Citrus Sinensis ID: 008017

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Secondary Structure (PSIPRED)
ccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccEEEEcccEEcccccEEEEEcccccccHHHHHHHHccccccccHccccccccccEEEEccccccccccHHHHHcccccHHHHEEEccccccccccccccccEEHcHHHHHHHcccccccEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHEEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKMMKGLLVEENMSnltsasgevtassgsrvetgtnfyaqhsfsstneatppskkkrslpgnpginfslfNFIFFQFWGLIdfvlfesdpdaevialspkslMATNRFLCEICNkgfqrdqnlqlhrrghnlpwklkqrtnkverkkvyvcpeptcvhhdpsralgdltgikkhfsrkhgekkwkcekcskkyavQSDWKAhskicgtreykcdcgklfsrrdsfiTHRAFCDVLAEESartitvnplfspsqqqpnssathmlnfpshhhhqlqSQGLQALQLQAVkiednnqqhhippwlacpssidlssqlfsgnifsrsllhnenqsaspspnpnstsfapfeppgttgsqhtSATALLQKAAQMGatmstqpsalpapvlrvpvphqthhmpagsastagaagsssglglssredlasgfvhnnlssfgnkaaaaanpaYMEQFAAsttttttgpgtapsllhdmmmssfsctngfdgssssfddalngilnpkgygdfhhaqlsrnnhetrdnngggaggsnaggsdgltrdflglktfphshrdfvniagldqinpsssstfgpqnqnprtwqg
Flexible Loop (DISEMBL)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQhsfsstneatppskKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQnlqlhrrghnlpwklkqrtnkverkkvyvcpeptcvhhdpsralgdlTGIKKHfsrkhgekkwkcekcskkyavqsdwkahskicgtreykcdCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQInpsssstfgpqnqnprtwqg
Low Complexity Region (SEG)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGinfslfnfiffqfWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGekkwkcekcskkYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPshhhhqlqsqglqalqlqaVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQsaspspnpnstsfapfEPPGTTGSQHTSATALLQKAAQMGATMSTQpsalpapvlrvpvpHQTHHMPagsastagaagsssglglssREDLASGFVHNNLSSFGNKaaaaaNPAYMEQFAasttttttgpgtapsLLHDMMMSSFSCTNgfdgssssfddALNGILNPKGYGDFHHAQLSRNNHETRdnngggaggsnaggsdgLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Disordered region (IsUnstruct)
***************************************************************GINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN*************************************************HHIPPWLACPSSIDLSSQLFSGNIF*****************************************************************************************************************************************************************************GIL****************************************RDFLGLKTFPHSHRDFVNIAGL***********************
Disordered Region (DISOPRED)
***********************************************************PGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN*******************************************************************************************************************LLQKAAQ**********************************************************************************************************************************************************************LTRDFLGLKTFPHSHRDFVNIAGLDQI********************
Disordered Region (DISEMBL)
MKMMKGLLVEENMSNLT************RVETGTNFYAQHSF***************LPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK*************EKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFS*********ATHMLNFP***********LQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHN*************TSFAPFE***********ATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQT**********************SSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPS*****************
Disordered Region (DISPRO)
*********************************************************SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFS*SQ***********NF****************************QHHIPPWLACP**************************************************************QMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMS*********GSSSSFDDALNGILNPKGY********************************GLTRDFLGLKTFPHSHRDFVNIAGLDQIN*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKMMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.285	0.328	0.748	6e-85
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.542	0.675	0.460	4e-82
Q700D2	503	Zinc finger protein JACKD	no	no	0.297	0.343	0.702	4e-81
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.239	0.278	0.333	4e-20
Q943I6	522	Zinc finger protein STOP1	no	no	0.237	0.264	0.34	9e-20
Q2QX40	465	Zinc finger protein STAR3	no	no	0.237	0.296	0.320	6e-18
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.239	0.458	0.335	1e-13
O43313	823	ATM interactor OS=Homo sa	yes	no	0.235	0.166	0.306	1e-11
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.204	0.145	0.307	1e-10
Q7Z7L9	614	Zinc finger and SCAN doma	no	no	0.237	0.224	0.290	5e-08

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  315 bits (807), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 155/191 (81%), Gaps = 25/191 (13%)

Query: 51  PPSKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLC 110
           P  KKKR+LPGNP                         DP+AEVIALSPK+LMATNRFLC
Sbjct: 38  PLVKKKRNLPGNP-------------------------DPEAEVIALSPKTLMATNRFLC 72

Query: 111 EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTG 170
           EIC KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCPE +CVHH P+RALGDLTG
Sbjct: 73  EICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTG 132

Query: 171 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRA 230
           IKKHF RKHGEKKWKCEKC+K+YAVQSDWKAHSK CGTREY+CDCG +FSRRDSFITHRA
Sbjct: 133 IKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRA 192

Query: 231 FCDVLAEESAR 241
           FCD LAEE+AR
Sbjct: 193 FCDALAEETAR 203

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  306 bits (783), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/397 (46%), Positives = 220/397 (55%), Gaps = 82/397 (20%)

Query: 8   LVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINF 67
           +  E +  ++S SG     S S ++        H  S  N   P  KKKR+LPGNP    
Sbjct: 1   MTSEVLQTISSGSGFAQPQSSSTLD--------HDESLINP--PLVKKKRNLPGNP---- 46

Query: 68  SLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHR 127
                                DP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHR
Sbjct: 47  ---------------------DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHR 85

Query: 128 RGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE 187
           RGHNLPWKLKQRT+K  RK+VYVCPE TCVHH  SRALGDLTGIKKHF RKHGEKKW CE
Sbjct: 86  RGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCE 145

Query: 188 KCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN- 246
           KC+K+YAVQSDWKAHSK CGTREY+CDCG +FSRRDSFITHRAFCD LAEE+A+   V+ 
Sbjct: 146 KCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSH 205

Query: 247 -------------------------PLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQA 281
                                    P   P   QP ++       P+HHH   Q     +
Sbjct: 206 LNGLAAAGAPGSVNLNYQYLMGTFIPPLQPFVPQPQTN-------PNHHHQHFQPPTSSS 258

Query: 282 LQLQAVKIEDNNQQHHIPPWL-----ACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSP 336
           L L   +     Q      W+     A  + ID      + N     +  N N S + + 
Sbjct: 259 LSLWMGQDIAPPQPQPDYDWVFGNAKAASACID------NNNTHDEQITQNANASLTTTT 312

Query: 337 NPNSTSFAPFEPPGTTGSQ---HTSATALLQKAAQMG 370
             ++ S    + P    +    + SATALLQKAA++G
Sbjct: 313 TLSAPSLFSSDQPQNANANSNVNMSATALLQKAAEIG 349

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  303 bits (775), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 157/202 (77%), Gaps = 29/202 (14%)

Query: 53  SKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI 112
           +KKKR+ PG P                         DPDA+VIALSP +LMATNRF+CEI
Sbjct: 52  AKKKRNQPGTP-------------------------DPDADVIALSPTTLMATNRFVCEI 86

Query: 113 CNKGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKKVYVCPEPTCVHHDPSRALGDLTGI 171
           CNKGFQRDQNLQLHRRGHNLPWKLKQR+ + V +KKVY+CP  TCVHHD SRALGDLTGI
Sbjct: 87  CNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGI 146

Query: 172 KKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAF 231
           KKH+SRKHGEKKWKCEKCSKKYAVQSDWKAH+K CGTREYKCDCG LFSR+DSFITHRAF
Sbjct: 147 KKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAF 206

Query: 232 CDVLAEESARTITV---NPLFS 250
           CD L EE AR  ++   NP+ S
Sbjct: 207 CDALTEEGARMSSLSNNNPVIS 228

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 93  EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV---- 148
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      K  ++ V    
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSE 288

Query: 149 ------YVCPEPTC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 198
                 Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D
Sbjct: 289 PMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIAD 348

Query: 199 WKAHSKICGTREYKCDCGKLFSRRDSFITHRAF 231
            K H K CG  ++ C CG  FSR+D    H A 
Sbjct: 349 LKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)

Query: 94  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK------QRTNKVERKK 147
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K         + + +E   
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 148 V--YVCPEPTC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSDWKA 201
           V  Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 202 HSKICGTREYKCDCGKLFSRRDSFITHRAF 231
           H K CG  ++ C CG  FSR+D    H A 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 94  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRTNK 142
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 143 VERKKVYVCPEPTCVH---HDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 198
            + ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 199 WKAHSKICGTREYKCDCGKLFSRRDSFITHRAF 231
            K H K CG   + C CG  FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 92  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKK---- 147
           A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +    
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 148 --VYVCPEPTCVH--HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 203
              Y C E    H  H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 204 KICGTREYKCDCGKLFSRRDSFITH-RAF 231
           K CG R + C CG  F  + S   H +AF
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 90  PDAEVI--ALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKVE 144
           P  E+I  ++S  S       LC +  C K       L +H  + H L   +   T + +
Sbjct: 64  PAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKD 123

Query: 145 RK---KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKA 201
            K   K Y CP   C    P R     + +K+HF + H EKK KC KCS  Y  + D K 
Sbjct: 124 LKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKR 182

Query: 202 HSKICGTREYKCDCGKLFSRRDSFITH 228
           H++ CG + ++C CG  ++ R +  +H
Sbjct: 183 HAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 108 FLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ---RTNKVERKKVYVCPEPTCVHHDP 161
            LC +  C K       L +H  + H L   +     R +     K Y CP   C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGC-PRGP 138

Query: 162 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSR 221
            R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 222 RDSFITH 228
           R +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q7Z7L9|ZSCA2_HUMAN Zinc finger and SCAN domain-containing protein 2 OS=Homo sapiens GN=ZSCAN2 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 24/162 (14%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 167
           F C  C K F R  NL  H+R H               +K Y CPE         ++ G+
Sbjct: 306 FQCAECGKSFSRSPNLIAHQRTHT-------------GEKPYSCPEC-------GKSFGN 345

Query: 168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSF 225
            + +  H     GEK ++C++C + ++  S+   H +I  G + YKC DCG+ FS+  + 
Sbjct: 346 RSSLNTHQGIHTGEKPYECKECGESFSYNSNLIRHQRIHTGEKPYKCTDCGQRFSQSSAL 405

Query: 226 ITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFP 267
           ITHR       E+  +       FS S        THM+  P
Sbjct: 406 ITHRR--THTGEKPYQCSECGKSFSRSSNLATHRRTHMVEKP 445

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
359475946	509	PREDICTED: zinc finger protein NUTCRACKE	0.839	0.958	0.56	1e-145
147854387	532	hypothetical protein VITISV_006257 [Viti	0.870	0.951	0.500	1e-126
359482846	509	PREDICTED: zinc finger protein NUTCRACKE	0.841	0.960	0.499	1e-124
255572931	552	nucleic acid binding protein, putative [	0.848	0.893	0.484	1e-119
224088818	444	predicted protein [Populus trichocarpa]	0.549	0.718	0.621	1e-117
356522186	498	PREDICTED: zinc finger protein NUTCRACKE	0.800	0.933	0.502	1e-115
357513641	517	Zinc finger protein [Medicago truncatula	0.822	0.924	0.485	1e-115
302398661	539	C2H2L domain class transcription factor	0.815	0.879	0.488	1e-114
255550756	446	nucleic acid binding protein, putative [	0.638	0.831	0.572	1e-114
356528841	524	PREDICTED: zinc finger protein NUTCRACKE	0.841	0.933	0.485	1e-114

>gi|359475946|ref|XP_002278933.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 336/600 (56%), Positives = 389/600 (64%), Gaps = 112/600 (18%)

Query: 3   MMKGLLVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGN 62
           M+KGL+V+ENMSNLTSASGE +ASS                   N+A   +KKKRSLPGN
Sbjct: 1   MLKGLMVDENMSNLTSASGEASASS------------------ANQAPAAAKKKRSLPGN 42

Query: 63  PGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQN 122
           P                         DP+AEV+ALSPK+L ATNRF+CEICNKGFQRDQN
Sbjct: 43  P-------------------------DPNAEVVALSPKTLQATNRFICEICNKGFQRDQN 77

Query: 123 LQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK 182
           LQLHRRGHNLPWKLKQRTNK  RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK
Sbjct: 78  LQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK 137

Query: 183 KWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESART 242
           KWKCEKCSK+YAVQSDWKAHSKICGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR 
Sbjct: 138 KWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARA 197

Query: 243 ITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHH----- 297
           IT NPL S       SS++H+   P     QL S GLQA+    + ++   +QHH     
Sbjct: 198 ITGNPLLSSQPG---SSSSHLNLQP-----QLHSHGLQAV----LSLKREQEQHHSFNLK 245

Query: 298 --IPPWLAC---------PSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPF 346
             IPPWLAC         P SIDLSS L         L+++EN      PNPNST    F
Sbjct: 246 PDIPPWLACPPVLEAGPGPPSIDLSSSL-FSASLDHPLIYHEN------PNPNST-LPSF 297

Query: 347 EPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMP--AGSASTA 404
                T S H SATALLQ+AAQMG TMS +PS  P P+LR   PHQ H     AG +STA
Sbjct: 298 H---HTASPHMSATALLQQAAQMGVTMS-KPSPSP-PMLR---PHQAHMSAANAGFSSTA 349

Query: 405 GAAGSS-SGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTA 463
            A  ++ S LGLSSR+++ASGF+H  L+SFG+KAA  +   +ME  A            A
Sbjct: 350 VATSTAGSDLGLSSRDEMASGFIH-GLASFGSKAAVTS--GFMEHVATGAGAGA----AA 402

Query: 464 PSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLS--RNNHETRDNNG 521
           PSL HD MMSS S  +GF G   SF++A NG+LNPK   +      +    +H +R ++ 
Sbjct: 403 PSLFHD-MMSSLSSASGFGG--PSFEEAFNGMLNPKRENNLQEITKTAMTKSHFSRSDHE 459

Query: 522 GGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 581
           GG      GG+DGLTRDFLGL+ F  SHRDF+NI GLDQ+N  S+S +  QNQN   WQG
Sbjct: 460 GG------GGNDGLTRDFLGLRAF--SHRDFLNIPGLDQMN--SASPYEQQNQNQTPWQG 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854387|emb|CAN79105.1| hypothetical protein VITISV_006257 [Vitis vinifera]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 298/595 (50%), Positives = 350/595 (58%), Gaps = 89/595 (14%)

Query: 13  MSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEAT------PPSKKKRSLPGNPGIN 66
           MSNLTSASGE + SSG+R ET   +  Q  F+  N+A       P  KKKR+LPGNP   
Sbjct: 1   MSNLTSASGEASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNP--- 57

Query: 67  FSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH 126
                                 DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLH
Sbjct: 58  ----------------------DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLH 95

Query: 127 RRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC 186
           RRGHNLPWKLKQRT+K  RKKVYVCPE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKC
Sbjct: 96  RRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC 155

Query: 187 EKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN 246
           +KCSK+YAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT N
Sbjct: 156 DKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGN 215

Query: 247 PLFSPSQQQPNS-----------SATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQ 295
           P+   SQ                S      F S+H          A Q++  +   + + 
Sbjct: 216 PVLLSSQAAAGPSSSTPHSHSQMSLQQQQQFNSNH-------DFHAFQMKKEQQSFSIRS 268

Query: 296 HHIPPWLAC-----PSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPP- 349
             +PPWL+      P+ +D     F+      +L   +N    P+PNP   S  P  PP 
Sbjct: 269 EVVPPWLSSSSSLFPTRLDHD---FTQTTQDLALHDIQN----PNPNP---SLGPTLPPY 318

Query: 350 GTTGSQHTSATALLQKAAQMGATMSTQP---SALPAPVLRVPVPHQTHHMPAGSASTAGA 406
             T S H SATALLQKAAQMGATMS       A P  ++R   PHQ H     SA  +  
Sbjct: 319 HPTLSPHMSATALLQKAAQMGATMSKTTGGSGASPPAMIR---PHQAH----VSADHSCN 371

Query: 407 AGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSL 466
             +  GL LSSRE++  GFV   L+ FGNKAAA  + A     A            +PSL
Sbjct: 372 NTTGFGLNLSSREEMGGGFVQ-GLAPFGNKAAAVPSAAAAAAAATGPGGGA----PSPSL 426

Query: 467 LHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGG 526
           L   MM+S S   GFD  SSSF+DA  G+LN +  G+  H  L   +  T       +GG
Sbjct: 427 LLQDMMTSLSSATGFD--SSSFEDAFGGMLNSRKNGNNLHQTLPSKSTTTTATTHHSSGG 484

Query: 527 SNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 581
           +   G+DGLTRDFLGL+    SH D ++IAGL      ++S    QNQ  + WQG
Sbjct: 485 A---GNDGLTRDFLGLRAL--SHSDILSIAGLGTC--MNTSPHDHQNQTQKPWQG 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482846|ref|XP_002280155.2| PREDICTED: zinc finger protein NUTCRACKER isoform 2 [Vitis vinifera]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 294/589 (49%), Positives = 343/589 (58%), Gaps = 100/589 (16%)

Query: 13  MSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINFSLFNF 72
           MSNLTSASGE + SSG+R ET                 P  KKKR+LPGNP         
Sbjct: 1   MSNLTSASGEASVSSGNRAET-----------------PSVKKKRNLPGNP--------- 34

Query: 73  IFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNL 132
                           DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNL
Sbjct: 35  ----------------DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNL 78

Query: 133 PWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKK 192
           PWKLKQRT+K  RKKVYVCPE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSK+
Sbjct: 79  PWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKR 138

Query: 193 YAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPS 252
           YAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT NP+   S
Sbjct: 139 YAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPVLLSS 198

Query: 253 QQQPNS-----------SATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPW 301
           Q                S      F S+H          A Q++  +   + +   +PPW
Sbjct: 199 QAAAGPSSSTPHSHSQMSLQQQQQFNSNH-------DFHAFQMKKEQQSFSIRSEVVPPW 251

Query: 302 LAC-----PSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPP-GTTGSQ 355
           L+      P+ +D     F+      +L   +N    P+PNP   S  P  PP   T S 
Sbjct: 252 LSSSSSLFPTRLD---HDFTQTTQDLALHDIQN----PNPNP---SLGPTLPPYHPTLSP 301

Query: 356 HTSATALLQKAAQMGATMSTQP---SALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSG 412
           H SATALLQKAAQMGATMS       A P  ++R   PHQ H     SA  +    +  G
Sbjct: 302 HMSATALLQKAAQMGATMSKTTGGSGASPPAMIR---PHQAH----VSADHSCNNTTGFG 354

Query: 413 LGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMM 472
           L LSSRE++  GFV   L+ FGNKAAA  + A     A            +PSLL   MM
Sbjct: 355 LNLSSREEMGGGFVQ-GLAPFGNKAAAVPSAAAAAAAATGPGGGA----PSPSLLLQDMM 409

Query: 473 SSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAGGS 532
           +S S   GFD  SSSF+DA  G+LN +  G+  H  L   +  T       +GG+   G+
Sbjct: 410 TSLSSATGFD--SSSFEDAFGGMLNSRKNGNNLHQTLPSKSTTTTATTHHSSGGA---GN 464

Query: 533 DGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 581
           DGLTRDFLGL+    SH D ++IAGL      ++S    QNQ  + WQG
Sbjct: 465 DGLTRDFLGLRAL--SHSDILSIAGLGTC--MNTSPHDHQNQTQKPWQG 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572931|ref|XP_002527396.1| nucleic acid binding protein, putative [Ricinus communis] gi|223533206|gb|EEF34962.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 286/590 (48%), Positives = 347/590 (58%), Gaps = 97/590 (16%)

Query: 3   MMKGLLV------EENMSNLTSASGEVTASSGSRVETGTNFYAQHSFS--STNEATPPSK 54
           MMKGL+       EENMSNLTSASGE + SSG+R ET  N+  Q  F+     ++ PP+K
Sbjct: 1   MMKGLIFHQQQQQEENMSNLTSASGEASVSSGNRNET--NYPPQQYFAHPPPPQSQPPAK 58

Query: 55  KKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICN 114
           KKR+LPGNP                         DPDAEVIALSPK+LMATNRF+CEICN
Sbjct: 59  KKRNLPGNP-------------------------DPDAEVIALSPKTLMATNRFVCEICN 93

Query: 115 KGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKKVYVCPEPTCVHHDPSRALGDLTGIKK 173
           KGFQRDQNLQLHRRGHNLPWKLKQRTNK V RKKVYVCPE +CVHHDPSRALGDLTGIKK
Sbjct: 94  KGFQRDQNLQLHRRGHNLPWKLKQRTNKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKK 153

Query: 174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCD 233
           HFSRKHGEKKWKC+KCSK+YAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD
Sbjct: 154 HFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCD 213

Query: 234 VLAEESARTIT--VNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIED 291
            LAEESAR IT   NPL  PS Q   ++++   N  S H         Q L   ++K E 
Sbjct: 214 ALAEESARAITDAPNPLLIPSNQSAAAASSATQNPISLHQVPQLMNSHQNLHAFSLKKEQ 273

Query: 292 NN------QQHHIPPWLACPSSIDLSSQLFSGNI------------FSRSLLHNENQSAS 333
                    +  +PPWLACP  +  S                     S S+L+ +    S
Sbjct: 274 QTFSTTTALRPELPPWLACPPGVLGSGSGHGPGPPHHQQTPIEHHHLSSSILNFQQDLGS 333

Query: 334 PSPNPNSTSFAPFEPPGTTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQT 393
            +PNP+     P        S H SATALLQKAAQMGATMS++ +     ++R   PHQ 
Sbjct: 334 SNPNPSLGPTLPHYQAAPPPSPHMSATALLQKAAQMGATMSSK-TTTAGLMMR---PHQH 389

Query: 394 HHMPAGSASTAGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAAST 453
            H    +  TA +  +++           +GFV N  S     AA+    +++    A+ 
Sbjct: 390 QHQHEQAHVTADSTNNNAN---------TTGFVLNLSSRDQELAASGGGGSFVHSLQAA- 439

Query: 454 TTTTTGPGTAPSLLHDMMMSSFSCTNGFDG----SSSSFDDA-LNGIL-NPKGYGDFHHA 507
                  G    LL +MM S  S  +GF+G    +++SF+DA ++G+L N K  G+F   
Sbjct: 440 -------GANGVLLQEMMNSLSSAASGFEGTATATATSFEDAFVSGVLNNSKKDGNFLDG 492

Query: 508 QLSRNNHETRDNNGGGAGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAG 557
            LS+    T  NNGG          + LTRDFLGL+ F  SH D +N+A 
Sbjct: 493 SLSKAT--TNGNNGG----------EDLTRDFLGLRAF--SHSDILNMAA 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088818|ref|XP_002308553.1| predicted protein [Populus trichocarpa] gi|222854529|gb|EEE92076.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/394 (62%), Positives = 271/394 (68%), Gaps = 75/394 (19%)

Query: 9   VEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINFS 68
           ++ENMSNLTSASGEV+ASSGSR+ETG   + QHSF STN+     KKK++LPGNP     
Sbjct: 1   MDENMSNLTSASGEVSASSGSRIETGAK-HPQHSFDSTNQPP--PKKKKNLPGNP----- 52

Query: 69  LFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR 128
                               DPDAEVIALSP SL  TNRFLCEICNKGF+RDQNLQLHRR
Sbjct: 53  --------------------DPDAEVIALSPNSLQTTNRFLCEICNKGFKRDQNLQLHRR 92

Query: 129 GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 188
           GHNLPWKLKQRTNK  RKKVYVCPE TCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK
Sbjct: 93  GHNLPWKLKQRTNKEVRKKVYVCPEVTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 152

Query: 189 CSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPL 248
           CSK+YAVQSDWKAHSKICGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR++TV   
Sbjct: 153 CSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDTLAEESARSMTVL-- 210

Query: 249 FSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQH-------HIPPW 301
              S QQP SSA+H++N             LQAL   +VK E +  Q+        IPPW
Sbjct: 211 ---SSQQPGSSASHLMN-------------LQAL---SVKREQDQNQYLFNPRPDSIPPW 251

Query: 302 LACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATA 361
           LACP   +            +S L    Q  +PSPNP  T   PF+ P +T S H SATA
Sbjct: 252 LACPPIGEAGPD--------QSFL----QHGNPSPNP--TVLPPFQ-PSSTASPHMSATA 296

Query: 362 LLQKAAQMGATMST-QPSALPAPVLRVPVPHQTH 394
           LLQKAAQMG T+S   PS   A +LR   PHQ H
Sbjct: 297 LLQKAAQMGVTVSKPSPSPATAAILR---PHQGH 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522186|ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 297/591 (50%), Positives = 347/591 (58%), Gaps = 126/591 (21%)

Query: 8   LVEENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINF 67
           +VEENMSNLTSASGE +ASSG+R E GT++ A        +  PP KKKR+LPGNP    
Sbjct: 17  IVEENMSNLTSASGEASASSGNRTEIGTSYMA----PPPTQIQPP-KKKRNLPGNP---- 67

Query: 68  SLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHR 127
                                DPDAEVIALSPKSL+ATNRF+CEICNKGFQRDQNLQLHR
Sbjct: 68  ---------------------DPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHR 106

Query: 128 RGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE 187
           RGHNLPWKLKQRT+K  RKKVYVCPEP+CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+
Sbjct: 107 RGHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD 166

Query: 188 KCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNP 247
           KCSKKYAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR I  NP
Sbjct: 167 KCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAI-ANP 225

Query: 248 LFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPWLACPSS 307
           L  P QQQ  SS++HM    +    Q   Q L A  L+            +PPWL  P++
Sbjct: 226 LLPPQQQQ--SSSSHMSTLQT----QFNPQNLHAFPLKK----------EMPPWLGPPAT 269

Query: 308 IDLSSQLFSGNIFSRSLLHNENQSASPSPNPN-STSFAPFEPPGTTGSQHTSATALLQKA 366
           + +   L S +    S  H EN      PNP+   + A ++   T  + H SATALLQKA
Sbjct: 270 VVVDHHLSSSSSIMFSPPHQEN------PNPSLGPTLAAYQ---TVPNPHMSATALLQKA 320

Query: 367 AQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSREDLASG-- 424
           AQMGATMS   S                  PA +     A  S  GL LSSRED  +   
Sbjct: 321 AQMGATMSRSGST-----------------PAMTGPHHHAHVSHFGLNLSSREDTTTTTP 363

Query: 425 ------------FVHNNLSS--FGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDM 470
                       F H  LSS   GNKAAAAA  +                    SLLHD 
Sbjct: 364 STTTTNANTATVFSHGLLSSSPLGNKAAAAAAVSSSAP----------------SLLHD- 406

Query: 471 MMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGGSNAG 530
           +++SFS  + F+G  + F+DA   I + K   D H+  L    H+T     G AG +   
Sbjct: 407 VINSFSSPSAFEG--TPFEDAF--IQSSKKLDDDHNLYL----HDTFSKTSGAAGNN--- 455

Query: 531 GSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 581
            ++GLTRDFLGL+  P SH D + IAG+       +     QNQ+ + WQG
Sbjct: 456 INEGLTRDFLGLR--PLSHADILTIAGI------GNCIHDQQNQSQKPWQG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513641|ref|XP_003627109.1| Zinc finger protein [Medicago truncatula] gi|355521131|gb|AET01585.1| Zinc finger protein [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 279/575 (48%), Positives = 341/575 (59%), Gaps = 97/575 (16%)

Query: 3   MMKGLL-------VEENMSNLTSASGEVTASSGSRVETGTNF---YAQHSFSSTNEATPP 52
           M+KGL+       VEENMSNLTSASGE + SSG+R E GT+      Q  +      + P
Sbjct: 1   MVKGLMMFQQQQVVEENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQSQP 60

Query: 53  SKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI 112
            KKKR+LPGNP                         DPDAEVIA+SPKSL+A NRF+CEI
Sbjct: 61  MKKKRNLPGNP-------------------------DPDAEVIAMSPKSLLAKNRFICEI 95

Query: 113 CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 172
           CNKGFQRDQNLQLHRRGHNLPWKLKQRT+K  RKKVYVCPEPTCVHHDPSRALGDLTGIK
Sbjct: 96  CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIK 155

Query: 173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFC 232
           KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFC
Sbjct: 156 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFC 215

Query: 233 DVLAEESARTITVN--PLF--SPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVK 288
           D LAEESAR +T N  P+          +S   HM+N  +  ++    Q L    L  +K
Sbjct: 216 DALAEESARAMTNNAMPILPSQQQLSSSSSHHHHMINLQNQFNN--PQQDLHNFPL--LK 271

Query: 289 IEDNNQQHH---IPPWLACPSSIDLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAP 345
            E +NQ  +   IPPWL  P ++D        N+ S S + +++     +PNP+    + 
Sbjct: 272 KEQHNQSFNLSEIPPWLG-PHNVD--------NLSSSSSIFSQHHHHQENPNPSLVHVSG 322

Query: 346 FEPPG--TTGSQHTSATALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSAST 403
              P   T  S H SATALLQKAAQMGATM+   SA  +P + +    +TH         
Sbjct: 323 PTLPSYQTVPSAHMSATALLQKAAQMGATMNRSGSA-SSPAMNI----KTHQ-------- 369

Query: 404 AGAAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTA 463
                      + S  +++  F  N LSS     +             +TT+T       
Sbjct: 370 -----------VDSLNNVSGNFGLNLLSS-----SQEQQQHQQNTQETNTTSTYLNN--- 410

Query: 464 PSLLHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGG 523
              +HD+M SS S  +GF+  ++ FD+   GI+N K   + HH + S +   T     GG
Sbjct: 411 ---IHDVMFSSSSSPSGFE--ATHFDEMFGGIMNSKKDQNLHH-ETSLSKKPTSTAEDGG 464

Query: 524 AGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGL 558
            GG   GG++GLTRDFLGL+  P SH D ++IAG+
Sbjct: 465 GGGGGGGGNEGLTRDFLGLR--PLSHSDILSIAGI 497

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398661|gb|ADL36625.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/575 (48%), Positives = 337/575 (58%), Gaps = 101/575 (17%)

Query: 8   LVEENMSNLTSASGEV-TASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGIN 66
           LV+ENMSNLTSASGE  + SSG+R E GTNF +Q  F++  +A P  KKKR+LPGNP   
Sbjct: 12  LVDENMSNLTSASGEAASVSSGNRNEIGTNF-SQQFFTTPPQAQPALKKKRNLPGNP--- 67

Query: 67  FSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH 126
                                 DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLH
Sbjct: 68  ----------------------DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLH 105

Query: 127 RRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC 186
           RRGHNLPWKLKQRT+K  RKKVYVCPE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKC
Sbjct: 106 RRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC 165

Query: 187 EKCSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV- 245
           +KCSK+YAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT  
Sbjct: 166 DKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSA 225

Query: 246 -NP---LFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHIPPW 301
            NP   LFS  QQQ N +   +        HQ  +Q +    L+  +      +  +PPW
Sbjct: 226 NNPHHLLFSQQQQQMNLNQVQL-------GHQF-NQDIHGFSLKKEQQSFTTLRPDLPPW 277

Query: 302 LACPS-SIDLSSQLFSGN-IFSRSL-LHNENQSASPSPNPNSTSFAPFEPP-GTTGSQHT 357
           L  P+ +IDLSS     +    + L L + +   S +PNP  +S  P  PP     S H 
Sbjct: 278 LGPPNCTIDLSSSSSLFSPTHHQDLSLDDSHNGTSQNPNPCPSSLGPTLPPFHPAPSPHM 337

