHHHHcCChH
Q 008016 412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-----------------FPMLHLGITLYHLNRDK 474 (581)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~ 474 (581)
+..+..+..+|..+...|++++|+..|++++.+. |... .++.++|.++..+|+++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3455678899999999999999999999999862 2222 37899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-H
Q 008016 475 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL-D 553 (581)
Q Consensus 475 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~ 553 (581)
+|+.++++++++. |....++..+|.++...|+++ +|+..|++++++ .|+...++..++.+. .
T Consensus 248 ~A~~~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~-~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 248 EAIGHCNIVLTEE--------EKNPKALFRRGKAKAELGQMD-SARDDFRKAQKY--------APDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
Confidence 9999999999853 444588999999999999999 999999999875 355667778888874 4
Q ss_pred HcCChhhhHHHHHHHHHHHHHHhh
Q 008016 554 KLGRKEEKFPLKKRLSNLRMKYKQ 577 (581)
Q Consensus 554 ~~g~~~~A~~~~~~a~~l~~~~~~ 577 (581)
..+..+++...|++++...++...
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788999999999988776543
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=3.5e-08 Score=98.29 Aligned_cols=175 Identities=7% Similarity=-0.068 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGENDGRV 328 (581)
Q Consensus 259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~ 328 (581)
...++|++.+.+++.+ +|....+|+..+.++...|+ +++++..++++++. +|..
T Consensus 43 ~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~ 106 (567)
T 1dce_A 43 ELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKS 106 (567)
T ss_dssp CCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred CCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence 3446789999999998 77888999999999999988 99999999999876 6777
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHH
Q 008016 329 GMAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEK 405 (581)
Q Consensus 329 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 405 (581)
..+|...+.++...| ++++++++++++++.. +. ...+|...+.++...| .++++++++.++++.
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--- 173 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--- 173 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------cc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---
Confidence 889999999999999 7799999999999972 22 2567788999999999 899999999888754
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016 406 YKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (581)
Q Consensus 406 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (581)
+|....+|...+.++... +.++++++++.+++.+ +|....+|..++.++...+
T Consensus 174 -----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 174 -----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp -----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCC
T ss_pred -----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCC
Confidence 456667889999888774 6689999999999985 4666678999999998888
Q ss_pred ChHH
Q 008016 472 RDKE 475 (581)
Q Consensus 472 ~~~~ 475 (581)
++++
T Consensus 241 ~~~~ 244 (567)
T 1dce_A 241 PHDV 244 (567)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 8655
No 193
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=2.1e-09 Score=82.05 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 456778999999999999999999999987 3445678999999999999999999999999975
Q ss_pred Cch--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 008016 325 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV 358 (581)
Q Consensus 325 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 358 (581)
.|. ...++..+|.++... |++++|+.++++++..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 234 567899999999999 9999999999998875
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=6e-09 Score=79.51 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
....++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 69 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV------ 69 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 34566789999999999999999999999986 2344677899999999999999999999999986
Q ss_pred CCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 008016 365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLI 402 (581)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 402 (581)
.++ .....++..+|.++... |++++|++++++++..
T Consensus 70 -~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 -IED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -SCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -Ccc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 233 11245678999999999 9999999999998764
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=4.4e-06 Score=81.86 Aligned_cols=367 Identities=10% Similarity=0.026 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHhhcCC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLKD 197 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~ 197 (581)
+..++.+...+-.|+++.+..+|++++.. .| ...++..........++ .+.....|+.++... +.
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~----------~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g~ 80 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKK----------SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---EN 80 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---TT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhcc----------CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---CC
Confidence 44555666666669999999999999863 23 33455544444444443 345666777777654 21
Q ss_pred CcchHHHHHHHHHHHHH----hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------------HhcCC
Q 008016 198 DEPLLDAILLHMGSMYS----TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-------------GSIGR 260 (581)
Q Consensus 198 ~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~ 260 (581)
++....+|......+. .+|+.+.+...|++++.. +.... ...+......- ...+.
T Consensus 81 -d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~--~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 81 -YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSL--SELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp -CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhH--HHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 2222344555544433 356788899999999863 11111 11111111110 11223
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------AVDAESVFSRILKIYTKVYGENDGRVGMA 331 (581)
Q Consensus 261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 331 (581)
+..|...++.+...... .. ...+...... ..++ .+.....|++++... |.....
T Consensus 153 y~~ar~~y~~~~~~~~~----~s---~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~--------p~~~~l 215 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRG----WS---VKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSF--------YYAEEV 215 (493)
T ss_dssp HHHHHHHHHHHHHHHHT----CS---HHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHT--------TTCHHH
T ss_pred HHHHHHHHHHHHHHHhh----cc---HHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcC--------CCCHHH
Confidence 44455555555444321 01 1233332222 2222 334567888877652 333677
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHhcC
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT---EKYKG 408 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 408 (581)
|...+..+...|+.++|...|++++.. .. ...+ +...+.. .+.++. ++...... ....+
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~-------~~~l---~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SD-------GMFL---SLYYGLV----MDEEAV---YGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-------SSHH---HHHHHHH----TTCTHH---HHHHHHHTC-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-------cHHH---HHHHHhh----cchhHH---HHHHHHHHHhhccchh
Confidence 888888899999999999999999986 22 2221 1211211 111221 22222211 00000
Q ss_pred --CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 008016 409 --KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALY 485 (581)
Q Consensus 409 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~ 485 (581)
.........+...+......++.+.|...|+++ .. +. .....+...|.+....+ +.+.|...|+.+++
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 012233456777788888889999999999998 31 11 23345555566655555 69999999999988
Q ss_pred HHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHH
Q 008016 486 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 565 (581)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 565 (581)
.. ++.|. .+...+......|+.+ .|...|+++. .+ ...+......-...|+.+.+...+
T Consensus 349 ~~-----~~~~~---~~~~yid~e~~~~~~~-~aR~l~er~~---------k~---~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 349 KH-----PDSTL---LKEEFFLFLLRIGDEE-NARALFKRLE---------KT---SRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HC-----TTCHH---HHHHHHHHHHHHTCHH-HHHHHHHHSC---------CB---HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HC-----CCCHH---HHHHHHHHHHHcCCHH-HHHHHHHHHH---------HH---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 53 44453 3444566777888888 8888887762 12 345556666667789999999999
Q ss_pred HHHHHHH
Q 008016 566 KRLSNLR 572 (581)
Q Consensus 566 ~~a~~l~ 572 (581)
++++...
T Consensus 408 ~~~~~~~ 414 (493)
T 2uy1_A 408 DQKMDAI 414 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988744
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.80 E-value=1.3e-08 Score=80.44 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHcCCCCc
Q 008016 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
+.+.+++|+..+++++++ +|....++.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999998 677889999999999999876 4999999999987 56
Q ss_pred hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Q 008016 327 RVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRV 358 (581)
Q Consensus 327 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 358 (581)
....+++++|.+|...| ++++|+.+|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 77889999999999875 899999999999997
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.77 E-value=2.1e-08 Score=79.34 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=75.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHHhcCCCCc
Q 008016 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF----------VEAERLLRICLDIMTKTVGPDDQ 454 (581)
Q Consensus 385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 454 (581)
+.+.+++|++.+++++++ .|....++.++|.++...+++ ++|+..|++++++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999887 466677899999999998875 5999999999996 67
Q ss_pred chHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHH
Q 008016 455 SISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIR 487 (581)
Q Consensus 455 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~ 487 (581)
....+++++|.+|..+| ++++|+.+|++|+++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 78889999999999875 8999999999999874
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.74 E-value=1.2e-07 Score=69.03 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 321 (581)
+....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 345778999999999999999999999999987 4555778999999999999999999999999986
Q ss_pred CCCCchHHHHHHHHHHHHHHCC
Q 008016 322 GENDGRVGMAMCSLAHAKCANG 343 (581)
Q Consensus 322 ~~~~~~~~~~~~~la~~~~~~g 343 (581)
+|....++.++|.++...|
T Consensus 73 ---~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ---DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---CTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHhcC
Confidence 3445677888888887654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.1e-08 Score=77.94 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
+..+..+|.++...|++++|+..|+++++. .|....++.++|.++...|++++|+..+++++++. ++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 567889999999999999999999999998 45567889999999999999999999999999752 22
Q ss_pred C---chHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016 325 D---GRVGMAMCSLAHAKCANGNAEEAVELYK 353 (581)
Q Consensus 325 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (581)
+ .....++..+|.++...|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 2 1136778889999988888777665443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.69 E-value=2.4e-07 Score=67.35 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 490 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 490 (581)
.+.....+..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++.
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 73 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--- 73 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence 3456678899999999999999999999999985 35556788999999999999999999999998853
Q ss_pred cCCCChhHHHHHHHHHHHHHHcC
Q 008016 491 FGKDSLPVGEALDCLVSIQTRLG 513 (581)
Q Consensus 491 ~~~~~~~~~~~~~~la~~~~~~g 513 (581)
| ....++..+|.++...|
T Consensus 74 --p---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 --P---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --T---TCHHHHHHHHHHHHHHC
T ss_pred --C---CCHHHHHHHHHHHHhcC
Confidence 3 33467888888887654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.6e-08 Score=75.02 Aligned_cols=95 Identities=11% Similarity=-0.001 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 494 (581)
...+..+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..+++++++. |+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence 457889999999999999999999999985 45567789999999999999999999999998753 33
Q ss_pred Ch---hHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016 495 SL---PVGEALDCLVSIQTRLGEDDTKLLELL 523 (581)
Q Consensus 495 ~~---~~~~~~~~la~~~~~~g~~~~~A~~~~ 523 (581)
++ ....++..++.++...|+.+ +|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 101 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQ-IPVVEV 101 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCC-CCSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHh-hhHhHH
Confidence 31 12577888999999888877 655443
No 202
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.61 E-value=4e-06 Score=82.13 Aligned_cols=168 Identities=8% Similarity=-0.021 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVI 359 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 359 (581)
.+..+-..+.+.|++++|.++|+++.+. +-.| ...+|+.+-.++...+. .++|.++|+++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN------GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 4556678889999999999999998764 1222 34567777777765543 67888888887653
Q ss_pred HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439 (581)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (581)
+..|+ ..+++.+...|.+.|++++|..++++.... .-.|+ ..+|+.+...|.+.|+.++|.++++
T Consensus 100 ----G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 100 ----KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp ----TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHHHHHHHHH
Confidence 23333 235678899999999999999999987543 12233 3578888999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
+..+. +-.|+. .++..|...|.+.|+.++|.++++++.+.
T Consensus 165 ~M~~~------G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 165 HMVES------EVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHT------TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc------CCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 98762 233444 47889999999999999999999987653
No 203
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.60 E-value=1.8e-06 Score=84.60 Aligned_cols=168 Identities=12% Similarity=-0.030 Sum_probs=125.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHHH
Q 008016 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---------NFVEAERLLRICLDIMT 446 (581)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~ 446 (581)
+..+-..+.+.|+.++|+++|+++... .-.|+. .+|+.+..++...+ ..++|.++|++....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-- 99 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN------GVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-- 99 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence 455667889999999999999998764 122332 35666666665443 468888888877652
Q ss_pred HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV 526 (581)
Q Consensus 447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a 526 (581)
+-.|+. .++..+...|.+.|++++|..+++++.+. . -.| ...++..+...|.+.|+.+ +|.+++++.
T Consensus 100 ----G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g---~~P-d~~tyn~lI~~~~~~g~~~-~A~~l~~~M 166 (501)
T 4g26_A 100 ----KVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAF---G---IQP-RLRSYGPALFGFCRKGDAD-KAYEVDAHM 166 (501)
T ss_dssp ----TCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CCC-CHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C---CCC-ccceehHHHHHHHHCCCHH-HHHHHHHHH
Confidence 223444 47889999999999999999999987652 1 122 2367899999999999999 999999887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016 527 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 572 (581)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~ 572 (581)
.+. - -.| ...++..|...|.+.|+.++|.++++++.+..