Query: 358 SATALLQKAAQMGATMSTQ------------PSALPAPVLRVPVPHQTHHMPAGSASTAG 405
           SATALLQKAAQMGATMS +             SA P P++RV      H    G  S   
Sbjct: 338 SATALLQKAAQMGATMSGKHSTTTAAAAAAAASASPQPMVRV------HQHSQGHMSEFS 391

Query: 406 AAGSSSGLGLSSREDLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPS 465
              S+     ++  ++ +G                  PA      +             S
Sbjct: 392 GHVSAFAAAGANATNITTG------------------PA-----VSGVHHHHENQHHQAS 428

Query: 466 LLHDMMMSSFSCTNGFDGSSSSFD--DALNGILNPKGYGDFHHAQLSRNNHETRDNNGGG 523
           LLHDMM +S S   GF+G++   +   +L  ILN        +A+   NN    + +G  
Sbjct: 429 LLHDMM-NSLSSGTGFEGAAFELEAFGSLPNILN--------NAKKGSNNSTHFNKSGND 479

Query: 524 AGGSNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGL 558
            GG+N    +GLTRDFLGL+    SH D +NIAG+
Sbjct: 480 DGGANG---EGLTRDFLGLRAL--SHSDILNIAGI 509

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550756|ref|XP_002516426.1| nucleic acid binding protein, putative [Ricinus communis] gi|223544246|gb|EEF45767.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/440 (57%), Positives = 284/440 (64%), Gaps = 69/440 (15%)

Query: 86  FESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVER 145
           F +DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK  R
Sbjct: 3   FGADPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVR 62

Query: 146 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI 205
           KKVYVCPE TCVHHDPSRALGDLTGIKKHF RKHGEKKWKCEKCSK+YAVQSDWKAHSKI
Sbjct: 63  KKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKI 122

Query: 206 CGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSAT-HML 264
           CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT+NPL +  QQQP+SSA+ HM+
Sbjct: 123 CGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITLNPLLASQQQQPSSSASHHMI 182

Query: 265 NFPSHHHHQLQSQGLQALQLQAVKIEDNNQ--------QHHIPPWLA---------CPSS 307
           N             LQ+L     + +D N          H++PPWL           P  
Sbjct: 183 N-------------LQSLSSSVKREQDQNHHLFSPRPDHHNVPPWLGEAAVGPGPLLPQQ 229

Query: 308 I-DLSSQLFSGNIFSRSLLHNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSATALLQKA 366
           I +LSSQL   N+  R   H   Q         +    P  PP  T S H SATALLQKA
Sbjct: 230 ISNLSSQLIPSNLDRRH--HPFLQHNENPSPNPNNLTLPPYPPH-TASPHMSATALLQKA 286

Query: 367 AQMGATMSTQPSALPAPVLRVPVPHQTHHM---PAGSASTA----GAAGSSSGLGLSSRE 419
           AQMG T+S    +  A    +  PHQ  HM    AG +ST+     AAG++SGL LSSRE
Sbjct: 287 AQMGVTISKPSPSPAAAAAVMLRPHQQAHMSVNTAGFSSTSVVATSAAGNTSGLRLSSRE 346

Query: 420 DLASGFVHNNLSSFGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSLLHDMMMSSFSCTN 479
           D+ SGF H  L+SFGNKA A +      Q A           T  SL+HDMM        
Sbjct: 347 DIRSGFGH-GLTSFGNKATATSGIIDHHQMA-----------TDSSLVHDMM-------- 386

Query: 480 GFDGSSSSFDDALNGILNPK 499
                  +FD+  NG+LNPK
Sbjct: 387 -------NFDEDFNGMLNPK 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528841|ref|XP_003533006.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 289/595 (48%), Positives = 348/595 (58%), Gaps = 106/595 (17%)

Query: 10  EENMSNLTSASGEVTASSG-SRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPGINFS 68
           EENMSNLTSASGE +A+S  +R E GT++ A          T  SKKKR+LPGNP     
Sbjct: 13  EENMSNLTSASGEASAASSGNRTEIGTSYMA-----PPPSQTQQSKKKRNLPGNP----- 62

Query: 69  LFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR 128
                               DPDAEVIALSPKSL+ATNRF+CEICNKGFQRDQNLQLHRR
Sbjct: 63  --------------------DPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRR 102

Query: 129 GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK 188
           GHNLPWKLKQRT+K  RKKVYVCPEP+CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+K
Sbjct: 103 GHNLPWKLKQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK 162

Query: 189 CSKKYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPL 248
           CSKKYAVQSDWKAHSK CGTREY+CDCG LFSRRDSFITHRAFCD LAEESAR IT NPL
Sbjct: 163 CSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAIT-NPL 221

Query: 249 FSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIEDNNQQHHI----PPWLAC 304
             P QQQ   S++      +     LQ+Q      L A  ++   Q  ++    PPWL  
Sbjct: 222 LPPQQQQQQPSSSSHHQMST-----LQTQFNPQNNLHAFPLKKEQQSFNVRTEMPPWLGP 276

Query: 305 PSSIDLSSQLFSGNIFSRSLL-----HNENQSASPSPNPNSTSFAPFEPPGTTGSQHTSA 359
           P++  +          S S +     H EN + +PS  P   ++     P      H SA
Sbjct: 277 PAATVVVDHHHHHLSSSSSSIMFSPPHQENPNPNPSLGPTLAAYKTVANP-----PHMSA 331

Query: 360 TALLQKAAQMGATMSTQPSALPAPVLRVPVPHQTHHMPAGSASTAGAAGSSSGLGLSSRE 419
           TALLQKAAQMGATMS   S   +P +  P      H  A  + +A +A +  GL LSSRE
Sbjct: 332 TALLQKAAQMGATMSRSGS---SPAMTGP------HHHAHVSYSADSASAHFGLNLSSRE 382

Query: 420 DLASG------------FVHNNLSS-FGNKAAAAANPAYMEQFAASTTTTTTGPGTAPSL 466
           D  +             F H  LSS  GNKA AA +                   +APSL
Sbjct: 383 DTTTSTTTTTTTKTATVFSHGLLSSPLGNKAGAAVS------------------SSAPSL 424

Query: 467 LHDMMMSSFSCTNGFDGSSSSFDDALNGILNPKGYGDFHHAQLSRNNHETRDNNGGGAGG 526
           LHD++ S     + F+G  + F+DA   I + K   D  H  L  ++  ++ ++  GA G
Sbjct: 425 LHDVINSFSVSPSAFEG--TPFEDAF--IQSSKKLDDDDHHNLYLHDTFSKTSSSTGAAG 480

Query: 527 SNAGGSDGLTRDFLGLKTFPHSHRDFVNIAGLDQINPSSSSTFGPQNQNPRTWQG 581
           +    ++GLTRDFLGL+  P SH D + IAG+       +     QNQ+ + WQG
Sbjct: 481 N---INEGLTRDFLGLR--PLSHTDILTIAGI------GNCIHDHQNQSQKPWQG 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.361	0.461	0.637	4.7e-91
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.263	0.302	0.803	3.7e-82
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.280	0.326	0.785	2.2e-80
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.297	0.430	0.698	3.1e-79
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.273	0.356	0.787	1.2e-77
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.304	0.351	0.690	3e-77
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.275	0.343	0.768	6.3e-77
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.271	0.306	0.734	2.1e-76
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.480	0.617	0.516	3.4e-76
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.297	0.287	0.715	1.8e-75

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 4.7e-91, Sum P(4) = 4.7e-91
 Identities = 139/218 (63%), Positives = 155/218 (71%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKK 147
             DP+AEV+ALSPK+LMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKLKQR+NK V RKK
Sbjct:    73 DPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKK 132

Query:   148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICG 207
             VYVCPEP CVHH PSRALGDLTGIKKHF RKHG            YAVQSDWKAH+K CG
Sbjct:   133 VYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCG 192

Query:   208 TREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFP 267
             T+EYKCDCG LFSRRDSFITHRAFCD LAEESAR +  NP+   +   P+    H     
Sbjct:   193 TKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMP-NPIMIQASNSPHHHH-HQTQQN 250

Query:   268 XXXXXXXXXXXXXXXXXXXVKIEDNNQQHH---IPPWL 302
                                +K E++  QHH   IPPWL
Sbjct:   251 IGFSSSSQNIISNSNLHGPMKQEES--QHHYQNIPPWL 286

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 3.7e-82, Sum P(4) = 3.7e-82
 Identities = 123/153 (80%), Positives = 132/153 (86%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV 148
             DP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+V
Sbjct:    51 DPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV 110

Query:   149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGT 208
             YVCPE +CVHH P+RALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGT
Sbjct:   111 YVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGT 170

Query:   209 REYKCDCGKLFSRRDSFITHRAFCDVLAEESAR 241
             REY+CDCG +FSRRDSFITHRAFCD LAEE+AR
Sbjct:   171 REYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 2.2e-80, Sum P(4) = 2.2e-80
 Identities = 128/163 (78%), Positives = 135/163 (82%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV 148
             DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QR+ K  RKKV
Sbjct:    42 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKV 101

Query:   149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGT 208
             YVCP   CVHHDPSRALGDLTGIKKHF RKHG            YAVQSDWKAHSKICGT
Sbjct:   102 YVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGT 161

Query:   209 REYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSP 251
             +EYKCDCG LFSRRDSFITHRAFCD LAEESA+  T +    P
Sbjct:   162 KEYKCDCGTLFSRRDSFITHRAFCDALAEESAKNHTQSKKLYP 204

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 3.1e-79, Sum P(4) = 3.1e-79
 Identities = 125/179 (69%), Positives = 143/179 (79%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR-TNKVERKK 147
             DPDAEVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ+ T + ++KK
Sbjct:    63 DPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKK 122

Query:   148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICG 207
             VYVCPE  C HH PSRALGDLTGIKKHF RKHG            YAVQSDWKAH+KICG
Sbjct:   123 VYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICG 182

Query:   208 TREYKCDCGKLFSRRDSFITHRAFCDVLAEESAR--TITVNPLFSPSQQQPNSSATHML 264
             TR+Y+CDCG LFSR+D+FITHRAFCD LAEESAR  + + + L +P+   PN    H +
Sbjct:   183 TRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHSTSSSNLTNPN---PNFQGHHFM 238

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
 Identities = 126/160 (78%), Positives = 138/160 (86%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVE-RKK 147
             DPDAEVIALSP SLM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLKQRTNK + +KK
Sbjct:    49 DPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKK 108

Query:   148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICG 207
             VY+CPE TCVHHDP+RALGDLTGIKKHFSRKHG            YAV SDWKAHSKICG
Sbjct:   109 VYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICG 168

Query:   208 TREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNP 247
             T+EY+CDCG LFSR+DSFITHRAFCD LAEESAR ++V P
Sbjct:   169 TKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVSVPP 208

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 3.0e-77, Sum P(4) = 3.0e-77
 Identities = 125/181 (69%), Positives = 141/181 (77%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKK 147
             DPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ + V +KK
Sbjct:    63 DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKK 122

Query:   148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICG 207
             VY+CP  TCVHHD SRALGDLTGIKKH+SRKHG            YAVQSDWKAH+K CG
Sbjct:   123 VYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCG 182

Query:   208 TREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV---NPLFSPSQQQPNSSATHML 264
             TREYKCDCG LFSR+DSFITHRAFCD L EE AR  ++   NP+ S +     + +  M 
Sbjct:   183 TREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMN 242

Query:   265 N 265
             N
Sbjct:   243 N 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 6.3e-77, Sum P(3) = 6.3e-77
 Identities = 123/160 (76%), Positives = 133/160 (83%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV 148
             DP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+V
Sbjct:    47 DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV 106

Query:   149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGT 208
             YVCPE TCVHH  SRALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGT
Sbjct:   107 YVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGT 166

Query:   209 REYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPL 248
             REY+CDCG +FSRRDSFITHRAFCD LAEE+A+   V+ L
Sbjct:   167 REYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHL 206

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 2.1e-76, Sum P(3) = 2.1e-76
 Identities = 116/158 (73%), Positives = 136/158 (86%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV 148
             +PDAEV+ALSPK+LMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKLKQ++ K  ++KV
Sbjct:    64 NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKV 123

Query:   149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGT 208
             Y+CPEPTCVHHDPSRALGDLTGIKKH+ RKHG            YAVQSDWKAHSK CGT
Sbjct:   124 YLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGT 183

Query:   209 REYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVN 246
             +EY+CDCG +FSRRDS+ITHRAFCD L +E+AR  TV+
Sbjct:   184 KEYRCDCGTIFSRRDSYITHRAFCDALIQETARNPTVS 221

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 3.4e-76, Sum P(3) = 3.4e-76
 Identities = 159/308 (51%), Positives = 189/308 (61%)

Query:    89 DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV 148
             DP++EVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q++NK  +KKV
Sbjct:    44 DPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKV 103

Query:   149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGT 208
             YVCPE +CVHHDPSRALGDLTGIKKHF RKHG            YAVQSDWKAHSKICGT
Sbjct:   104 YVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGT 163

Query:   209 REYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPX 268
             +EYKCDCG LFSRRDSFITHRAFCD LAEE+AR+       S S++Q     T     P 
Sbjct:   164 KEYKCDCGTLFSRRDSFITHRAFCDALAEENARSH-----HSQSKKQNPEILTRKNPVPN 218

Query:   269 XXXXXXXXXXXXXXXXXXVKIEDNNQQHHIPPWLAC----PSSIDL--SSQLFSGNIFSR 322
                               + I+ + +    PP +      P+S+++  S+ +F+G +F  
Sbjct:   219 PVPAPVDTESAKIKSSSTLTIKQS-ESPKTPPEIVQEAPKPTSLNVVTSNGVFAG-LFES 276

Query:   323 SLLHNENQXXXXXXXXXXXXXXXXEP--------PGTT--GSQ--HT----SATALLQKA 366
             S                       EP         G++  GS   H     SATALLQKA
Sbjct:   277 SSASPSIYTTSSSSKSLFASSSSIEPISLGLSTSHGSSFLGSNRFHAQPAMSATALLQKA 336

Query:   367 AQMGATMS 374
             AQMGA  S
Sbjct:   337 AQMGAASS 344

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 1.8e-75, Sum P(3) = 1.8e-75
 Identities = 126/176 (71%), Positives = 141/176 (80%)

Query:    91 DAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYV 150
             DAEVIALSPK+LMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ++ K  ++KVY+
Sbjct:    64 DAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYL 123

Query:   151 CPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTRE 210
             CPEP+CVHHDPSRALGDLTGIKKH+ RKHG            YAVQSDWKAHSK CGT+E
Sbjct:   124 CPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKE 183

Query:   211 YKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFS-PSQQQPNSSATHMLN 265
             Y+CDCG LFSRRDSFITHRAFCD LA+ESAR  T   L S PS   P    T+  N
Sbjct:   184 YRCDCGTLFSRRDSFITHRAFCDALAQESARHPT--SLTSLPSHHFPYGQNTNNSN 237

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032197001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (516 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.93
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.83
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.69
KOG3576	267	consensus Ovo and related transcription factors [T	99.67
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.65
KOG3608	467	consensus Zn finger proteins [General function pre	99.62
KOG3576	267	consensus Ovo and related transcription factors [T	99.6
KOG3608	467	consensus Zn finger proteins [General function pre	99.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.47
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.4
PLN03086	567	PRLI-interacting factor K; Provisional	99.19
PHA00733	128	hypothetical protein	98.83
PLN03086	567	PRLI-interacting factor K; Provisional	98.79
PHA00733	128	hypothetical protein	98.75
KOG3993	500	consensus Transcription factor (contains Zn finger	98.74
PHA02768	55	hypothetical protein; Provisional	98.35
KOG3993	500	consensus Transcription factor (contains Zn finger	98.29
PHA02768	55	hypothetical protein; Provisional	98.27
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.1
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.71
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.67
PHA00732	79	hypothetical protein	97.57
PHA00616	44	hypothetical protein	97.57
PHA00616	44	hypothetical protein	97.56
PHA00732	79	hypothetical protein	97.56
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.52
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.38
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.19
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.15
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.83
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.79
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.75
COG5048	467	FOG: Zn-finger [General function prediction only]	96.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.72
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.54
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.26
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.12
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.73
smart00355	26	ZnF_C2H2 zinc finger.	95.66
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.29
KOG1146	1406	consensus Homeobox protein [General function predi	95.23
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.89
smart00355	26	ZnF_C2H2 zinc finger.	94.71
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.68
PRK04860	160	hypothetical protein; Provisional	94.37
COG5048	467	FOG: Zn-finger [General function prediction only]	94.3
KOG2893	341	consensus Zn finger protein [General function pred	94.17
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	93.89
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.43
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	93.34
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.15
PRK04860	160	hypothetical protein; Provisional	93.12
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.75
KOG1146	1406	consensus Homeobox protein [General function predi	91.04
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.77
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.98
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.84
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	89.54
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.33
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	86.53
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	84.76
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	83.65
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	82.99
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	82.94
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	81.82

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.93  E-value=1.8e-26  Score=227.29  Aligned_cols=137  Identities=22%  Similarity=0.384  Sum_probs=129.0

Q ss_pred             CCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccccc
Q 008017           61 GNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRT  140 (581)
Q Consensus        61 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~  140 (581)
                      ....|.|.+|++.|....+|.+|..+|-.-+.            .+.|.|++|+|.|.....|+.|+|+|.         
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s------------~ka~~C~~C~K~YvSmpALkMHirTH~---------  185 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDS------------KKAFSCKYCGKVYVSMPALKMHIRTHT---------  185 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccc------------cccccCCCCCceeeehHHHhhHhhccC---------
Confidence            56789999999999999999999999987443            678999999999999999999999995         


Q ss_pred             ccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCc
Q 008017          141 NKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKL  218 (581)
Q Consensus       141 ~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~  218 (581)
                            -+++|.+|       ||+|.+..-|+-|+|+|+|||||.|..|+|+|+.+++|+.||.+ .+.|+|.|. |+|+
T Consensus       186 ------l~c~C~iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  186 ------LPCECGIC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKS  252 (279)
T ss_pred             ------CCcccccc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhH
Confidence                  67899999       99999999999999999999999999999999999999999999 788999999 9999


Q ss_pred             cCChhHHHHHHhh
Q 008017          219 FSRRDSFITHRAF  231 (581)
Q Consensus       219 F~~~~~L~~H~~~  231 (581)
                      |.+++.|.+|...
T Consensus       253 Fsl~SyLnKH~ES  265 (279)
T KOG2462|consen  253 FALKSYLNKHSES  265 (279)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999999865

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.83  E-value=2.2e-21  Score=191.46  Aligned_cols=110  Identities=25%  Similarity=0.454  Sum_probs=104.7

Q ss_pred             CCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccc
Q 008017           59 LPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ  138 (581)
Q Consensus        59 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~  138 (581)
                      +...+.+.|++|+|.|.+-..|..|+|+|+-                 +++|.+|||.|.+.--|+-|+|+|+       
T Consensus       156 ~~s~ka~~C~~C~K~YvSmpALkMHirTH~l-----------------~c~C~iCGKaFSRPWLLQGHiRTHT-------  211 (279)
T KOG2462|consen  156 LDSKKAFSCKYCGKVYVSMPALKMHIRTHTL-----------------PCECGICGKAFSRPWLLQGHIRTHT-------  211 (279)
T ss_pred             ccccccccCCCCCceeeehHHHhhHhhccCC-----------------CcccccccccccchHHhhccccccc-------
Confidence            3446789999999999999999999999984                 6899999999999999999999999       


Q ss_pred             ccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          139 RTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       139 ~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                            |||||.|..|       +|+|.++++|+.||.+|.+.|+|+|..|+|.|+..+.|.+|...
T Consensus       212 ------GEKPF~C~hC-------~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  212 ------GEKPFSCPHC-------GKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ------CCCCccCCcc-------cchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence                  9999999999       99999999999999999999999999999999999999999876

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.69  E-value=3.1e-18  Score=188.46  Aligned_cols=79  Identities=22%  Similarity=0.487  Sum_probs=69.6

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhhhCCCc-----eeec----CCCc
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTRE-----YKCD----CGKL  218 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~gekp-----y~C~----Cgk~  218 (581)
                      +-+|-+|       -|+..-++.|+.|+|+|+|||||+|++||++|+++.+|+.|+-+|..||     |.|.    |-+.
T Consensus       605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k  677 (958)
T KOG1074|consen  605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK  677 (958)
T ss_pred             ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence            4577777       9999999999999999999999999999999999999999998877665     6674    8889


Q ss_pred             cCChhHHHHHHhhhh
Q 008017          219 FSRRDSFITHRAFCD  233 (581)
Q Consensus       219 F~~~~~L~~H~~~h~  233 (581)
                      |...-.|..|+++|.
T Consensus       678 ftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  678 FTNAVTLPQHIRIHL  692 (958)
T ss_pred             ccccccccceEEeec
Confidence            999999999998885

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.67  E-value=2.1e-17  Score=155.73  Aligned_cols=113  Identities=24%  Similarity=0.534  Sum_probs=105.1

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      ...|.|.+|+|.|....-|.+|++.|.             ..|.|.|..|       ||.|.+.-.|++|+|+|+|.+||
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvrpy  174 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVRPY  174 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcccc
Confidence            567999999999999999999999998             7899999999       99999999999999999999999


Q ss_pred             cccccCCccCChhHHHHHHhh-hC-----------CCceeec-CCCccCChhHHHHHHhhhhhhhh
Q 008017          185 KCEKCSKKYAVQSDWKAHSKI-CG-----------TREYKCD-CGKLFSRRDSFITHRAFCDVLAE  237 (581)
Q Consensus       185 ~C~~Cgk~F~~~s~L~~H~~~-~g-----------ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~  237 (581)
                      +|..|+|.|+.+-.|..|++. ||           +|.|.|+ ||.+-.+...+..|++.|+....
T Consensus       175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            999999999999999999987 75           4679999 99999999999999999885443

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.65  E-value=1e-16  Score=176.65  Aligned_cols=58  Identities=21%  Similarity=0.499  Sum_probs=53.7

Q ss_pred             ccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhhhhhhhccc
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVLAEESAR  241 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~~~~  241 (581)
                      +.|.+|+|.|...+.|..|+|+ +++|||.|. |++.|..+.+|+.||.+|......+.|
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCccC
Confidence            6699999999999999999999 899999999 999999999999999999876666555

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.62  E-value=1.5e-16  Score=160.57  Aligned_cols=163  Identities=18%  Similarity=0.279  Sum_probs=109.9

Q ss_pred             CcccccccChhHHHHHHhhccCCChhhhhcC---------------cccccCCCccccCCCCCccCChHHHHHHHhhcCC
Q 008017           68 SLFNFIFFQFWGLIDFVLFESDPDAEVIALS---------------PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNL  132 (581)
Q Consensus        68 ~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~---------------~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~  132 (581)
                      ..|-+.|..+..|++|+|.|++++...|..+               ..+....++|.|..|.|.|.++..|+.|++.|..
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn  262 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN  262 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            3566666666666666666665443222111               1122346789999999999999999999999875


Q ss_pred             Cccccc-------------c-cccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc--cCCccCCh
Q 008017          133 PWKLKQ-------------R-TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQ  196 (581)
Q Consensus       133 p~~~~~-------------~-~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~--Cgk~F~~~  196 (581)
                      .|+|.-             + ...+...|||+|+.|       ++.|.+.+.|.+|..+|. +-.|.|+.  |...|...
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHH
Confidence            555531             1 123345778888877       777777888888877776 56677876  77777777


Q ss_pred             hHHHHHHhh-h-C--CCceeec-CCCccCChhHHHHHHhhhhhhhhh
Q 008017          197 SDWKAHSKI-C-G--TREYKCD-CGKLFSRRDSFITHRAFCDVLAEE  238 (581)
Q Consensus       197 s~L~~H~~~-~-g--ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~  238 (581)
                      ..+++|++. | |  +-+|.|. |++.|.+-.+|.+|++..|....+
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P  381 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLP  381 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCC
Confidence            778888777 4 2  3458888 888888888888887655544333

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.60  E-value=3.1e-16  Score=147.85  Aligned_cols=114  Identities=24%  Similarity=0.397  Sum_probs=104.8

Q ss_pred             CCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccc
Q 008017           59 LPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ  138 (581)
Q Consensus        59 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~  138 (581)
                      -+....|.|.+|+|.|...+-|.+|++-|.+               .|+|-|..|||.|.....|++|+|+|+       
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~---------------vkr~lct~cgkgfndtfdlkrh~rtht-------  169 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSD---------------VKRHLCTFCGKGFNDTFDLKRHTRTHT-------  169 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccH---------------HHHHHHhhccCcccchhhhhhhhcccc-------
Confidence            4456789999999999999999999999998               788999999999999999999999999       


Q ss_pred             ccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC-----------CccccccccCCccCChhHHHHHHhh-h
Q 008017          139 RTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG-----------EKKWKCEKCSKKYAVQSDWKAHSKI-C  206 (581)
Q Consensus       139 ~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g-----------ekp~~C~~Cgk~F~~~s~L~~H~~~-~  206 (581)
                            |.+||+|..|       +|+|+.+..|..|.+.-+|           +|-|.|+.||..-.....+..|++. |
T Consensus       170 ------gvrpykc~~c-------~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  170 ------GVRPYKCSLC-------EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             ------Cccccchhhh-------hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence                  9999999999       9999999999999886554           5779999999999999999999998 5


Q ss_pred             C
Q 008017          207 G  207 (581)
Q Consensus       207 g  207 (581)
                      .
T Consensus       237 p  237 (267)
T KOG3576|consen  237 P  237 (267)
T ss_pred             C
Confidence            3

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.48  E-value=2.4e-14  Score=144.83  Aligned_cols=100  Identities=24%  Similarity=0.516  Sum_probs=72.6

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhccc-C
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-G  180 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~-g  180 (581)
                      |...|+|+|+.|.+.|.+.+.|.+|..+|              .+..|.|....|     ...|+.+..+++|++.++ |
T Consensus       287 Hs~dkpfKCd~Cd~~c~~esdL~kH~~~H--------------S~~~y~C~h~~C-----~~s~r~~~q~~~H~~evhEg  347 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRESDLAKHVQVH--------------SKTVYQCEHPDC-----HYSVRTYTQMRRHFLEVHEG  347 (467)
T ss_pred             hccCCCccccchhhhhccHHHHHHHHHhc--------------cccceecCCCCC-----cHHHHHHHHHHHHHHHhccC
Confidence            34455666666666666666666666555              377899988433     999999999999999776 4


Q ss_pred             --CccccccccCCccCChhHHHHHHhh-hC------CCceeec-CCCccC
Q 008017          181 --EKKWKCEKCSKKYAVQSDWKAHSKI-CG------TREYKCD-CGKLFS  220 (581)
Q Consensus       181 --ekp~~C~~Cgk~F~~~s~L~~H~~~-~g------ekpy~C~-Cgk~F~  220 (581)
                        +-+|+|..|++.|++-.+|.+|++. |+      -+.|.-. |.-.|-
T Consensus       348 ~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m  397 (467)
T KOG3608|consen  348 NNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM  397 (467)
T ss_pred             CCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence              4569999999999999999999877 64      3445444 554443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.47  E-value=1.1e-14  Score=158.06  Aligned_cols=123  Identities=16%  Similarity=0.337  Sum_probs=102.7

Q ss_pred             CCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccccccc
Q 008017           63 PGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK  142 (581)
Q Consensus        63 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~  142 (581)
                      +..+|..|.+.+.+...|+.|+++-+...             +.-|.|..|...|.++..|.+|+.+|...-.-......
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekn-------------e~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltq  275 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKN-------------EPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQ  275 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhC-------------CCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccc
Confidence            56789999999999999999999866522             45699999999999999999999999621111122222


Q ss_pred             ccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          143 VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       143 ~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ....+.|+|.+|       +|+|+.+..|+.|+|+|.|||||.|+-|+|+|.....+..||..
T Consensus       276 sa~lRKFKCtEC-------gKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  276 SALLRKFKCTEC-------GKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             hhhhcccccccc-------chhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            336788999999       99999999999999999999999999999999999999999864

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.40  E-value=1e-13  Score=150.68  Aligned_cols=81  Identities=25%  Similarity=0.588  Sum_probs=76.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      +..|.|+.|+|.|...+.|.+|.--|.             |.+||+|.+|       .|+|+.+..|..|+|.|.|||||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKPf  951 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKPF  951 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCcc
Confidence            467999999999999999999999998             9999999999       99999999999999999999999


Q ss_pred             cccccCCccCChhHHHHHHhh
Q 008017          185 KCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       185 ~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|+.|+|+|.....+..||..
T Consensus       952 QCdKClKRFSHSGSYSQHMNH  972 (1007)
T KOG3623|consen  952 QCDKCLKRFSHSGSYSQHMNH  972 (1007)
T ss_pred             hhhhhhhhcccccchHhhhcc
Confidence            999999999999999999863

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.19  E-value=4.8e-11  Score=131.35  Aligned_cols=144  Identities=17%  Similarity=0.302  Sum_probs=111.5

Q ss_pred             CccCCcccccccChhHHHHHHhhccCCCh----hhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccc
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESDPDA----EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR  139 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~----~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~  139 (581)
                      ...|..|......+. |..|.........    ..|.........++.+.|+.|++.|. ...|..|+++|+        
T Consensus       407 ~V~C~NC~~~i~l~~-l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--------  476 (567)
T PLN03086        407 TVECRNCKHYIPSRS-IALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--------  476 (567)
T ss_pred             eEECCCCCCccchhH-HHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--------
Confidence            446999988776554 4488766543111    01323333444467789999999996 688999999875        


Q ss_pred             cccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccC----------ChhHHHHHHhhhCCC
Q 008017          140 TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA----------VQSDWKAHSKICGTR  209 (581)
Q Consensus       140 ~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~----------~~s~L~~H~~~~gek  209 (581)
                             ++|.|+ |       ++.+ .+..|..|+.+|..++++.|..|++.|.          ....|..|...+|.+
T Consensus       477 -------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~r  540 (567)
T PLN03086        477 -------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSR  540 (567)
T ss_pred             -------CCccCC-C-------CCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCc
Confidence                   689999 8       7655 6789999999999999999999999995          245899999999999


Q ss_pred             ceeec-CCCccCChhHHHHHHhhhhh
Q 008017          210 EYKCD-CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       210 py~C~-Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      ++.|. |++.|..+ .|..|+..+|.
T Consensus       541 t~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        541 TAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             ceEccccCCeeeeh-hHHHHHHHhhc
Confidence            99999 99998765 67889887764

>PHA00733 hypothetical protein

Probab=98.83  E-value=2.9e-09  Score=96.94  Aligned_cols=84  Identities=15%  Similarity=0.273  Sum_probs=69.4

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhh--h---hcccCCccccccccCCccCChhHHHHHHhhhCCCceeec-CCCc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKH--F---SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKL  218 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H--~---~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~  218 (581)
                      ..+++.|.+|       .+.|.....|..|  +   ..++++++|.|+.|++.|.....|..|++.+ +++|.|. |++.
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            4688999999       7777766655554  1   2334589999999999999999999999875 5679999 9999


Q ss_pred             cCChhHHHHHHhhhhhhh
Q 008017          219 FSRRDSFITHRAFCDVLA  236 (581)
Q Consensus       219 F~~~~~L~~H~~~h~~~~  236 (581)
                      |.....|.+|+...|..+
T Consensus       109 F~~~~sL~~H~~~~h~~~  126 (128)
T PHA00733        109 FRNTDSTLDHVCKKHNIC  126 (128)
T ss_pred             cCCHHHHHHHHHHhcCcc
Confidence            999999999998877654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.79  E-value=8.6e-09  Score=113.80  Aligned_cols=103  Identities=13%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             CCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccccc
Q 008017           61 GNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRT  140 (581)
Q Consensus        61 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~  140 (581)
                      ....+.|..|++.|. ...|..|++.|+                 ++|.|+ |++.+ .+..|..|+++|.         
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~~H-----------------kpv~Cp-Cg~~~-~R~~L~~H~~thC---------  500 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKVFH-----------------EPLQCP-CGVVL-EKEQMVQHQASTC---------  500 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHhcC-----------------CCccCC-CCCCc-chhHHHhhhhccC---------
Confidence            345679999999996 688999999875                 368999 99865 6799999999998         


Q ss_pred             ccccccccccCCCCCccCCCCCCccc----------CchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          141 NKVERKKVYVCPEPTCVHHDPSRALG----------DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       141 ~~~~~~kpy~C~~C~C~~~~~~k~F~----------~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                          .++++.|.+|       ++.|.          ....|..|...+ +.+++.|..||+.|..+ .|..|+..
T Consensus       501 ----p~Kpi~C~fC-------~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~  562 (567)
T PLN03086        501 ----PLRLITCRFC-------GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIA  562 (567)
T ss_pred             ----CCCceeCCCC-------CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHH
Confidence                8999999999       88774          245899999885 99999999999987665 57778766

>PHA00733 hypothetical protein

Probab=98.75  E-value=6.3e-09  Score=94.69  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=70.8

Q ss_pred             CCccccCCCCCccCChHHHHHH--HhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H--~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      .+++.|.+|.+.|.....|..|  ++.|.          ...+.++|.|+.|       ++.|.....|..|++.|  +.
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~s~L~~H~r~h--~~   98 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSSVSLKQHIRYT--EH   98 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCHHHHHHHHhcC--Cc
Confidence            6889999999999998888776  33221          0115789999999       99999999999999987  46


Q ss_pred             cccccccCCccCChhHHHHHHhh-hC
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CG  207 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~g  207 (581)
                      +|.|.+|++.|.....|.+|+.. |+
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcC
Confidence            79999999999999999999987 64

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.74  E-value=1.3e-09  Score=113.29  Aligned_cols=150  Identities=14%  Similarity=0.183  Sum_probs=108.9

Q ss_pred             CccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc------
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK------  137 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~------  137 (581)
                      .|.|..|...|.+-..|.+|..--=             -  --.|+|.+|+|.|....||-.|+|+|.-.....      
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI-------------V--~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P  331 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI-------------V--HVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPP  331 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee-------------E--EeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCC
Confidence            5889999999999999999976211             0  123999999999999999999999996111110      


Q ss_pred             --cc------------cccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC----------------------
Q 008017          138 --QR------------TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE----------------------  181 (581)
Q Consensus       138 --~~------------~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge----------------------  181 (581)
                        +.            .-.......|.|.+|       +|.|.+...|++|..+|+..                      
T Consensus       332 ~k~~~~~rae~~ea~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~  404 (500)
T KOG3993|consen  332 PKQAVETRAEVQEAERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFN  404 (500)
T ss_pred             hhhhhhhhhhhhhccccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccc
Confidence              00            001123347999999       99999999999998887631                      


Q ss_pred             ------------------------ccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhhhh
Q 008017          182 ------------------------KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVL  235 (581)
Q Consensus       182 ------------------------kp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  235 (581)
                                              ....|+.|+-.+..+..--.|.+. +.+.-|.|+ |.-.|.....|.+|...||..
T Consensus       405 ~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  405 QAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             cccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence                                    012245555555555554555555 556679999 999999999999999998843

>PHA02768 hypothetical protein; Provisional

Probab=98.35  E-value=2.6e-07  Score=70.66  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=39.8

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhh
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK  172 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~  172 (581)
                      -|+|++|||.|....+|..|+++|.               ++|+|..|       ++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence            4899999999999999999999995               68999999       99999887765

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.29  E-value=5.1e-07  Score=94.34  Aligned_cols=147  Identities=14%  Similarity=0.132  Sum_probs=99.5

Q ss_pred             CCCCCCCCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcC--c-----------cc-----ccCCCccccCCC
Q 008017           52 PSKKKRSLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALS--P-----------KS-----LMATNRFLCEIC  113 (581)
Q Consensus        52 ~~kkkr~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~--~-----------k~-----~~~~k~f~C~~C  113 (581)
                      ...++=....---|+|.+|+|.|.-.-+|..|+|-|........+..  .           ..     -..+.-|.|.+|
T Consensus       283 LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C  362 (500)
T KOG3993|consen  283 LAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTC  362 (500)
T ss_pred             HhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHh
Confidence            33444333445579999999999999999999999874222110000  0           00     133457999999


Q ss_pred             CCccCChHHHHHHHhhcCCCcccc----------------------cc---ccccc--------ccccccCCCCCccCCC
Q 008017          114 NKGFQRDQNLQLHRRGHNLPWKLK----------------------QR---TNKVE--------RKKVYVCPEPTCVHHD  160 (581)
Q Consensus       114 gk~F~~~s~L~~H~r~H~~p~~~~----------------------~~---~~~~~--------~~kpy~C~~C~C~~~~  160 (581)
                      +|.|++...|++|+.+|++-...+                      .+   ...+.        ......|++|      
T Consensus       363 ~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~------  436 (500)
T KOG3993|consen  363 GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYD------  436 (500)
T ss_pred             hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCC------
Confidence            999999999999998887211111                      00   00000        1223456676      


Q ss_pred             CCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          161 PSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       161 ~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                       +..+..+..-..|.+.-..+.-|.|.+|--.|.....|.+|+..
T Consensus       437 -~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  437 -GSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             -CCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhh
Confidence             66666666666666666677789999999999999999999887

>PHA02768 hypothetical protein; Provisional

Probab=98.27  E-value=2.5e-07  Score=70.81  Aligned_cols=41  Identities=17%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             ccccccCCccCChhHHHHHHhhhCCCceeec-CCCccCChhHH
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSF  225 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~L  225 (581)
                      |.|+.|||.|.+.+.|..|+++|. ++|+|. |++.|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence            445555555555555555554432 444554 55554444433

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.10  E-value=8e-07  Score=57.99  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=22.1

Q ss_pred             hhhhhhhcccCCccccccccCCccCC
Q 008017          170 GIKKHFSRKHGEKKWKCEKCSKKYAV  195 (581)
Q Consensus       170 ~L~~H~~~H~gekp~~C~~Cgk~F~~  195 (581)
                      +|.+|+++|+++|||+|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999988863

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.71  E-value=2e-05  Score=51.40  Aligned_cols=26  Identities=19%  Similarity=0.474  Sum_probs=23.2

Q ss_pred             HHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCC
Q 008017           79 GLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQR  119 (581)
Q Consensus        79 ~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~  119 (581)
                      +|.+|+++|++               +++|.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~---------------~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG---------------EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS---------------SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC---------------CCCCCCCCCcCeeCc
Confidence            58899999987               889999999999964

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.67  E-value=1.2e-05  Score=81.50  Aligned_cols=28  Identities=29%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR  177 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~  177 (581)
                      .+|||+|++-||     .|.|+....|+.|+.-
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lh  373 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLH  373 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhc
Confidence            457888888777     7888888888877764

>PHA00732 hypothetical protein

Probab=97.57  E-value=6e-05  Score=62.77  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=33.8

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      +|.|++|++.|.+...|+.|++.++             .  ++.|++|       ++.|.   .|..|++++.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccCC
Confidence            4778888888888888888877432             1  2467777       77776   46777765554

>PHA00616 hypothetical protein

Probab=97.57  E-value=2.4e-05  Score=57.21  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +|.|..||+.|...++|.+|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            5899999999999999999999998             889988875

>PHA00616 hypothetical protein

Probab=97.56  E-value=3.1e-05  Score=56.61  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=14.1

Q ss_pred             CCcccCchhhhhhhhcccCCccccccc
Q 008017          162 SRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      |+.|..+..|.+|++.|++++++.|+.
T Consensus         8 G~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          8 GGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             hHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            555555555555555555555555543

>PHA00732 hypothetical protein

Probab=97.56  E-value=6.1e-05  Score=62.74  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             CccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.|.+|++.|.....|..|++.++.                 ++.|++|++.|.   .|..|.+.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-----------------~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-----------------LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-----------------CCccCCCCCEeC---ChhhhhcccC
Confidence            37899999999999999999985332                 257999999998   6899987765

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.52  E-value=2.5e-05  Score=79.19  Aligned_cols=51  Identities=31%  Similarity=0.642  Sum_probs=45.8

Q ss_pred             CCccccccc--cCCccCChhHHHHHHhh-h-------------------CCCceeec-CCCccCChhHHHHHHh
Q 008017          180 GEKKWKCEK--CSKKYAVQSDWKAHSKI-C-------------------GTREYKCD-CGKLFSRRDSFITHRA  230 (581)
Q Consensus       180 gekp~~C~~--Cgk~F~~~s~L~~H~~~-~-------------------gekpy~C~-Cgk~F~~~~~L~~H~~  230 (581)
                      ++|||+|++  |.|.|+....|+-|+.. |                   ..|||+|+ |+|+|+...-|+.|++
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            469999987  99999999999999876 5                   35899999 9999999999999985

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.38  E-value=0.00022  Score=54.98  Aligned_cols=52  Identities=17%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             CccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.|+.|++ ..+...|..|+...+..+             .+.+.|++|...+.  .+|..|++.++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~-------------~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSE-------------SKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCC-------------CCCccCCCchhhhh--hHHHHHHHHhc
Confidence            589999999 566789999999866533             35699999998765  49999998764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.19  E-value=0.00016  Score=45.34  Aligned_cols=23  Identities=43%  Similarity=0.902  Sum_probs=21.6

Q ss_pred             cccCCCCCccCChHHHHHHHhhc
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      |+|++|++.|.+...|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.15  E-value=0.00037  Score=53.66  Aligned_cols=52  Identities=25%  Similarity=0.446  Sum_probs=31.0

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      .|.|++|++ ..+...|..|....+.           ...+.+.|++|       ...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~-----------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHR-----------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCc-----------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            377888888 4456778888655431           12346777777       44333  36666666554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.83  E-value=0.00058  Score=42.80  Aligned_cols=23  Identities=9%  Similarity=-0.095  Sum_probs=21.6

Q ss_pred             ccCCcccccccChhHHHHHHhhc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFE   87 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h   87 (581)
                      |.|.+|++.|..+..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.79  E-value=0.00074  Score=57.74  Aligned_cols=65  Identities=22%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             cCCcccccccChhHHHHHHhhccCCChh---hhh----cC-cccccCCCccccCCCCCccCChHHHHHHHhhc
Q 008017           66 NFSLFNFIFFQFWGLIDFVLFESDPDAE---VIA----LS-PKSLMATNRFLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus        66 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~---~~~----~~-~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      +|..|+..|.....|..|+...++-...   .+.    +. .........+.|.+|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            5999999999999999999876653221   000    00 00011123699999999999999999999875

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0012  Score=74.54  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             ccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccC------CccCChhHHHHHHhh-hCCCceeec---CC-C
Q 008017          149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS------KKYAVQSDWKAHSKI-CGTREYKCD---CG-K  217 (581)
Q Consensus       149 y~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cg------k~F~~~s~L~~H~~~-~gekpy~C~---Cg-k  217 (581)
                      -.|..|       ...|-...+|.+|++.++    |.|..|.      .-|.....|..|.|. |    |.|+   |. +
T Consensus       183 p~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~  247 (669)
T KOG2231|consen  183 PLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTK  247 (669)
T ss_pred             ccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccc
Confidence            457777       888888888888888776    5566663      356677788888876 5    5664   42 3


Q ss_pred             ccCChhHHHHHHh
Q 008017          218 LFSRRDSFITHRA  230 (581)
Q Consensus       218 ~F~~~~~L~~H~~  230 (581)
                      .|.....+..|++
T Consensus       248 ~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  248 KFYVAFELEIELK  260 (669)
T ss_pred             eeeehhHHHHHHH
Confidence            3444434444444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.75  E-value=0.00052  Score=73.29  Aligned_cols=148  Identities=22%  Similarity=0.268  Sum_probs=100.1

Q ss_pred             CCccCCcccccccChhHHHHHHh--hccCCChhhhhcCcccccCCCccccC--CCCCccCChHHHHHHHhhcCC--Cccc
Q 008017           63 PGINFSLFNFIFFQFWGLIDFVL--FESDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNL--PWKL  136 (581)
Q Consensus        63 ~~~~C~~C~k~F~~~~~L~~H~~--~h~~~~~~~~~~~~k~~~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~--p~~~  136 (581)
                      ..+.|..|...|.....|.+|.+  .|..+.             -+++.|.  .|++.|.+...|.+|...|..  +..+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~-------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES-------------LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc-------------CCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            46899999999999999999999  566521             1789999  799999999999999999872  1111


Q ss_pred             cc--------------------ccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc--cccccccCCccC
Q 008017          137 KQ--------------------RTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYA  194 (581)
Q Consensus       137 ~~--------------------~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek--p~~C~~Cgk~F~  194 (581)
                      ..                    ........+.+.|..-.|     .+.+.....+..|...|...+  .+.|..|.+.|.
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (467)
T COG5048         355 KLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFN  429 (467)
T ss_pred             ccccCccccccccCCCCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhcc
Confidence            10                    000011223444444333     777777777888888777665  355667888888


Q ss_pred             ChhHHHHHHhhhCC-CceeecCCCccCChhHHHHH
Q 008017          195 VQSDWKAHSKICGT-REYKCDCGKLFSRRDSFITH  228 (581)
Q Consensus       195 ~~s~L~~H~~~~ge-kpy~C~Cgk~F~~~~~L~~H  228 (581)
                      ....+..|++.+.. .++.|.+-+.|.....+..|
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (467)
T COG5048         430 RHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNH  464 (467)
T ss_pred             CcccccccccccccCCceeeccccccchhhhhhcc
Confidence            88888888887433 44444455555554444433

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.72  E-value=0.00095  Score=41.72  Aligned_cols=24  Identities=42%  Similarity=0.899  Sum_probs=20.3

Q ss_pred             cccCCCCCccCChHHHHHHHhhcC
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |.|++|++.|.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998874

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.54  E-value=0.0013  Score=42.91  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=23.5

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +|+|.+|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999999885

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.35  E-value=0.0022  Score=54.71  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             cCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhhhCCCceeec-CCCccCChhHHHHH
Q 008017          150 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITH  228 (581)
Q Consensus       150 ~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~L~~H  228 (581)
                      +|..|       +..|.....|..|+...++...-    ..+.+.....+..+++..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            47777       99999999999999877754211    12223344555555554333479999 99999999999999


Q ss_pred             Hhhhh
Q 008017          229 RAFCD  233 (581)
Q Consensus       229 ~~~h~  233 (581)
                      ++.++
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            98653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.26  E-value=0.0027  Score=39.60  Aligned_cols=24  Identities=8%  Similarity=-0.067  Sum_probs=20.4

Q ss_pred             ccCCcccccccChhHHHHHHhhcc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~   88 (581)
                      |.|.+|++.|.++..|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999874

...

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0077  Score=68.12  Aligned_cols=12  Identities=8%  Similarity=-0.034  Sum_probs=8.0

Q ss_pred             CccCCccccccc
Q 008017           64 GINFSLFNFIFF   75 (581)
Q Consensus        64 ~~~C~~C~k~F~   75 (581)
                      .+.|.+|++.|.
T Consensus        99 ~~~C~~C~~~~~  110 (669)
T KOG2231|consen   99 HHSCHICDRRFR  110 (669)
T ss_pred             hhhcCccccchh
Confidence            456777777764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.73  E-value=0.006  Score=39.69  Aligned_cols=26  Identities=8%  Similarity=-0.062  Sum_probs=23.6

Q ss_pred             CccCCcccccccChhHHHHHHhhccC
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESD   89 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~   89 (581)
                      .|+|..|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            48999999999999999999998753

>smart00355 ZnF_C2H2 zinc finger

Probab=95.66  E-value=0.0077  Score=37.97  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             cccCCCCCccCChHHHHHHHhhcC
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999774

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.29  E-value=0.014  Score=43.92  Aligned_cols=39  Identities=18%  Similarity=0.260  Sum_probs=22.8

Q ss_pred             hhhhhcc-cCCccccccccCCccCChhHHHHHHhh-hCCCc
Q 008017          172 KKHFSRK-HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  210 (581)
Q Consensus       172 ~~H~~~H-~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekp  210 (581)
                      ..+.+.| ..+.|..|++|+..+....+|++|+.+ |+.||
T Consensus        12 ~~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   12 TKKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ----CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3444433 356788899999999999999999888 77765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.23  E-value=0.011  Score=70.57  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=93.1

Q ss_pred             cCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcC---CCccccc----
Q 008017           66 NFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN---LPWKLKQ----  138 (581)
Q Consensus        66 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~---~p~~~~~----  138 (581)
                      .|..|+..+.+++.+..|+..-.-              ..|-|+|+.|+..|+....|..|+|.-+   ..-.|+-    
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S--------------~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~  503 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHS--------------FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNH  503 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeec--------------ccccccCCccchhhhhHHHhhhcccccccccchhHhHhcccc
Confidence            455566666666666555553221              1367999999999999999999999743   1111211    


Q ss_pred             ----c-cccccccccccCCCCCccCCCCCCcccCchhhhhhhhc--ccC-------------------------------
Q 008017          139 ----R-TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR--KHG-------------------------------  180 (581)
Q Consensus       139 ----~-~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~--H~g-------------------------------  180 (581)
                          + .....+.++|.|..|       ...++.+.+|.+|+..  |..                               
T Consensus       504 ~~~arg~~~~~~~~p~~C~~C-------~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~  576 (1406)
T KOG1146|consen  504 PRLARGEVYRCPGKPYPCRAC-------NYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLG  576 (1406)
T ss_pred             ccccccccccCCCCcccceee-------eeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCC
Confidence                0 111125578888888       8888888888888753  110                               


Q ss_pred             ----------CccccccccCCccCChhHHHHHHhh-hCCCc-eeec-CCCccCChhHHHHHHhhh
Q 008017          181 ----------EKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE-YKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       181 ----------ekp~~C~~Cgk~F~~~s~L~~H~~~-~gekp-y~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                                +-.|.|.+|+..-....+|+.|+.. +..++ ..|. |.-.+.....+.-+.+.+
T Consensus       577 ~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  577 PSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             CCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence                      1237788888877777778888776 33333 6666 666666555555555444

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.89  E-value=0.023  Score=58.71  Aligned_cols=112  Identities=16%  Similarity=0.281  Sum_probs=70.3

Q ss_pred             ccccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcc------cCchhhhhhhhcc
Q 008017          107 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL------GDLTGIKKHFSRK  178 (581)
Q Consensus       107 ~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F------~~~s~L~~H~~~H  178 (581)
                      .|.|+.  |.........|+.|.+..+.               .+.|.+|.-    -.+.|      -++..|..|...-
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~---------------~~~C~~C~~----nKk~F~~E~~lF~~~~Lr~H~~~G  211 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG---------------FVLCSECIG----NKKDFWNEIRLFRSSTLRDHKNGG  211 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC---------------cEEhHhhhc----CcccCccceeeeecccccccccCC
Confidence            588876  77777778899999877542               234544411    12222      2345566665543


Q ss_pred             cCC---c-cccccccCCccCChhHHHHHHhhhCCCceeec-CC----CccCChhHHHHHHhhhhhhhh
Q 008017          179 HGE---K-KWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CG----KLFSRRDSFITHRAFCDVLAE  237 (581)
Q Consensus       179 ~ge---k-p~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cg----k~F~~~~~L~~H~~~h~~~~~  237 (581)
                      ..+   | .-.|..|.+.|..-+.|.+|+|.-.|+-|.|+ -+    .=|....+|.+|-+.-|++|.
T Consensus       212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct  279 (493)
T COG5236         212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCT  279 (493)
T ss_pred             ccccCcCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEE
Confidence            322   2 12588888888888888888887556666665 32    237777788888777666554

>smart00355 ZnF_C2H2 zinc finger

Probab=94.71  E-value=0.023  Score=35.67  Aligned_cols=24  Identities=8%  Similarity=-0.049  Sum_probs=22.1

Q ss_pred             ccCCcccccccChhHHHHHHhhcc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~   88 (581)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.68  E-value=0.016  Score=36.90  Aligned_cols=23  Identities=43%  Similarity=0.996  Sum_probs=21.3

Q ss_pred             cccCCCCCccCChHHHHHHHhhc
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      |.|++|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>PRK04860 hypothetical protein; Provisional

Probab=94.37  E-value=0.015  Score=55.10  Aligned_cols=35  Identities=26%  Similarity=0.780  Sum_probs=18.8

Q ss_pred             cccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCC
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR  221 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~  221 (581)
                      +|.|. |++   ....+++|.++ .++++|.|. |+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            45555 554   44445555555 555555555 5555543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.30  E-value=0.015  Score=62.09  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=74.9

Q ss_pred             CccccCCCCCccCChHHHHHHHh--hcCCCccccccccccccc--ccccCC--CCCccCCCCCCcccCchhhhhhhhccc
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTNKVERK--KVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r--~H~~p~~~~~~~~~~~~~--kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      .++.|..|.+.|.....|.+|.+  .|.             ++  +++.|+  .|       ++.|.+...+..|...|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            47899999999999999999999  787             77  899999  67       999999999999999999


Q ss_pred             CCccccccc--cCCccCChhHH----HHH-Hhh-hCCCceeec---CCCccCChhHHHHHHhhh
Q 008017          180 GEKKWKCEK--CSKKYAVQSDW----KAH-SKI-CGTREYKCD---CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       180 gekp~~C~~--Cgk~F~~~s~L----~~H-~~~-~gekpy~C~---Cgk~F~~~~~L~~H~~~h  232 (581)
                      +.++++|..  |.+.+.....-    ..+ ... ...+.+.|.   |-..+.+...+..|...+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH  411 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccc
Confidence            888877754  55554443331    111 111 444555553   555555555555554433

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=94.17  E-value=0.016  Score=57.02  Aligned_cols=46  Identities=26%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             cCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHH-hhc
Q 008017           66 NFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHR-RGH  130 (581)
Q Consensus        66 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~-r~H  130 (581)
                      =|..|++.|...+.|+.|.+.                   |-|+|.+|.|...+--.|..|. .+|
T Consensus        12 wcwycnrefddekiliqhqka-------------------khfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA-------------------KHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeeecccccchhhhhhhhhhh-------------------ccceeeeehhhhccCCCceeehhhhh
Confidence            399999999999999999883                   4599999999888888888884 455

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.89  E-value=0.05  Score=41.01  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .+.+-.|++|+..+....+|++|+.+++
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            4678999999999999999999998766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.43  E-value=0.043  Score=34.90  Aligned_cols=23  Identities=13%  Similarity=-0.031  Sum_probs=21.2

Q ss_pred             ccCCcccccccChhHHHHHHhhc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFE   87 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h   87 (581)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999854

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=93.34  E-value=0.24  Score=52.40  Aligned_cols=160  Identities=17%  Similarity=0.123  Sum_probs=94.5

Q ss_pred             CCccCCcccccccChhHHHHHHhh--ccCC-----------Chhhh-----hcC---cc-cccCCCccccCCCCCccCCh
Q 008017           63 PGINFSLFNFIFFQFWGLIDFVLF--ESDP-----------DAEVI-----ALS---PK-SLMATNRFLCEICNKGFQRD  120 (581)
Q Consensus        63 ~~~~C~~C~k~F~~~~~L~~H~~~--h~~~-----------~~~~~-----~~~---~k-~~~~~k~f~C~~Cgk~F~~~  120 (581)
                      ..|+|.-|...|..-..-+.|++.  |.-.           ..+..     ...   .+ .-..+-++.|.+|.|.|...
T Consensus         2 t~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~   81 (390)
T KOG2785|consen    2 TGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASP   81 (390)
T ss_pred             CcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccCh
Confidence            368999999999999999999986  3310           00000     000   00 01234578999999999999


Q ss_pred             HHHHHHHhh--cCCCcccccccc----ccccccccc-------------CCCCCccCCCCCCcccCchhhhhhhhc----
Q 008017          121 QNLQLHRRG--HNLPWKLKQRTN----KVERKKVYV-------------CPEPTCVHHDPSRALGDLTGIKKHFSR----  177 (581)
Q Consensus       121 s~L~~H~r~--H~~p~~~~~~~~----~~~~~kpy~-------------C~~C~C~~~~~~k~F~~~s~L~~H~~~----  177 (581)
                      .....|+..  |..  ......+    .....+.+.             |..+       ...+........+...    
T Consensus        82 ~a~~~hl~Sk~h~~--~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~-------~E~~~~~d~~~e~~~dd~~E  152 (390)
T KOG2785|consen   82 KAHENHLKSKKHVE--NLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKW-------YEVDSDEDSSEEEEEDDEEE  152 (390)
T ss_pred             hhHHHHHHHhhcch--hhhhhhccccccchhhhhccccCccccccCCCcccch-------hhcccccccchhhccCcchh
Confidence            999999753  320  0000000    000011111             2222       2222221222222211    


Q ss_pred             --------ccCCccccccccCCccCChhHHHHHHhh-hCC-----------------------Cceeec-CC---CccCC
Q 008017          178 --------KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT-----------------------REYKCD-CG---KLFSR  221 (581)
Q Consensus       178 --------H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge-----------------------kpy~C~-Cg---k~F~~  221 (581)
                              .-.+-|-.|-.|++.|.....-..||.. ||-                       .-|.|- |.   +.|.+
T Consensus       153 di~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~s  232 (390)
T KOG2785|consen  153 DIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSS  232 (390)
T ss_pred             hhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccc
Confidence                    1112356789999999999999999987 632                       237788 98   99999


Q ss_pred             hhHHHHHHhh
Q 008017          222 RDSFITHRAF  231 (581)
Q Consensus       222 ~~~L~~H~~~  231 (581)
                      ....+.||.-
T Consensus       233 leavr~HM~~  242 (390)
T KOG2785|consen  233 LEAVRAHMRD  242 (390)
T ss_pred             cHHHHHHHhh
Confidence            9999999963

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.15  E-value=0.034  Score=36.33  Aligned_cols=23  Identities=30%  Similarity=0.816  Sum_probs=21.0

Q ss_pred             cccCCCCCccCChHHHHHHHhhc
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      |.|..|++.|.+...|..|+++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999998753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=93.12  E-value=0.051  Score=51.49  Aligned_cols=39  Identities=21%  Similarity=0.385  Sum_probs=33.2

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCc
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDL  168 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~  168 (581)
                      -+|.|. |++   ....+++|.++|.             ++++|.|..|       +..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------g~~~YrC~~C-------~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------GEAVYRCRRC-------GETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------CCccEECCCC-------CceeEEe
Confidence            469998 998   6788999999998             8999999999       7776544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.75  E-value=0.1  Score=32.95  Aligned_cols=23  Identities=4%  Similarity=-0.168  Sum_probs=19.1

Q ss_pred             ccCCcccccccChhHHHHHHhhcc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~   88 (581)
                      |.|..|+.... +..|.+|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            68999999998 999999999875

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=91.04  E-value=0.14  Score=61.64  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             CCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc
Q 008017           58 SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK  137 (581)
Q Consensus        58 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~  137 (581)
                      -.+..-.+.|.+|.+.|.-...+. |+-.                  +.+|.|..|...|.....|..|.+.-       
T Consensus      1254 ~~~~sGe~~c~~~~~~~~~~~~~~-~l~~------------------~~~~~~~~~~~~~~~~~~l~~~~~k~------- 1307 (1406)
T KOG1146|consen 1254 ELPASGEGECGAVDELLTPSFGIS-TLDV------------------THRYLCRQCKMAFDGEAPLTAHQRKF------- 1307 (1406)
T ss_pred             cCcCCCcchhhhccccccCcccee-eccc------------------chhHHHHHHHhhhcchhHHHHHHHHH-------
Confidence            345556788999999998887776 5542                  45699999999999999999887321       


Q ss_pred             cccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          138 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       138 ~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                                              .+.|.....+.-|+..+..-+.| |..|...|.....|..|+++
T Consensus      1308 ------------------------~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1308 ------------------------CFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred             ------------------------HhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHH
Confidence                                    34555556666677777776777 88888888888888888888

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.77  E-value=0.11  Score=33.93  Aligned_cols=23  Identities=9%  Similarity=-0.145  Sum_probs=20.8

Q ss_pred             CccCCcccccccChhHHHHHHhh
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLF   86 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~   86 (581)
                      .|.|..|++.|.+...|..|++.
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            37899999999999999999985

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.98  E-value=0.28  Score=51.03  Aligned_cols=132  Identities=20%  Similarity=0.271  Sum_probs=84.6

Q ss_pred             CccCC--cccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCC---CccC------ChHHHHHHHhhcCC
Q 008017           64 GINFS--LFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICN---KGFQ------RDQNLQLHRRGHNL  132 (581)
Q Consensus        64 ~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cg---k~F~------~~s~L~~H~r~H~~  132 (581)
                      .|.|+  .|.........|+.|.+..+.                 .+.|.+|-   +.|.      +...|+.|...-. 
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-----------------~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~-  212 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-----------------FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGL-  212 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcC-----------------cEEhHhhhcCcccCccceeeeecccccccccCCc-
Confidence            35565  466666667889999987664                 35566653   3333      3345555543221 


Q ss_pred             Ccccccccccccc-cccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccC----CccCChhHHHHHHhhhC
Q 008017          133 PWKLKQRTNKVER-KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS----KKYAVQSDWKAHSKICG  207 (581)
Q Consensus       133 p~~~~~~~~~~~~-~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cg----k~F~~~s~L~~H~~~~g  207 (581)
                               ...| +.--.|..|       ...|-+-..|.+|+|..+ |+-|.|+.-+    .-|+.-..|.+|.+.  
T Consensus       213 ---------~e~GFKGHP~C~FC-------~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~--  273 (493)
T COG5236         213 ---------EEEGFKGHPLCIFC-------KIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRN--  273 (493)
T ss_pred             ---------cccCcCCCchhhhc-------cceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhc--
Confidence                     0001 123479998       899999999999998766 3334444333    248888899999876  


Q ss_pred             CCceeec---CC----CccCChhHHHHHHhhhh
Q 008017          208 TREYKCD---CG----KLFSRRDSFITHRAFCD  233 (581)
Q Consensus       208 ekpy~C~---Cg----k~F~~~~~L~~H~~~h~  233 (581)
                       .-|.|.   |.    ..|.....|..|+..-|
T Consensus       274 -~hy~ct~qtc~~~k~~vf~~~~el~~h~~~~h  305 (493)
T COG5236         274 -AHYCCTFQTCRVGKCYVFPYHTELLEHLTRFH  305 (493)
T ss_pred             -CceEEEEEEEecCcEEEeccHHHHHHHHHHHh
Confidence             227774   63    46888889999985433

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.84  E-value=0.26  Score=31.01  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=12.2

Q ss_pred             eeec-CCCccCChhHHHHHHhhhh
Q 008017          211 YKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       211 y~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      |+|. |..... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            5566 666665 666666666554

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=0.11  Score=50.18  Aligned_cols=81  Identities=21%  Similarity=0.468  Sum_probs=66.9

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-h----------CCCceee
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTREYKC  213 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~----------gekpy~C  213 (581)
                      ....|.|.+-||     -+.|.....+..|..+-++.   .|.+|.+.|.+..-|..|+.. |          |...|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            456789999988     89999999889888765553   799999999999999999865 4          4557999


Q ss_pred             c---CCCccCChhHHHHHHhhhh
Q 008017          214 D---CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       214 ~---Cgk~F~~~~~L~~H~~~h~  233 (581)
                      -   |+..|.+...-++|+-.-|
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhc
Confidence            4   9999999999999985433