T Consensus 167 ~~~---G---~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 167 VES---E---VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHT---T---CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred Hhc---C---CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 652 1 122 24678899999999999999999999987653
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=2.3e-07 Score=71.01 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016 220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299 (581)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 299 (581)
++|+..|++++.. . |....++..+|.++...|++++|+..++++++. .|....++..+|.++..
T Consensus 2 ~~a~~~~~~al~~-----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ-----G---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT-----T---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3577788888764 2 223578999999999999999999999999987 45667889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 008016 300 EGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 300 ~g~~~~A~~~~~~al~~~~~ 319 (581)
.|++++|...|++++++...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999987544
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.59 E-value=5.3e-07 Score=71.40 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=93.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS 295 (581)
Q Consensus 216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 295 (581)
.+++++|+.+|+++.+. .++ .+. +|.+|...+.+++|+.+|+++.+. ....++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~-------g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-------NEM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC-------CCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 35788999999999864 121 222 899999999999999999999875 23678999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 008016 296 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV 358 (581)
Q Consensus 296 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 358 (581)
+|.. .+++++|..+|+++.+. ....++.+||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999 89999999999999863 235778999999999 89999999999999875
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.58 E-value=5e-07 Score=69.09 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC
Q 008016 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN 342 (581)
Q Consensus 263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 342 (581)
+|+..|+++++. .|....++..+|.++...|++++|+..|+++++. .|....++..+|.++...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 567778887765 4556789999999999999999999999999986 345567889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 008016 343 GNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 343 g~~~~A~~~~~~al~~~~~ 361 (581)
|++++|+..|++++++...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999998654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.58 E-value=2.7e-07 Score=68.40 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016 242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319 (581)
Q Consensus 242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 319 (581)
|....++..+|.+|...|++++|+..|+++++. .|....++..+|.+|...|++++|+..|++++++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 344678999999999999999999999999998 5566778999999999999999999999999988654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.56 E-value=8.4e-07 Score=65.70 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 361 (581)
+|....++..+|.+|...|++++|+..|+++++. +|....++..+|.+|...|++++|+..+++++++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666788999999999999999999999999987 3455668999999999999999999999999998654
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.55 E-value=5.5e-07 Score=71.31 Aligned_cols=112 Identities=7% Similarity=-0.021 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 508 (581)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 508 (581)
+++++|+.+|+++.+. .++. +. ||.+|...+..++|+++|+++.+. .++ .+...||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~---~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------NSG---NGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHH
Confidence 5789999999999873 2332 22 999999999999999999999773 333 788999999
Q ss_pred HHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHH
Q 008016 509 QTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 509 ~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~ 573 (581)
|.. .++++ +|+.+|+++.+. .+ ..+..+||.+|.. .+++++|+.+|+++.+.+.
T Consensus 67 y~~G~g~~~d~~-~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 67 YENGKYVKKDLR-KAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHCSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCCCccHH-HHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 998 78888 999999999862 23 5678999999999 8999999999999988753
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=6.7e-05 Score=73.49 Aligned_cols=343 Identities=11% Similarity=0.011 Sum_probs=186.4
Q ss_pred HcC-ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016 130 MMG-NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH 208 (581)
Q Consensus 130 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (581)
+.| +.+.|..+|+.++... |. |+++.+..+|++++... |.. .+|..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~----------P~---------------~~~e~~~~iferal~~~-------ps~-~LW~~ 52 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY----------MS---------------KDYRSLESLFGRCLKKS-------YNL-DLWML 52 (493)
T ss_dssp ------CCHHHHHHHHHHHH----------HT---------------TCHHHHHHHHHHHSTTC-------CCH-HHHHH
T ss_pred HcCcchHHHHHHHHHHHHHC----------CC---------------CCHHHHHHHHHHHhccC-------CCH-HHHHH
Confidence 456 4888899999888763 21 78999999999987643 222 23444
Q ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016 209 MGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTES 283 (581)
Q Consensus 209 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 283 (581)
........+ ..+.....|+.++... |.+ +.....|......+. ..|+.+.+...|++++.. +...
T Consensus 53 Y~~f~~~~~~~~~~i~~~fe~al~~v----g~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~ 122 (493)
T 2uy1_A 53 YIEYVRKVSQKKFKLYEVYEFTLGQF----ENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGS 122 (493)
T ss_dssp HHHHHHHHC----CTHHHHHHHHHHS----TTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTT
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHc----CCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhh
Confidence 444333444 2355667778777642 222 222355555555443 346788899999999863 1111
Q ss_pred hhhHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC--CC----
Q 008016 284 ADLVLPLFSLGSLF-------------IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN--GN---- 344 (581)
Q Consensus 284 ~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~---- 344 (581)
....+......- ...+.+..|...++.+...... .. ...+......-... |-
T Consensus 123 --~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s---~~~W~~y~~~E~~~~~~~~~~~ 193 (493)
T 2uy1_A 123 --LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WS---VKNAARLIDLEMENGMKLGGRP 193 (493)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CS---HHHHHHHHHHHHTCTTCCCHHH
T ss_pred --HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----cc---HHHHHHHHHHHhcCCccCcchh
Confidence 111111111111 1122344445555554443221 01 12233322221111 11
Q ss_pred -HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016 345 -AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 423 (581)
Q Consensus 345 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 423 (581)
.+.....|++++... |.. ..+|...+..+...|+.++|..+|++++.. . .+ .. .+...+.
T Consensus 194 ~~~Rv~~~ye~al~~~-------p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P----~~-~~---l~~~y~~ 254 (493)
T 2uy1_A 194 HESRMHFIHNYILDSF-------YYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S----DG-MF---LSLYYGL 254 (493)
T ss_dssp HHHHHHHHHHHHHHHT-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C----CS-SH---HHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C----Cc-HH---HHHHHHh
Confidence 344667888888752 223 456778888999999999999999999986 1 22 21 1222222
Q ss_pred HHHHccCHHHHHHHHHHHHHHH---HHhcC--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016 424 SYSRSKNFVEAERLLRICLDIM---TKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (581)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~---~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (581)
. .+.++. +++..+.. ....+ ...+.....+...+......|+.+.|...|+++ . . +. ..
T Consensus 255 ~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~~--~~ 318 (493)
T 2uy1_A 255 V----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--EG--VG 318 (493)
T ss_dssp H----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--SC--CC
T ss_pred h----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--CC--CC
Confidence 1 111111 22222211 00000 011223356677777777888899999999988 2 1 21 12
Q ss_pred HHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016 499 GEALDCLVSIQTRLG-EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568 (581)
Q Consensus 499 ~~~~~~la~~~~~~g-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 568 (581)
...+...|.+....+ +.+ .|...|+.+++.+ ++.|+. +...+......|+.+.|..+|+++
T Consensus 319 ~~v~i~~A~lE~~~~~d~~-~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHCCChH-HHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566666666 477 9999999998843 344543 344577778899999999888875
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.28 E-value=0.00041 Score=64.41 Aligned_cols=212 Identities=9% Similarity=0.002 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTE 282 (581)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 282 (581)
.+...+|..|...|++++-..++.......... .....+.....+-..+.. -+..+.-++...++++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 357889999999999999888887765544332 223445555566665554 355666677777777766541
Q ss_pred ChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 283 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 283 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
...... .-..+|.+|...|+|.+|...+.+.++.+++. .+.......+..-..+|...+++.++...+.++.....
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222222 34589999999999999999999999887664 33456778888889999999999999999999988865
Q ss_pred hhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016 361 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430 (581)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 430 (581)
.. .+++...+.+...-|.++. ..++|.+|...|-++...+... ..+....+...++.+-...++
T Consensus 171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence 42 3555666777777788888 8999999999999987655432 234333333444444444444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.28 E-value=2.3e-06 Score=63.18 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016 249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327 (581)
Q Consensus 249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 327 (581)
...|..+...|++++|+..++++++. .|.... ++..+|.++...|++++|+..|+++++.. ++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~- 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-----PDSP- 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTST-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcH-
Confidence 45788999999999999999999987 455567 89999999999999999999999999862 2222
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360 (581)
Q Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 360 (581)
.++.+ +.+.++...|+++.....
T Consensus 70 --~~~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 70 --ALQAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp --HHHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred --HHHHH--------HHHHHHHHHHHHHhccCc
Confidence 22221 556777777777766543
No 213
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.25 E-value=0.00066 Score=63.06 Aligned_cols=212 Identities=12% Similarity=0.073 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGE 323 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 323 (581)
-.+...+|..|...|++++-..++.......... ...........+-..+.. -+..+.-.+...++++..+..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 3567789999999999999988887765544332 123344445555555544 355566667777777776532
Q ss_pred CCchHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 324 NDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401 (581)
Q Consensus 324 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 401 (581)
...... .-..+|..|...|+|.+|.+.+.+..+.+++. .+......++..-..+|...+++.++...+.++..
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 222323 34589999999999999999999999887763 34677788888899999999999999999999988
Q ss_pred HHHHhcCCCChHH-HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC
Q 008016 402 ITEKYKGKEHPSF-VTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (581)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (581)
..... ..+|.. +.....-|.++. ..++|.+|..+|-++..-+... ..|....+...++.+-...++
T Consensus 168 ~~~ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 168 TANAI--YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHS--CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred hhccC--CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence 87654 244543 445556677788 8999999999999987654322 233333344444444444455
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.19 E-value=0.00019 Score=62.47 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHcCCCCch-HHHH
Q 008016 260 RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAVDAESVFSRILKIYTKVYGENDGR-VGMA 331 (581)
Q Consensus 260 ~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~ 331 (581)
...+|...+++++++ +|. ...++..+|.+|... |+.++|..+|++++++ +|. ...+
T Consensus 178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence 357788888999888 444 567999999999995 9999999999999998 343 2567
Q ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 008016 332 MCSLAHAKCA-NGNAEEAVELYKKALRV 358 (581)
Q Consensus 332 ~~~la~~~~~-~g~~~~A~~~~~~al~~ 358 (581)
+...|..+.. .|++++|..++++++..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 7788888887 59999999999999986
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.18 E-value=2.1e-05 Score=58.44 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 284 (581)
-++.+|..++..|+|..|+.+|++|+........ .......++..+|.++...|++++|+.++++++++ .|
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P 77 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP 77 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence 3678999999999999999999999987653211 12345688899999999999999999999999988 44
Q ss_pred hhHHHHHHHH
Q 008016 285 DLVLPLFSLG 294 (581)
Q Consensus 285 ~~~~~~~~la 294 (581)
....+..+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 4455555554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.18 E-value=4.2e-06 Score=61.76 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA-ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
+..|..+...|++++|+..|+++++. .|.... ++..+|.++...|++++|+..+++++... ++.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~ 69 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT----------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSP 69 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcH
Confidence 56788889999999999999999887 667777 89999999999999999999999988774 2322
Q ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL 233 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 233 (581)
. ++.. +.+.+++..|+++....
T Consensus 70 ~---~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 70 A---LQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp H---HHHH--------HHHHHHHHHHCCTTHHH
T ss_pred H---HHHH--------HHHHHHHHHHHHHhccC
Confidence 2 2211 56667777777666543
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.09 E-value=0.00012 Score=54.16 Aligned_cols=71 Identities=7% Similarity=-0.038 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
+.-++.+|..++..|+|..|+.+++.++.....-.........++..+|.++...|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34567899999999999999999999988764322223456778899999999999999999999999986
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.03 E-value=0.00013 Score=66.41 Aligned_cols=134 Identities=15% Similarity=0.046 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C-ChHHHHHHHHHHHHHHh
Q 008016 121 LFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G-DLKFVQSLLDMMSGIVD 193 (581)
Q Consensus 121 l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~~~ 193 (581)
++-+|..+...++ +.+|+.+|+++++. +|..+.++..++.+|... + ........+..+.....