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.33  E-value=0.42  Score=32.76  Aligned_cols=24  Identities=29%  Similarity=0.811  Sum_probs=21.3

Q ss_pred             ccccCCCCCccCChHHHHHHHhhc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      +|.|++|++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            588999999999999999998643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=86.53  E-value=0.82  Score=47.63  Aligned_cols=160  Identities=16%  Similarity=0.228  Sum_probs=84.3

Q ss_pred             CCccCCcccccccC-hhHHHHHHhhccC-----CChhhhhcCccccc--CCCccccCCCCCccCChHHHHHHHhh--cCC
Q 008017           63 PGINFSLFNFIFFQ-FWGLIDFVLFESD-----PDAEVIALSPKSLM--ATNRFLCEICNKGFQRDQNLQLHRRG--HNL  132 (581)
Q Consensus        63 ~~~~C~~C~k~F~~-~~~L~~H~~~h~~-----~~~~~~~~~~k~~~--~~k~f~C~~Cgk~F~~~s~L~~H~r~--H~~  132 (581)
                      ..-.|-.|...+.- +.....|+..-|.     ++.-+..-..-.|.  .-.++.|-.|.|.|+.+..|+.|||.  |.+
T Consensus       143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr  222 (423)
T KOG2482|consen  143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR  222 (423)
T ss_pred             eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence            45679999988864 4556677665332     11110000000011  12468999999999999999999975  321


Q ss_pred             CcccccccccccccccccCCCCCccCCCCCCcccC-chhhhhhhh----cc---------cCCcc--ccccccCCccCCh
Q 008017          133 PWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD-LTGIKKHFS----RK---------HGEKK--WKCEKCSKKYAVQ  196 (581)
Q Consensus       133 p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~-~s~L~~H~~----~H---------~gekp--~~C~~Cgk~F~~~  196 (581)
                         ...+.+.  -.+-|.-.+-.-     +++... ...+.+-..    .+         .+..+  .+|-.|...+-+.
T Consensus       223 ---inPknre--YDkfyiINY~ev-----~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~  292 (423)
T KOG2482|consen  223 ---INPKNRE--YDKFYIINYLEV-----GKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENP  292 (423)
T ss_pred             ---cCCCccc--cceEEEEeHhhc-----CCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhH
Confidence               0000000  011121111100     111110 011100000    00         01122  5888888888888


Q ss_pred             hHHHHHHhh-hC---------------------------CCceeec-CCCccCChhHHHHHHhhh
Q 008017          197 SDWKAHSKI-CG---------------------------TREYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       197 s~L~~H~~~-~g---------------------------ekpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      ..|..||++ |.                           .+.-.|- |...|-..-.|..|+.-+
T Consensus       293 ~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  293 VFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             HHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            888888887 51                           1123466 889999999999998643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=84.76  E-value=0.74  Score=29.64  Aligned_cols=19  Identities=26%  Similarity=0.676  Sum_probs=10.5

Q ss_pred             cccccCCccCChhHHHHHHh
Q 008017          185 KCEKCSKKYAVQSDWKAHSK  204 (581)
Q Consensus       185 ~C~~Cgk~F~~~s~L~~H~~  204 (581)
                      .|+.||+.| ..+.|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455566665 4455555554

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=83.65  E-value=1  Score=47.03  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=46.2

Q ss_pred             CCccCCcccccccChhHHHHHHhhccCCChh-----------------------hhhcC-------cccc---------c
Q 008017           63 PGINFSLFNFIFFQFWGLIDFVLFESDPDAE-----------------------VIALS-------PKSL---------M  103 (581)
Q Consensus        63 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~-----------------------~~~~~-------~k~~---------~  103 (581)
                      .++.|-.|.+.|..+..|+.|||.-...+..                       +....       ...+         .
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed  273 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNED  273 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcC
Confidence            4678999999999999999999973311100                       00000       0000         0


Q ss_pred             CCCc--cccCCCCCccCChHHHHHHHhhcC
Q 008017          104 ATNR--FLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       104 ~~k~--f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ...+  .+|-.|.+.+.....|..||++-+
T Consensus       274 ~a~a~~v~CLfC~~~~en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  274 DAEALSVVCLFCTNFYENPVFLFEHMKIVH  303 (423)
T ss_pred             CCCccceEEEeeccchhhHHHHHHHHHHHH
Confidence            0112  589999999999999999998754

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=82.99  E-value=1.1  Score=28.77  Aligned_cols=22  Identities=9%  Similarity=-0.135  Sum_probs=18.8

Q ss_pred             CccCCcccccccChhHHHHHHhh
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLF   86 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~   86 (581)
                      ...|..|++.| ....|..|++.
T Consensus         2 l~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCCCEE-CHHHHHHHHHh
Confidence            35799999999 88889999864

>smart00451 ZnF_U1 U1-like zinc finger

Probab=82.94  E-value=0.87  Score=31.15  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=16.7

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=81.82  E-value=1.7  Score=46.11  Aligned_cols=138  Identities=9%  Similarity=0.022  Sum_probs=78.9

Q ss_pred             CCCCCccCCcccccccChhHHHHHHhhccCCChhhhhc--CcccccCCCcc-------------ccCCCCCccCChHHHH
Q 008017           60 PGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIAL--SPKSLMATNRF-------------LCEICNKGFQRDQNLQ  124 (581)
Q Consensus        60 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~--~~k~~~~~k~f-------------~C~~Cgk~F~~~s~L~  124 (581)
                      ..+..+.|..|.+.|.+......|++.-..........  ........+.+             .|..|-..+.......
T Consensus        64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~  143 (390)
T KOG2785|consen   64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSE  143 (390)
T ss_pred             hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccch
Confidence            45668999999999999999999998633211110000  00000001111             1333333333322222


Q ss_pred             HHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC-----------------------
Q 008017          125 LHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE-----------------------  181 (581)
Q Consensus       125 ~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge-----------------------  181 (581)
                      .+...-. ..............-|-.|-.|       ++.+.....-.+||..+|+-                       
T Consensus       144 e~~~dd~-~Edi~~d~~~e~e~~Pt~CLfC-------~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~  215 (390)
T KOG2785|consen  144 EEEEDDE-EEDIEEDGDDEDELIPTDCLFC-------DKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVG  215 (390)
T ss_pred             hhccCcc-hhhhhhccchhcccCCcceeec-------CCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhc
Confidence            2221100 0000000011112345678888       89999999999999998862                       


Q ss_pred             ccccccccC---CccCChhHHHHHHhh
Q 008017          182 KKWKCEKCS---KKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~~Cg---k~F~~~s~L~~H~~~  205 (581)
                      .-+.|-.|.   +.|......+.||..
T Consensus       216 ~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  216 IGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             cCceEEEeccccCcccccHHHHHHHhh
Confidence            347899998   999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	9e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 108 FLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL 165
           F+C    CNK + +  +LQ+H R H         T +    K Y C    C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH---------TGE----KPYQCDFKDC-----ERRF 48

Query: 166 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFS 220
                +K+H  R+H G K ++C+ C +K++     K H++   G + + C    C K F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 221 RRDSFITH 228
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHS 203
           + ++C  P C     ++    L+ ++ H SRKH GEK ++C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 204 KI-CGTREYKCD-CGKLFSRRDSFITHR 229
           +   G + ++C  C + FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 27/127 (21%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C    + F+    L +H R H         T +    K + C    C      ++   L 
Sbjct: 42  CSRELRPFKAQYMLVVHMRRH---------TGE----KPHKCTFEGC-----RKSYSRLE 83

Query: 170 GIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE--YKCD---CGKLFSR 221
            +K H  R H GEK + CE   CSK ++  SD   H     + E  Y C    C K ++ 
Sbjct: 84  NLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142

Query: 222 RDSFITH 228
             S   H
Sbjct: 143 PSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 20/128 (15%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 167
              + C++ F   + L  H           +  +     K +VC           R    
Sbjct: 4   CRWDGCSQEFDSQEQLVHHIN--------SEHIHGER--KEFVCHW--GGCSRELRPFKA 51

Query: 168 LTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFS 220
              +  H  R+H GEK  KC  E C K Y+   + K H +   G + Y C    C K FS
Sbjct: 52  QYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110

Query: 221 RRDSFITH 228
                  H
Sbjct: 111 NASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 21/96 (21%)

Query: 113 CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 172
           C K + R +NL+ H R H         T     +K Y+C    C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH---------TG----EKPYMCEHEGC-----SKAFSNASDRA 116

Query: 173 KHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHSKI 205
           KH +R H  EK + C+   C+K+Y   S  + H K 
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 111 EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTG 170
           E C KGF    +L  H   H               +K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-----DLRFTTKAN 89

Query: 171 IKKHFSRKHGEKKW--KC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFSRR 222
           +KKHF+R H  K     C  E C K +   +  K H         Y+C    C K FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 223 DSFITH 228
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 107 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRA 164
           R++C    C   + ++  LQ H   H         T     +K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH---------TG----EKPFPCKEEGC-----EKG 53

Query: 165 LGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE----YKC---D 214
              L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 215 CGKLFSRRDSFITH 228
           CGK F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 138 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYA 194
           +    V   K Y+C    C       A      ++ H   KH GEK + C+   C K + 
Sbjct: 4   KALPVVY--KRYICSFADC-----GAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFT 55

Query: 195 VQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHR 229
                  HS    G + + CD   C   F+ + +   H 
Sbjct: 56  SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK 204
             +   CP   C     ++   D + ++KH    HG +   C +C K +   S  K H  
Sbjct: 2   EPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQL 55

Query: 205 I-CGTREYKC---DCGKLFSRRDSFITH 228
           +  G + ++C    CGK FS   +  TH
Sbjct: 56  VHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 29/126 (23%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
            + C K F+ +  ++ H   H                +V+VC E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 170 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLFSRR 222
            +K+H    H GEK ++C  E C K++++  + + H +I  G R Y C    C K F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 223 DSFITH 228
            +  +H
Sbjct: 108 TNLKSH 113

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 205
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H + 
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 206 -CGTREYKCD-CGKLFSRRDSFITHR 229
             G + + CD CG+ F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 113 CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIK 172
           C++ F +  +L  H R H         T +    K + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIH---------TGQ----KPFQCRI--C-----MRNFSRSDHLT 51

Query: 173 KHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 205
            H  R H GEK + C+ C +K+A   + K H+KI
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 181 EKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITH 228
           E+ + C  E C ++++       H +I  G + ++C  C + FSR D   TH
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.0 bits (118), Expect = 7e-08
 Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 49/124 (39%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 167
           F C IC + F R  +L  H R H                                     
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH------------------------------------- 26

Query: 168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFI 226
            TG          EK + C+ C +K+A   + K H  I        D   +L S+     
Sbjct: 27  -TG----------EKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLE 75

Query: 227 THRA 230
              A
Sbjct: 76  NEVA 79

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKIC---GTREYKC-DCGKLFSRRDSFITHR 229
               GE  ++C+ CS+ Y   S++  H         + Y C  C K F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 138 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYA 194
                +E+++++ C  P C     ++     + +K H  R H GEK +KC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 195 VQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHR 229
              +   H +   G + ++C  C + FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 108 FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL 165
             C+   C K + +  +L+ H R H               +K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-----DWRF 57

Query: 166 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 205
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRA 230
                    KC +CS   + ++  + H +I C  R +KC+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 72/274 (26%)

Query: 71  NFIF-FQFWGLIDF---VLFESDPDAEVIALSPKSLMATNRFLCEICNKG---FQR--DQ 121
            F+  F    + D    +L  S  + + I +S  ++  T R    + +K     Q+  ++
Sbjct: 28  AFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 122 NLQLHRRGHNLPW---KLKQRTNKVERK-KVYV-CPEPTCVHHDPSRALGDLTGIKKHFS 176
            L++     N  +    +K    +     ++Y+   +    ++D           K + S
Sbjct: 86  VLRI-----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVF------AKYNVS 132

Query: 177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKIC-----GTREYKCDCGKLFSRRDSFITHRAF 231
           R   +   K  +     A+    +    +      G        GK              
Sbjct: 133 RL--QPYLKLRQ-----ALLEL-RPAKNVLIDGVLG-------SGK-------------- 163

Query: 232 CDVLAEESARTITVNPLFSPSQQQPNSSATHMLNFPSHHHHQLQSQGLQALQLQAVKIED 291
              +A +   +  V        Q         LN  + +  +   + LQ L  Q      
Sbjct: 164 -TWVALDVCLSYKV--------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 292 NNQQHHIPPWLACPSSIDLSSQLFSGNIFSRSLL 325
           +   H     L   S      +L     +   LL
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPS-RALG 166
              + C++ F     L  H                   +  +VC    C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 167 DLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKC---DCGKLF 219
            L     H  R H GEK + C    C K +A   + K H +   G + +KC    C + F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 220 SRRDSFITH 228
           +       H
Sbjct: 133 ANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 23/109 (21%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C    K F+    L  H R H         T +    K + CP P C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH---------TGE----KPFPCPFPGC-----GKIFARSE 106

Query: 170 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYKCD 214
            +K H  R H GEK +KC  E C +++A  SD K H  +    +     
Sbjct: 107 NLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 180 GEKKWKCEKCSKKYAVQSDWKAHSKI----CGTREYKCD-CGKLFSRRDSFITHR 229
           G    +CE C      ++    H +          + C+ CGK F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 167
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI 205
                   +      ++ CE C K++       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 44/133 (33%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C  C K F   ++L  H+R H               +K Y CPE  C             
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPE--C------------- 83

Query: 170 GIKKHFSRK-----H-----GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKC-DCG 216
              K FS++     H     GEK + C +C K ++  +  +AH +   T E  YKC +CG
Sbjct: 84  --GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECG 140

Query: 217 KLFSRRDSFITHR 229
           K FSR D+  TH+
Sbjct: 141 KSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 42/131 (32%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C  C K F +  NL+ H+R H               +K Y CPE  C             
Sbjct: 80  CPECGKSFSQRANLRAHQRTHT-------------GEKPYACPE--C------------- 111

Query: 170 GIKKHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGK 217
           G  K FS+          H GEK +KC +C K ++ + +   H +   G + YKC +CGK
Sbjct: 112 G--KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169

Query: 218 LFSRRDSFITH 228
            FSRRD+   H
Sbjct: 170 SFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 26/123 (21%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C  C K F R  +L  H+R H         T     +K Y CPE  C      ++  D  
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH---------T----GEKPYKCPE--C-----GKSFSDKK 63

Query: 170 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKC-DCGKLFSRRDSF 225
            + +H  R H GEK +KC +C K ++ +++ +AH +   T E  Y C +CGK FS+    
Sbjct: 64  DLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHL 121

Query: 226 ITH 228
             H
Sbjct: 122 RAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 229
               GEK + C +C K ++       H +   G + YKC +CGK FS +     H+
Sbjct: 14  ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 170 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFI 226
           G     S  H GEK + C +C K ++  S    H ++  G + YKC +CGK FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 227 THR 229
            H+
Sbjct: 60  NHQ 62

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 229
                +K +KC++C   +  + +  +H  +  G + Y+C  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 173 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 220
           K FSRK         H G K +KC+ C    A  S    H +I    R +KC  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 221 RRDSFITHR 229
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 180 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 229
                KCE C K ++ +   K H +   G + YKC  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 45/134 (33%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C  C+K F     L++H R H               +K + CP+  C         G   
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C---------G--- 42

Query: 170 GIKKHFSRK-----H--------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-D 214
              K + RK     H         E+ + C  C + +  + + + H     G   YKC  
Sbjct: 43  ---KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99

Query: 215 CGKLFSRRDSFITH 228
           C + F ++    +H
Sbjct: 100 CSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 180 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
           G    +C  C KK+  +   K H++   G + ++C  CGK + R+++ + H
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
            +    +++KC++C K ++  SD   H +   G + YKC +CGK F +R   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 172 KKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI---CGTREYKCD-CGKLFSRRDSFI 226
                R H GEK ++C  C  ++      K H          ++ C  C  + +R+    
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 227 TH 228
            H
Sbjct: 63  VH 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 19/74 (25%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C IC+  F +   +++H    +            E    + CP   C        +   +
Sbjct: 18  CYICHARFTQSGTMKMHILQKH-----------TENVAKFHCPH--C-----DTVIARKS 59

Query: 170 GIKKHFSRKH-GEK 182
            +  H  ++H    
Sbjct: 60  DLGVHLRKQHSYSG 73

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
             H   + + C+ C K++  +SD K H+ I  G + +KC  CGK FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 173 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 220
           +HF++          H  E+ + C+ C K +  Q   + H  I    + +KC +CGK F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 221 RRDSFITHR 229
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITHR 229
                +K++ C+ C + +    +   H +     R Y C  C K F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 20/96 (20%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
            E C K F++   L++H+  H         T     +  Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH---------TQ----QLPYECPHEGC-----DKRFSLPS 47

Query: 170 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSK 204
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSK 204
           +YVC    C      +A      +K H    H  +  ++C  E C K++++ S  K H K
Sbjct: 1   MYVCHFENC-----GKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

Query: 205 I-CGTREYKCD-CGKLFSRRDSFITHR 229
           +  G    K D C  +      ++ H 
Sbjct: 55  VHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHR 229
           ++          C K Y   S  KAH +   G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 144 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWK 200
           +R   + C    C      +     + +K H  R H GEK + C  + C  K+A   +  
Sbjct: 1   KRTATHTCDYAGC-----GKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELT 54

Query: 201 AHSKI-CGTREYKCD-CGKLFSRRDSFITHR 229
            H +   G R ++C  C + FSR D    H 
Sbjct: 55  RHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
              C K + +  +L+ H R H               +K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-----GWKFARSD 51

Query: 170 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 205
            + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 177 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-----CGTREYKC-DCGKLFSRRDSFITH 228
           R H GEK + C  C K +  +     H K           + C  CGK F+RR++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFI 226
            +G   H   +   +   C+ C  +       K H   CG R   C  CG+    +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 227 THRAFCD 233
           TH   C 
Sbjct: 60  THPEVCG 66

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 180 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
           G     CE C K +        H     G + Y C  CG  F R+D    H
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 25/126 (19%), Positives = 34/126 (26%), Gaps = 54/126 (42%)

Query: 108 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD 167
             CEIC K F+   +L  H+  H+                                    
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHS------------------------------------ 31

Query: 168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTRE----YKC-DCGKLFSRR 222
                       GEK + C  C  ++  +     H +          Y C  CGK FSR 
Sbjct: 32  ------------GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRP 78

Query: 223 DSFITH 228
           D    H
Sbjct: 79  DHLNGH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 176 SRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
           S    G+K + C+ C K +  +S    H  +  G R Y C  CGK F  +   + H
Sbjct: 2   SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 173 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFS 220
           K F+ K         H G + + C  C KK+ ++     H KI  G + Y+C  C K F 
Sbjct: 17  KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76

Query: 221 RRDSFITH 228
            RDSF  H
Sbjct: 77  WRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 45/127 (35%)

Query: 110 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLT 169
           C+ C K F        H   H                + Y C    C             
Sbjct: 13  CQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGV--C------------- 43

Query: 170 GIKKHFSRKH----------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGK 217
           G  K F  KH          G K ++C  C+K++  +  +  H  +   T+ Y+     +
Sbjct: 44  G--KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQ 99

Query: 218 LFSRRDS 224
             +    
Sbjct: 100 NTTEASG 106

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 185 KCEKCSKKYAVQSDWKAHSKI-CGTREYKC-DCGKLFSRRDSFITH 228
            CE C++ +A Q   K H +     + Y C  C + F+RRD  I H
Sbjct: 4   VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 180 GEKKWKC--EKCSKKYAVQSDWKAHSKICGTRE--YKCD---CGKLFSRRDSFITHR 229
           G     C    C + ++ +     H K     +  + C    CGK F+ +     H 
Sbjct: 4   GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 114 NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKK 173
           +KG      L+  +R H L  + K+    + +  ++              +      + +
Sbjct: 17  HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIH------NPQLLDESSY-----LYR 65

Query: 174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKC-DCGKLFSRRDSFITH 228
             + K    ++ C  C   ++     K H +        C  C K F+  DS + H
Sbjct: 66  LLASKAI-SQFVCPLCLMPFSSSVSLKQHIRY-TEHTKVCPVCKKEFTSTDSALDH 119

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 180 GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKCD-CGKLFS 220
             K + C+ C K ++       H K   T E  +KC       S
Sbjct: 9   VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 183 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRA 230
           K+ CE+C  +    S  K H +     R Y C  C   F  + +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.86
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.81
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.63
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.62
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.6
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.6
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.58
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.57
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.54
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.54
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.51
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.5
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.49
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.49
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.47
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.45
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.45
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.41
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.38
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.37
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.37
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.35
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.35
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.35
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.35
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.32
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.32
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.26
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.24
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.23
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.22
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.19
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.19
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.18
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.17
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.16
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.16
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.14
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.13
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.12
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.09
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.01
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.93
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.91
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.88
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.88
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.86
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.85
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.85
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.85
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.84
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.81
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.81
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.8
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.8
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.8
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.78
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.77
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.76
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.75
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.75
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.75
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.75
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.74
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.74
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.74
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.74
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.73
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.73
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.73
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.72
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.71
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.71
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.7
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.7
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.69
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.69
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.68
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.66
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.64
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.64
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.64
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.63
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.62
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.62
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.59
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.59
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.58
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.58
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.58
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.58
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.58
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.58
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.56
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.56
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.56
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.55
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.55
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.55
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.54
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.53
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.53
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.52
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.51
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.5
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.5
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.5
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.5
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.49
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.49
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.49
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.48
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.48
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.47
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.47
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.44
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.43
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.39
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.38
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.36
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.31
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.26
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.23
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.21
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.2
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.11
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.09
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.07
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.07
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.07
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.04
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.93
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.9
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.9
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.87
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.85
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.85
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.84
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.83
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.83
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.82
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.82
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.82
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.81
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.8
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.77
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.77
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.77
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.76
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.76
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.75
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.74
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.73
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.71
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.71
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.69
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.69
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.68
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.68
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.63
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.61
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.57
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.57
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.7
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.52
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.52
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.5
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.49
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.61
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.47
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.46
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.59
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.42
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.41
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.38
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.37
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.35
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.29
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.27
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.26
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.23
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.2
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.16
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.15
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.21
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.2
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.11
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.18
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.09
1paa_A	30	Yeast transcription factor ADR1; transcription reg	96.95
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.92
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.71
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.62
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.37
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.2
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.03
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.36
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.96
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.41
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.07
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	90.33
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.28

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=5.5e-27  Score=224.36  Aligned_cols=157  Identities=27%  Similarity=0.504  Sum_probs=105.7

Q ss_pred             CCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCccc-------------ccCCCccccCCCCCccCChHHHH
Q 008017           58 SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKS-------------LMATNRFLCEICNKGFQRDQNLQ  124 (581)
Q Consensus        58 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~-------------~~~~k~f~C~~Cgk~F~~~s~L~  124 (581)
                      ...+.+.|.|.+|++.|.....|..|++.|.+...+.+..+.+.             |.++++|.|++|++.|.+...|.
T Consensus        15 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   94 (190)
T 2i13_A           15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR   94 (190)
T ss_dssp             ----------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             hcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHH
Confidence            34455667888888888888888888877766433333333221             23345566666666666666666


Q ss_pred             HHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHh
Q 008017          125 LHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK  204 (581)
Q Consensus       125 ~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~  204 (581)
                      .|++.|.             ++++|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|++
T Consensus        95 ~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A           95 AHQRTHT-------------GEKPYACPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             HHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             HHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHH
Confidence            6666665             7888999988       8999999999999999999999999999999999999999998


Q ss_pred             h-hCCCceeec-CCCccCChhHHHHHHhhhhh
Q 008017          205 I-CGTREYKCD-CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       205 ~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      + +++++|.|. |++.|..+..|.+|+++|+.
T Consensus       155 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          155 THTGEKPYKCPECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             HHHCCCCEECTTTCCEESSHHHHHHHHTTC--
T ss_pred             hcCCCCCeECCCCCCccCCHHHHHHHHHhcCC
Confidence            8 788999998 99999999999999988863

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=4.6e-23  Score=197.06  Aligned_cols=140  Identities=22%  Similarity=0.357  Sum_probs=121.4

Q ss_pred             CCCCCccC--CcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCcccc--CCCCCccCChHHHHHHHhhcCCCcc
Q 008017           60 PGNPGINF--SLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLC--EICNKGFQRDQNLQLHRRGHNLPWK  135 (581)
Q Consensus        60 ~~~~~~~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C--~~Cgk~F~~~s~L~~H~r~H~~p~~  135 (581)
                      ...+.|.|  .+|++.|.....|..|++.|.+               +++|.|  ++|++.|.+...|.+|+++|.    
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----   68 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTG---------------EKPFPCKEEGCEKGFTSLHHLTRHSLTHT----   68 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHC---------------CCSSCCSSTTCCCCCSSHHHHHHHHTTTT----
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCC---------------CCCccCCCCCCChhhCCHHHHHHHHHHcc----
Confidence            34668999  6899999999999999999987               678999  889999999999999999998    


Q ss_pred             cccccccccccccccCC--CCCccCCCCCCcccCchhhhhhh-hcc-cCCccccc--cccCCccCChhHHHHHHhh-hCC
Q 008017          136 LKQRTNKVERKKVYVCP--EPTCVHHDPSRALGDLTGIKKHF-SRK-HGEKKWKC--EKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       136 ~~~~~~~~~~~kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~-~~H-~gekp~~C--~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                               ++++|.|.  .|       ++.|.....|..|+ +.| .++++|.|  +.|++.|.....|..|+++ +++
T Consensus        69 ---------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  132 (190)
T 1tf6_A           69 ---------GEKNFTCDSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ  132 (190)
T ss_dssp             ---------TCCCEECCSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSS
T ss_pred             ---------CCCceeCCCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCC
Confidence                     78889998  67       89999999999998 566 46788999  8899999999999999888 788


Q ss_pred             Cceee--c-CCCccCChhHHHHHHhhhhh
Q 008017          209 REYKC--D-CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       209 kpy~C--~-Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      ++|.|  + |++.|.+...|.+|+++|..
T Consensus       133 ~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          133 LPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            89999  4 99999999999999988763

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=4.2e-23  Score=190.25  Aligned_cols=138  Identities=23%  Similarity=0.379  Sum_probs=123.9

Q ss_pred             CccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCC-----CCCccCChHHHHHHHhhcCCCccccc
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI-----CNKGFQRDQNLQLHRRGHNLPWKLKQ  138 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~-----Cgk~F~~~s~L~~H~r~H~~p~~~~~  138 (581)
                      .|.|..|++.|.+...|..|++.++.            +.++++|.|++     |++.|.+...|.+|+++|.       
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~------------h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------   63 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHI------------HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------   63 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTS------------SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhcc------------CCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------
Confidence            68999999999999999999994321            12267788875     3599999999999999998       


Q ss_pred             ccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhcccCCccccccc--cCCccCChhHHHHHH-hh-hCCCcee
Q 008017          139 RTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS-KI-CGTREYK  212 (581)
Q Consensus       139 ~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~--Cgk~F~~~s~L~~H~-~~-~gekpy~  212 (581)
                            ++++|.|.+  |       ++.|.....|..|+++|+++++|+|++  |++.|.....|.+|+ ++ .++++|.
T Consensus        64 ------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~  130 (155)
T 2gli_A           64 ------GEKPHKCTFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV  130 (155)
T ss_dssp             ------CCCCCCCCSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEE
T ss_pred             ------CCCCccCCCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCee
Confidence                  889999986  7       999999999999999999999999998  999999999999999 56 6889999


Q ss_pred             ec---CCCccCChhHHHHHHhhhh
Q 008017          213 CD---CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       213 C~---Cgk~F~~~~~L~~H~~~h~  233 (581)
                      |.   |++.|.+...|.+|++.|+
T Consensus       131 C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          131 CKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             CCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCCCCCccccCCHHHHHHHHHhhc
Confidence            94   9999999999999999886

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.86  E-value=1.1e-21  Score=187.46  Aligned_cols=138  Identities=24%  Similarity=0.440  Sum_probs=125.2

Q ss_pred             CCCCCccC--CcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccC--CCCCccCChHHHHHHH-hhcCCCc
Q 008017           60 PGNPGINF--SLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHR-RGHNLPW  134 (581)
Q Consensus        60 ~~~~~~~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~--~Cgk~F~~~s~L~~H~-r~H~~p~  134 (581)
                      .+...|.|  .+|++.|.....|..|+++|.+               +++|.|+  .|++.|.+...|.+|+ +.|.   
T Consensus        38 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~---   99 (190)
T 1tf6_A           38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG---------------EKNFTCDSDGCDLRFTTKANMKKHFNRFHN---   99 (190)
T ss_dssp             HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTT---------------CCCEECCSSSCCCEESCHHHHHHHHHTTSS---
T ss_pred             CCCCCccCCCCCCChhhCCHHHHHHHHHHccC---------------CCceeCCCCCCCCccCCHHHHHHHHHHhcC---
Confidence            34567999  8899999999999999999886               6789999  8999999999999999 6663   


Q ss_pred             ccccccccccccccccC--CCCCccCCCCCCcccCchhhhhhhhcccCCccccccc--cCCccCChhHHHHHHhhhCCCc
Q 008017          135 KLKQRTNKVERKKVYVC--PEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKICGTRE  210 (581)
Q Consensus       135 ~~~~~~~~~~~~kpy~C--~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~--Cgk~F~~~s~L~~H~~~~gekp  210 (581)
                               .++++|.|  ++|       ++.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++|..  
T Consensus       100 ---------~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--  161 (190)
T 1tf6_A          100 ---------IKICVYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--  161 (190)
T ss_dssp             ---------TTTSCCEECSSSS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--
T ss_pred             ---------CCcceeeCCCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC--
Confidence                     15789999  888       999999999999999999999999988  99999999999999999433  


Q ss_pred             eeec----CCCccCChhHHHHHHhhhh
Q 008017          211 YKCD----CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       211 y~C~----Cgk~F~~~~~L~~H~~~h~  233 (581)
                      |.|.    |++.|.....|.+|+++|+
T Consensus       162 ~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          162 YPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             CCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             CcCCCCCcCCCccccHHHHHHHHHhhc
Confidence            8774    9999999999999999886

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.85  E-value=8e-22  Score=188.40  Aligned_cols=148  Identities=25%  Similarity=0.530  Sum_probs=108.0

Q ss_pred             hhHHHHHHhhccCCChhhhhcCc-------------ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccc
Q 008017           77 FWGLIDFVLFESDPDAEVIALSP-------------KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKV  143 (581)
Q Consensus        77 ~~~L~~H~~~h~~~~~~~~~~~~-------------k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~  143 (581)
                      ...|..|++.|.++..+.+..+.             +.|.++++|.|++|++.|.+...|..|++.|.            
T Consensus         6 ~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------------   73 (190)
T 2i13_A            6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT------------   73 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH------------
T ss_pred             hccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC------------
Confidence            45678888888776665554443             33456677888888888888888888888776            


Q ss_pred             cccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCC
Q 008017          144 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSR  221 (581)
Q Consensus       144 ~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~  221 (581)
                       ++++|.|++|       ++.|.....|..|++.|+++++|.|++|++.|.....|..|+++ +++++|.|. |++.|..
T Consensus        74 -~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  145 (190)
T 2i13_A           74 -GEKPYKCPEC-------GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR  145 (190)
T ss_dssp             -CCCCEECTTT-------CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred             -CCCCccCccc-------CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCC
Confidence             7899999999       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             hhHHHHHHhhhh----hhhhhcccccC
Q 008017          222 RDSFITHRAFCD----VLAEESARTIT  244 (581)
Q Consensus       222 ~~~L~~H~~~h~----~~~~~~~~~~~  244 (581)
                      ...|.+|+++|+    ..+..+.+.+.
T Consensus       146 ~~~L~~H~~~H~~~~~~~C~~C~~~f~  172 (190)
T 2i13_A          146 EDNLHTHQRTHTGEKPYKCPECGKSFS  172 (190)
T ss_dssp             HHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             HHHHHHHHHhcCCCCCeECCCCCCccC
Confidence            999999999986    34555665553