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS----------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5556666655544 58999999999998 888888888777777532 2 11122222233332221
Q ss_pred hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT 273 (581)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 273 (581)
. ....|..+.++..++..+...|++++|+..+++++.+. + + ...+..+|.++...|++++|++.|++|+.
T Consensus 269 a-~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 269 T-LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp T-CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 12335555677788888888999999999999999972 1 1 45678899999999999999999999999
Q ss_pred H
Q 008016 274 I 274 (581)
Q Consensus 274 ~ 274 (581)
+
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 8
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.00 E-value=0.00045 Score=63.02 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=91.3
Q ss_pred HHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---C-CHHHHHHHHHHHHHHHHHhc
Q 008016 207 LHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 207 ~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~~ 279 (581)
+..|..+... ..+.+|+.+|++++++ +|..+.++..++.+|... + .......-+.+++.....
T Consensus 200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a-- 269 (372)
T 3ly7_A 200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT-- 269 (372)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--
Confidence 3445555544 4458899999999986 244455555555555421 1 111222333334432211
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....+..+.++..++..+...|++++|+..+++++.+ . +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------n--~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------E--MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------C--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------C--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1234566778888899899899999999999999997 1 23 467788999999999999999999999997
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.91 E-value=7.9e-05 Score=53.57 Aligned_cols=66 Identities=17% Similarity=0.014 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 413 SFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 413 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
.....+..+|.++...++ .++|..++++++.+ +|....++..+|..++..|+|++|+.+++++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344577788888876665 79999999999996 6788889999999999999999999999999874
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.90 E-value=0.00048 Score=54.09 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 409 (581)
.++..-...+...|.|+.|+.....++.+.+... ..-.+.....++..+|.+++..|+|..|...|++++...+.....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556677889999999999999888865420 011244556778899999999999999999999999987643111
Q ss_pred -----------------CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016 410 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467 (581)
Q Consensus 410 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 467 (581)
+.+......+.++.||.+.|++++|+..++.. |....+..+...||.+|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11123367788999999999999999987754 22233445556667655
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.90 E-value=0.00012 Score=52.69 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 284 ADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 284 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
|..+..+..+|.+++..++ .++|...++++++. +|....+...+|..++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456778888999876666 79999999999997 6777889999999999999999999999998875
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.88 E-value=0.0038 Score=54.49 Aligned_cols=84 Identities=11% Similarity=0.113 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHH
Q 008016 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADL-VLPLFS 292 (581)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~ 292 (581)
..+|...+++++++. ..-....++..+|.+|... |+.++|..+|++++++ +|.. ..++..
T Consensus 179 l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~ 244 (301)
T 3u64_A 179 VHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHH
T ss_pred HHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHH
Confidence 457778888888862 2234577899999999994 9999999999999999 4433 677888
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHH
Q 008016 293 LGSLFIK-EGKAVDAESVFSRILKI 316 (581)
Q Consensus 293 la~~~~~-~g~~~~A~~~~~~al~~ 316 (581)
.|..+.. .|++++|..++++++..
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 8999988 59999999999999985
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.88 E-value=0.00052 Score=53.91 Aligned_cols=125 Identities=16% Similarity=0.022 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---
Q 008016 376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP--- 451 (581)
Q Consensus 376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 451 (581)
+..-...+...|.|+.|+.....++.+......... .....++..+|+.+...|+|..|...|++++...+.....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355566788899999999999998888654321112 2356788899999999999999999999999987643211
Q ss_pred --------------CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 008016 452 --------------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ 509 (581)
Q Consensus 452 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 509 (581)
+.+...+..+.++.||...|++++|+..++.. |.......+-..||++|
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11223467788999999999999999888754 22223334555566654
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=0.00011 Score=57.36 Aligned_cols=76 Identities=16% Similarity=-0.011 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 497 PVGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 497 ~~~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
....+.+++|.++.+.++.. .+++.+++..++ .+.| ...++++.||..+.+.|+|++|++++++++++.|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34578899999999988443 166666666665 2335 6789999999999999999999999999999998
Q ss_pred HHhhhh
Q 008016 574 KYKQKV 579 (581)
Q Consensus 574 ~~~~~~ 579 (581)
++.++.
T Consensus 103 ~n~QA~ 108 (152)
T 1pc2_A 103 QNNQAK 108 (152)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 776653
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.0016 Score=50.83 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 285 DLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....+.+++|+++...+ +.++++.+++..++. +.| ....+++++|..+.+.|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45788999999999988 666999999988874 224 56788999999999999999999999999997
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.018 Score=55.24 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=134.7
Q ss_pred chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI 191 (581)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 191 (581)
.++...+...+..+..+. .|+++.|++.+-..-+ ......+.+....++..+...+...|+++...+.+..+...
T Consensus 11 ~D~s~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK----~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 11 KDYSQILKEEFPKIDSLA-QNDCNSALDQLLVLEK----KTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHH----HHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH----HhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444455555555553 3778888875533222 12224455566778888889999999999887766544332
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
. +............+-.........+. ......+.......... ....+.....|+.+|...|++.+|...+
T Consensus 86 r---~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL 160 (445)
T 4b4t_P 86 H---GQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADIL 160 (445)
T ss_dssp T---TTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred h---hhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 2 22112222111111111112222221 11112222111111111 1235677788999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHCCCHHH
Q 008016 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEE 347 (581)
Q Consensus 269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 347 (581)
.....-... ..+.......+.....+|...+++.+|...+.++....... ..++. ....+...|.++...++|.+
T Consensus 161 ~~l~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 161 CELQVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp HHHHHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 887543211 12345567788889999999999999999999986543332 22333 45667788999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008016 348 AVELYKKALRVIKD 361 (581)
Q Consensus 348 A~~~~~~al~~~~~ 361 (581)
|..+|.++......
T Consensus 237 a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 237 VAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887543
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.049 Score=52.19 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=136.1
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016 175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254 (581)
Q Consensus 175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 254 (581)
.|+++.|++.+..+.+..+. ..+.+....++..+..++...|+++...+.+.-... ..+. .+...........-
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~-~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~ 102 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQ-ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHH
Confidence 36788888877665554433 455566667788888999999999887665542211 1121 12212212221211
Q ss_pred HH-hcCCHHHHHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CchHH
Q 008016 255 LG-SIGRAKKAVEIYHRVITILELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVG 329 (581)
Q Consensus 255 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 329 (581)
|. .....+. ......+........+. ....+.....|+.+|...|++.+|...+.....- ..+.. .....
T Consensus 103 ~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kv 177 (445)
T 4b4t_P 103 YLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKI 177 (445)
T ss_dssp HHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHH
T ss_pred HHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHH
Confidence 21 2222221 11112222211111111 1235667788999999999999999999887543 22222 23456
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK 405 (581)
Q Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 405 (581)
..+.....+|...+++.+|..++.++...... ..+.+......+...|.++...++|.+|-.+|.++......
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~---~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFK---NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc---cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 77888899999999999999999998654433 23445566777788999999999999999999998876543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.19 E-value=0.0024 Score=47.81 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
...+.+++|+++.+..+.. ..++++.+.+.++..+.| ...+.++.||..+.+.|+|++|..+++.++++.|...
T Consensus 34 s~~~~F~yAw~Lv~S~~~~-----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYND-----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHH-----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 3477889999999987766 445666666666666656 7789999999999999999999999999999988776
Q ss_pred hhh
Q 008016 577 QKV 579 (581)
Q Consensus 577 ~~~ 579 (581)
++.
T Consensus 109 QA~ 111 (126)
T 1nzn_A 109 QAK 111 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.65 E-value=0.0072 Score=46.35 Aligned_cols=114 Identities=7% Similarity=-0.072 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016 456 ISFPMLHLGITLYHLNRD------KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 456 ~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~ 529 (581)
..+.+..........|+. ++-++.|++|+.............++..+...|.. ...++.+ +|.+.|+.++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d-~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPD-DARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGG-GCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHH-HHHHHHHHHHHH
Confidence 334556666667777888 77777888777643211111222345555556644 5668888 999999999986
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016 530 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV 579 (581)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~ 579 (581)
++ . .+.++...|..-.++|+...|.+.+.+++.++++-.+++
T Consensus 90 hK-----k---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 90 CK-----K---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CT-----T---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hH-----H---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 21 2 277888889999999999999999999999887655543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.60 E-value=0.11 Score=38.91 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 285 DLVLPLFSLGSLFIKEGKAVD---AESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
....+.+++|+++....+... ++.+++..+ ..+.| ..-..++.||..+++.|+|++|..+++..+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456788999999999887766 555554443 34434 57788999999999999999999999999997
No 232
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.011 Score=61.10 Aligned_cols=107 Identities=10% Similarity=-0.023 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008016 454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE 533 (581)
Q Consensus 454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~ 533 (581)
.....++..+...|.+.|+.++|..+|.++.++......|+ ..+|+.|...|++.|+.+ +|.++|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~-eA~~Lf~eM~~~---- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFK-ELVYVLFMVKDA---- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHH-HHHHHHHHHHHT----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHH-HHHHHHHHHHHc----
Confidence 44456788999999999999999999988766544333332 268999999999999999 999999887652
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCh-hhhHHHHHHHHHHH
Q 008016 534 FGSESEEVMLTLKKVVSYLDKLGRK-EEKFPLKKRLSNLR 572 (581)
Q Consensus 534 ~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~l~ 572 (581)
.-.| ...+++.+...+.+.|+. ++|.++|+++..-+
T Consensus 195 --G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 195 --GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp --TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred --CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 1223 357788999999999985 78899999987654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.54 E-value=0.028 Score=43.20 Aligned_cols=103 Identities=10% Similarity=0.098 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCH------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 205 ILLHMGSMYSTLENY------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.|..........|+. ++-++.|++|+..............+..|...|.. ...++.++|.+.|+.++++
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---- 89 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---- 89 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence 445555555666877 77778888888754332222334567777777755 5669999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+...+.++...|..-.++|+...|...+.+++.+
T Consensus 90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2223888889999999999999999999999875
No 234
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.48 E-value=0.038 Score=57.32 Aligned_cols=105 Identities=7% Similarity=-0.128 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 322 (581)
....+++.+...|.+.|+.++|..++.+..+....... | ...+|+.|...|.+.|+.++|.++|+++.+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~---P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---L-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------ 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC---C-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence 45667889999999999999999999876554332222 2 3678999999999999999999999998763
Q ss_pred CCCchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Q 008016 323 ENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRV 358 (581)
Q Consensus 323 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 358 (581)
+-.| ...+|+.+...+.+.|+ .++|.++++++.+.
T Consensus 195 G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2233 45778888889999998 57889999988764
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.17 E-value=0.071 Score=56.15 Aligned_cols=75 Identities=20% Similarity=0.120 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 412 (581)
..++..+...|.+++|....+.. .. .-......|++++|.+..+. .++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------------~~-------~f~~~l~~~~~~~A~~~~~~----------~~~- 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------------DQ-------KFELALKVGQLTLARDLLTD----------ESA- 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------------HH-------HHHHHHHHTCHHHHHHHHTT----------CCC-
T ss_pred HHHHHHHHhCCChHHheecCCCc--------------ch-------heehhhhcCCHHHHHHHHHh----------hCc-
Confidence 45566677888888877654221 11 11245678999988877542 112
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 413 SFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
...|..+|..+.+.|+++.|+.+|.++
T Consensus 681 --~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 --EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 247888999999999999999999886
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.12 E-value=0.013 Score=44.71 Aligned_cols=76 Identities=11% Similarity=-0.087 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 497 PVGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 497 ~~~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
....+.+++|+++.+..+.. .+++.+++..+. .......+.++.||..+.+.|+|++|..+.+.++++.|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34577889999999988765 244444444443 233356788999999999999999999999999998877
Q ss_pred Hhhhh
Q 008016 575 YKQKV 579 (581)
Q Consensus 575 ~~~~~ 579 (581)
..|+.
T Consensus 110 n~QA~ 114 (144)
T 1y8m_A 110 NKQVG 114 (144)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 66543
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.036 Score=52.93 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
.....++..+|..|...|++++|.+.|.++..... +. ......+..+..++...+++..+..++.++......
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-- 200 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---ST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-- 200 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence 33445678899999999999999999999877542 22 335778888999999999999999999999877544
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
+++...........|.++...++|.+|...|..+...
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2333333445556678888999999999999887654
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.08 E-value=0.007 Score=45.44 Aligned_cols=74 Identities=11% Similarity=-0.091 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 499 GEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 499 ~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
..+.+++|+++.+..+.. .+++.+++..+. .+.....+.++.||..+.+.|+|++|..+.+.++++.|...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 377889999999887765 144555544443 23335688999999999999999999999999998887766
Q ss_pred hhh
Q 008016 577 QKV 579 (581)
Q Consensus 577 ~~~ 579 (581)
++.
T Consensus 113 QA~ 115 (134)
T 3o48_A 113 QVG 115 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.072 Score=50.83 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
....++..+|..|...|++++|.+.|.++..... ........+..+..++...+++..+..++.++......
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--- 200 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--- 200 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---
Confidence 3455778899999999999999999999877542 23456778888889999999999999999999877654
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI 402 (581)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 402 (581)
++++..........|.++...++|.+|-..|-.+...
T Consensus 201 -~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 -GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4555555566667788888899999999999887654
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.64 E-value=0.21 Score=52.47 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=50.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 286 (581)
..+...+...|.+++|....+.... ........|++++|.+..+. ...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~-------------------~f~~~l~~~~~~~A~~~~~~-------------~~~ 680 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQ-------------------KFELALKVGQLTLARDLLTD-------------ESA 680 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHH-------------------HHHHHHHHTCHHHHHHHHTT-------------CCC
T ss_pred HHHHHHHHhCCChHHheecCCCcch-------------------heehhhhcCCHHHHHHHHHh-------------hCc
Confidence 4555667778888877765532110 12234568888888776432 112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 287 VLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 287 ~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
...|..+|..+...|+++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 457888999999999999999999876
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.56 E-value=1.3 Score=39.89 Aligned_cols=234 Identities=11% Similarity=0.079 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD 368 (581)
Q Consensus 289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 368 (581)
.+..++.=|.+++++++|++++. .-+..+.+.|++..|.++..-.++.+.+. ....+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~----------------------~GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~ 93 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA----------------------SVSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVD 93 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCC
Confidence 34445555566666666655443 33445566677777777777666666654 11222
Q ss_pred ChHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH--------
Q 008016 369 DSIMENMRIDLAELLHIVGRG-QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR-------- 439 (581)
Q Consensus 369 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------- 439 (581)
. .....+..++.....- ..=..+.++++....+. |.........+..+|..|.+.+++.+|..+|-
T Consensus 94 ~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~ 168 (336)
T 3lpz_A 94 G----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE 168 (336)
T ss_dssp H----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred H----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence 2 2234555555544432 12355777788877663 33222333567789999999999999988862
Q ss_pred HHHHHHHHhcCCCCcchHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-----------------CCChhHHHH
Q 008016 440 ICLDIMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIREIAFG-----------------KDSLPVGEA 501 (581)
Q Consensus 440 ~al~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~ 501 (581)
...++..+......+.....+. .....|...++...|...+....+...+... |..|.. .
T Consensus 169 ~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--N 246 (336)
T 3lpz_A 169 VLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--N 246 (336)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--H
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--H
Confidence 1112222222222233333333 3344567889999999988877765433211 112211 1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016 502 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557 (581)
Q Consensus 502 ~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 557 (581)
+..+...-...+.. ..|....+.+...+..+.|.....+..+|.+|...-.
T Consensus 247 Fl~lLllt~q~~~~-----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~ 297 (336)
T 3lpz_A 247 FISMLLLSVQKGSP-----DLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR 297 (336)
T ss_dssp HHHHHHHHHHSCCH-----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence 22222333344433 3666666666665554433667788899999987643
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.95 E-value=0.9 Score=34.68 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
.....+.+++++++....+.. +++.+++..... ........++.+|..+++.|+|++|..+.+..+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455667888888888877655 566666665442 11245678899999999999999999999999885
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.68 E-value=0.64 Score=43.59 Aligned_cols=105 Identities=12% Similarity=-0.087 Sum_probs=77.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCC---Ch-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016 383 LHIVGRGQEGRELLEECLLITEKYKGKE---HP-----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448 (581)
Q Consensus 383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (581)
....|+.+.|...+++++.++.-.+-.+ .+ ....+...++..+...|++.+|+..+..++..
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~---- 200 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE---- 200 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 3345778888888888877653211000 00 11234556778888999999999999998874
Q ss_pred cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
+|..-..+..+..++...|+..+|+..|+++.+.....+|-+.
T Consensus 201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6777778899999999999999999999999988877776554
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.59 E-value=0.69 Score=34.80 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016 158 GIEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232 (581)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 232 (581)
....+.+.+++|+++....+.. +++.+++..... +.......++.+|..+++.|+|++|..+.+.++++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3445677888888888876554 566666665442 12356778999999999999999999999999875
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.37 E-value=0.72 Score=43.22 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=77.0
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHcCC---CC-----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016 214 STLENYEKSMLVYQRVINVLESRYGK---TS-----------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR 279 (581)
Q Consensus 214 ~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 279 (581)
...|+.+.|...+.+++.+++..+-+ +. .....+...++..+...|++.+++..+..++..
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----- 200 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----- 200 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 34567777777777777664321100 00 123345667788889999999999999998877
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016 280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326 (581)
Q Consensus 280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 326 (581)
+|..-..+..+..++...|+..+|+..|++....+...+|-+..
T Consensus 201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66667788899999999999999999999999887776665443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.03 E-value=4.2 Score=44.43 Aligned_cols=209 Identities=11% Similarity=-0.027 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 397 (581)
Q Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 397 (581)
..+.+|.++...|++++|..+|+++..-.... ....+........|..+..++...|.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34779999999999999999998863211100 00011111223446677888889999999999999
Q ss_pred HHHHHHHHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016 398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476 (581)
Q Consensus 398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 476 (581)
.|++.. +.+.+.. ...+.++=..+...|+|++|...+...-. ......++..|...++..|..++=
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhh
Confidence 998753 2333332 33567777888999999999877654322 122234555555555555554433
Q ss_pred HHH--------HHHHHHHH-HHH-cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC---HHHHH
Q 008016 477 EKL--------VLEALYIR-EIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVML 543 (581)
Q Consensus 477 ~~~--------~~~a~~~~-~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~ 543 (581)
..+ .+..+... +.. .-...|. .+..|-..+...|++...|..+|+++.++....-.... .....
T Consensus 991 ~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~ 1067 (1139)
T 4fhn_B 991 LNYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIE 1067 (1139)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred hCCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHH
Confidence 221 11122111 001 0012232 24445566677788886888899998877653211111 22345
Q ss_pred HHHHHHHHHHHc
Q 008016 544 TLKKVVSYLDKL 555 (581)
Q Consensus 544 ~~~~la~~~~~~ 555 (581)
++..+.+++.-.
T Consensus 1068 ~yL~~INaLslv 1079 (1139)
T 4fhn_B 1068 HYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC
Confidence 566666666555
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.95 E-value=1.1 Score=36.02 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016 297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376 (581)
Q Consensus 297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 376 (581)
....|+++.|.+..+.. .....|..||......|+++-|+.+|.++-+.
T Consensus 15 AL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF------------------ 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred HHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence 45788998888775542 12356888999999999999999999875432
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441 (581)
Q Consensus 377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (581)
..+.-+|...|+.+.-.+..+.+... .. ++....++...|++++++++|.+.
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 23444667777776544433332211 11 112233466778888888887654
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.82 E-value=1.8 Score=44.15 Aligned_cols=123 Identities=7% Similarity=-0.058 Sum_probs=79.5
Q ss_pred CCC-HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH--HHc-CChHHHHHHHHHHHHHHHHhc---CCCC---
Q 008016 342 NGN-AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL--HIV-GRGQEGRELLEECLLITEKYK---GKEH--- 411 (581)
Q Consensus 342 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~~~~~~---~~~~--- 411 (581)
.|+ ++.|+.++++.... .|... ++...+.+. ... .+--+|+.++.++++...... ....
T Consensus 261 t~~~~~~a~~~le~L~~~-------~p~~~----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK-------DPIHD----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH-------CGGGH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred cccHHHHHHHHHHHHHhh-------CCchh----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445 57788888886554 12111 111122221 112 234567788877775432211 1111
Q ss_pred ----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 412 ----PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 483 (581)
Q Consensus 412 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (581)
+.....+...+..+...|+++-|+++.++|+.. .|..-.+|..|+.+|..+|+|+.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122335556688888999999999999999986 5777789999999999999999999877654
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.64 E-value=3.7 Score=36.60 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=86.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhcCCC
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKE 410 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~ 410 (581)
+..-+..+.+.|++..|.++..-.++.+.+. ....+ ......+..++.....-+ .=.++.++++....+. +..
T Consensus 56 L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~~~~----~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~ 129 (312)
T 2wpv_A 56 ISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EVKVD----DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEY 129 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCS----HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSC
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCC
Confidence 3334455566777777777777777776663 11111 112244555554433222 2356777888877665 222
Q ss_pred ChHHHHHHHHHHHHHHHccCHHHHHHHHHH--------HHHHHHHhcCC---CCcchHHHHHH-HHHHHHHcCChHHHHH
Q 008016 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRI--------CLDIMTKTVGP---DDQSISFPMLH-LGITLYHLNRDKEAEK 478 (581)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~~~~~---~~~~~~~~~~~-la~~~~~~g~~~~A~~ 478 (581)
.......+..+|..|...|++.+|..+|-. ..++..+.... ..|.....+.. ....|...|+...|..
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE 209 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 223345678899999999999999987731 11111111111 23333333332 2335667899999999
Q ss_pred HHHHHHHHH
Q 008016 479 LVLEALYIR 487 (581)
Q Consensus 479 ~~~~a~~~~ 487 (581)
.+....+..
T Consensus 210 ~~~~f~~~~ 218 (312)
T 2wpv_A 210 SKDIFLERF 218 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876654
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.95 Score=36.29 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=65.3
Q ss_pred HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008016 172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM 251 (581)
Q Consensus 172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 251 (581)
....|+++.|.++.+.+ .....|..+|......|+++-|+.+|+++-+. ..+
T Consensus 15 AL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L 66 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKL 66 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHH
T ss_pred HHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHH
Confidence 34679999998887653 11235889999999999999999999886432 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
..+|...|+.++-.+.-+.+... + + ++....++...|+++++++.|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~~------g-~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQTR------E-D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT------T-C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHC------c-c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 45566677765544333332221 1 1 222345567788998888887654
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.99 E-value=1.9 Score=41.29 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHhccCHHHHHHHHHHHH--HHHHHHc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHh-cCC
Q 008016 213 YSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEI-------YHRVITILELN-RGT 281 (581)
Q Consensus 213 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~-~~~ 281 (581)
+...+++++|..+-...+ +...... ..-+...+.+|+..+.++...|+....... -...+...+.. +..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 456788888888776554 2221110 011234566777777777777776653321 11222222222 234
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358 (581)
Q Consensus 282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 358 (581)
|....+..++.+-..|...+.++.|..+..++. ++.. +...+..++.+|.++.-+++|.+|.+++..|+..