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=2.1e-21  Score=170.59  Aligned_cols=110  Identities=29%  Similarity=0.692  Sum_probs=104.9

Q ss_pred             cCCCccccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCC--CCCccCCCCCCcccCchhhhhhhhcc
Q 008017          103 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus       103 ~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      .++++|.|.+  |++.|.+...|..|+++|.             ++++|.|+  .|       ++.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            3578999997  9999999999999999998             88999999  68       99999999999999999


Q ss_pred             cCCccccccccCCccCChhHHHHHHhh-hCCCceee--c-CCCccCChhHHHHHHhhh
Q 008017          179 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       179 ~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      +++++|.|++|++.|.....|..|+++ +++++|.|  . |++.|.+...|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 89999999  7 999999999999999876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=3.9e-21  Score=169.97  Aligned_cols=111  Identities=22%  Similarity=0.501  Sum_probs=104.7

Q ss_pred             cCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhc---cc
Q 008017          103 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR---KH  179 (581)
Q Consensus       103 ~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~---H~  179 (581)
                      .++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|       ++.|.....|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            45789999999999999999999999998             8899999999       9999999999999995   57


Q ss_pred             CCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          180 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       180 gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      ++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.+...|.+|++.+|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            89999999999999999999999999 899999999 9999999999999998655

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.84  E-value=6.2e-21  Score=176.07  Aligned_cols=129  Identities=21%  Similarity=0.280  Sum_probs=112.6

Q ss_pred             CCCCCCccCCcccccccChhHHHHHHhh-ccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc
Q 008017           59 LPGNPGINFSLFNFIFFQFWGLIDFVLF-ESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK  137 (581)
Q Consensus        59 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~  137 (581)
                      ......|.|.+|++.|.....|..|++. |.+....       .......|.|.+|++.|.+...|..|+++|.      
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------   86 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-------NNHVCYWEECPREGKSFKAKYKLVNHIRVHT------   86 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-------SSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH------
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCccc-------CCccccccCCCCcccccCCHHHHHHHHHhcC------
Confidence            3456689999999999999999999998 5442210       0111234899999999999999999999998      


Q ss_pred             cccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhcccCCccccccc--cCCccCChhHHHHHHhh-hCCCcee
Q 008017          138 QRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYK  212 (581)
Q Consensus       138 ~~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~--Cgk~F~~~s~L~~H~~~-~gekpy~  212 (581)
                             ++++|.|.+  |       ++.|.....|.+|+++|+++++|+|.+  |++.|.....|.+|+++ +++++|.
T Consensus        87 -------~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~  152 (155)
T 2rpc_A           87 -------GEKPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP  152 (155)
T ss_dssp             -------CCCSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSC
T ss_pred             -------CCCcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCC
Confidence                   889999998  8       999999999999999999999999997  99999999999999999 8999999


Q ss_pred             ec
Q 008017          213 CD  214 (581)
Q Consensus       213 C~  214 (581)
                      |.
T Consensus       153 c~  154 (155)
T 2rpc_A          153 SS  154 (155)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=8.8e-21  Score=167.66  Aligned_cols=117  Identities=20%  Similarity=0.374  Sum_probs=106.0

Q ss_pred             CCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccc
Q 008017           60 PGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR  139 (581)
Q Consensus        60 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~  139 (581)
                      .+...|.|.+|++.|.....|..|++.|.+               +++|.|++|++.|.+...|.+|++.|+        
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~C~~~f~~~~~l~~H~~~~~--------   59 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTG---------------EKPFECPKCGKCYFRKENLLEHEARNC--------   59 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSS---------------CCSCBCTTTCCBCSSHHHHHHHHHHCC--------
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCC---------------CCCeECCCCCchhcCHHHHHHHHhhhh--------
Confidence            345689999999999999999999999886               678999999999999999999998652        


Q ss_pred             cccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCC
Q 008017          140 TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       140 ~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                        .+.++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|++. |..
T Consensus        60 --~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           60 --MNRSEQVFTCSVC-------QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             --CCSCCCCEECSSS-------CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             --cCCCCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence              0127899999999       99999999999999999999999999999999999999999986 543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=1.9e-21  Score=176.95  Aligned_cols=105  Identities=20%  Similarity=0.355  Sum_probs=97.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      ..+.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|       ++.|.....|..|+++|+
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~   74 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKHEIHHT   74 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHHHHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------CeecccccchhhhccccC
Confidence            44567899999999999999999999999998             8999999999       999999999999999999


Q ss_pred             CCccccccccCCccCChhHHHHHHhh-hCC------Cceeec-CCCccCChhH
Q 008017          180 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGT------REYKCD-CGKLFSRRDS  224 (581)
Q Consensus       180 gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge------kpy~C~-Cgk~F~~~~~  224 (581)
                      ++++|.|++|++.|.....|..|+++ |++      ++|+|. |++.|.+...
T Consensus        75 ~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           75 GERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             TCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             CCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            99999999999999999999999999 765      459999 9999986544

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=2.8e-20  Score=165.01  Aligned_cols=112  Identities=18%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             CccCC--cccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccc
Q 008017           64 GINFS--LFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTN  141 (581)
Q Consensus        64 ~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~  141 (581)
                      .|.|.  .|++.|.....|..|++.| +               +++|.|.+|++.|.+...|..|+++|.          
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h-~---------------~~~~~C~~C~~~f~~~~~l~~H~~~h~----------   58 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH-G---------------PRVHVCAECGKAFVESSKLKRHQLVHT----------   58 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG-S---------------CCCEECTTTCCEESSHHHHHHHGGGTS----------
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc-C---------------CCCeECCCCCchhCCHHHHHHHHHHcC----------
Confidence            46666  6666666666666666655 2               345666666666666666666666665          


Q ss_pred             cccccccccCCC--CCccCCCCCCcccCchhhhhhhhcccCCcccccc--ccCCccCChhHHHHHHhh-hCCCce
Q 008017          142 KVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       142 ~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                         ++++|.|.+  |       ++.|.....|..|+++|+++++|.|.  .|++.|.....|.+|+++ ++++++
T Consensus        59 ---~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           59 ---GEKPFQCTFEGC-------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             ---CCCCEECCSTTC-------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             ---CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence               566666654  5       66666666666666666666666663  366666666666666666 455543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.81  E-value=2.7e-20  Score=163.53  Aligned_cols=110  Identities=23%  Similarity=0.442  Sum_probs=103.9

Q ss_pred             CCCCccCCc--ccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccC--CCCCccCChHHHHHHHhhcCCCccc
Q 008017           61 GNPGINFSL--FNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKL  136 (581)
Q Consensus        61 ~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~~  136 (581)
                      +.+.|.|.+  |++.|.....|..|++.|.+               +++|.|+  .|++.|.+...|..|+++|.     
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-----   62 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTG---------------EKPYQCDFKDCERRFSRSDQLKRHQRRHT-----   62 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHT---------------TCCEECCSTTCCCEESSHHHHHHHHHHHH-----
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCC---------------CCCccCCCCCCcCccCCHHHHHHHHHHcC-----
Confidence            456799997  99999999999999999876               6789999  79999999999999999998     


Q ss_pred             ccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc--cccCCccCChhHHHHHHhh
Q 008017          137 KQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC--EKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       137 ~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C--~~Cgk~F~~~s~L~~H~~~  205 (581)
                              ++++|.|++|       ++.|.....|..|+++|+++++|+|  +.|++.|.....|.+|+++
T Consensus        63 --------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           63 --------GVKPFQCKTC-------QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             --------CCCCEECTTT-------CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             --------CCCCccCCcc-------CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence                    8999999999       9999999999999999999999999  8999999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=5.2e-20  Score=163.25  Aligned_cols=110  Identities=27%  Similarity=0.583  Sum_probs=101.9

Q ss_pred             CCCccccC--CCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          104 ATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       104 ~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      .+++|.|+  .|++.|.+...|.+|+++|              ++++|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            36789999  8999999999999999988              4789999999       99999999999999999999


Q ss_pred             ccccccc--cCCccCChhHHHHHHhh-hCCCceee--c-CCCccCChhHHHHHHhhhhh
Q 008017          182 KKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKC--D-CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       182 kp~~C~~--Cgk~F~~~s~L~~H~~~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.+...|.+|+++|+.
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            9999986  99999999999999999 89999999  6 99999999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=6.2e-20  Score=166.97  Aligned_cols=106  Identities=14%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             CCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc
Q 008017           58 SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK  137 (581)
Q Consensus        58 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~  137 (581)
                      ...|++.|.|.+|++.|.....|..|+++|.+               +++|.|++|++.|.+...|..|+++|.      
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~---------------~k~~~C~~C~k~F~~~~~L~~H~~~H~------   74 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSW---------------EKKYPCRYCEKVFPLAEYRTKHEIHHT------   74 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHC---------------CSCEECSSSSCEESSHHHHHHHHHHHH------
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCC---------------CCCeeCCccCeecccccchhhhccccC------
Confidence            34677889999999999999999999999987               789999999999999999999999998      


Q ss_pred             cccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc------cccccccCCccCChhH
Q 008017          138 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK------KWKCEKCSKKYAVQSD  198 (581)
Q Consensus       138 ~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek------p~~C~~Cgk~F~~~s~  198 (581)
                             ++++|.|++|       ++.|..+..|..|+++|++++      +|+|.+|++.|.....
T Consensus        75 -------~~k~~~C~~C-------~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           75 -------GERRYQCLAC-------GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             -------TCCCEEESSS-------CCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             -------CCccccCCCC-------CCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence                   8999999999       999999999999999998764      5899999999876543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=5.3e-19  Score=163.03  Aligned_cols=119  Identities=20%  Similarity=0.341  Sum_probs=102.3

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhh-cCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~-H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      .+..|.|.+|++.|.+...|.+|++. |.....     ........|.|.+|       ++.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~-----~~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE-----QNNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTT-----CSSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcc-----cCCccccccCCCCc-------ccccCCHHHHHHHHHhcCCCC
Confidence            36789999999999999999999998 541000     00001123889999       999999999999999999999


Q ss_pred             cccccc--cCCccCChhHHHHHHhh-hCCCceeec---CCCccCChhHHHHHHhhhhh
Q 008017          183 KWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD---CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       183 p~~C~~--Cgk~F~~~s~L~~H~~~-~gekpy~C~---Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      +|.|.+  |++.|.....|.+|+++ +++++|.|.   |++.|.+...|.+|+++|+.
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  147 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS  147 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTS
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            999998  99999999999999999 889999997   99999999999999999863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.3e-18  Score=156.59  Aligned_cols=113  Identities=26%  Similarity=0.448  Sum_probs=101.0

Q ss_pred             CCCccCC-----cccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCC--CCCccCChHHHHHHHhhcCCCc
Q 008017           62 NPGINFS-----LFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPW  134 (581)
Q Consensus        62 ~~~~~C~-----~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~  134 (581)
                      .+.|.|.     .|++.|.....|..|++.|.+               +++|.|.+  |++.|.+...|..|+++|.   
T Consensus        32 ~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~---   93 (155)
T 2gli_A           32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG---------------EKPHKCTFEGCRKSYSRLENLKTHLRSHT---   93 (155)
T ss_dssp             SSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC---------------CCCCCCCSTTCCCCCSSHHHHHHHHHHTT---
T ss_pred             CcceeCCCCCccchhhhhhhHHHHHHHHHhcCC---------------CCCccCCCCCCCCcccCHHHHHHHHHHcC---
Confidence            3456665     456999999999999999886               67899986  9999999999999999998   


Q ss_pred             ccccccccccccccccCCCCCccCCCCCCcccCchhhhhhh-hcccCCccccccc--cCCccCChhHHHHHHhh-hC
Q 008017          135 KLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CG  207 (581)
Q Consensus       135 ~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~-~~H~gekp~~C~~--Cgk~F~~~s~L~~H~~~-~g  207 (581)
                                ++++|.|++++|     ++.|.....|.+|+ +.|.++++|+|.+  |++.|.....|..|+++ ||
T Consensus        94 ----------~~~~~~C~~~~C-----~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           94 ----------GEKPYMCEHEGC-----SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             ----------TCCCEECCSTTC-----CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             ----------CCCCeeCCCCCC-----CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence                      899999998222     99999999999999 8999999999998  99999999999999998 53

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=2.1e-17  Score=142.44  Aligned_cols=91  Identities=23%  Similarity=0.527  Sum_probs=85.3

Q ss_pred             cCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          103 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       103 ~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      ..+++|.|.+|++.|.....|.+|+++|.             ++++|.|.+|       ++.|.....|..|+++|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCC
Confidence            44788999999999999999999999998             8899999999       999999999999999999999


Q ss_pred             cccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      +|+|.+|++.|.....|.+|+++ +++++|.+
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            99999999999999999999999 78888764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=7.3e-18  Score=147.64  Aligned_cols=90  Identities=14%  Similarity=0.261  Sum_probs=79.1

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhh--cCCCcccccccccccccccc-cCCCCCccCCCCCCcc--cCchhhhhhhhcc
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRTNKVERKKVY-VCPEPTCVHHDPSRAL--GDLTGIKKHFSRK  178 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~--H~~p~~~~~~~~~~~~~kpy-~C~~C~C~~~~~~k~F--~~~s~L~~H~~~H  178 (581)
                      ++++|.|++|++.|.....|.+|+++  |.             +.+++ .|.+|       ++.|  ..+..|..|+++|
T Consensus        16 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A           16 GASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSCCCCCCCCCCCSC
T ss_pred             CCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------CcccccccHHHHHHHhhcc
Confidence            37899999999999999999999998  65             55655 49999       7777  8999999999999


Q ss_pred             cCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          179 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       179 ~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      +++++|+|++|++.|.....|.+|+++ +......+
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999999999999 65554443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=4.9e-17  Score=140.09  Aligned_cols=92  Identities=18%  Similarity=0.319  Sum_probs=86.2

Q ss_pred             CCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccc
Q 008017           60 PGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR  139 (581)
Q Consensus        60 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~  139 (581)
                      ...+.|.|.+|++.|.....|..|++.|.+               +++|.|.+|++.|.....|.+|+++|.        
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~C~~~f~~~~~l~~H~~~h~--------   69 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTD---------------ERPYTCDICHKAFRRQDHLRDHRYIHS--------   69 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCC---------------SCCCBCSSSCCBCSCHHHHHHHGGGSC--------
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCC---------------CCCcCCCCccchhCCHHHHHHHHHHhC--------
Confidence            345679999999999999999999999886               678999999999999999999999998        


Q ss_pred             cccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc
Q 008017          140 TNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  186 (581)
Q Consensus       140 ~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C  186 (581)
                           ++++|.|.+|       ++.|.....|.+|+++|+++++|.+
T Consensus        70 -----~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           70 -----KEKPFKCQEC-------GKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             -----CCCTTSCSSS-------CCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             -----CCCCeECCCc-------CCcccCHHHHHHHHHHhCCCCCCcC
Confidence                 8999999999       9999999999999999999999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.2e-17  Score=137.80  Aligned_cols=88  Identities=27%  Similarity=0.496  Sum_probs=71.2

Q ss_pred             cCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          103 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       103 ~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      .++++|.|.+|++.|.+...|..|++.|.             ++++|.|.+|       ++.|.....|..|++.|++++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   63 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDER   63 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCCC
Confidence            34677888888888888888888888887             6778888888       888888888888888888888


Q ss_pred             cccccccCCccCChhHHHHHHhh-hCCCc
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CGTRE  210 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~gekp  210 (581)
                      +|+|.+|++.|.....|..|+++ ++++.
T Consensus        64 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           64 PFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            88888888888888888888887 66554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=8.2e-17  Score=139.37  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=84.3

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcc
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      .+.+.++++|.|.+|++.|.....|..|+++|.               ++|.|.+|       ++.|.....|..|++ |
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~-H   64 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES-K   64 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH-H
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH-c
Confidence            345667899999999999999999999999983               68999999       999999999999996 9


Q ss_pred             cCCccccccccCCccCChhHHHHHHh-h-hCCCceeec
Q 008017          179 HGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYKCD  214 (581)
Q Consensus       179 ~gekp~~C~~Cgk~F~~~s~L~~H~~-~-~gekpy~C~  214 (581)
                      +++++|+|++|++.|.....|.+|++ + .++++|.|.
T Consensus        65 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             CSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999998 5 678888874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.5e-16  Score=132.67  Aligned_cols=85  Identities=25%  Similarity=0.486  Sum_probs=67.8

Q ss_pred             cCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC-
Q 008017          103 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE-  181 (581)
Q Consensus       103 ~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge-  181 (581)
                      .++++|.|.+|++.|.+...|.+|+++|.             ++++|.|.+|       ++.|.....|..|++.|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            34677888888888888888888888887             6778888888       88888888888888888876 


Q ss_pred             -ccccccccCCccCChhHHHHHHhh-hC
Q 008017          182 -KKWKCEKCSKKYAVQSDWKAHSKI-CG  207 (581)
Q Consensus       182 -kp~~C~~Cgk~F~~~s~L~~H~~~-~g  207 (581)
                       ++|+|.+|++.|.....|..|++. |.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhcC
Confidence             788888888888888888888764 53

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.63  E-value=1.2e-16  Score=133.19  Aligned_cols=85  Identities=26%  Similarity=0.556  Sum_probs=58.1

Q ss_pred             CCccccC--CCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          105 TNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       105 ~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      +++|.|.  .|++.|.....|.+|+++|.             ++++|.|.+|       ++.|.....|..|+++|++++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            4567776  47777777777777777765             5667777776       777777777777777777777


Q ss_pred             cccccccCCccCChhHHHHHHhh-hCCC
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CGTR  209 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~gek  209 (581)
                      +|.|.+|++.|.....|.+|+++ ++++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            77777777777777777777766 4443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.8e-16  Score=131.88  Aligned_cols=90  Identities=13%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             CCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCccccccc
Q 008017           61 GNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRT  140 (581)
Q Consensus        61 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~  140 (581)
                      +...|.|.+|++.|.....|..|++.|.+               +++|.|.+|++.|.....|.+|+++|.         
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~C~~~f~~~~~l~~H~~~h~---------   60 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTG---------------VKPYKCKTCDYAAADSSSLNKHLRIHS---------   60 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCC---------------CCSEECSSSCCEESSHHHHHHHHHHSC---------
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCC---------------CCCEeCCCCCCccCCHHHHHHHHHHhC---------
Confidence            45679999999999999999999999876               678999999999999999999999998         


Q ss_pred             ccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccc
Q 008017          141 NKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  185 (581)
Q Consensus       141 ~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~  185 (581)
                          ++++|.|.+|       ++.|.....|..|+++|++++...
T Consensus        61 ----~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           61 ----DERPFKCQIC-------PYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             ----CCCCEECSSS-------SCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             ----CCCCccCCCC-------CCccCCHHHHHHHHHHhcCCCCCC
Confidence                8999999999       999999999999999999987543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.6e-16  Score=136.56  Aligned_cols=84  Identities=30%  Similarity=0.624  Sum_probs=52.4

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCCh
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRR  222 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~  222 (581)
                      ++++|.| +|       ++.|.....|.+|++.|+++++|+|.+|++.|.....|.+|+++ +++++|.|. |++.|.+.
T Consensus         7 ~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   78 (110)
T 2csh_A            7 GDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR   78 (110)
T ss_dssp             CCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCH
T ss_pred             CCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCH
Confidence            5555666 55       56666666666666666666666666666666666666666666 556666666 66666666


Q ss_pred             hHHHHHHhhhhhhh
Q 008017          223 DSFITHRAFCDVLA  236 (581)
Q Consensus       223 ~~L~~H~~~h~~~~  236 (581)
                      ..|.+|++.|+...
T Consensus        79 ~~l~~H~~~~~~~~   92 (110)
T 2csh_A           79 DSFHRHVTSCTKSY   92 (110)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccc
Confidence            66666666665433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4e-16  Score=135.41  Aligned_cols=58  Identities=16%  Similarity=0.324  Sum_probs=42.5

Q ss_pred             ccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          141 NKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       141 ~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ..+.++++|.|.+|       ++.|.....|.+|+++|+++++|+|.+|++.|.....|.+|+++
T Consensus        30 ~~h~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           30 SMHLGLRPYGCGVC-------GKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             HHHSCCCSEECTTT-------SCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             HHcCCCcCccCCCC-------CcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            33445677777777       77777777777777777777777777777777777777777766

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.62  E-value=1.9e-16  Score=129.40  Aligned_cols=79  Identities=32%  Similarity=0.579  Sum_probs=51.7

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  186 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C  186 (581)
                      +|.|.+|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|++.|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            3666666666666666666666665             5566666666       6666666666666666666666666


Q ss_pred             cccCCccCChhHHHHHHhh
Q 008017          187 EKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       187 ~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .+|++.|.....|.+|+++
T Consensus        61 ~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHh
Confidence            6666666666666666655

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.60  E-value=6e-16  Score=128.90  Aligned_cols=83  Identities=23%  Similarity=0.602  Sum_probs=77.8

Q ss_pred             ccccccCC--CCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccC
Q 008017          145 RKKVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFS  220 (581)
Q Consensus       145 ~~kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~  220 (581)
                      ++++|.|+  .|       ++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            46899998  47       99999999999999999999999999999999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHhhhhh
Q 008017          221 RRDSFITHRAFCDV  234 (581)
Q Consensus       221 ~~~~L~~H~~~h~~  234 (581)
                      +...|.+|+++|..
T Consensus        74 ~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           74 RSDERKRHTKIHLR   87 (90)
T ss_dssp             SHHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999999864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.7e-17  Score=142.44  Aligned_cols=96  Identities=14%  Similarity=0.195  Sum_probs=87.4

Q ss_pred             hHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhc--ccCCcccc-ccccCCcc--C
Q 008017          120 DQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSR--KHGEKKWK-CEKCSKKY--A  194 (581)
Q Consensus       120 ~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~--H~gekp~~-C~~Cgk~F--~  194 (581)
                      ...|.+|+++|.             ++++|.|.+|       ++.|..+..|..|++.  |.+++++. |.+|++.|  .
T Consensus         4 ~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             chhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            456778888887             8999999999       9999999999999999  88787765 99999999  8


Q ss_pred             ChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhhhh
Q 008017          195 VQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCDVL  235 (581)
Q Consensus       195 ~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  235 (581)
                      ....|.+|+++ +++++|.|. |++.|.+...|.+|++.|+..
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            99999999999 889999999 999999999999999998743

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.60  E-value=6.1e-16  Score=126.39  Aligned_cols=79  Identities=27%  Similarity=0.569  Sum_probs=76.4

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHH
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSF  225 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L  225 (581)
                      +|.|.+|       ++.|.....|..|++.|.++++|.|.+|++.|.....|.+|+++ +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899999       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHhhhh
Q 008017          226 ITHRAFCD  233 (581)
Q Consensus       226 ~~H~~~h~  233 (581)
                      .+|+++|+
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.3e-15  Score=131.79  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=84.3

Q ss_pred             CCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc
Q 008017           58 SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK  137 (581)
Q Consensus        58 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~  137 (581)
                      ...+.+.|.|.+|++.|.....|..|++.|.                 ++|.|.+|++.|.....|.+|++ |.      
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~-----------------~~~~C~~C~~~f~~~~~l~~H~~-H~------   65 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----------------NAAVCPYCSLRFFSPELKQEHES-KC------   65 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH-----------------HSBCCTTTCCCBSSHHHHHHHHH-HC------
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHCC-----------------CCccCCCCCCccCCHHHHHHHHH-cC------
Confidence            4456678999999999999999999999873                 37999999999999999999996 87      


Q ss_pred             cccccccccccccCCCCCccCCCCCCcccCchhhhhhhh-cccCCcccccc
Q 008017          138 QRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCE  187 (581)
Q Consensus       138 ~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~-~H~gekp~~C~  187 (581)
                             ++++|+|.+|       ++.|..+..|.+|++ .|.++++|.|.
T Consensus        66 -------~~~~~~C~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           66 -------EYKKLTCLEC-------MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -------STGGGEEGGG-------TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -------CCCCccCccc-------cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence                   8999999999       999999999999997 99999999885

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.7e-15  Score=127.51  Aligned_cols=82  Identities=24%  Similarity=0.488  Sum_probs=77.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCC--Cceeec-CCCccC
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT--REYKCD-CGKLFS  220 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge--kpy~C~-Cgk~F~  220 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            7899999999       99999999999999999999999999999999999999999999 665  899999 999999


Q ss_pred             ChhHHHHHHh-hhh
Q 008017          221 RRDSFITHRA-FCD  233 (581)
Q Consensus       221 ~~~~L~~H~~-~h~  233 (581)
                      +...|.+|++ .|.
T Consensus        77 ~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           77 RPDHLNGHIKQVHS   90 (95)
T ss_dssp             SHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHhcC
Confidence            9999999997 453

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.54  E-value=4e-15  Score=123.56  Aligned_cols=81  Identities=22%  Similarity=0.580  Sum_probs=54.2

Q ss_pred             CCccccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCC--CCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          105 TNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       105 ~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      .+.|.|.+  |++.|.....|..|+++|.             ++++|.|+  .|       ++.|.....|..|++.|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            34566766  7777777777777776665             56666665  35       6666666666666666666


Q ss_pred             CccccccccCCccCChhHHHHHHhh
Q 008017          181 EKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       181 ekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +++|.|.+|++.|.....|..|+++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHh
Confidence            6666666666666666666666654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.54  E-value=7.5e-15  Score=124.63  Aligned_cols=83  Identities=20%  Similarity=0.503  Sum_probs=67.5

Q ss_pred             CCCccccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhccc
Q 008017          104 ATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       104 ~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      .+++|.|.+  |++.|.....|.+|+++|.             ++++|.|.+  |       ++.|.....|.+|+++|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhC
Confidence            356788886  8888888888888888887             778888864  6       888888888888888888


Q ss_pred             CCccccccccCCccCChhHHHHHHhhh
Q 008017          180 GEKKWKCEKCSKKYAVQSDWKAHSKIC  206 (581)
Q Consensus       180 gekp~~C~~Cgk~F~~~s~L~~H~~~~  206 (581)
                      ++++|+|.+|++.|.....|..|+++|
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            888888888888888888888888763

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.51  E-value=1.5e-14  Score=120.01  Aligned_cols=81  Identities=26%  Similarity=0.560  Sum_probs=76.6

Q ss_pred             ccccccCCC--CCccCCCCCCcccCchhhhhhhhcccCCcccccc--ccCCccCChhHHHHHHhh-hCCCceeec-CCCc
Q 008017          145 RKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKL  218 (581)
Q Consensus       145 ~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~  218 (581)
                      +.++|.|.+  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|.+|+++ +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            457899999  7       99999999999999999999999997  599999999999999999 899999999 9999


Q ss_pred             cCChhHHHHHHhhh
Q 008017          219 FSRRDSFITHRAFC  232 (581)
Q Consensus       219 F~~~~~L~~H~~~h  232 (581)
                      |.....|.+|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999987

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.50  E-value=1.2e-15  Score=127.35  Aligned_cols=83  Identities=23%  Similarity=0.343  Sum_probs=78.2

Q ss_pred             cccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhhhCCCceeec-CCCccCChhH
Q 008017          146 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDS  224 (581)
Q Consensus       146 ~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~  224 (581)
                      +++|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|++++..++|.|. |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            479999999       99999999999999999999999999999999999999999999557999999 9999999999


Q ss_pred             HHHHHhhhhhh
Q 008017          225 FITHRAFCDVL  235 (581)
Q Consensus       225 L~~H~~~h~~~  235 (581)
                      |.+|++.++..
T Consensus        74 L~~H~~~~h~~   84 (88)
T 1llm_C           74 LENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999887743

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=120.23  Aligned_cols=86  Identities=16%  Similarity=0.250  Sum_probs=79.0

Q ss_pred             CCCCCccCCc--ccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccC--CCCCccCChHHHHHHHhhcCCCcc
Q 008017           60 PGNPGINFSL--FNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWK  135 (581)
Q Consensus        60 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~  135 (581)
                      .....|.|.+  |++.|.....|..|++.|.+               +++|.|.  .|++.|.....|.+|+++|.    
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----   71 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTG---------------EKPYKCTWEGCDWRFARSDELTRHYRKHT----   71 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSC---------------CCCEECCSSSCCCEESSHHHHHHHHHHHT----
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCC---------------CCCeeCCCCCCCCccCCHHHHHHHHHHhC----
Confidence            3455799997  99999999999999999886               6789996  69999999999999999998    


Q ss_pred             cccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          136 LKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       136 ~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                               ++++|.|.+|       ++.|.....|.+|+++|++
T Consensus        72 ---------~~~~~~C~~C-------~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           72 ---------GAKPFQCGVC-------NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             ---------SCCSCBCSSS-------CCBCSSHHHHHHHHHHHCC
T ss_pred             ---------CCCCeECCCC-------cCccCCHHHHHHHHHHhCC
Confidence                     8999999999       9999999999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.49  E-value=1.9e-15  Score=126.12  Aligned_cols=80  Identities=21%  Similarity=0.327  Sum_probs=76.6

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|++.|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            478999999999999999999999998             8999999999       9999999999999999985 899


Q ss_pred             cccccCCccCChhHHHHHHhh
Q 008017          185 KCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       185 ~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|..|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.49  E-value=9.6e-15  Score=114.18  Aligned_cols=58  Identities=24%  Similarity=0.585  Sum_probs=45.4

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      ||||+|++|+|.|.....|.+|+++|.             ++++|.|.+|       +++|.....|.+|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            677888888888888888888888877             7788888887       788888888888888877764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.9e-14  Score=115.88  Aligned_cols=72  Identities=21%  Similarity=0.489  Sum_probs=60.5

Q ss_pred             cCCCccccCC--CCCccCChHHHHHHHh-hcCCCcccccccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhc
Q 008017          103 MATNRFLCEI--CNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSR  177 (581)
Q Consensus       103 ~~~k~f~C~~--Cgk~F~~~s~L~~H~r-~H~~p~~~~~~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~  177 (581)
                      .++++|.|..  |++.|.+...|.+|++ .|.             ++++|.|.+  |       ++.|..+..|.+|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            3467888886  8888888888888888 676             788888888  7       8888888888888888


Q ss_pred             ccCCccccccccCCccC
Q 008017          178 KHGEKKWKCEKCSKKYA  194 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~  194 (581)
                      |+++++|+|.+|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            88888888888888873

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.45  E-value=4.8e-15  Score=132.37  Aligned_cols=120  Identities=14%  Similarity=0.199  Sum_probs=88.7

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      .+.+.++|.|..++...  ...+..|.+.+.          .....+.+.|++|.. .-.+.+.|.....|..|+ .|++
T Consensus         6 ~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~----------l~~~~~~~~c~~~~~-~~~~~~~~~~~~~l~~h~-~h~~   71 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFI--HVTLEELKRYHQ----------LTPEQKRLIRAIVKT-LIHNPQLLDESSYLYRLL-ASKA   71 (129)
T ss_dssp             CCTTCCGGGGCSSCEEE--ECCHHHHHHHTT----------SCHHHHHHHHHHHHH-HHHCGGGTTTHHHHHHHH-HHHH
T ss_pred             hcccccccccccCCeee--eecHHhhhcccc----------CChhhCcccchhhhc-ccCCCcccCCHHHHHHHH-HhCC
Confidence            34568899988755432  233445544442          011467788888711 001124445667777777 6999