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455667788899999999999999999988773 1211 2345777888999999999999999999998875
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.54 E-value=5.7 Score=35.71 Aligned_cols=45 Identities=9% Similarity=-0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016 223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268 (581)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 268 (581)
..+..+++....+. +.........+..+|..|.+.+++.+|..+|
T Consensus 115 ~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 115 KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 33555565555442 2211222455667788888888888877776
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.44 E-value=0.92 Score=43.77 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 324 (581)
..++..||.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|.-+|.+++.. .
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~ 216 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------K 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------S
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------C
Confidence 356788999999999999999999999998 6788899999999999999999999999998853 1
Q ss_pred CchHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKC 340 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~ 340 (581)
.| ...+..++...+.
T Consensus 217 ~P-f~~a~~nL~~~f~ 231 (497)
T 1ya0_A 217 FP-FPAASTNLQKALS 231 (497)
T ss_dssp BC-CHHHHHHHHHHHH
T ss_pred CC-ChhHHHHHHHHHH
Confidence 22 3445555555543
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.24 E-value=2.5 Score=40.50 Aligned_cols=143 Identities=10% Similarity=-0.035 Sum_probs=62.2
Q ss_pred HHHHcCChhHHHHHHHHHH--HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH----------HHHHHHHHHHhh
Q 008016 127 SMIMMGNKNDAIDLLQANY--EAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ----------SLLDMMSGIVDS 194 (581)
Q Consensus 127 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~~~~~~~ 194 (581)
.++..+++++|.++....+ +.... +....-+.-.+.+|+..+.++...|+..... ..+-.+.+.. .
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~-~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta-~ 222 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCY-YNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA-S 222 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHC-C
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH-h
Confidence 4577888999988777654 22211 1112224455667777777777777665432 1222222221 2
Q ss_pred cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
+..+....+.+++.+-+.|...+.+++|..+..++.-. .. .......+..++.+|.++..+++|.+|.+++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33455566778889999999999999999999887310 00 0123456788899999999999999999999998865
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.68 E-value=8.8 Score=34.22 Aligned_cols=142 Identities=11% Similarity=-0.032 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP 200 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 200 (581)
.+.+...-+..|+|=+|...++.......+ .....+..+.++.-+..+...|++..|.++...+++.....+. .+
T Consensus 16 ~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~-~~ 90 (312)
T 2wpv_A 16 TLQRFENKIKAGDYYEAHQTLRTIANRYVR----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV-KV 90 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CC
Confidence 333444444445555555544444333222 1112233334444455555666666666665555555443211 11
Q ss_pred hHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016 201 LLDAILLHMGSMYSTLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH 269 (581)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 269 (581)
. ......+..++.....-+ .=..+..+++....+. +.........+..+|..|...|++.+|..+|-
T Consensus 91 ~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 D-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp S-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1 122344444443322111 2245666666665554 22112234667788999999999888887774
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.10 E-value=20 Score=39.14 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHHc--CCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (581)
...+.+|.++...|++++|..+|+++-... .... ..........|..+..++.+.|.++.++++.
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345789999999999999999998863210 0000 0011123456778888999999999999999
Q ss_pred HHHHHHHHhhccCCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 353 KKALRVIKDSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEE 398 (581)
Q Consensus 353 ~~al~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 398 (581)
+.|++.. .++++ .....+.++=..+...|+|++|...+..
T Consensus 923 ~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 923 LLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 9998862 33333 3334677788888999999999877643
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.21 E-value=8 Score=33.36 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=76.4
Q ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 008016 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC 504 (581)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (581)
..+.|+.++|++..+..++ .+|........+..+++-.|+++.|.+.++.+.++. |+....+..|..
T Consensus 7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHH
Confidence 4677999999999988887 467778888889999999999999999999887754 222222222222
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016 505 LVSIQTRLGEDDTKLLELLKRVLRI--QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM 573 (581)
Q Consensus 505 la~~~~~~g~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~ 573 (581)
+..+-. .=.+.+.- ....++ ..+. ......-+......|+.++|..+-.++.+..+
T Consensus 74 lI~aE~-----------~R~~vfaG~~~P~~~g-~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 74 LVKAAQ-----------ARKDFAQGAATAKVLG-ENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHH-----------HHHHHTTSCCCEECCC-SCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHH-----------HHHHHHcCCCCCCCCC-CCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 211110 00011100 000111 2233 33334445666778999999999999987643
No 258
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=88.09 E-value=4.2 Score=27.74 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (581)
+......++..|...-+.|++++|+.+|.++++.+...+.
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3455566888999999999999999999999998777643
No 259
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.34 E-value=22 Score=34.32 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 495 (581)
.++..||++..-...++.|..+|.+|..+ .|.....++.||.+....|+.-+|.-+|.+++.. ..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~~ 217 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------KF 217 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------SB
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------CC
Confidence 46778999999999999999999999996 6888899999999999999999999999988752 22
Q ss_pred hhHHHHHHHHHHHHHH
Q 008016 496 LPVGEALDCLVSIQTR 511 (581)
Q Consensus 496 ~~~~~~~~~la~~~~~ 511 (581)
| ...+..+|...+.+
T Consensus 218 P-f~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 218 P-FPAASTNLQKALSK 232 (497)
T ss_dssp C-CHHHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHH
Confidence 2 23556666666654
No 260
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=87.00 E-value=14 Score=31.74 Aligned_cols=183 Identities=9% Similarity=0.057 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
.++..++..-+.++|++.+....++.+. .....-...-.+.+..+|-. .|....+...+.......+. ..
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~-------~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~--k~ 80 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNS-------LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RG 80 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc--cC
Confidence 3666777778889999999998887763 10011222233444444432 23333444444332222110 01
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc-----C-----CHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI-----G-----RAKKAV 265 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~ 265 (581)
.... ..+..-|. ..=-.+=...+...+.+....+ ..+....+..+-..|..|... | -.+.|.
T Consensus 81 ~~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 81 NEEH----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp CHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred cHHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 1111 11111111 1111223334455555444332 111122333334445544422 2 235788
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKI 316 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 316 (581)
..|+.|.++....+.+.+|.......+.+..|+. .++.++|..+.+++..-
T Consensus 156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8999999999877888898887777777777665 79999998887777654
No 261
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=86.25 E-value=11 Score=29.73 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=99.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH----------HH
Q 008016 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM----------TK 447 (581)
Q Consensus 378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~ 447 (581)
.++.++.-.|.+..++-++.. ..++.+.+.-+.||...+++..|+..++..++-- .+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 466778889999988776543 1233455566779999999999999999987310 00
Q ss_pred hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------HH-HcCCCChhHHHHHHHHHHHHHHcCCChHHHH
Q 008016 448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR------EI-AFGKDSLPVGEALDCLVSIQTRLGEDDTKLL 520 (581)
Q Consensus 448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~ 520 (581)
..--+..+-...+..+|.++.+.|+.+||+.++....... +. ++...-|...+- -.+.. .|+.. --.
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~----~~i~~-~~~~~-i~~ 178 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDK----ENVRQ-TGRRG-IEE 178 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC----------------C-HHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccch----HHHHh-hhhcc-chh
Confidence 1111112233456678999999999999999998876532 00 000000100000 00000 01111 112
Q ss_pred HHHHHHHHHHHHh-------cCCCCHHHHH-HHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 521 ELLKRVLRIQERE-------FGSESEEVML-TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 521 ~~~~~a~~~~~~~-------~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
+++....+.++.+ ....-|.... ....-+..|...|..++...+|....+..|.
T Consensus 179 ~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 179 EYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 2333333333311 0011232222 2234577889999999999999988776553
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.19 E-value=32 Score=35.14 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=80.9
Q ss_pred cCC-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH--HH-hccCHHHHHHHHHHHHHHHHHHc---CCCC------
Q 008016 175 IGD-LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM--YS-TLENYEKSMLVYQRVINVLESRY---GKTS------ 241 (581)
Q Consensus 175 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~------ 241 (581)
.|+ ++.|+.+++++.... |... ++...+.+ .. ...+--+|+....++++...... ...+
T Consensus 261 t~~~~~~a~~~le~L~~~~-------p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKD-------PIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHC-------GGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhC-------Cchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 455 577888888865542 3221 11222221 11 22344567777777765332211 1111
Q ss_pred -HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016 242 -ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313 (581)
Q Consensus 242 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 313 (581)
+.....+...+..+...|+++-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788888999999999999999998 6777899999999999999999999777654
No 263
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.14 E-value=22 Score=33.16 Aligned_cols=133 Identities=10% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc----------CCCcchHHHH
Q 008016 136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL----------KDDEPLLDAI 205 (581)
Q Consensus 136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~ 205 (581)
.-+.+|+..+..+.... +|-. ....+..+.....+.+++.+.++......... .........+
T Consensus 57 ~~~~ly~~fi~~f~~ki-----n~L~--lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i 129 (393)
T 4b4t_O 57 LRLRLYDNFVSKFYDKI-----NQLS--VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLI 129 (393)
T ss_dssp CCHHHHHHHHHHHHHHS-----CSHH--HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----CHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHH
Confidence 34556666655544322 2221 11112345556788999999988764432111 0111234455
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 275 (581)
...++..|...|+.++|...++++-.......+.+.......+...+..|...+++..+....-..+...
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 6778999999999999999999998887776555555667777778888888999988776666655543
No 264
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=85.85 E-value=8.5 Score=28.36 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY 172 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (581)
+......++..|...-..|++++|+.+|..+++.+...+.....++.....+.....-|
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY 72 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY 72 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 44455568888888889999999999999999988776543334444444444444333
No 265
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=85.50 E-value=7 Score=26.89 Aligned_cols=38 Identities=5% Similarity=0.030 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (581)
.....++..|...-..|++++|+.+|.++++.+...+.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34455888888899999999999999999998777653
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.37 E-value=15 Score=31.68 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=76.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHH
Q 008016 126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI 205 (581)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 205 (581)
..+.+.|+.++|++.....++. .|.++.....+...++-.|++++|..-++.+.++. +.....+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~----p~~~~~a~~ 70 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF----PEYLPGASQ 70 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----GGGHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----chhhHHHHH
Confidence 4567889999999988888876 78888888888999999999999999998877764 111111111
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 206 LLHMGSMYSTLENYEKSMLVYQRVINV--LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
|..+-.+ +..=.+.+.- .....+. .+. -.....-+......|+.++|...-.++++...
T Consensus 71 yr~lI~a----------E~~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 71 LRHLVKA----------AQARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHHH----------HHHHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH----------HHHHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1111111 0000000000 0000111 122 22233335556668999999999999988753
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.31 E-value=44 Score=35.07 Aligned_cols=200 Identities=13% Similarity=0.172 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 320 (581)
....++..+|.++...+ .++..++...+.......+. .......+...||.++...++ +++.+.+...+.
T Consensus 411 ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~----- 482 (963)
T 4ady_A 411 IKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY----- 482 (963)
T ss_dssp HHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh-----
Confidence 45667777777776665 36777776666542100010 012223455678888777776 345555555543
Q ss_pred cCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016 321 YGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC 399 (581)
Q Consensus 321 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 399 (581)
.++.. ...+-..+|.++.-.|+-+-...++..+.+. . +..+... ..+|..+...|+.+.+..+.+..
T Consensus 483 --dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~-~e~vrR~-aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 483 --NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------Q-HGNITRG-LAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp --TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------S-CHHHHHH-HHHHHHHHTTTCGGGGHHHHHHH
T ss_pred --cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------C-cHHHHHH-HHHHHHhhhCCChHHHHHHHHHH
Confidence 12222 1245567888888888876655555544321 1 2222222 34444555678877776665543
Q ss_pred HHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016 400 LLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477 (581)
Q Consensus 400 l~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 477 (581)
... .+|. ...+...+|..|...|+...-..++..+.. +..+..+....+|......|+.+.+.