Q ss_pred             CccccccccCCccCChhHHHHHHhhhCCCceeec-CCCccCChhHHHHHHhhhhhh
Q 008017          181 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCDVL  235 (581)
Q Consensus       181 ekp~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  235 (581)
                      +++|.|++|++.|.....|.+|+++| +++|.|. |++.|.+...|.+|++.|+..
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999999999999 9999999 999999999999999998744

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3e-14  Score=117.45  Aligned_cols=74  Identities=18%  Similarity=0.343  Sum_probs=55.9

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcc
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKK  183 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp  183 (581)
                      ++++|.|.+|++.|.....|.+|++.|+..         ...+++|.|.+|       ++.|..+..|..|+++|+++++
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~---------~~~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~~~~   75 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDP---------NFVPAAFVCSKC-------GKTFTRRNTMARHADNCAGPDG   75 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCS---------SCCCCCEECSSS-------CCEESCHHHHHHHHHHCCCCCS
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------cCCCcceECCCC-------CChhCCHHHHHHHHHHccCCCC
Confidence            377888888888888888888888776510         001267888888       8888888888888888888888


Q ss_pred             ccccccCCcc
Q 008017          184 WKCEKCSKKY  193 (581)
Q Consensus       184 ~~C~~Cgk~F  193 (581)
                      +.|..|+..|
T Consensus        76 ~~~~~~~~~~   85 (86)
T 1x6h_A           76 VEGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCCC
T ss_pred             cccCCCCCCC
Confidence            8888887765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.44  E-value=3.5e-14  Score=111.01  Aligned_cols=53  Identities=23%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             cccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          146 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       146 ~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ||||+|.+|       ++.|.....|.+|+++|++++||+|.+|++.|...+.|.+|+++
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc
Confidence            456666666       66666666666666666666666666666666666666666666

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.6e-14  Score=116.97  Aligned_cols=78  Identities=21%  Similarity=0.402  Sum_probs=66.6

Q ss_pred             HHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC----ccccccccCCccCChh
Q 008017          122 NLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE----KKWKCEKCSKKYAVQS  197 (581)
Q Consensus       122 ~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge----kp~~C~~Cgk~F~~~s  197 (581)
                      .|.+|+++|.             ++++|.|.+|       ++.|.....|.+|++.|+.+    ++|+|.+|++.|....
T Consensus         2 s~~~H~~~H~-------------~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~   61 (86)
T 1x6h_A            2 SSGSSGRTHT-------------GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN   61 (86)
T ss_dssp             TTTCCSTTCC-------------CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred             Ccccccceec-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence            3556778887             7889999998       89999999999998877765    7899999999999999


Q ss_pred             HHHHHHhh-hCCCceeec-CCCcc
Q 008017          198 DWKAHSKI-CGTREYKCD-CGKLF  219 (581)
Q Consensus       198 ~L~~H~~~-~gekpy~C~-Cgk~F  219 (581)
                      .|..|+++ +++++|.|. |+..|
T Consensus        62 ~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           62 TMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHHccCCCCcccCCCCCCC
Confidence            99999998 888899998 88765

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.41  E-value=8.9e-14  Score=114.01  Aligned_cols=76  Identities=25%  Similarity=0.538  Sum_probs=64.1

Q ss_pred             cccc--CCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          107 RFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       107 ~f~C--~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      +|.|  ++|++.|.....|..|+++|.             ++++|.|++  |       ++.|.....|.+|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            5788  888888888888888888887             778888887  7       8888888888888888887  


Q ss_pred             cccccc---cCCccCChhHHHHHHhh
Q 008017          183 KWKCEK---CSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~---Cgk~F~~~s~L~~H~~~  205 (581)
                       |.|.+   |++.|.....|.+|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             88888   88888888888888876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.9e-13  Score=110.95  Aligned_cols=65  Identities=26%  Similarity=0.459  Sum_probs=55.6

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|       ++.|.....|.+|+++|+++
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhCCC
Confidence            455788888888888888888888888887             7888888888       88888888888888888888


Q ss_pred             ccccc
Q 008017          182 KKWKC  186 (581)
Q Consensus       182 kp~~C  186 (581)
                      +||+|
T Consensus        73 ~p~~C   77 (77)
T 2cot_A           73 GPSSG   77 (77)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88887

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3e-13  Score=115.47  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             CCcccCchhhhhhhhcccCCccccccccCCccC-ChhHHHHHHhh-hC-CCceeec-CCCccCChhHHHHHHhhhhhh
Q 008017          162 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYA-VQSDWKAHSKI-CG-TREYKCD-CGKLFSRRDSFITHRAFCDVL  235 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~-~~s~L~~H~~~-~g-ekpy~C~-Cgk~F~~~~~L~~H~~~h~~~  235 (581)
                      ...+.....+..|+++|.++++|+|.+|++.|. ....|++|+++ ++ +++|.|. |++.|.++..|.+|+++|+..
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            456677788999999999999999999999999 99999999999 77 8999999 999999999999999998743

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=1.1e-12  Score=106.47  Aligned_cols=66  Identities=15%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             CCCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccc
Q 008017           58 SLPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK  137 (581)
Q Consensus        58 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~  137 (581)
                      ...+.+.|.|.+|++.|.....|..|++.|.+               +++|.|++|++.|.....|.+|+++|.      
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~C~~~f~~~~~L~~H~~~H~------   70 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG---------------EKPYKCDECGKAFIQRSHLIGHHRVHT------   70 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC---------------SCSEECSSSCCEESSHHHHHHHGGGSC------
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCC---------------CcCeeCCCCCCccCCHHHHHHHHHHhC------
Confidence            34456789999999999999999999999876               678999999999999999999999998      


Q ss_pred             cccccccccccccC
Q 008017          138 QRTNKVERKKVYVC  151 (581)
Q Consensus       138 ~~~~~~~~~kpy~C  151 (581)
                             ++++|+|
T Consensus        71 -------~~~p~~C   77 (77)
T 2cot_A           71 -------GSGPSSG   77 (77)
T ss_dssp             -------CCCCCCC
T ss_pred             -------CCCCCCC
Confidence                   8999988

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3e-13  Score=109.81  Aligned_cols=69  Identities=22%  Similarity=0.453  Sum_probs=65.5

Q ss_pred             ccccccCCC--CCccCCCCCCcccCchhhhhhhh-cccCCccccccc--cCCccCChhHHHHHHhh-hCCCceeec-CCC
Q 008017          145 RKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYKCD-CGK  217 (581)
Q Consensus       145 ~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~-~H~gekp~~C~~--Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk  217 (581)
                      ++++|.|..  |       ++.|..+..|..|++ .|.++++|+|.+  |++.|.....|.+|+++ +++++|.|. |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            678999987  7       999999999999999 799999999999  99999999999999999 899999999 999


Q ss_pred             ccC
Q 008017          218 LFS  220 (581)
Q Consensus       218 ~F~  220 (581)
                      .|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.35  E-value=1.3e-13  Score=123.03  Aligned_cols=113  Identities=13%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             CCCCCCccCCcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCCCCCccC------ChHHHHHHHhhcCC
Q 008017           59 LPGNPGINFSLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEICNKGFQ------RDQNLQLHRRGHNL  132 (581)
Q Consensus        59 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~------~~s~L~~H~r~H~~  132 (581)
                      .++.+.|.|..++....  ..+..|.+.+....            .++.|.|++|.+.|.      ....|..|+ .|+ 
T Consensus         7 ~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~------------~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-   70 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIH--VTLEELKRYHQLTP------------EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-   70 (129)
T ss_dssp             CTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCH------------HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-
T ss_pred             cccccccccccCCeeee--ecHHhhhccccCCh------------hhCcccchhhhcccCCCcccCCHHHHHHHH-HhC-
Confidence            34566787776554432  23444444433211            146688988877665      667777777 466 


Q ss_pred             CcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCC
Q 008017          133 PWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       133 p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                                  ++++|.|.+|       ++.|.....|..|+++|  +++|.|++|++.|.....|.+|+++ ++.
T Consensus        71 ------------~~~~~~C~~C-------~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           71 ------------AISQFVCPLC-------LMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ------------HHCSEECTTT-------CCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ------------CCCCeECCCC-------CcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence                        8999999999       99999999999999999  8999999999999999999999999 654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.35  E-value=3.9e-13  Score=110.12  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             CccC--CcccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCC--CCCccCChHHHHHHHhhcCCCcccccc
Q 008017           64 GINF--SLFNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQR  139 (581)
Q Consensus        64 ~~~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~  139 (581)
                      .|.|  ..|++.|.....|..|++.|.+               +++|.|++  |++.|.+...|.+|+++|.        
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~---------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------   57 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ---------------QLPYECPHEGCDKRFSLPSRLKRHEKVHA--------   57 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT---------------TCCEECCSTTCCCEESSHHHHHHHHHHHH--------
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC---------------CCCeeCCCCCCcCccCCHHHHHHHHHHhC--------
Confidence            3789  9999999999999999999886               67899998  9999999999999999997        


Q ss_pred             cccccccccccCCC---CCccCCCCCCcccCchhhhhhhhccc
Q 008017          140 TNKVERKKVYVCPE---PTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       140 ~~~~~~~kpy~C~~---C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                           +   |.|.+   |       ++.|.....|.+|+++|+
T Consensus        58 -----~---~~C~~~~~C-------~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           58 -----G---YPCKKDDSC-------SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             -----S---EECCSCSSC-------CCEESSHHHHHHHHHHCC
T ss_pred             -----C---CCCCCCCCC-------CCccCCHHHHHHHHHhcC
Confidence                 4   99999   7       999999999999999885

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=3.1e-13  Score=117.05  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHh-hcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhh-hhccc
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKH-FSRKH  179 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r-~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H-~~~H~  179 (581)
                      ..++++|.|++|++.|.....|.+|++ +|..          ..++++|.|.+|       ++.|..+..|.+| +++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----------~~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----------VVLNSSYVCVEC-------NFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSS----------CCCSCCEEETTT-------TEEESSTHHHHTHHHHTST
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----------CCCCCCcCCCCC-------CcccCCHHHHHHHHHHhcC
Confidence            356888999999999999999999987 4730          005788999998       8999999999999 78899


Q ss_pred             CCccccccccCC
Q 008017          180 GEKKWKCEKCSK  191 (581)
Q Consensus       180 gekp~~C~~Cgk  191 (581)
                      +++||+|.++.+
T Consensus        76 gekpy~C~~~~~   87 (102)
T 2ghf_A           76 GEENFKLTMVKR   87 (102)
T ss_dssp             TCCCEEEEECCC
T ss_pred             CCCCeeCCcccC
Confidence            999999987543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.9e-13  Score=116.78  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=72.6

Q ss_pred             CccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCccc-CchhhhhhhhcccC-CccccccccCCc
Q 008017          115 KGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALG-DLTGIKKHFSRKHG-EKKWKCEKCSKK  192 (581)
Q Consensus       115 k~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~-~~s~L~~H~~~H~g-ekp~~C~~Cgk~  192 (581)
                      ..+.....+..|+++|.             ++++|.|.+|       ++.|. .+..|++|+++|++ +++|+|.+|++.
T Consensus         4 ~s~~~~~~~~~h~~~h~-------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIH-------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCCSCSHHHHTTT-------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCCcHHHHHHHhc-------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            34566677889999998             8999999999       99999 99999999999999 999999999999


Q ss_pred             cCChhHHHHHHhh-hCCCceeec
Q 008017          193 YAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       193 F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      |.....|.+|+++ ++++++...
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999 889886554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.32  E-value=8.4e-13  Score=106.24  Aligned_cols=64  Identities=23%  Similarity=0.442  Sum_probs=51.9

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      .+.++++|.|++|++.|.....|.+|+++|.             ++++|+|.+|       ++.|..+..|.+|+++|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcCC
Confidence            3455778888888888888888888888887             7788888888       8888888888888888888


Q ss_pred             Cccc
Q 008017          181 EKKW  184 (581)
Q Consensus       181 ekp~  184 (581)
                      ++||
T Consensus        71 ~kp~   74 (74)
T 2lce_A           71 EKPY   74 (74)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8775

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=8.2e-13  Score=107.12  Aligned_cols=66  Identities=17%  Similarity=0.355  Sum_probs=59.7

Q ss_pred             hhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCC--Cceeec-CCCccCChhHHHHHHhhhhhh
Q 008017          170 GIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT--REYKCD-CGKLFSRRDSFITHRAFCDVL  235 (581)
Q Consensus       170 ~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge--kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  235 (581)
                      .|.+|+++|+++++|+|++|++.|.....|.+|++. |.+  ++|.|. |++.|.+...|.+|++.+|..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            367899999999999999999999999999999985 543  899999 999999999999999988743

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=9.9e-13  Score=112.37  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=60.7

Q ss_pred             CCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcc-cCchhhhhhhhcccCCccccccccCCc
Q 008017          114 NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRAL-GDLTGIKKHFSRKHGEKKWKCEKCSKK  192 (581)
Q Consensus       114 gk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F-~~~s~L~~H~~~H~gekp~~C~~Cgk~  192 (581)
                      ...|.....|..|++.|.             ++++|.|++|       ++.| ..+..|+.|+++| ++++|+|.+|+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~   71 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQ   71 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCC
T ss_pred             CCCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCe
Confidence            345677778888888776             7788888888       8888 7888888888888 8888888888888


Q ss_pred             cCChhHHHHH-HhhhCCCce
Q 008017          193 YAVQSDWKAH-SKICGTREY  211 (581)
Q Consensus       193 F~~~s~L~~H-~~~~gekpy  211 (581)
                      |.....|+.| +++|.+++|
T Consensus        72 F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           72 LRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSHHHHHHHHHHHTCCCSS
T ss_pred             eCCHHHHHHHhHHhcCCCCC
Confidence            8888888888 666666655

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=2.3e-12  Score=102.53  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=45.4

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|       ++.|..+..|.+|+++|+++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhCC
Confidence            445677777777777777777777777776             6677777777       77777777777777777776


Q ss_pred             ccc
Q 008017          182 KKW  184 (581)
Q Consensus       182 kp~  184 (581)
                      ++.
T Consensus        64 ~p~   66 (70)
T 1x5w_A           64 MSG   66 (70)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=2.6e-12  Score=109.78  Aligned_cols=72  Identities=15%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             CCcccCchhhhhhhhcccCCccccccccCCcc-CChhHHHHHHhhhCCCceeec-CCCccCChhHHHHH-Hhhhh
Q 008017          162 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKY-AVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITH-RAFCD  233 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F-~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~L~~H-~~~h~  233 (581)
                      ...|.....|..|++.|.++++|+|++|++.| .....|+.|+++|++++|.|. |++.|..+..|.+| +++|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            34667788899999999999999999999999 999999999999988999999 99999999999999 87774

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=3.4e-12  Score=102.17  Aligned_cols=60  Identities=32%  Similarity=0.671  Sum_probs=50.9

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +.++|.++++|+|++|++.|.....|.+|+++ +++++|.|. |++.|.+...|.+|+++|+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            45678888888888888888888888888888 778888888 8888888888888888876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=2.9e-12  Score=110.92  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             cccccccCCCCCccCCCCCCcccCchhhhhhhh-cc---cCCccccccccCCccCChhHHHHH-Hhh-hCCCceeec-CC
Q 008017          144 ERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RK---HGEKKWKCEKCSKKYAVQSDWKAH-SKI-CGTREYKCD-CG  216 (581)
Q Consensus       144 ~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~-~H---~gekp~~C~~Cgk~F~~~s~L~~H-~~~-~gekpy~C~-Cg  216 (581)
                      .++++|.|.+|       ++.|..+..|.+|++ .|   .++++|+|++|++.|.....|.+| +++ .++++|.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            38999999999       999999999999998 58   578999999999999999999999 788 899999998 54

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.24  E-value=4.2e-12  Score=102.06  Aligned_cols=60  Identities=23%  Similarity=0.554  Sum_probs=49.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCce
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|.+|++.|.....|.+|+++ ++++||
T Consensus        14 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           14 SDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            6788888888       88888888888888888888888888888888888888888888 677765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=5.2e-12  Score=98.98  Aligned_cols=59  Identities=29%  Similarity=0.580  Sum_probs=48.4

Q ss_pred             hhcccCCccccccccCCccCChhHHHHHHhh-h--CCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          175 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C--GTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       175 ~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~--gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +++|.++++|.|++|++.|.....|.+|+++ |  ++++|.|. |++.|.+...|.+|++.++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            3567888888888888888888888888887 5  67888888 8888888888888888776

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=6e-12  Score=100.73  Aligned_cols=61  Identities=26%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      .|.++++|.|++|++.|.....|.+|+++|.             ++++|+|.+|       ++.|..+..|.+|+++|++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHHhcCC
Confidence            4455666777777777777777777776665             5666666666       6666666666666666665


Q ss_pred             C
Q 008017          181 E  181 (581)
Q Consensus       181 e  181 (581)
                      +
T Consensus        68 ~   68 (72)
T 1x6e_A           68 G   68 (72)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=103.24  Aligned_cols=59  Identities=15%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             hhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          175 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       175 ~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +..+..+++|.|++|++.|.....|.+|+++ +++++|.|. |++.|.++..|.+|++..|
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            3456667778888888888888888888887 778888888 8888888888888865443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.19  E-value=9.6e-12  Score=98.85  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=39.3

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  210 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekp  210 (581)
                      ++++|.|.+|       ++.|.....|.+|+++|+++++|+|.+|++.|.....|.+|+++ +++++
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            5666666666       66666666666666666666666666666666666666666666 55554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.18  E-value=1.7e-11  Score=93.01  Aligned_cols=53  Identities=21%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          181 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       181 ekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +++|+|.+|++.|.....|..|+++ +++++|.|. |++.|.....|.+|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4555566666666666666666555 555556665 6666666666666655543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=102.66  Aligned_cols=61  Identities=18%  Similarity=0.366  Sum_probs=44.7

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhh-hcccC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHG  180 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~-~~H~g  180 (581)
                      +...++|.|++|+|.|.+...|.+|+++|+             ++++|.|.+|       ++.|..+..|.+|+ +.|.+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKYC-------PATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTTS-------SCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCCC-------CCEeCCHHHHHHhCcccCcC
Confidence            344667778888888888888888877777             7777777777       77777777777775 45665


Q ss_pred             Cc
Q 008017          181 EK  182 (581)
Q Consensus       181 ek  182 (581)
                      |+
T Consensus        83 E~   84 (85)
T 2lv2_A           83 EN   84 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=98.28  Aligned_cols=58  Identities=24%  Similarity=0.520  Sum_probs=50.3

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh-hC---CCceeec-CCCccCChhHHHHHHhhhhh
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG---TREYKCD-CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~g---ekpy~C~-Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      .|+++++|+|.+|++.|.....|.+|+++ ++   +++|.|. |++.|.....|.+|++.+|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            37888999999999999999999999988 53   7899999 99999999999999976663

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=5.6e-12  Score=102.14  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             HHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhh-cccCC-ccccccccCCccCChhHHH
Q 008017          123 LQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGE-KKWKCEKCSKKYAVQSDWK  200 (581)
Q Consensus       123 L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~-~H~ge-kp~~C~~Cgk~F~~~s~L~  200 (581)
                      |.+|+++|.             ++++|.|.+|       ++.|..+..|.+|++ .|.++ ++|+|++|++.|.....|.
T Consensus         3 ~~~H~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~   62 (77)
T 2ct1_A            3 SGSSGRTHS-------------GEKPYECYIC-------HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG   62 (77)
T ss_dssp             CCCCCCCCS-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHH
T ss_pred             CCccccccC-------------CCCCeECCCc-------CchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHH
Confidence            456778887             8999999999       999999999999998 67764 8999999999999999999


Q ss_pred             HHHhh-hCC
Q 008017          201 AHSKI-CGT  208 (581)
Q Consensus       201 ~H~~~-~ge  208 (581)
                      +|+++ |+.
T Consensus        63 ~H~~~~H~~   71 (77)
T 2ct1_A           63 VHLRKQHSY   71 (77)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhCCC
Confidence            99998 543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=5.5e-13  Score=106.13  Aligned_cols=58  Identities=17%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      +++|.|++|++.|.....|..                    +++|.|.+|       ++.|.....|..|+++|+++++|
T Consensus        16 ~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A           16 DRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             CSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             CCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHHHHHHHhhcCCCCC
Confidence            667777777777777666553                    356777777       77777777777777777777777


Q ss_pred             ccccc
Q 008017          185 KCEKC  189 (581)
Q Consensus       185 ~C~~C  189 (581)
                      +|++|
T Consensus        69 ~C~~C   73 (73)
T 2ctu_A           69 GPSSG   73 (73)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            77776

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.13  E-value=3.2e-11  Score=91.48  Aligned_cols=56  Identities=23%  Similarity=0.454  Sum_probs=39.9

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      +|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            4677777777777777777777776             6677777777       777777777777777776654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.13  E-value=2.2e-11  Score=92.34  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=49.3

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++
T Consensus         1 g~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            4689999999       99999999999999999999999999999999999999999988

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.9e-11  Score=98.03  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccc---cccccCCCCCccCCCCCCcccCchhhhhhh-hc
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVER---KKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SR  177 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~---~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~-~~  177 (581)
                      |.++++|.|++|++.|.....|.+|+++|.             +   +++|.|.+|       ++.|..+..|.+|+ +.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~   61 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHA-------------ETVAALRFPCEFC-------GKRFEKPDSVAAHRSKS   61 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHH-------------HHTTTCCEECTTT-------CCEESSHHHHHHHHHHT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhh-------------ccCCCcccCCCCC-------CchhCCHHHHHHHHHHh
Confidence            455677777777777777777777777775             3   567777777       77777777777777 34


Q ss_pred             ccCCccccc
Q 008017          178 KHGEKKWKC  186 (581)
Q Consensus       178 H~gekp~~C  186 (581)
                      |.++++...
T Consensus        62 H~~~~~~~~   70 (78)
T 2d9h_A           62 HPALLLAPQ   70 (78)
T ss_dssp             STTTSSCCS
T ss_pred             CCCCCCCcc
Confidence            555555443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=9.9e-13  Score=104.64  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             hHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHH
Q 008017          120 DQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDW  199 (581)
Q Consensus       120 ~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L  199 (581)
                      ...|..|+++|.             ++++|.|.+|       ++.|.....|..       +++|.|.+|++.|.....|
T Consensus         3 ~~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSS
T ss_pred             chhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHH
Confidence            456778888887             8999999999       999999999887       7899999999999999999


Q ss_pred             HHHHhh-hCCCceeec-C
Q 008017          200 KAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       200 ~~H~~~-~gekpy~C~-C  215 (581)
                      .+|+++ +++++|.|. |
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999999 889999998 7

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.09  E-value=3.7e-11  Score=94.02  Aligned_cols=44  Identities=25%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             CCcccCchhhhhhhhc-c-cCCccccccccCCccCChhHHHHHHhh
Q 008017          162 SRALGDLTGIKKHFSR-K-HGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~-H-~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++.|.....|..|++. | .++++|.|++|++.|.....|.+|+++
T Consensus        17 ~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A           17 SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            4444444444444443 3 244444444444444444444444444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=95.25  Aligned_cols=73  Identities=15%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CCCCccCCcccccccChhHHHHHHhh-ccCCChhhhhcCcccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccc
Q 008017           61 GNPGINFSLFNFIFFQFWGLIDFVLF-ESDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR  139 (581)
Q Consensus        61 ~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~~~~~~~~~~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~  139 (581)
                      ....|.|.+|++.|..+..|.+|++. |.+......       ..-+.|.|++|++.|.....|.+|+++|.        
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~-------~~c~~~~C~~C~k~f~~~~~L~~H~~~H~--------   86 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN-------HVCYWEECPREGKSFKAKYKLVNHIRVHT--------   86 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSC-------CCCCCTTCSSTTCCCSSHHHHHHHHHHHH--------
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCc-------cceeccCCCCCCcccCCHHHHHHHHHhcC--------
Confidence            34467899999999999999999998 665221000       00123999999999999999999999998        


Q ss_pred             cccccccccccCCC
Q 008017          140 TNKVERKKVYVCPE  153 (581)
Q Consensus       140 ~~~~~~~kpy~C~~  153 (581)
                           ++++|.|+.
T Consensus        87 -----~~k~~~C~~   95 (95)
T 2ej4_A           87 -----GEKSGPSSG   95 (95)
T ss_dssp             -----TCCCCSSCC
T ss_pred             -----CCCCCCCCC
Confidence                 899999963

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=9.9e-11  Score=93.46  Aligned_cols=62  Identities=21%  Similarity=0.561  Sum_probs=51.9

Q ss_pred             hhhhhh-cccCCcccccc--ccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhh
Q 008017          171 IKKHFS-RKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       171 L~~H~~-~H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      +..|+. .|.++++|.|.  .|++.|.....|.+|+++ +++++|.|. |++.|.+...|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            444543 57788999997  599999999999999988 888999999 999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=97.67  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             CccccCCCCCccCChHHHHHHHhh-cCCCccccccccccccccc--------ccCCCCCccCCCCCCcccCchhhhhhhh
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKVERKKV--------YVCPEPTCVHHDPSRALGDLTGIKKHFS  176 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~-H~~p~~~~~~~~~~~~~kp--------y~C~~C~C~~~~~~k~F~~~s~L~~H~~  176 (581)
                      ..|.|++|++.|.....|.+|+++ |.             ++++        |.|.+|       ++.|..+..|.+|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            457899999999999999999998 76             5555        677777       777777777777777


Q ss_pred             cccCCcccccc
Q 008017          177 RKHGEKKWKCE  187 (581)
Q Consensus       177 ~H~gekp~~C~  187 (581)
                      +|+++++|+|+
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            77777777775

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.05  E-value=9.1e-11  Score=88.89  Aligned_cols=51  Identities=20%  Similarity=0.434  Sum_probs=32.9

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ||.|.+|       ++.|.....|..|+++|+++++|.|++|++.|.....|.+|+++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH
Confidence            4566666       66666666666666666666666666666666666666666665

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=1.3e-10  Score=89.17  Aligned_cols=54  Identities=31%  Similarity=0.637  Sum_probs=32.9

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhh-hcccC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHG  180 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~-~~H~g  180 (581)
                      +|.|++|++.|.....|.+|+++|.             ++++|.|++|       ++.|..+..|.+|+ +.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCC
Confidence            5666666666666666666666665             5566666666       66666666666664 44544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=1.9e-10  Score=88.09  Aligned_cols=49  Identities=22%  Similarity=0.543  Sum_probs=30.5

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHH
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS  203 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~  203 (581)
                      +|.|.+|       ++.|.....|..|+++|+++++|.|.+|++.|.....|.+|+
T Consensus         2 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            5566665       666666666666666666666666666666666666666665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=4.6e-10  Score=89.55  Aligned_cols=56  Identities=21%  Similarity=0.435  Sum_probs=33.0

Q ss_pred             cCCCccccC--CCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcc
Q 008017          103 MATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus       103 ~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      .++++|.|+  .|++.|.....|.+|+++|.             ++++|.|++|       ++.|.....|.+|+++|
T Consensus        15 ~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCCC-------CchhCCHHHHHHHHHhc
Confidence            345556664  36666666666666666655             5556666665       56666666666665555

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=5.3e-10  Score=87.83  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=40.2

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCC-CCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP-EPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~-~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      .+++|.|++|++.|. ...|..|+++ .             ++++|.|+ +|       ++.|..+..|..|+++|...+
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhcccC
Confidence            356677777777777 7777777766 5             66777777 77       777777777777777666554


Q ss_pred             c
Q 008017          183 K  183 (581)
Q Consensus       183 p  183 (581)
                      +
T Consensus        65 ~   65 (66)
T 2eod_A           65 L   65 (66)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.7e-10  Score=80.94  Aligned_cols=44  Identities=20%  Similarity=0.318  Sum_probs=39.8

Q ss_pred             hhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          172 KKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       172 ~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      ++|+++|+++++|.|++|++.|.....|..|+++ +++++|.|. |
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3688999999999999999999999999999998 889999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.89  E-value=7.8e-10  Score=80.22  Aligned_cols=43  Identities=21%  Similarity=0.452  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8e-10  Score=79.97  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.5e-10  Score=79.90  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.1e-10  Score=80.03  Aligned_cols=43  Identities=26%  Similarity=0.428  Sum_probs=36.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 788888887 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.88  E-value=8.1e-10  Score=80.04  Aligned_cols=43  Identities=26%  Similarity=0.507  Sum_probs=37.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            578888888888888888888888888888888 788888887 6

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1e-09  Score=79.45  Aligned_cols=43  Identities=30%  Similarity=0.484  Sum_probs=39.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999988 788999998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.8e-10  Score=79.73  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588888888999999999999999999999888 788889887 6

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.87  E-value=7.9e-10  Score=80.10  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=37.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588888899999999999999999999999888 788899887 6

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.8e-10  Score=80.13  Aligned_cols=43  Identities=23%  Similarity=0.453  Sum_probs=37.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588888889999999999999999999999888 788889887 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8e-10  Score=80.05  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=38.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688889999999999999999999999999988 788999987 6

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.4e-10  Score=79.95  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=39.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999998 889999998 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=8.3e-10  Score=79.96  Aligned_cols=43  Identities=19%  Similarity=0.402  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=1e-09  Score=79.38  Aligned_cols=43  Identities=28%  Similarity=0.488  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588888889999999999999999999999888 788889887 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.86  E-value=7.3e-10  Score=80.17  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=37.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888888888898898888888888888888 788888887 6

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.5e-10  Score=79.93  Aligned_cols=43  Identities=26%  Similarity=0.459  Sum_probs=37.9

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888999999999999999999999999888 788899987 6

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.86  E-value=1.1e-09  Score=79.31  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=37.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478888888889998899989888888888888 788888887 6

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=9e-10  Score=79.68  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=37.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588888889999999999999999999999888 788889887 7

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.9e-10  Score=79.82  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=38.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999997 6

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.7e-10  Score=79.78  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=38.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.6e-10  Score=79.79  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=38.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588889999999999999999999999999888 788999987 7

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.85  E-value=3.4e-09  Score=84.23  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             CCCCCCccCCc--ccccccChhHHHHHHhhccCCChhhhhcCcccccCCCccccCC--CCCccCChHHHHHHHhhc
Q 008017           59 LPGNPGINFSL--FNFIFFQFWGLIDFVLFESDPDAEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus        59 ~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~k~~~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H  130 (581)
                      ......|.|.+  |++.|.....|.+|++.|.+               +++|.|.+  |++.|.....|.+|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~---------------~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG---------------EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSS---------------SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCC---------------CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34556899999  99999999999999999987               78899975  999999999999999886

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9.2e-10  Score=79.74  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=38.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999997 6

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.2e-09  Score=79.16  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=35.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377888888888888888888888888888888 778888887 6

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=8.4e-10  Score=80.04  Aligned_cols=43  Identities=19%  Similarity=0.399  Sum_probs=37.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888888888888898888888888888888 788888887 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.3e-10  Score=79.98  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=37.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588888899999999999999999999999888 788899987 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=78.65  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=35.6

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      |+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888 788888887 6

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1e-09  Score=79.64  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=36.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 778888887 6

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=78.83  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=35.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477788888888888888888888888888888 778888887 6