T Consensus 551 ~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--------d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 551 LAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--------DSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp HHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--------CCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 321 2232 223455678889999996555556666654 11122233334444455566654333
No 268
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=83.72 E-value=9.2 Score=26.79 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 008016 113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI 167 (581)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 167 (581)
.+......++..|...-..|++++|+.+|..+++.+...+...+ ++.....+..
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-~~~~k~~l~~ 63 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-ESSKRCVLRT 63 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 33445566888898999999999999999999998877653332 3333334433
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.40 E-value=39 Score=33.73 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=76.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016 336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415 (581)
Q Consensus 336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 415 (581)
+.......+.+.|...+...... ...+..........++.-....+...++...+.+.... .......
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 288 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQA------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLI 288 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhc------cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHHH
Confidence 33344455788888888765442 11233333334444554445555466677777654321 2223322
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485 (581)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 485 (581)
. ...+ .....|+++.|..+++..-. .........+-+|..+...|+.++|..+|+++..
T Consensus 289 e--~~~r-~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 289 E--RRVR-MALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H--HHHH-HHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H--HHHH-HHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 2223 34466999999998866422 2234556778899999999999999999988754
No 270
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=82.20 E-value=23 Score=30.35 Aligned_cols=184 Identities=9% Similarity=0.042 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcC
Q 008016 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLK 196 (581)
Q Consensus 119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 196 (581)
..++..++..-+.++|++.+....++.+. +. ...-...-.+.+..+|-. .|....+...+.......+.
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~-------~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~-- 99 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEA-------RQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHS-- 99 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------cCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhc--
Confidence 34677788888899999999999887763 10 011222333444555533 23333344444332222110
Q ss_pred CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc----------CCHHH
Q 008016 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI----------GRAKK 263 (581)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~~ 263 (581)
....... .+..-|. ..=-.+=...+...+.+....+ ..+....+..+-..|..|... .-.+.
T Consensus 100 k~~~~~~----~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~ 174 (260)
T 2npm_A 100 RNAEDAS----KMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAED 174 (260)
T ss_dssp TTCHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cCcHHHH----HHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence 1111111 1111111 1111223334445555444321 111122233333444444322 22357
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY 317 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 317 (581)
|...|++|.++. ..+.+.+|.......+.+..|+. .++.++|..+.+++.+-.
T Consensus 175 a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 175 ALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888999999999 77788888877777777777665 799999999888877654
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=81.32 E-value=10 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (581)
.....++..|...-+.|++++|+.+|.++++.+...+.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 45556888899999999999999999999998777653
No 272
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.09 E-value=35 Score=31.72 Aligned_cols=108 Identities=6% Similarity=-0.035 Sum_probs=76.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCC---------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 294 GSLFIKEGKAVDAESVFSRILKIYTKVYGE---------NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
..+.....+.++|.+++++........... .......+...++..|...|+.++|..+++++-......
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~-- 160 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKK-- 160 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc--
Confidence 445667788999999988765443332211 112355667788999999999999999999998887763
Q ss_pred CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT 403 (581)
Q Consensus 365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 403 (581)
.+.++......+...+..+...+++..+....-..+...
T Consensus 161 ~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 161 DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 334455666666777888888899988766665555443
No 273
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=80.28 E-value=25 Score=29.40 Aligned_cols=181 Identities=11% Similarity=0.012 Sum_probs=101.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPL 201 (581)
Q Consensus 123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 201 (581)
..|...-+.++|++.+....++.+..... + ..-...-.+.+..+|-. .|....+...+....... .....
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~---~--~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke----k~~~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE---N--SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ----LNNDE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc---C--CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH----cCCHH
Confidence 56777788999999999988887621111 1 11122233444444432 233333433333322211 11111
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHH
Q 008016 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~ 276 (581)
. ..+..-|.. .=-.+-...+...+.+.....-+.....+..+-..|..|. ..|+.+.|...|+.|.++..
T Consensus 82 ~----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 L----VKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 1 112222211 1112334455666666655544433333333444454443 35778999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 008016 277 LNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 277 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 317 (581)
..+.+.+|.......+.+..|. -.++.++|..+.+++..+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 7677778876666666665554 5799999999999987753
No 274
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=79.96 E-value=12 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 008016 116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEA 147 (581)
Q Consensus 116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 147 (581)
..++.++..+..+++.|+|.+|..+|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 56778999999999999999999999998754
No 275
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=78.41 E-value=23 Score=31.74 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 287 VLPLFSLGSLFIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 287 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+.++.+||.+-... .....++.+|.+++...+..+++.|. .-|..+|..+++.+++.+|+..+..+-...+.-
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 34444555443322 11223889999999999888766553 345668889999999999999999988876653
No 276
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=77.99 E-value=30 Score=29.16 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
.++..++..-+.++|++.+...+++.+. + ..-...-.+.+..+|-. .|....+...+.......+..+ +
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~-------~--~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~-~ 76 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGM-------D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKG-G 76 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-------C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcc-------c--CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC-c
Confidence 3566777777889999999988887653 1 12223333444545433 2333333333333222111001 1
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc----------CCHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI----------GRAKKAV 265 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~~A~ 265 (581)
... ..+..-|. ..=-.+=...+...+.+..... ..+....+..+...|..|... .-.+.|.
T Consensus 77 -~~~----~~~i~~yr-~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~ 150 (234)
T 2br9_A 77 -EDK----LKMIREYR-QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSL 150 (234)
T ss_dssp -HHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -hHH----HHHHHHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHH
Confidence 010 11111111 1111222334444554443321 111122233333444444322 2235788
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYT 318 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 318 (581)
..|++|.++....+.+.+|.......+.+..|.. .++.++|..+.+++.+-.-
T Consensus 151 ~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 151 VAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8999999999877888888887777777777665 7999999998888776543
No 277
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=72.31 E-value=20 Score=24.44 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
.......++..|...-..|++++|+.+|.++++.+...+
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334555678888888999999999999999999876654
No 278
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=72.26 E-value=34 Score=31.45 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016 305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364 (581)
Q Consensus 305 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 364 (581)
.+..+|.+++...+..+...+ ..-|..+|-.+.+.+++.+|+..+..+-.....-.+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY 338 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNY 338 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccc
Confidence 467899999999998876655 345667899999999999999999999888766433
No 279
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.81 E-value=1e+02 Score=32.38 Aligned_cols=109 Identities=9% Similarity=0.158 Sum_probs=63.0
Q ss_pred HHHHHHHHHH-HHHHHcCChhHHHHHHHHH--HHHHHHHHhcC---CCChhHHHHHHHHHHHHHHcCChHHH-HHHHHHH
Q 008016 116 RQLLELFNEV-KSMIMMGNKNDAIDLLQAN--YEAVKEQINAG---NKGIEEVAILDIIALGYVYIGDLKFV-QSLLDMM 188 (581)
Q Consensus 116 ~~~~~l~~~~-~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 188 (581)
+.+..++.+. ..+++.|.+.+|+.+.-++ ++...+.++.. ........++..+-.+....-..++- ..+++.+
T Consensus 142 ~rL~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l 221 (963)
T 4ady_A 142 PKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKS 221 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHH
Confidence 4444544444 5678999999999988876 55555555320 11123344444444444333333332 4566667
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 008016 189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI 230 (581)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 230 (581)
.+++.... .|+ +.....+....++.+.+.+.|.+.+
T Consensus 222 ~~Iy~k~~--~~d----y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 222 FDFLMNMP--NCD----YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHSS--SCC----HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCC--chh----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77665542 233 2445566777888888888887754
No 280
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=69.93 E-value=53 Score=28.24 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Q 008016 389 GQEGRELLEECLLITEKYK--GKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDI 444 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 444 (581)
.+.|...|++|.++....+ .+.||-......+.+..|. -.++.++|..+.++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678899999999998877 7889988777777777766 579999999999998875
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.59 E-value=20 Score=24.68 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016 414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450 (581)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (581)
.+..+...+..+...|+|++|+++.+++.....+...
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999999999999887665543
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=65.42 E-value=28 Score=23.31 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN 153 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (581)
+..-...|+.+...|+|+.|+.+|+.+++...+.+.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999998777653
No 283
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.80 E-value=31 Score=23.64 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 332 MCSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
+...|.-.-..|++++|+.+|..+++.+...
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444555678899999999999999987654
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.53 E-value=30 Score=23.48 Aligned_cols=29 Identities=41% Similarity=0.448 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 334 SLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 334 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
..|.-.-..|++++|+.+|.++++.+...
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34445578899999999999999986653
No 285
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=63.41 E-value=65 Score=26.91 Aligned_cols=181 Identities=7% Similarity=-0.061 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016 292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLDDS 370 (581)
Q Consensus 292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 370 (581)
.++.+....++|++...+.+++.+.+... +++ -...-.+.+..+|-. .|....+...+.. .++. ... ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~e--Lt~EERnLLSvAYKNvig~rR~swRiiss----iEqk--ek~-~~ 80 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NSE--FDDEERHLLTLCIKHKISDYRTMTSQVLQ----EQTK--QLN-ND 80 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--SCS-CH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CCC--CCHHHHHHHHHHHHHhhcccHHHHHHHHH----HHHH--HcC-CH
Confidence 56788888999999999999988732111 111 111222233333321 1222222322222 1111 001 11
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHHH
Q 008016 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLDIM 445 (581)
Q Consensus 371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~ 445 (581)
.. ..+..-|... =-.+=..++...+.+..+.+-+.....+..+-..|+.|. ..|+.+.|...|+.|.++.
T Consensus 81 ~~----~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA 155 (227)
T 2o8p_A 81 EL----VKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLL 155 (227)
T ss_dssp HH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 11 1122222111 112223455566666655544332122223333444443 3567899999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 008016 446 TKTVGPDDQSISFPMLHLGITLY-HLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 446 ~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~ 487 (581)
...+.|.||-......+.+..|. -.++.++|..+.++++++.
T Consensus 156 ~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 156 CEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 88788888877766677766665 4799999999999998754
No 286
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=62.25 E-value=75 Score=27.22 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Q 008016 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 446 (581)
.+.|...|++|.++....+.+.+|-......+.+..|.. .++.++|..+.++|.+-..
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467889999999999888889999888777777777665 7999999999988877543
No 287
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.13 E-value=34 Score=23.22 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=22.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|.-.-..|++++|+.+|.++++.+...
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444568899999999999999987653
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.26 E-value=98 Score=27.91 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 374 NMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 374 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
.++.+||.+-...- ....++.+|.+++...+..++..|. ..|..+|..+.+.+++.+|+..+-.+-.....
T Consensus 256 mALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 256 MAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 34455555544321 2223889999999999988876664 35667888999999999999999988876554
No 289
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=59.76 E-value=79 Score=26.66 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Q 008016 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 447 (581)
.+.|...|++|.++....+.+.||.......+.+..|.. .++.++|..+.+++.+-...
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 357888999999999887889999887777777776665 79999999999988775443
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.54 E-value=86 Score=33.34 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHHc--CCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY 352 (581)
Q Consensus 288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (581)
..-+.+|.+|...|++++|..+|++|-.-. .... .+........|..++.++...+-++-++.+.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344789999999999999999998863210 0000 0111123446778888888899999999999
Q ss_pred HHHHHH
Q 008016 353 KKALRV 358 (581)
Q Consensus 353 ~~al~~ 358 (581)
+.|++.
T Consensus 921 ~lAI~~ 926 (950)
T 4gq2_M 921 LLADAS 926 (950)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 888875
No 291
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=58.42 E-value=44 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 333 CSLAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
...|.-.-..|++++|+.+|..+++.+...
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 334444567899999999999999987654
No 292
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=57.47 E-value=1.2e+02 Score=28.00 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016 222 SMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276 (581)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 276 (581)
++.+|.+++...+..+...+ ..-|..+|..+++.+++.+|+..+-.+-...+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~ 349 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 349 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHH
Confidence 77889999998888877665 45577789999999999999999888776643
No 293
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=57.39 E-value=1.2e+02 Score=28.02 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 375 MRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 375 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
++.+||.+-...- ....++.+|++|+...+..+...|. ..|..+|..+.+.+++.+|+..+-.+-.....
T Consensus 264 ALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 264 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 3445555443221 1234678999999999988876663 46777899999999999999999998776554
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.34 E-value=56 Score=25.72 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC
Q 008016 265 VEIYHRVITILELN-RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG 343 (581)
Q Consensus 265 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 343 (581)
..++++++..+... .=.+++....++...+... ++ +.++|...... .-....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcC
Confidence 34566666654321 1135677777777777653 33 55566554432 223346677888899999999
Q ss_pred CHHHHHHHHHHHHHH
Q 008016 344 NAEEAVELYKKALRV 358 (581)
Q Consensus 344 ~~~~A~~~~~~al~~ 358 (581)
++.+|.++|+.+++.
T Consensus 111 ~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999885
No 295
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.10 E-value=91 Score=26.52 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Q 008016 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 447 (581)
.+.|...|++|..+....+.+.||-......+.+..|.. .++.++|..+.+++++-...
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~ 206 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA 206 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999888889999888777777766655 79999999998888775433
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.05 E-value=50 Score=26.00 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428 (581)
Q Consensus 349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 428 (581)
..++++++..+...... .+++....++...+... ++ +..+|..... +..| ...+..|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~Y-knD~RyLklWl~ya~~~---~~---p~~if~~L~~---~~IG---~~~AlfY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRY-YSDPRFLNLWLKLGRLC---NE---PLDMYSYLHN---QGIG---VSLAQFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGG-TTCHHHHHHHHHHHHHC---SC---HHHHHHHHHH---TTSS---TTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhh-ccCHHHHHHHHHHHHhc---CC---HHHHHHHHHH---CCcc---hhhHHHHHHHHHHHHHc
Confidence 44677777776543222 34555566666666542 33 5555554332 2223 33456777889999999
Q ss_pred cCHHHHHHHHHHHHH
Q 008016 429 KNFVEAERLLRICLD 443 (581)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (581)
|++.+|.+.|+.+++
T Consensus 110 ~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQ 124 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999988
No 297
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=56.08 E-value=52 Score=28.26 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHc--CCCChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Q 008016 473 DKEAEKLVLEALYIREIAF--GKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRI 529 (581)
Q Consensus 473 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~~-~g~~~~~A~~~~~~a~~~ 529 (581)
.+.|...|++|.++....+ .|.||-......+.+..|.. .++++ +|..+.++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~-~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPE-GAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 3578889999999998888 89999777777777777665 56676 999998888775
No 298
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.60 E-value=31 Score=32.72 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC------CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HhcCCCChHHHH
Q 008016 345 AEEAVELYKKALRVIKDSNYMSL------DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE--KYKGKEHPSFVT 416 (581)
Q Consensus 345 ~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 416 (581)
.+++...+.++...+........ .........+.+-.+|.+.|+..-+..+++..-.... ..-.-...+.+.
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 45566666666655432100010 1122333446677899999999999888865432210 000011235677
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016 417 HLLNLAASYSRSKNFVEAERLLRICLDI 444 (581)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (581)
.++.+|.++..+++|.+|.+.+..|+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 8889999999999999999999999986
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.03 E-value=20 Score=23.95 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016 545 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578 (581)
Q Consensus 545 ~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~ 578 (581)
...+|+-|...|+|+.|+.+|+.++..-.++-.+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999887776543
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=53.15 E-value=1.4e+02 Score=27.54 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447 (581)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (581)
.++.+|.+++...+..++..|. .-|..+|..+.+.+++.+|+..+-.+-.....
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3788999999999888876664 35677889999999999999999888776544
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.71 E-value=68 Score=23.51 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 338 AKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 338 ~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
-.-..|++++|+.+|..+++.+...
T Consensus 27 e~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 27 QEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHH
Confidence 3456699999999999999987654
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.22 E-value=92 Score=29.54 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHh--hcC-CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-HH
Q 008016 165 LDIIALGYVYIGDLKFVQSLLDMMSGIVD--SLK-DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV-LE 234 (581)
Q Consensus 165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~ 234 (581)
.+.+-.+|++.|+..-+..++........ .+. -.....+...+.+|.++...++|.+|...+..|+.. +.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 35567889999999999999977655321 000 112356677889999999999999999999999987 54
No 303
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=50.64 E-value=1.2e+02 Score=25.99 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
.++..|+..-+.++|++.+...+++.+. + ..-...-.+.+..+|-. .|....+...+....+.-+. .+
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~-------~--~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~--~g 101 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGM-------D--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEN--KG 101 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-------C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-------C--CcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhc--cc
Confidence 4667777788889999999988887653 1 22222333444555533 23333444443332222111 11
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc-----C-----CHHHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI-----G-----RAKKAV 265 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~ 265 (581)
.... ..+..-|.. .=-.+-...+...+.+....+ ..+....+..+-..|..|... | -.+.|.
T Consensus 102 ~~~~----~~~i~~yr~-kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~ 176 (261)
T 3ubw_A 102 GEDK----LKMIREYRQ-MVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSL 176 (261)
T ss_dssp CHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHH
Confidence 1111 111111110 001122334444444443321 111122233333445554332 2 236788
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY 317 (581)
Q Consensus 266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 317 (581)
..|++|.++....+.+.+|.......+.+..|.. .++.++|..+.+++.+-.
T Consensus 177 ~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 177 VAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999998887888899887777777777666 799999998888877654
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=50.38 E-value=1.1e+02 Score=25.69 Aligned_cols=183 Identities=15% Similarity=0.051 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcC-CCC
Q 008016 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYG-END 325 (581)
Q Consensus 248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~ 325 (581)
+..+|.+..+.++|++...+.+++.... ......-.+.|...|-. .|....+...+....+. +..-+ ...
T Consensus 11 ~v~~AklaeqaeRyddM~~~mk~v~~~~-------~eLs~EERnLLSvaYKNvig~rR~swRiissieqk-e~~~~~~~~ 82 (236)
T 3iqu_A 11 LIQKAKLAEQAERYEDMAAFMKGAVEKG-------EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK-SNEEGSEEK 82 (236)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-------CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HhhcCCHHH
Confidence 4556888888999999999998887641 12222333444444432 12222333332221111 10001 111
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-CCCChHHHHHHHHHHHHHHH-----cCC-----hHHHHH
Q 008016 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLDDSIMENMRIDLAELLHI-----VGR-----GQEGRE 394 (581)
Q Consensus 326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~ 394 (581)
.....-+.... -.+=...+...+.+..+..-. ..+.......+-..|..|.- .|+ .+.|..
T Consensus 83 ~~~i~~yr~ki--------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~ 154 (236)
T 3iqu_A 83 GPEVREYREKV--------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS 154 (236)
T ss_dssp CSHHHHHHHHH--------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 11222111110 112233444444444332000 11122222222334554432 343 467889
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Q 008016 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 446 (581)
.|++|.++....+.+.||-......+.+..|. -.++.++|..+.+++.+-..
T Consensus 155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai 207 (236)
T 3iqu_A 155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAM 207 (236)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999988888999988877777777665 56999999999888877443
No 305
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=50.28 E-value=1.2e+02 Score=25.83 Aligned_cols=182 Identities=9% Similarity=0.042 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD 198 (581)
Q Consensus 120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 198 (581)
.++..|+..-+.++|++.+...+++.+. + ..-...-.+.+..+|-. .|....+...+....+.....+.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~-------~--~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~- 75 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTEL-------N--EPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGN- 75 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT-------C--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-------C--CcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCC-
Confidence 3667778888899999999888877653 1 12222333444555533 23333444444332222111111
Q ss_pred cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCC--HHHHHHHHHHHHHHHhc----------CCHHH
Q 008016 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTS--ILLVTSLLGMAKVLGSI----------GRAKK 263 (581)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~--~~~~~~~~~la~~~~~~----------g~~~~ 263 (581)
.... .+..-|. ..=-.+-...+...+.+....+ ..+. ...+..+...|..|... .-.+.
T Consensus 76 ~~~~-----~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~ 149 (248)
T 3uzd_A 76 EKKI-----EMVRAYR-EKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVES 149 (248)
T ss_dssp CC-H-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHH-----HHHHHHH-HHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHH
Confidence 1111 1111111 0001122233444444433321 1122 23333344455554432 12367
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY 317 (581)
Q Consensus 264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 317 (581)
|...|+.|.++....+.+.+|.......+.+..|+. .++.++|..+.+++.+-.
T Consensus 150 a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 150 SEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 889999999998887888898887777777776665 799999998888877654
No 306
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.20 E-value=62 Score=21.98 Aligned_cols=28 Identities=21% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016 335 LAHAKCANGNAEEAVELYKKALRVIKDS 362 (581)
Q Consensus 335 la~~~~~~g~~~~A~~~~~~al~~~~~~ 362 (581)
.|.-.-..|++++|+.+|..+++.+...
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999999976543
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.90 E-value=1.2e+02 Score=25.26 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 008016 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427 (581)
Q Consensus 348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 427 (581)
=..++++++..+...... .+++.+..+|...+.. .+++..+|..... +..| ...+..|...|..+..
T Consensus 96 L~~lLErc~~~F~~~~rY-knD~RyLklWl~Ya~~------~~~p~~if~~L~~---~~IG---~~~AlfYe~wA~~lE~ 162 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLY-KDDVRYLRIWMQYVNY------IDEPVELFSFLAH---HHIG---QESSIFYEEYANYFES 162 (223)
T ss_dssp HHHHHHHHHHHTTTCGGG-TTCHHHHHHHHHHHTT------CSCHHHHHHHHHH---TTCS---TTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccc-cCCHHHHHHHHHHHHc------cCCHHHHHHHHHH---CCcc---hhHHHHHHHHHHHHHH
Confidence 356888888876654222 3345555666655542 2455566665433 2223 3345677788999999
Q ss_pred ccCHHHHHHHHHHHHHH
Q 008016 428 SKNFVEAERLLRICLDI 444 (581)
Q Consensus 428 ~g~~~~A~~~~~~al~~ 444 (581)
.|++.+|...|+.+++.
T Consensus 163 ~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 163 RGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999999884
No 308
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=47.55 E-value=1.4e+02 Score=25.71 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Q 008016 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT 446 (581)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 446 (581)
.+.|...|++|.++. ..+.+.||-......+.+..|.. .++.++|..+.+++.+-..
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 357888999999999 77888999887777777776665 7999999999998887543
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.91 E-value=1.6e+02 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 008016 118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAV 148 (581)
Q Consensus 118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 148 (581)
+...+..|..+...|++.+|+..|+.++...