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.7e-10  Score=79.61  Aligned_cols=43  Identities=28%  Similarity=0.445  Sum_probs=36.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            478888888888888888888888888888888 778888887 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.8e-10  Score=79.49  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=38.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888999999999999999999999999888 788899987 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=9.6e-10  Score=79.55  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=37.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888888899999999999999999999888 788888887 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.7e-10  Score=79.61  Aligned_cols=43  Identities=28%  Similarity=0.425  Sum_probs=36.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 778888887 6

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=79.22  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=38.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999888 788999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.1e-10  Score=79.75  Aligned_cols=43  Identities=28%  Similarity=0.549  Sum_probs=38.5

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688899999999999999999999999999988 788999998 7

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.5e-09  Score=78.70  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=38.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478888999999999999999999999999988 788999998 7

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=78.91  Aligned_cols=43  Identities=23%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477788888888888888888888888888888 778888887 6

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.83  E-value=1.2e-09  Score=78.99  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 778888887 6

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=78.90  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=34.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477778888888888888888888888888877 677888887 6

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.3e-09  Score=78.88  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=36.9

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            588888889999999999999999999999888 788889887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.2e-09  Score=79.20  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.9e-09  Score=78.17  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHh-h-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~-~-~gekpy~C~-C  215 (581)
                      .|+++|.++++|+|.+|++.|.....|.+|++ + .++++|.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            47888888888888888888888888888888 7 778888887 6

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.81  E-value=2.7e-09  Score=84.89  Aligned_cols=56  Identities=20%  Similarity=0.438  Sum_probs=38.3

Q ss_pred             cCCCccccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC--CCccCCCCCCcccCchhhhhhhhcc
Q 008017          103 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE--PTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus       103 ~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~--C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      ...++|.|.+  |++.|.....|.+|+++|.             ++++|.|.+  |       ++.|..+..|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHhhcC
Confidence            3456677766  7777777777777777776             667777754  5       67777777777776654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=79.47  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=31.5

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466777777777777777777777777777777 667777776 5

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.7e-09  Score=78.33  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478888899999999999999999999999888 788899987 7

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.2e-09  Score=85.78  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc-ccCCccCChhHHHHHHhh
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE-KCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~-~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++++|.|.+|       ++.|. ...|..|+++ ++++||+|+ .|++.|..+..|..|+++
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            5678888887       88888 8888888877 788888888 888888888888888877

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.80  E-value=6e-10  Score=86.78  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=45.5

Q ss_pred             hhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHH
Q 008017          171 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFI  226 (581)
Q Consensus       171 L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~  226 (581)
                      |..|+++|+++++|+|++|++.|.....|.   ++ .++++|.|. |++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            678999999999999999999999988886   55 788999999 999998776543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.8e-09  Score=78.13  Aligned_cols=43  Identities=28%  Similarity=0.453  Sum_probs=36.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 788888887 6

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.80  E-value=1.8e-09  Score=78.23  Aligned_cols=43  Identities=16%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|.++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467778888888888888888888888888887 677888887 6

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.5e-09  Score=78.62  Aligned_cols=43  Identities=35%  Similarity=0.538  Sum_probs=36.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 778888887 6

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.4e-09  Score=77.62  Aligned_cols=43  Identities=28%  Similarity=0.448  Sum_probs=36.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      .|+++|.++++|+|++|++.|.....|.+|+++ +++++|.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            477888888888888888888888888888888 788888887 7

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.5e-09  Score=78.58  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCC-------CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.78  E-value=1.5e-09  Score=78.53  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.5e-09  Score=76.02  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=38.4

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             cCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            44556899999999999999999999999998             8999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.2e-09  Score=75.57  Aligned_cols=42  Identities=26%  Similarity=0.317  Sum_probs=38.3

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             ccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            34555899999999999999999999999998             8999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.76  E-value=1.5e-09  Score=78.63  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.8e-09  Score=78.07  Aligned_cols=38  Identities=16%  Similarity=0.085  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECREC-------GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTT-------CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.5e-09  Score=78.55  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVC-------GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCeeCCCc-------CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.9e-09  Score=75.72  Aligned_cols=42  Identities=24%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            44555899999999999999999999999998             8999999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.9e-09  Score=77.13  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=38.5

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            688999999999999999999999999999999 788999986

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=3.1e-09  Score=76.97  Aligned_cols=42  Identities=26%  Similarity=0.470  Sum_probs=36.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478888889999999999999999999999888 788888887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.2e-09  Score=77.65  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.75  E-value=1.5e-09  Score=78.43  Aligned_cols=38  Identities=16%  Similarity=0.136  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQC-------AKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.75  E-value=1.6e-09  Score=78.44  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.8e-09  Score=78.11  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2e-09  Score=77.99  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=5.4e-09  Score=75.50  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=38.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            34555899999999999999999999999998             8999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2e-09  Score=77.84  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.6e-09  Score=77.39  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.2e-09  Score=76.17  Aligned_cols=42  Identities=21%  Similarity=0.460  Sum_probs=37.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588889999999999999999999999999988 788999885

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.1e-09  Score=76.26  Aligned_cols=42  Identities=29%  Similarity=0.463  Sum_probs=37.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            588889999999999999999999999999988 788999885

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.75  E-value=6.8e-09  Score=75.12  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            345666899999999999999999999999998             8999999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.9e-09  Score=74.11  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      |+++|.++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67889999999999999999999999999998 788999884

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.8e-09  Score=74.66  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            34556899999999999999999999999998             8999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.74  E-value=2.2e-09  Score=77.75  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.5e-09  Score=77.46  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSEC-------GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCcCCCcc-------ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.74  E-value=4e-09  Score=79.34  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCcee
Q 008017          162 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYK  212 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~  212 (581)
                      ++.|.....|..|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            78899999999999999999999999999999999999999999 8889874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.2e-09  Score=76.25  Aligned_cols=42  Identities=26%  Similarity=0.560  Sum_probs=37.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            688889999999999999999999999999988 788999885

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.1e-09  Score=75.31  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=38.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            588899999999999999999999999999998 788999984

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.74  E-value=3.7e-09  Score=74.83  Aligned_cols=41  Identities=20%  Similarity=0.454  Sum_probs=36.1

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      |+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67888899999999999999999999999988 788899884

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.7e-09  Score=78.30  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.9e-09  Score=77.95  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2e-09  Score=77.92  Aligned_cols=38  Identities=13%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDIC-------GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSS-------CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=8.9e-09  Score=77.52  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHh-hcCCCcccccccccccccccccCCCCCccCCCCCCcccC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGD  167 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r-~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~  167 (581)
                      ..+.++++|.|++|++.|.....|.+|++ +|.             ++++|.|.+|       ++.|..
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            34667899999999999999999999997 898             8999999999       898865

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=7.2e-09  Score=74.92  Aligned_cols=42  Identities=29%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|+|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            45566899999999999999999999999998             8999999987

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.8e-09  Score=76.40  Aligned_cols=42  Identities=26%  Similarity=0.463  Sum_probs=38.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|.|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688899999999999999999999999999999 788999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.8e-09  Score=75.78  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=37.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999988 788899885

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=2.5e-09  Score=77.42  Aligned_cols=38  Identities=21%  Similarity=0.195  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            9 GEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.9e-09  Score=77.92  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|+.|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.9e-09  Score=78.05  Aligned_cols=45  Identities=18%  Similarity=0.168  Sum_probs=41.8

Q ss_pred             HHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          125 LHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       125 ~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      +|+++|.             ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGT-------------GEKPYICAEC-------GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTS-------------SCCSEECSSS-------CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCC-------------CCcCeECCCC-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677776             8999999999       9999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7.4e-09  Score=74.75  Aligned_cols=42  Identities=24%  Similarity=0.282  Sum_probs=38.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            34555899999999999999999999999998             8999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=77.96  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSIC-------GKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=4e-09  Score=79.43  Aligned_cols=44  Identities=16%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhh-cccCCccccccccCCccCC
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAV  195 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~-~H~gekp~~C~~Cgk~F~~  195 (581)
                      ++++|.|.+|       ++.|.....|.+|++ +|+++++|+|.+|++.|..
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            9 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            5666666666       666666666666665 6666666666666666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.6e-09  Score=78.45  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.6e-09  Score=78.47  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNEC-------GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCcCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.7e-09  Score=78.24  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNEC-------GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSS-------CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcC-------CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.1e-09  Score=75.30  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=38.5

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            688999999999999999999999999999999 788999984

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=2e-09  Score=78.06  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.5e-09  Score=76.00  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=37.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999988 788899885

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.7e-09  Score=74.75  Aligned_cols=41  Identities=20%  Similarity=0.501  Sum_probs=35.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478888888899999999999999999999888 78888887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.8e-09  Score=78.22  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHEC-------GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCC-------CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.7e-09  Score=78.33  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSS-------CCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.5e-09  Score=76.01  Aligned_cols=42  Identities=29%  Similarity=0.473  Sum_probs=36.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            578888899999999999999999999999888 788888885

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.72  E-value=2.8e-09  Score=77.03  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.3e-09  Score=77.48  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|++|       ++.|.....|.+|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYC-------GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCeECCCC-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.2e-09  Score=75.27  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=38.4

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            44556899999999999999999999999998             8999999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.2e-09  Score=76.11  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=37.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999988 788999885

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.72  E-value=4.2e-09  Score=76.27  Aligned_cols=42  Identities=26%  Similarity=0.544  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999988 788999885

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.5e-09  Score=74.51  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=39.6

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             ++++|+|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            456777999999999999999999999999998             8999999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.1e-09  Score=75.81  Aligned_cols=42  Identities=26%  Similarity=0.513  Sum_probs=36.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888999999999999999999999999888 788888885

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.3e-09  Score=75.62  Aligned_cols=42  Identities=26%  Similarity=0.452  Sum_probs=36.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478888888999999999999999999999888 788888885

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.2e-09  Score=76.26  Aligned_cols=42  Identities=26%  Similarity=0.500  Sum_probs=37.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999988 788999886

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.6e-09  Score=75.19  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578889999999999999999999999999988 788999885

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.1e-09  Score=77.83  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSEC-------GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCC-------CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=8.2e-09  Score=74.62  Aligned_cols=42  Identities=19%  Similarity=0.093  Sum_probs=38.4

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|+|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            44556899999999999999999999999998             8999999987

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.9e-09  Score=76.44  Aligned_cols=42  Identities=19%  Similarity=0.365  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 888999985

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.8e-09  Score=75.15  Aligned_cols=43  Identities=26%  Similarity=0.440  Sum_probs=39.0

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            345666899999999999999999999999998             8999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.5e-09  Score=77.40  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=36.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAEC-------GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.9e-09  Score=75.01  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=38.4

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            5 SSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            44556899999999999999999999999998             8999999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.8e-09  Score=75.75  Aligned_cols=42  Identities=26%  Similarity=0.480  Sum_probs=36.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            588888899999999999999999999999888 788888885

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.2e-08  Score=73.93  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHh-hcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r-~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|++|++.|.....|.+|++ +|.             ++++|.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            345556899999999999999999999999 998             8999999987

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.5e-09  Score=75.25  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478889999999999999999999999999988 788999885

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=5.4e-09  Score=75.66  Aligned_cols=42  Identities=19%  Similarity=0.411  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            488899999999999999999999999999988 788999885

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.4e-09  Score=75.22  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 788999984

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=5.1e-09  Score=74.96  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=38.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 788999884

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.9e-09  Score=75.73  Aligned_cols=42  Identities=24%  Similarity=0.471  Sum_probs=36.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888889999999999999999999999888 788888885

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.1e-09  Score=77.91  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNEC-------GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEcccc-------CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.4e-09  Score=75.60  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=37.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            588889999999999999999999999999888 788899885

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.8e-09  Score=75.75  Aligned_cols=42  Identities=26%  Similarity=0.532  Sum_probs=37.2

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588889999999999999999999999999988 788899885

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.5e-09  Score=77.37  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=41.9

Q ss_pred             HHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          125 LHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       125 ~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      +|+++|.             ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGS-------------GEKPFKCEEC-------GKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCC-------------CCCSEEETTT-------TEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCC-------------CCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777             8999999999       9999999999999999999999999988

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.9e-09  Score=77.19  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=37.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  189 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~C  189 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.9e-09  Score=75.47  Aligned_cols=42  Identities=21%  Similarity=0.437  Sum_probs=38.4

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|.++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 789999986

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6e-09  Score=75.26  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=37.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            588889999999999999999999999999998 888999885

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.6e-09  Score=73.89  Aligned_cols=40  Identities=28%  Similarity=0.523  Sum_probs=36.3

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      |+++|+++++|+|++|++.|.....|.+|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            77889999999999999999999999999988 88899987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=6e-09  Score=73.80  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=34.5

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      |+++|+++++|+|++|++.|.....|.+|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            67788888888888888888888888888888 78888877

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=5.2e-09  Score=74.91  Aligned_cols=42  Identities=19%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|.|.+|++.|.....|..|+++ .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            588889999999999999999999999999888 788888884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.68  E-value=7.4e-09  Score=73.15  Aligned_cols=40  Identities=15%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      |+++|.++++|+|.+|++.|.....|.+|+++ +++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            77889999999999999999999999999998 78899987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=8.9e-09  Score=74.51  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=39.4

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            345677999999999999999999999999998             8999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6.6e-09  Score=75.30  Aligned_cols=42  Identities=31%  Similarity=0.508  Sum_probs=34.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            367788888888888888888888888888888 778888875

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.8e-09  Score=75.31  Aligned_cols=42  Identities=29%  Similarity=0.544  Sum_probs=38.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 788999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.1e-09  Score=74.45  Aligned_cols=42  Identities=21%  Similarity=0.488  Sum_probs=34.5

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367788888888888888888888888888888 778888885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.3e-09  Score=75.62  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999998 789999986

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.4e-08  Score=73.44  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=38.0

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            44556899999999999999999999999998             8999999875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=1.5e-08  Score=74.17  Aligned_cols=42  Identities=29%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      ..+..+++|.|++|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            34566899999999999999999999999998             8999999999

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.3e-08  Score=72.87  Aligned_cols=42  Identities=17%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|.++++|.|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            377889999999999999999999999999998 788999884

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=8.6e-09  Score=74.50  Aligned_cols=40  Identities=30%  Similarity=0.523  Sum_probs=25.2

Q ss_pred             hhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          175 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       175 ~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      +++|+++++|+|++|++.|.....|.+|+++ +++++|.|.
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence            4456666666666666666666666666666 556666665

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4.8e-09  Score=75.09  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688899999999999999999999999999998 788999883

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.64  E-value=1.3e-09  Score=84.93  Aligned_cols=55  Identities=15%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             HHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHH
Q 008017          123 LQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK  200 (581)
Q Consensus       123 L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~  200 (581)
                      |..|+++|.             ++++|.|++|       ++.|.....|.   ++|+++++|+|.+|++.|.....+.
T Consensus         2 L~~h~~~H~-------------~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDST-------------NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCC-------------SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcC-------------CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            446777777             8999999999       99999988886   8999999999999999998877654

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=74.02  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             hhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          175 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       175 ~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      +++|.++++|.|.+|++.|.....|.+|+++ +++++|.|. |
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566667777777777777777777777766 666777776 5

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=1.6e-08  Score=72.79  Aligned_cols=42  Identities=19%  Similarity=0.442  Sum_probs=39.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      ..|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            35677999999999999999999999999998             8999999999

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=5.9e-09  Score=84.65  Aligned_cols=64  Identities=23%  Similarity=0.465  Sum_probs=57.6

Q ss_pred             chhhhhhhhcccCCccccccccCCccCChhHHHHHHhhhCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          168 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       168 ~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +..|..|+++|.++++|.|..|++.| ....|..|+...++++|.|. |++.|. +..|..|+++|.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             chHHHhhCcccCCCcccCCcccChHh-hHHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            45789999999999999999999999 49999999933999999999 999988 489999999876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.63  E-value=3.6e-09  Score=88.83  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=49.9

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcc
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      ...|.++++|.|++|++.|.....|.+|+++|.             ++++|.|..|       .+    ...|..|.+.|
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~-------~~----~~~~~~~~~~~   72 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQ-------ER----RKQLLSKQKYA   72 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCC-------SC----CCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchh-------hh----HHHHHhhhccc
Confidence            345677899999999999999999999999998             8999999887       33    56788888888


Q ss_pred             cC
Q 008017          179 HG  180 (581)
Q Consensus       179 ~g  180 (581)
                      .+
T Consensus        73 ~~   74 (88)
T 1x6f_A           73 DG   74 (88)
T ss_dssp             CC
T ss_pred             cc
Confidence            86

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.3e-08  Score=73.02  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=37.3

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588899999999999999999999999999999 78899887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1e-08  Score=74.19  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hC-CCceeec
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG-TREYKCD  214 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~g-ekpy~C~  214 (581)
                      .|+++|.++++|.|.+|++.|.....|.+|+++ ++ +++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            477888888888888888888888888888888 67 7888874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=1.5e-08  Score=72.89  Aligned_cols=40  Identities=20%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CC
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CG  216 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cg  216 (581)
                      .|+++++|+|++|++.|.....|.+|+++ +++++|.|. ||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45566666666666666666666666666 566666666 64

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.7e-08  Score=71.94  Aligned_cols=42  Identities=19%  Similarity=0.347  Sum_probs=37.6

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            345666899999999999999999999999998             899999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=3.3e-08  Score=71.46  Aligned_cols=41  Identities=29%  Similarity=0.498  Sum_probs=37.0

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3e-08  Score=71.66  Aligned_cols=41  Identities=27%  Similarity=0.417  Sum_probs=36.9

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            34555899999999999999999999999998             899999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.7e-08  Score=71.87  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             cccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=1.2e-08  Score=74.71  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCC
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK  191 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk  191 (581)
                      .+++|.|.+|       ++.|.....|.+|+++|+++++|+|.+|+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            6778888887       788888888888888888888888888875

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.6e-08  Score=71.23  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=36.9

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.3e-08  Score=71.27  Aligned_cols=41  Identities=29%  Similarity=0.441  Sum_probs=37.0

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999975

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=4e-08  Score=71.01  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=37.5

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            345666899999999999999999999999998             899999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.6e-08  Score=71.06  Aligned_cols=41  Identities=27%  Similarity=0.432  Sum_probs=36.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            34556899999999999999999999999998             899999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.2e-08  Score=73.62  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            9 GGKPYQCNEC-------GKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSSSCCSS-------CCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3e-08  Score=71.45  Aligned_cols=41  Identities=22%  Similarity=0.390  Sum_probs=36.9

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.1e-08  Score=73.84  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNEC-------GKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.9e-08  Score=70.97  Aligned_cols=41  Identities=24%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.58  E-value=3.2e-08  Score=71.52  Aligned_cols=41  Identities=27%  Similarity=0.350  Sum_probs=36.9

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            5 SSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            34555899999999999999999999999998             899999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.3e-08  Score=73.48  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDC-------GKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SCCSSCCSSS-------CCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.4e-08  Score=73.50  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            9 GEKPFQCEEC-------GKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSBCCSSS-------CCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCcCCCCCCC-------CcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=3.8e-08  Score=70.21  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            35677899999999999999999999999998             899999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.3e-08  Score=73.59  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSS-------CCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCeECCCC-------CcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3e-08  Score=71.75  Aligned_cols=41  Identities=27%  Similarity=0.507  Sum_probs=31.7

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD  214 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~  214 (581)
                      ++++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            35667778888888888888888888888877 677888775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.6e-08  Score=73.00  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            9 GENPFICSEC-------GKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.8e-08  Score=70.99  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=36.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            34555899999999999999999999999998             899999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4.4e-08  Score=70.60  Aligned_cols=41  Identities=27%  Similarity=0.383  Sum_probs=36.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            34555899999999999999999999999998             899999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.5e-08  Score=73.23  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            9 GEKPYKCNEC-------GKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCTTT-------TCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CCCCeECCcC-------ChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=4.7e-08  Score=70.60  Aligned_cols=42  Identities=29%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccc-cccccCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVER-KKVYVCPE  153 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~-~kpy~C~~  153 (581)
                      .+.|.++++|.|++|++.|.....|.+|+++|.             + +++|.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            344556899999999999999999999999998             8 89999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=5.2e-08  Score=70.77  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=39.3

Q ss_pred             cccccCCCccccC--CCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCC
Q 008017           99 PKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        99 ~k~~~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      .+.|.++++|.|.  +|++.|.....|.+|+++|.             ++++|+|.+|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4567779999998  89999999999999999998             8999999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.8e-08  Score=71.09  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  186 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C  186 (581)
                      ++++|.|++|       ++.|..+..|.+|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.8e-08  Score=71.89  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNEC-------GKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSCCTTT-------CCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            8999999999       99999999999999999999999995

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.54  E-value=1.7e-08  Score=71.28  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            7 GENPYECSEC-------GKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCccCCCc-------ChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            8999999999       99999999999999999999999995

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=5.6e-08  Score=70.28  Aligned_cols=42  Identities=26%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      .+.|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            345677899999999999999999999999998             899999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.1e-08  Score=70.75  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=34.7

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|.
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAEC-------KETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999       99999999999999999999999984

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.7e-08  Score=72.93  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|..|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNEC-------KKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTT-------CCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.6e-08  Score=70.28  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      ...|.++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            345677999999999999999999999999998             899999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.9e-08  Score=69.62  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  152 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~  152 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|+|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            44556899999999999999999999999998             88999985

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.53  E-value=9e-09  Score=77.41  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccc
Q 008017          114 NKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  185 (581)
Q Consensus       114 gk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~  185 (581)
                      +|.|.....|..|+++|.             ++++|.|.+|       ++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            477889999999999998             8999999999       999999999999999999999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=1.7e-08  Score=72.83  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|++
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEEC-------GKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCC-------CCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=5.7e-08  Score=69.98  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            44556899999999999999999999999998             899999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=3.9e-08  Score=71.46  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             hhhcccCCcccccc--ccCCccCChhHHHHHHhh-hCCCceeec-C
Q 008017          174 HFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYKCD-C  215 (581)
Q Consensus       174 H~~~H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gekpy~C~-C  215 (581)
                      |.++|+++++|+|.  .|++.|.....|.+|+++ +++++|.|. |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44556666666665  566666666666666666 566666665 5

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.50  E-value=7.1e-08  Score=67.94  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  151 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C  151 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            45566899999999999999999999999998             8899988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=2e-08  Score=71.63  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNEC-------QKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTT-------CCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            8999999999       99999999999999999999999995

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.7e-08  Score=68.76  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  152 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~  152 (581)
                      +.|.++++|.|++|++.|.....|.+|+++|.             ++++|+|+
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            45566899999999999999999999999998             89999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=1.8e-08  Score=72.85  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=35.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            9 GEKPYKCSDC-------GKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCEECccc-------CCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            8999999999       99999999999999999999999997

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.8e-08  Score=67.53  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=35.7

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  151 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C  151 (581)
                      ..|.++++|.|++|++.|.....|.+|+++|.             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            35667899999999999999999999999998             8899988

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=1.7e-08  Score=72.94  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            9 GERPFKCNEC-------GKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCCCSSS-------CCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999973

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=3.2e-08  Score=69.94  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  186 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C  186 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            8 GEKPYPCEIC-------GTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSCCBCCSSS-------CCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCEECCCC-------CCccCCHHHHHHHHHhcCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=1.5e-08  Score=73.31  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=35.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|+.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            9 GEKPYSCNVC-------GKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCSEEETTT-------TEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCeECccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=3.7e-08  Score=70.79  Aligned_cols=40  Identities=23%  Similarity=0.520  Sum_probs=27.9

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      +.++|+++++|+|.+|++.|.....|.+|+++ +++++|.|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            34566677777777777777777777777776 66677766

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=2.8e-08  Score=71.05  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKC-------QATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSSEECTTT-------CCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            8999999999       99999999999999999999999995

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=2.4e-08  Score=71.42  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=34.7

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKC-------DRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSS-------SCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            8999999999       99999999999999999999999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=8e-08  Score=68.46  Aligned_cols=38  Identities=16%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             hcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      ++|+++++|+|.+|++.|.....|.+|+++ +++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            345666666666666666666666666666 56666666

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=5.7e-08  Score=68.25  Aligned_cols=38  Identities=21%  Similarity=0.563  Sum_probs=25.8

Q ss_pred             hcccCCccccccccCCccCChhHHHHHHhh-hCCCceee
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKC  213 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C  213 (581)
                      ++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            356666777777777777777777777666 56666665

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.44  E-value=3.1e-08  Score=69.92  Aligned_cols=35  Identities=14%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  186 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C  186 (581)
                      ++++|.|.+|       ++.|..+..|.+|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.43  E-value=2.5e-08  Score=72.04  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|.+|+++|+++++|+|.
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKEC-------GMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSS-------CCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCccc-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999       99999999999999999999999996

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=3.4e-08  Score=70.55  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|.+|+++|+++++|+|.
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            9 DSKSYNCNEC-------GKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCEEETTT-------TEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCeECccc-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            8999999999       99999999999999999999999984

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=3.9e-08  Score=79.76  Aligned_cols=58  Identities=16%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +..+++|.|..|++.|. ...|..|+ .|.             ++++|.|+.|       ++.|. +..|..|+++|.++
T Consensus        12 ~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------~~~~~~C~~C-------~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------GARTELCGNC-------GRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------HHCEEECSSS-------CCEEE-TTGGGTHHHHBTTB
T ss_pred             cCCCcccCCcccChHhh-HHHHHHHH-hHc-------------CCCceEcccC-------CCcCc-HHHHHHHHHHccCC
Confidence            34467788888888884 77788887 666             7788888877       77666 47778888777765


Q ss_pred             c
Q 008017          182 K  182 (581)
Q Consensus       182 k  182 (581)
                      +
T Consensus        69 ~   69 (75)
T 2d9k_A           69 G   69 (75)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=8.6e-08  Score=68.59  Aligned_cols=36  Identities=19%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCcccccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  187 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~  187 (581)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|.|.
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            9 GEKPYECNEC-------GKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcCeECCCC-------CcccCchHHHHHHHhHhcCCCCCCCC
Confidence            8999999999       99999999999999999999999883

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.31  E-value=3.2e-07  Score=63.68  Aligned_cols=37  Identities=22%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             cCCCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCC
Q 008017          103 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCP  152 (581)
Q Consensus       103 ~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~  152 (581)
                      .++++|.|++|++.|.....|..|+++|.             ++++|.|.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~~   38 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLRL   38 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTTC
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCccceec
Confidence            45889999999999999999999999998             88888763

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=1.6e-07  Score=78.63  Aligned_cols=58  Identities=12%  Similarity=0.337  Sum_probs=47.5

Q ss_pred             hhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          172 KKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       172 ~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      ..|.++|+++++|+|.+|++.|.....|..|+++ +++++|.|. |.+    +..|..|.+.|.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccc
Confidence            3445679999999999999999999999999999 789999998 754    445666666665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.23  E-value=6.6e-07  Score=61.01  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |+++|+++++|+|++|++.|.....|.+|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            78888999999999999999999999999887

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=1.1e-06  Score=69.99  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=38.2

Q ss_pred             CcccccCCCccccCC--CCCccCChHHHHHHH-hhcCCCcccccccccccccccccCCCC
Q 008017           98 SPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKVERKKVYVCPEP  154 (581)
Q Consensus        98 ~~k~~~~~k~f~C~~--Cgk~F~~~s~L~~H~-r~H~~p~~~~~~~~~~~~~kpy~C~~C  154 (581)
                      +.....++|||+|.+  |+|.|....+|++|+ ++|+             ++|||.|.+-
T Consensus        18 ~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~~   64 (73)
T 1x3c_A           18 FPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAEV   64 (73)
T ss_dssp             CSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCSC
T ss_pred             ccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCcccccc
Confidence            445667899999976  999999999999997 6898             8999999764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.20  E-value=4.6e-07  Score=62.81  Aligned_cols=33  Identities=12%  Similarity=0.386  Sum_probs=15.4

Q ss_pred             cCCccccccccCCccCChhHHHHHHhh-hCCCce
Q 008017          179 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       179 ~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                      +++++|+|.+|++.|.....|..|+++ +++++|
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            344444444444444444444444444 344444

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=6.7e-07  Score=60.98  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             hcccCCccccccccCCccCChhHHHHHHhh-hCCCc
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  210 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekp  210 (581)
                      ++|+++++|.|.+|++.|.....|.+|+++ ++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            567888888888888888888888888888 66553

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.11  E-value=1.5e-06  Score=69.18  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             ccCCccccccc--cCCccCChhHHHHHH-hh-hCCCceee
Q 008017          178 KHGEKKWKCEK--CSKKYAVQSDWKAHS-KI-CGTREYKC  213 (581)
Q Consensus       178 H~gekp~~C~~--Cgk~F~~~s~L~~H~-~~-~gekpy~C  213 (581)
                      .+++|||+|.+  |+|+|.+.+.|.+|+ ++ +++|||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            45677777754  777777777777776 45 56777777

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.09  E-value=1.7e-06  Score=57.76  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVC  151 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C  151 (581)
                      ++|.|++|++.|.....|..|+++|.             ++++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE-------------LLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT-------------TTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            57999999999999999999999998             7887753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.07  E-value=2.2e-06  Score=57.49  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=28.1

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |.++++|.|++|++.|.....|.+|+++|.
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            556899999999999999999999999997

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.07  E-value=1.9e-06  Score=57.70  Aligned_cols=32  Identities=22%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             ccCCccccccccCCccCChhHHHHHHhh-hCCC
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  209 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gek  209 (581)
                      |+++++|+|.+|++.|.....|.+|+++ ++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            5666777777777777777777777776 5554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.07  E-value=2.3e-06  Score=57.31  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |.++++|.|++|++.|.....|.+|+++|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            456899999999999999999999999997

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=2e-06  Score=58.54  Aligned_cols=31  Identities=23%  Similarity=0.540  Sum_probs=28.8

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.++++|.|++|++.|.....|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            4567899999999999999999999999997

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.04  E-value=2.4e-06  Score=57.34  Aligned_cols=32  Identities=19%  Similarity=0.513  Sum_probs=21.0

Q ss_pred             ccCCccccccccCCccCChhHHHHHHhh-hCCC
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  209 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gek  209 (581)
                      |+++++|+|.+|++.|.....|.+|+++ ++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            5566667777777777777777777666 4444

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=5.7e-06  Score=55.88  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.++++|.|.+|++.|.....|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            4567899999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=7.2e-06  Score=55.37  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=28.8

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.++++|+|.+|++.|.....|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            4667899999999999999999999999997

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=4.3e-06  Score=57.23  Aligned_cols=31  Identities=16%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             hcccCCccccccccCCccCChhHHHHH-Hhhh
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAH-SKIC  206 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H-~~~~  206 (581)
                      ++|++++||+|+.|++.|.....|.+| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            467778888888888888888888888 6653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=6.7e-06  Score=55.38  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=28.7

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|.++++|.|.+|++.|.....|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            4667899999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=6.2e-06  Score=56.06  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=23.7

Q ss_pred             hcccCCccccccccCCccCCh-hHHHHHHhh-hCC
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQ-SDWKAHSKI-CGT  208 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~-s~L~~H~~~-~ge  208 (581)
                      ++|.++++|+|.+|++.|... ..|.+|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            356777777777777777777 777777776 444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=8.8e-06  Score=54.77  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=28.5

Q ss_pred             cccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .+.++++|.|++|++.|.....|.+|+++|.
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            3566899999999999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.85  E-value=4.6e-06  Score=56.64  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            8 GIKPFQCPDC-------DRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSSBCCTTT-------CCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCccCCCC-------CcccCcHHHHHHHHHHhccC
Confidence            8999999999       99999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.85  E-value=5.4e-06  Score=55.29  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=14.1

Q ss_pred             cccccccCCccCChhHHHHHHhh-hCCCce
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                      ||.|++|++.|.....|..|+++ +++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            44455555555555555555444 444444