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 132 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSV 132 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3345688999999999999999999998764
No 310
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=46.65 E-value=54 Score=22.38 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=38.5
Q ss_pred HHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 008016 94 FARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANY 145 (581)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 145 (581)
-.++..++..+........++...+..++.-+..+.+.|++..|+..+.=+-
T Consensus 11 i~kYi~~l~eaL~~i~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 11 TLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp HHHHHHHHHHHGGGEEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666665555566777788889999999999999999988766543
No 311
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.00 E-value=1.2e+02 Score=24.76 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC
Q 008016 394 ELLEECLLITEKYK-GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472 (581)
Q Consensus 394 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 472 (581)
.++++++..+...- -.+++.....|...+..+ ..++..++..+|.-.... .. ....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~---~I---G~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK---GI---GTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH---TS---STTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC---CC---cHHHHHHHHHHHHHHHHcCC
Confidence 57777777653321 145677888888877765 344577888888776552 12 23456677888999999999
Q ss_pred hHHHHHHHHHHHHH
Q 008016 473 DKEAEKLVLEALYI 486 (581)
Q Consensus 473 ~~~A~~~~~~a~~~ 486 (581)
+.+|...|+..++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999873
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.83 E-value=1.4e+02 Score=24.87 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016 393 RELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN 471 (581)
Q Consensus 393 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 471 (581)
..++++++..+... .-.+++....+|...+.. . +++..+|.-... + .-....+..|...|..+...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~---~---~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAH---H---HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHH---T---TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHH---C---CcchhHHHHHHHHHHHHHHcC
Confidence 45677776665322 114567777777777663 2 345566665544 1 122345667788899999999
Q ss_pred ChHHHHHHHHHHHHH
Q 008016 472 RDKEAEKLVLEALYI 486 (581)
Q Consensus 472 ~~~~A~~~~~~a~~~ 486 (581)
++.+|..+|+..++.
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999874
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.86 E-value=1.2e+02 Score=32.26 Aligned_cols=72 Identities=3% Similarity=-0.138 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH-------------HHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016 121 LFNEVKSMIMMGNKNDAIDLLQANYE-------------AVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDM 187 (581)
Q Consensus 121 l~~~~~~~~~~g~~~~A~~~~~~al~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 187 (581)
-+-+|..+...|++++|..+|+++-. .....+............|..+...+...+-++-++.+.+.
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 36789999999999999999997631 11112222222233344667778888888888888888888
Q ss_pred HHHHH
Q 008016 188 MSGIV 192 (581)
Q Consensus 188 ~~~~~ 192 (581)
++...
T Consensus 923 AI~~~ 927 (950)
T 4gq2_M 923 ADASK 927 (950)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 87754
No 314
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.17 E-value=1.4e+02 Score=23.70 Aligned_cols=125 Identities=10% Similarity=-0.055 Sum_probs=80.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016 125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA 204 (581)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 204 (581)
....++-.+++.++-+-.-. -+...+--..++..++-.|.|.++.-.+... ..+.
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L-------------~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------------NT~T 63 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL-------------LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL------------NTCT 63 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------------C----CTHHHHHHHHHHTTCHHHHHHHHHTC------------CBHH
T ss_pred HHHHhhcccccHHHHHHHHH-------------ccCChHHHhhhhhhhhhcchHhHHHHHHHhc------------chHH
Confidence 33445666777765422211 2222233445677788899999998777541 2233
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH--H--------HHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 205 ILLHMGSMYSTLENYEKSMLVYQRVINV--L--------ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
+.+.-+.||....+|..|+..++..+.- . -+.+--+..+.-..+..+|.++...|+-++|+.++......
T Consensus 64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 4566778999999999999999988731 1 00000111223345677899999999999999999887654
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.04 E-value=63 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..+|..+...|++++|..+|-+|+..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457888888999999998888887754
No 316
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=38.80 E-value=1.8e+02 Score=27.53 Aligned_cols=41 Identities=12% Similarity=-0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC
Q 008016 474 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 514 (581)
Q Consensus 474 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 514 (581)
++|++.|+++++..+++...+.+.....+..++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 46788888888888877777777776667777776654443
No 317
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.18 E-value=13 Score=24.51 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016 546 KKVVSYLDKLGRKEEKFPLKKRLSNLRMK 574 (581)
Q Consensus 546 ~~la~~~~~~g~~~~A~~~~~~a~~l~~~ 574 (581)
..+|..+...|++++|..+|-+|+.+++.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34677777777777777777777766543
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.12 E-value=1e+02 Score=24.12 Aligned_cols=66 Identities=5% Similarity=-0.047 Sum_probs=44.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC--cchHHHHH---HHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016 167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD--EPLLDAIL---LHMGSMYSTLENYEKSMLVYQRVINVLES 235 (581)
Q Consensus 167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 235 (581)
.-+..++..|+|-+|-+.++.+-... ... .......+ ...|..+...|+...|..++.+++.....
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34556677799999999998865543 111 12222223 33455567889999999999999987654
No 319
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.84 E-value=28 Score=24.34 Aligned_cols=31 Identities=10% Similarity=-0.107 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016 546 KKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576 (581)
Q Consensus 546 ~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~ 576 (581)
..+|..+...|+++.|..+|-+|+.++..-.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3567777788888888888888887765433
No 320
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.98 E-value=2.3e+02 Score=25.27 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVK 149 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~ 149 (581)
.+...+..|..+...|++++|+..|+.++....
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 334467789999999999999999999987653
No 321
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.12 E-value=1.1e+02 Score=21.21 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
.....-.++..+.+.|+|++||+..+++...+.+..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344467788999999999999999999987766654
No 322
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=34.76 E-value=2.2e+02 Score=24.44 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHH
Q 008016 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~ 487 (581)
.+.|...|+.|.++....+.|.||.......+.+..|.. .++.++|..+.+++++-.
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 357889999999999888889999877777777777665 799999999888876643
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.69 E-value=1e+02 Score=24.19 Aligned_cols=69 Identities=4% Similarity=-0.052 Sum_probs=46.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-SILLVTSL---LGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
+.-+..++..|+|-+|-+.++.+.... .+++ .......+ ...|......|+..-|..++.+++......
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 445667778899999999998776532 1110 12222333 334455667899999999999999986543
No 324
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=34.55 E-value=1.1e+02 Score=23.45 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 500 (581)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 500 (581)
.+...|..|...|+.+.|.-+|-+.+.+...+ +.||+...
T Consensus 44 ~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 44 KIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 45567889999999999999999999988655 78887643
No 325
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.00 E-value=1e+02 Score=21.49 Aligned_cols=64 Identities=20% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016 168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENYEKSMLVYQRVINVLESR 236 (581)
Q Consensus 168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 236 (581)
-|..++..|+|-+|-+.++.+-... ..+...... +....|......|+. |...+.+++......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~---~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKA---TGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3555677799999999998866543 111112222 233445556678888 999999998876543
No 326
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.31 E-value=99 Score=25.39 Aligned_cols=60 Identities=7% Similarity=-0.078 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHH
Q 008016 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 262 (581)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 262 (581)
.+.....+.+|.++...++|.+|...+.+|+..+.. ........++..+.-+-.-.|+..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~---~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR---SSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH---hHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345567888999999999999999999999886432 112233444444544445556654
No 327
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.00 E-value=85 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487 (581)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 487 (581)
..+|..+...|+++.|..+|-+|+..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999998888876
No 328
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.21 E-value=1e+02 Score=29.23 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=29.7
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 317 (581)
......++..+|.+|...|++++|....++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 45566788889999999999999999999998753
No 329
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=28.75 E-value=71 Score=24.56 Aligned_cols=40 Identities=5% Similarity=-0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016 458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV 498 (581)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 498 (581)
..+...|.+|...|+.+.|.-+|-+...+....+ |.||+.
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e~I-pkHpdy 80 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIEKL-PKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTG-GGSTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc-ccCccc
Confidence 3456678999999999999999999988885333 456654
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.03 E-value=1.1e+02 Score=29.10 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
.+....++..+|.+|...|++++|....++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4556678888999999999999999999999875
No 331
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.72 E-value=1e+02 Score=29.32 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359 (581)
Q Consensus 325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 359 (581)
......++..+|.+|...|++++|....++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44566788889999999999999999999998753
No 332
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=24.71 E-value=4.4e+02 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016 415 VTHLLNLAASYSRSKNFVEAERLLRICLD 443 (581)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (581)
...+..|+..+...|++.||--.+..+..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35667899999999999999888765444
No 333
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.64 E-value=1.8e+02 Score=20.21 Aligned_cols=64 Identities=14% Similarity=-0.076 Sum_probs=42.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL--LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278 (581)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 278 (581)
.|..++..|+|-+|-+.++....... .+... ...+....|......|+. |...+.+++......
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~----~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKAT----GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCC----CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 45667788999999999998776421 01112 223333444455567888 999999999877554
No 334
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.91 E-value=2.1e+02 Score=20.81 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016 115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI 152 (581)
Q Consensus 115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~ 152 (581)
-...-.++..|...-..|+.+.|+.+|++.+..+..-+
T Consensus 19 h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl 56 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGI 56 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 34444577777777778999999999999988776654
No 335
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.63 E-value=5.5e+02 Score=25.51 Aligned_cols=128 Identities=16% Similarity=0.073 Sum_probs=70.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE 500 (581)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 500 (581)
++.......+.+.|...+....... .-+..........++.-....+...++...+.+... ...+...
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 287 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQSTSL-- 287 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCHHH--
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCChHH--
Confidence 3444445567888888877654310 111122222333444444444535566666665432 1222222
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016 501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN 570 (581)
Q Consensus 501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 570 (581)
....+....+.|++. .|...+.+.-. .........+.+|..+...|+.++|..+|+++..
T Consensus 288 -~e~~~r~Alr~~d~~-~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 288 -IERRVRMALGTGDRR-GLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -HHHHHHHHHHHTCHH-HHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHCCCHH-HHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 222333344568887 77666654321 1223456678888888889999999888888754
No 336
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.98 E-value=3.1e+02 Score=22.37 Aligned_cols=59 Identities=14% Similarity=-0.071 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Q 008016 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304 (581)
Q Consensus 243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 304 (581)
..+...+.+|.++...++|.+|.+.+.+|+...... .......++..|.-+-.-.|+..
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 567778999999999999999999999999874321 12223334444444445566654
No 337
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.77 E-value=1.3e+02 Score=28.68 Aligned_cols=34 Identities=15% Similarity=-0.069 Sum_probs=28.8
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486 (581)
Q Consensus 453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 486 (581)
......++..+|++|...|++++|..+.++++..
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4455567788999999999999999999999875
No 338
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=21.23 E-value=1.8e+02 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHH
Q 008016 115 ERQLLELFNEVKSMIMM---GNKNDAIDLLQANYEAVKEQ 151 (581)
Q Consensus 115 ~~~~~~l~~~~~~~~~~---g~~~~A~~~~~~al~~~~~~ 151 (581)
-+..-.++..|...-.. |+.++|+.+|++.+..+..-
T Consensus 13 h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~G 52 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKG 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhh
Confidence 34444567777766666 89999999999988765543
No 339
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.18 E-value=2e+02 Score=19.57 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITI 274 (581)
Q Consensus 245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 274 (581)
++....-|.-++..++|.+|..+++++...
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 455666677888999999999999999876
No 340
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=20.99 E-value=1.8e+02 Score=19.86 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 008016 112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQAN 144 (581)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 144 (581)
.++...+..++.-+..+.+.|++..|+..+.=+
T Consensus 33 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 33 EAVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344456667888888899999999888766644
No 341
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.96 E-value=3.8e+02 Score=22.59 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHh
Q 008016 473 DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQERE 533 (581)
Q Consensus 473 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~~A~~~~~~a~~~~~~~ 533 (581)
.+.|...|++|.++....+.|.||-......+.+..|.. .++++ +|..+.++|+.-.-..
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~-~Ac~lAk~Afd~Ai~e 209 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPE-EAISLAKTTFDEAMAD 209 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHH
Confidence 357888999999999888999999877766777766665 46676 9988888887654433
No 342
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.37 E-value=1.3e+02 Score=28.79 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=29.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316 (581)
Q Consensus 283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 316 (581)
......++..+|.+|...|++++|....++++..
T Consensus 198 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 198 YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4455678888999999999999999999998864
Done!