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=6.8e-06  Score=55.86  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=28.5

Q ss_pred             cccCCCccccCCCCCccCCh-HHHHHHHhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRD-QNLQLHRRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~-s~L~~H~r~H~  131 (581)
                      .|.++++|.|++|++.|... ..|.+|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            46678999999999999999 99999999986

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=8.4e-06  Score=57.08  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=27.8

Q ss_pred             ccCCCccccCC--CCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +.+++||+|++  |+|.|.....|++|+++|+
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            46689999986  9999999999999999997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.84  E-value=7.3e-06  Score=56.07  Aligned_cols=34  Identities=15%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             ccCCcccccc--ccCCccCChhHHHHHHhh-hCCCce
Q 008017          178 KHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       178 H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                      |+++++|+|.  .|++.|.....|.+|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4556666666  366666666666666666 555554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.83  E-value=4.4e-06  Score=57.87  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             ccCCccccccccCCccCChhHHHHHH
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHS  203 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~  203 (581)
                      +.+||||+|.+|+|.|...+.|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            34566677777777777777776666

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.83  E-value=6.4e-06  Score=56.35  Aligned_cols=30  Identities=27%  Similarity=0.712  Sum_probs=27.2

Q ss_pred             ccCCCccccC--CCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCE--ICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~--~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |.++++|.|+  .|++.|.....|.+|+++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            3468899999  59999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=8.6e-06  Score=54.97  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.++++|+|.+|++.|.....|.+|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            45666777777777777777777777666

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=9.4e-06  Score=54.62  Aligned_cols=29  Identities=24%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.++++|+|.+|++.|.....|.+|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            46667777777777777777777777766

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=8.1e-06  Score=55.12  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=19.2

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.++++|+|.+|++.|.....|.+|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            45566666666666666666666666666

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=1e-05  Score=54.65  Aligned_cols=30  Identities=40%  Similarity=0.576  Sum_probs=27.9

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +..+++|.|++|++.|.....|.+|+++|.
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            456899999999999999999999999997

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=1.3e-05  Score=53.84  Aligned_cols=29  Identities=24%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.++++|.|.+|++.|.....|.+|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            35666777777777777777777777766

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.80  E-value=1e-05  Score=50.84  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.9

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999884

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.77  E-value=8.8e-06  Score=51.38  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=24.9

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|++|++.|.....|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999884

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.77  E-value=1.2e-05  Score=54.85  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             cccCCCccccCCCCCccCChHHHHHH-HhhcC
Q 008017          101 SLMATNRFLCEICNKGFQRDQNLQLH-RRGHN  131 (581)
Q Consensus       101 ~~~~~k~f~C~~Cgk~F~~~s~L~~H-~r~H~  131 (581)
                      .|.++++|.|++|++.|.....|.+| +++|.
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            46678999999999999999999999 89886

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.77  E-value=9e-06  Score=58.92  Aligned_cols=40  Identities=18%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             hhhhhhhcccCCcccccc--ccCCccCChhHHHHHHhh-hCCC
Q 008017          170 GIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTR  209 (581)
Q Consensus       170 ~L~~H~~~H~gekp~~C~--~Cgk~F~~~s~L~~H~~~-~gek  209 (581)
                      .+..|...|+++++|+|+  .|++.|...+.|.+|+++ +++|
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            345566779999999996  699999999999999988 5543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.76  E-value=2e-06  Score=56.99  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=24.8

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|.+|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            57999999999999999999999998

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=1.3e-05  Score=56.12  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=17.1

Q ss_pred             ccCCccccccc--cCCccCChhHHHHHHhh
Q 008017          178 KHGEKKWKCEK--CSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       178 H~gekp~~C~~--Cgk~F~~~s~L~~H~~~  205 (581)
                      ++++|||+|++  |+|.|..++.|++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            45566666654  66666666666666665

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.75  E-value=9.1e-06  Score=56.27  Aligned_cols=26  Identities=31%  Similarity=0.719  Sum_probs=24.4

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHH
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHR  127 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~  127 (581)
                      +.++|+|+|++|+|.|.+.++|++|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            46799999999999999999999997

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.74  E-value=1.4e-05  Score=58.27  Aligned_cols=30  Identities=23%  Similarity=0.531  Sum_probs=28.0

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHh-hcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRR-GHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r-~H~  131 (581)
                      |.++++|.|.+|+|.|.....|.+|++ +|.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            566899999999999999999999999 897

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.73  E-value=1.1e-05  Score=58.79  Aligned_cols=27  Identities=22%  Similarity=0.588  Sum_probs=17.3

Q ss_pred             ccCCccccccccCCccCChhHHHHHHh
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSK  204 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~  204 (581)
                      |+++|+|+|.+|+|.|.....|.+|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            556666666666666666666666666

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.71  E-value=2.8e-05  Score=61.37  Aligned_cols=28  Identities=14%  Similarity=0.289  Sum_probs=15.1

Q ss_pred             ccCCccccccccCCccCChhHHHHHHhh
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |.++|||+|.+|+|.|.....|++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh
Confidence            3445555555555555555555555555

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.71  E-value=2.1e-05  Score=62.10  Aligned_cols=30  Identities=27%  Similarity=0.538  Sum_probs=28.4

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +.++|+|+|.+|+|.|.....|.+|+++|+
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            566899999999999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=2e-05  Score=53.11  Aligned_cols=28  Identities=29%  Similarity=0.600  Sum_probs=17.8

Q ss_pred             ccCCccccccccCCccCChhHHHHHHhh
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |.++++|+|++|++.|.....|..|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            4556666666666666666666666665

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.69  E-value=1.9e-05  Score=49.87  Aligned_cols=27  Identities=26%  Similarity=0.659  Sum_probs=25.1

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=2.1e-05  Score=50.08  Aligned_cols=27  Identities=19%  Similarity=0.549  Sum_probs=25.4

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|.+|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            478999999999999999999999997

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.68  E-value=7.8e-06  Score=54.02  Aligned_cols=31  Identities=13%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      ++|.|.+|       ++.|.....|.+|+++|+++++|
T Consensus         1 kp~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            57889988       89999999999999999998886

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.63  E-value=2.4e-05  Score=49.62  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=24.7

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.61  E-value=3.1e-05  Score=48.99  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=24.6

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47999999999999999999999997

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.57  E-value=2.8e-05  Score=52.98  Aligned_cols=30  Identities=27%  Similarity=0.557  Sum_probs=27.4

Q ss_pred             ccCCCccccCC--CCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +.++++|.|.+  |++.|.....|.+|+++|.
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            56689999995  9999999999999999996

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.57  E-value=3.7e-05  Score=48.85  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=24.6

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.70  E-value=1.1e-05  Score=50.20  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=24.0

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999873

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.52  E-value=6.2e-05  Score=49.09  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=25.3

Q ss_pred             CCccccC--CCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCE--ICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~--~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|+  .|++.|.....|.+|+++|.
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4789999  89999999999999999997

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.52  E-value=4.8e-05  Score=51.78  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             ccCCccccccc--cCCccCChhHHHHHHhh-hCC
Q 008017          178 KHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       178 H~gekp~~C~~--Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                      |+++++|.|.+  |++.|...+.|.+|+++ +++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            55667777763  77777777777777666 443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.50  E-value=3.6e-05  Score=48.50  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999986

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.49  E-value=3.5e-05  Score=48.70  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|.+|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            47999999999999999999999986

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.61  E-value=1.6e-05  Score=50.78  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=25.2

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +++|.|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            368999999999999999999999987

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.47  E-value=7.1e-05  Score=48.49  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.5

Q ss_pred             CccccC--CCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCE--ICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~--~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|+  .|++.|.....|..|+++|.
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            579998  99999999999999999997

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.46  E-value=7.1e-05  Score=46.57  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=23.2

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +|.|++|++.|.....|.+|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999986

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.59  E-value=1.7e-05  Score=50.49  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=24.5

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            47999999999999999999999997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.42  E-value=6.9e-05  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=11.1

Q ss_pred             ccccccccCCccCChhHHHHHHh
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSK  204 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~  204 (581)
                      ++|.|..|++.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            34444444444444444444444

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.41  E-value=5.8e-05  Score=47.45  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=12.6

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      ++|.|. |++.|.....|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            455555 555555555555555443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.38  E-value=9.3e-05  Score=47.18  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=24.1

Q ss_pred             CccccCCCCCccCChHHHHHH-HhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLH-RRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H-~r~H~  131 (581)
                      ++|.|++|++.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            479999999999999999999 78886

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.37  E-value=0.00011  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=11.0

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            34444444444444444444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.35  E-value=0.00013  Score=46.03  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=10.8

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            34444444444444444444444

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.29  E-value=0.00012  Score=46.00  Aligned_cols=24  Identities=42%  Similarity=0.796  Sum_probs=12.8

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      ++|.|. |++.|.....|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            455555 555555555555555544

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.27  E-value=8.9e-05  Score=47.02  Aligned_cols=24  Identities=17%  Similarity=0.544  Sum_probs=12.2

Q ss_pred             ccccccccCCccCChhHHHHHHhh
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++|.|.+|++.|.....|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            445555555555555555555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.26  E-value=9.4e-05  Score=46.76  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=14.7

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPEC-------PKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSS-------SCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCC-------CchhCCHHHHHHHHHHhcCC
Confidence            4555555       55555555555555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.23  E-value=3.3e-05  Score=55.85  Aligned_cols=31  Identities=13%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             ccccccCC--CCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          145 RKKVYVCP--EPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       145 ~~kpy~C~--~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      ++++|.|.  .|       ++.|..+..|.+|+++|+++|
T Consensus        15 ~~k~~~C~~~~C-------~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           15 PDKTFECLFPGC-------TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-------CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            89999996  68       999999999999999999875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.20  E-value=0.00018  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.649  Sum_probs=11.5

Q ss_pred             cccccc--ccCCccCChhHHHHHHhh
Q 008017          182 KKWKCE--KCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~--~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++|.|.  .|++.|.....|.+|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            344444  444444444444444444

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=0.00014  Score=45.70  Aligned_cols=23  Identities=43%  Similarity=0.783  Sum_probs=12.3

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            45555555555555555555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.15  E-value=0.00017  Score=46.54  Aligned_cols=20  Identities=15%  Similarity=0.335  Sum_probs=10.6

Q ss_pred             CCcccCchhhhhhhhcccCC
Q 008017          162 SRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       162 ~k~F~~~s~L~~H~~~H~ge  181 (581)
                      ++.|.....|..|+++|+++
T Consensus        11 ~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A           11 GKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCSSHHHHHHHHTTTSCC
T ss_pred             CcccCCHhHHHHHHHHhcCC
Confidence            55555555555555555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.21  E-value=6.7e-05  Score=46.47  Aligned_cols=23  Identities=26%  Similarity=0.692  Sum_probs=11.6

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ||.|++|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555555555555555555443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.20  E-value=6.8e-05  Score=47.60  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=16.0

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMC-------GKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4556655       56666666666666665554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.11  E-value=0.00019  Score=45.17  Aligned_cols=26  Identities=23%  Similarity=0.668  Sum_probs=24.3

Q ss_pred             CccccC--CCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCE--ICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~--~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++|.|+  .|++.|.....|.+|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.18  E-value=7.4e-05  Score=47.58  Aligned_cols=28  Identities=32%  Similarity=0.581  Sum_probs=15.5

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      ++|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHC-------QRQFADPGALQRHVRIHTGE   29 (30)
Confidence            45555555       55555555555555555543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.09  E-value=0.00013  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.762  Sum_probs=12.4

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +|.|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            45555555555555555555554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.95  E-value=0.00035  Score=44.36  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=10.2

Q ss_pred             CCcccCchhhhhh-hhcccCC
Q 008017          162 SRALGDLTGIKKH-FSRKHGE  181 (581)
Q Consensus       162 ~k~F~~~s~L~~H-~~~H~ge  181 (581)
                      ++.|.....|..| +++|+++
T Consensus         9 ~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            9 NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcccCChHHHHHHHHHHccCC
Confidence            5555555555555 4455443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.92  E-value=0.00035  Score=43.27  Aligned_cols=22  Identities=23%  Similarity=0.726  Sum_probs=11.8

Q ss_pred             ccccccCCccCChhHHHHHHhh
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |+|.+|++.|.....|.+|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4555555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0013  Score=51.35  Aligned_cols=44  Identities=11%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             CCcccCchhhhhhh-hcccCCc------ccccc--ccCCccCChhHHHHHHhh
Q 008017          162 SRALGDLTGIKKHF-SRKHGEK------KWKCE--KCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       162 ~k~F~~~s~L~~H~-~~H~gek------p~~C~--~Cgk~F~~~s~L~~H~~~  205 (581)
                      ++.|.....|..|+ +.|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus        10 ~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           10 PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            55555555555555 2444333      34443  344444444444444443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0027  Score=49.48  Aligned_cols=50  Identities=20%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             ccccc--cCCccCChhHHHHHHhh-h-CCC------ceeec---CCCccCChhHHHHHHhhhh
Q 008017          184 WKCEK--CSKKYAVQSDWKAHSKI-C-GTR------EYKCD---CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       184 ~~C~~--Cgk~F~~~s~L~~H~~~-~-gek------py~C~---Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +.|..  |++.|.+...|..|+.. | +.+      +|.|.   |++.+.....|.+|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            45654  99999999999999864 4 333      79995   9999999999999998754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.37  E-value=0.0015  Score=58.27  Aligned_cols=84  Identities=12%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             CCccccCCCCCccCChHHHHHHH--hhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHR--RGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~--r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      .+++.|.+|...|.+...+..|.  +.|..            ..+.|.+. ++......++.|..    ..+...+.+.+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~------------~v~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~   92 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHAN------------KVRRYMAI-NQGEDSVPAKKFKA----APAEISDGEDR   92 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHH------------HHHHHHHH-TTCCCCCSCCCCSC----CSSCCSSCCCT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHH------------HHHHHhcc-cCcccCCCCCccCC----CccccccCCCC
Confidence            35789999999999999999998  56641            11333331 11100001222221    12334455667


Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.|.+|++.|.....|..|+..
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTS
T ss_pred             CeEcCCCCCEeCCHHHHHHHHCC
Confidence            78888888888888888888754

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.29  E-value=0.002  Score=40.26  Aligned_cols=25  Identities=8%  Similarity=-0.221  Sum_probs=23.5

Q ss_pred             CccCC--cccccccChhHHHHHHhhcc
Q 008017           64 GINFS--LFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        64 ~~~C~--~C~k~F~~~~~L~~H~~~h~   88 (581)
                      .|.|.  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            58999  99999999999999999986

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.20  E-value=0.0096  Score=52.89  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             CccCCcccccccChhHHHHHH--hhccCCChhhhhcC----------------cccccCCCccccCCCCCccCChHHHHH
Q 008017           64 GINFSLFNFIFFQFWGLIDFV--LFESDPDAEVIALS----------------PKSLMATNRFLCEICNKGFQRDQNLQL  125 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~--~~h~~~~~~~~~~~----------------~k~~~~~k~f~C~~Cgk~F~~~s~L~~  125 (581)
                      .+.|.+|+..|.+...+..|.  +.|...........                .......+.|.|.+|++.|.+...|..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~  111 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAES  111 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHH
Confidence            489999999999999999999  55542211000000                012344678999999999999999999


Q ss_pred             HHhh
Q 008017          126 HRRG  129 (581)
Q Consensus       126 H~r~  129 (581)
                      |...
T Consensus       112 H~~g  115 (127)
T 1zu1_A          112 HYIG  115 (127)
T ss_dssp             HHTS
T ss_pred             HHCC
Confidence            9853

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.03  E-value=0.062  Score=49.67  Aligned_cols=79  Identities=19%  Similarity=0.453  Sum_probs=57.5

Q ss_pred             cccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChh
Q 008017          146 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRD  223 (581)
Q Consensus       146 ~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~  223 (581)
                      +....|+.-||     ...+. ...|..|++ .=..+++.|+.|+..+ .+..|..|+.. ...+...|. |+..|.. .
T Consensus        80 ~l~v~C~n~GC-----~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~  150 (170)
T 3hcs_A           80 SLMVKCPNEGC-----LHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-E  150 (170)
T ss_dssp             TSEEECCSTTC-----CCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-G
T ss_pred             hcccCCCCCCC-----Cceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-H
Confidence            34556754445     65543 556777763 2344678999999988 67779999976 888999999 9998865 5


Q ss_pred             HHHHHHhhhh
Q 008017          224 SFITHRAFCD  233 (581)
Q Consensus       224 ~L~~H~~~h~  233 (581)
                      .|..|...+.
T Consensus       151 ~l~~H~~~~~  160 (170)
T 3hcs_A          151 DKEIHDQNCP  160 (170)
T ss_dssp             GHHHHHTTCC
T ss_pred             HHHhHHHhCc
Confidence            7789987764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.69  E-value=0.0082  Score=52.99  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=25.8

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhh
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      +-..|+|+++|.|..|+|.|.+...|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            34567888888888888888888888888775

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.36  E-value=0.013  Score=51.77  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhc
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      ..++++++|.|..|+|.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            4577899999999999999999999998764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.96  E-value=0.07  Score=38.54  Aligned_cols=24  Identities=17%  Similarity=0.482  Sum_probs=15.6

Q ss_pred             ccccccccCCccCChhHHHHHHhh
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ..|.|+.|++.|...+.|++||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            346666666666666666666664

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.41  E-value=0.2  Score=46.13  Aligned_cols=81  Identities=20%  Similarity=0.319  Sum_probs=54.3

Q ss_pred             cccc--CCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          107 RFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       107 ~f~C--~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      ...|  .-|+..+. ...|..|.+.-              ..++..|+.|       +..+ .+..|..|+...-..+..
T Consensus        82 ~v~C~n~GC~~~~~-~~~l~~H~~~C--------------~~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~  138 (170)
T 3hcs_A           82 MVKCPNEGCLHKME-LRHLEDHQAHC--------------EFALMDCPQC-------QRPF-QKFHINIHILKDCPRRQV  138 (170)
T ss_dssp             EEECCSTTCCCEEE-GGGHHHHHTTC--------------TTSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEE
T ss_pred             ccCCCCCCCCceec-HhHHHHHHhcC--------------CceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCe
Confidence            3445  34555443 34566665432              3467788877       7777 577799999877788889


Q ss_pred             cccccCCccCChhHHHHHHhh-hCCCce
Q 008017          185 KCEKCSKKYAVQSDWKAHSKI-CGTREY  211 (581)
Q Consensus       185 ~C~~Cgk~F~~~s~L~~H~~~-~gekpy  211 (581)
                      .|..|+..|.. ..|..|..+ .|+.++
T Consensus       139 ~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          139 SCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             ECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             ECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            99999998754 667999988 776653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.07  E-value=0.083  Score=38.18  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             CccccCCCCCccCChHHHHHHHhh
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRG  129 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~  129 (581)
                      .+|.|+.|++.|.....|+.||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            679999999999999999999973

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=90.33  E-value=0.026  Score=64.39  Aligned_cols=6  Identities=50%  Similarity=0.661  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 008017          361 ALLQKA  366 (581)
Q Consensus       361 ~~~q~a  366 (581)
                      +|++..
T Consensus       136 ~l~~~~  141 (727)
T 4b8c_D          136 ALMEMA  141 (727)
T ss_dssp             HHHHHH
T ss_pred             hhhhhh
Confidence            444443

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=81.28  E-value=0.91  Score=29.89  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=23.3

Q ss_pred             ccCCcccccccChhHHHHHHhhccCC
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFESDP   90 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~~~   90 (581)
                      -.|..|.+.|....+|..|+|..+++
T Consensus        10 qhcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46999999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	9e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 181 EKKWKCEKCSKKYAVQSDWKAHSKICGT-REYKCD-CGKLFSRRDSFITHR 229
           +K + C+ C K +  +S    H  +    R Y C  CGK F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 181 EKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YKCD 214
            K + C+ C K ++       H K   T E  +KC 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.34
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.31
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.8
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.73
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.69
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.61
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.6
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.58
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.56
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.53
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.53
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.52
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.51
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.46
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.43
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.42
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.4
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.4
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.36
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.33
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.31
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.3
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.22
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.2
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.15
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.07
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.07
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.01
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.99
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.98
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.96
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.95
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.87
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.79
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.73
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.72
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.7
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.66
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.13
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.89
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.85
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.74
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.62
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.59
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.53
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.44
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.36
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.26
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.18
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.16
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.12
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.1
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.04
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.88
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.83
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.68
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.66
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.62
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.62
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.57
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.57
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.54
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.47
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.37
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.95
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.95
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.85
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.43
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.01
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.93
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.87
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.57
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.23
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.9
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.76
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.51
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.44
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.96
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	90.93
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	90.51
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.27
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.89
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.86
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.78
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	86.56
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	82.78
d1y0jb1	36	U-shaped transcription factor, different fingers {	82.72
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.7
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	80.7

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-13  Score=101.42  Aligned_cols=51  Identities=29%  Similarity=0.725  Sum_probs=25.8

Q ss_pred             CccccccccCCccCChhHHHHHHhh-hCCCceeec-CCCccCChhHHHHHHhhh
Q 008017          181 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       181 ekp~~C~~Cgk~F~~~s~L~~H~~~-~gekpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      ||+|+|+ |||.|.....|..|+++ .+++||.|. |++.|.....|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3455552 55555555555555555 455555555 555555555555555443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.7e-13  Score=100.57  Aligned_cols=53  Identities=17%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcc
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRK  178 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H  178 (581)
                      ||+|+|+ |||.|.....|..|+++|.             +++||.|.+|       +++|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            3455553 5555555555555555555             5555555555       55555555555555554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.8e-10  Score=76.36  Aligned_cols=37  Identities=27%  Similarity=0.635  Sum_probs=33.9

Q ss_pred             CCCccccCCCCCccCChHHHHHHHh-hcCCCcccccccccccccccccCCC
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r-~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      .+|||+|++|||.|....+|.+|++ +|.             ++|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            3789999999999999999999986 798             999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.7e-10  Score=75.73  Aligned_cols=36  Identities=22%  Similarity=0.612  Sum_probs=32.8

Q ss_pred             hhhhcccCCccccccccCCccCChhHHHHHHhh-hCC
Q 008017          173 KHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       173 ~H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                      +|+++|+++|||+|++|||.|...+.|.+|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            689999999999999999999999999999998 664

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.3e-09  Score=73.29  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=29.5

Q ss_pred             hhhcccCCccccccccCCccCChhHHHHHHhhh
Q 008017          174 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKIC  206 (581)
Q Consensus       174 H~~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~  206 (581)
                      |.|+|++||||+|.+|+|.|..++.|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            778999999999999999999999999998874

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.9e-09  Score=74.33  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=26.5

Q ss_pred             cccccCCCCCccCCCCCCcccCchhhhhhhh-cccCCccccccc
Q 008017          146 KKVYVCPEPTCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK  188 (581)
Q Consensus       146 ~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~-~H~gekp~~C~~  188 (581)
                      +|||+|.+|       +++|.....|++|++ +|++||||+|++
T Consensus         3 ~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            577777777       777777777777765 577777777763

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.5e-09  Score=71.93  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=27.8

Q ss_pred             hcccCCccccccccCCccCChhHHHHHHhhhCC
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGT  208 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~~ge  208 (581)
                      |+|+|||||+|.+|+|+|...+.|.+|+++|.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            578899999999999999999999999888433

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.2e-09  Score=68.43  Aligned_cols=32  Identities=28%  Similarity=0.599  Sum_probs=23.4

Q ss_pred             cccCCccccccccCCccCChhHHHHHHhh-hCC
Q 008017          177 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       177 ~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                      +|++||||+|.+|||.|...+.|.+|+++ +||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            46777777777777777777777777777 443

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.3e-09  Score=69.96  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             hcccCCccccccccCCccCChhHHHHHHhh-hCC
Q 008017          176 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  208 (581)
Q Consensus       176 ~~H~gekp~~C~~Cgk~F~~~s~L~~H~~~-~ge  208 (581)
                      |+|+|||||+|++|+|.|..+++|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            578999999999999999999999999776 554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-08  Score=67.70  Aligned_cols=30  Identities=30%  Similarity=0.515  Sum_probs=28.7

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |+++|||+|.+|+|.|...++|.+|+|+|+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            677999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.4e-08  Score=68.16  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=28.6

Q ss_pred             ccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          102 LMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       102 ~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++++|||+|++|+|.|....+|++|+++|.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            578999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-08  Score=68.12  Aligned_cols=32  Identities=22%  Similarity=0.549  Sum_probs=29.7

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +.|+++|||+|++|+|.|....+|.+|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            35777999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.8e-08  Score=67.65  Aligned_cols=29  Identities=17%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             ccCCccccccccCCccCChhHHHHHHhhh
Q 008017          178 KHGEKKWKCEKCSKKYAVQSDWKAHSKIC  206 (581)
Q Consensus       178 H~gekp~~C~~Cgk~F~~~s~L~~H~~~~  206 (581)
                      |+|||||+|++|+|.|.++++|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            45666666666666666666666666663

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.2e-09  Score=70.96  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             HHHhhcCCCcccccccccccccccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          125 LHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       125 ~H~r~H~~p~~~~~~~~~~~~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      +|+++|.             ++|||.|.+|       +|+|...+.|.+|+++|+||
T Consensus         2 rH~~~Ht-------------~ekpy~C~~C-------gK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQR-------------ERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCC-------------CSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccC-------------CCCCEecCCC-------CceeeCHHHHHHhCccCCCC
Confidence            4677777             9999999999       99999999999999999987

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=3.1e-08  Score=67.53  Aligned_cols=33  Identities=30%  Similarity=0.689  Sum_probs=29.9

Q ss_pred             cccccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017           99 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus        99 ~k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .+.|+++|||+|++|+|.|.++.+|.+|+++|.
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            355667999999999999999999999999996

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.46  E-value=4.3e-08  Score=62.98  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=25.3

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||.|++|+|.|....+|.+|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.9e-08  Score=61.74  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=24.7

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|++|||.|...+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999983

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=3.1e-08  Score=71.18  Aligned_cols=40  Identities=20%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             hhhhhhhhcccCCccccccc--cCCccCChhHHHHHHhh-hCCC
Q 008017          169 TGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTR  209 (581)
Q Consensus       169 s~L~~H~~~H~gekp~~C~~--Cgk~F~~~s~L~~H~~~-~gek  209 (581)
                      ..|.+|++ |++||||+|.+  |+|.|.+.+.|++|+++ +|+|
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45677775 99999999987  99999999999999999 7765

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=4e-08  Score=62.49  Aligned_cols=27  Identities=37%  Similarity=0.796  Sum_probs=25.9

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ||||+|.+|+|.|....+|.+|+|+|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999996

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6e-08  Score=62.24  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=25.2

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||.|++|+|.|...++|.+|+|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.2e-08  Score=66.87  Aligned_cols=35  Identities=26%  Similarity=0.717  Sum_probs=29.0

Q ss_pred             ccCCCCCccCCCCCCcccCchhhhhhhhcccCCccccccc
Q 008017          149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  188 (581)
Q Consensus       149 y~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~~C~~  188 (581)
                      |.|++.+|     +++|..+..|++|+++|++||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67777544     899999999999999999999999863

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.9e-08  Score=65.02  Aligned_cols=32  Identities=16%  Similarity=0.474  Sum_probs=28.1

Q ss_pred             ccccCCCccccCCCCCccCChHHHHHHHhhcC
Q 008017          100 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       100 k~~~~~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +.|+++|||+|++|+|.|....+|++|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            35778999999999999999999999986544

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.7e-08  Score=64.97  Aligned_cols=33  Identities=30%  Similarity=0.669  Sum_probs=31.0

Q ss_pred             cccCC--CCCccCChHHHHHHHhhcCCCcccccccccccccccccCCC
Q 008017          108 FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPE  153 (581)
Q Consensus       108 f~C~~--Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~C~~  153 (581)
                      |.|++  |+|.|.+..+|++|+++|.             ++|||+|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            78987  9999999999999999998             999999974

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=1.1e-07  Score=60.38  Aligned_cols=24  Identities=17%  Similarity=0.594  Sum_probs=10.3

Q ss_pred             ccccccccCCccCChhHHHHHHhh
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |||+|.+|+|.|.+++.|.+|+++
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCC
Confidence            344444444444444444444443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.30  E-value=1.1e-07  Score=61.01  Aligned_cols=29  Identities=28%  Similarity=0.584  Sum_probs=16.6

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      |||+|++|       +++|...+.|++|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            35555555       555555555555555555553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.3e-07  Score=59.44  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=16.6

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      |||.|.+|       +++|..++.|.+|+++|++||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            35555555       555555555555555555553

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.1e-07  Score=56.97  Aligned_cols=24  Identities=42%  Similarity=0.913  Sum_probs=15.3

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      |||+|. |||+|.+++.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            466666 666666666666666665

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=8.7e-08  Score=68.75  Aligned_cols=33  Identities=18%  Similarity=0.487  Sum_probs=30.0

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      +++||+|.+-+|     +++|..++.|++|+++|+|||
T Consensus        15 gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          15 PDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            999999998333     999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.6e-07  Score=58.19  Aligned_cols=31  Identities=19%  Similarity=0.518  Sum_probs=22.3

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      |||+|++-+|     +++|...++|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5677766544     777777777777777777765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=9.7e-07  Score=56.87  Aligned_cols=26  Identities=35%  Similarity=0.726  Sum_probs=25.0

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|++  |+|.|.+.++|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899999  9999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.3e-07  Score=56.94  Aligned_cols=30  Identities=27%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      |||+|++-||     +|+|..++.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            4666666433     66666666666666666664

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.8e-06  Score=56.07  Aligned_cols=26  Identities=42%  Similarity=0.899  Sum_probs=24.3

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||.|++  |+|.|.+..+|++|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            6899964  9999999999999999998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1e-06  Score=56.86  Aligned_cols=26  Identities=42%  Similarity=0.738  Sum_probs=24.8

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|++  |+|.|.+..+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899988  9999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.3e-07  Score=57.23  Aligned_cols=30  Identities=17%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      |||+|++-+|     +|+|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            4666666444     66666666666666666664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=2.2e-06  Score=55.98  Aligned_cols=27  Identities=30%  Similarity=0.815  Sum_probs=25.8

Q ss_pred             CCccccCC--CCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ||||.|++  |+|.|.+..+|++|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            58999998  9999999999999999997

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.8e-06  Score=54.50  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=24.5

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|++  |+|.|.+..+|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=5.2e-06  Score=50.79  Aligned_cols=27  Identities=30%  Similarity=0.682  Sum_probs=25.5

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ||||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.8e-06  Score=54.20  Aligned_cols=29  Identities=24%  Similarity=0.698  Sum_probs=19.7

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      |||+|++.||     +|+|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            4677776555     7777777777777777664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=6.9e-06  Score=53.55  Aligned_cols=28  Identities=21%  Similarity=0.542  Sum_probs=14.7

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      |||.|++.||     +++|...++|++|+++|+
T Consensus         2 rP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGC-----DKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTC-----CCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCC-----CCeeCCHHHHHHHhhhcc
Confidence            4555555433     555555555555555554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=5.1e-06  Score=52.95  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=24.6

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|++  |+|.|.+..+|.+|+|+|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899988  9999999999999999996

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=9.6e-06  Score=48.00  Aligned_cols=25  Identities=40%  Similarity=0.800  Sum_probs=23.6

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |++|++|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=1.1e-05  Score=49.37  Aligned_cols=25  Identities=32%  Similarity=0.784  Sum_probs=16.0

Q ss_pred             CCceeec-CCCccCChhHHHHHHhhh
Q 008017          208 TREYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       208 ekpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      ||||.|+ ||+.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            4566666 666666666666666655

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.4e-06  Score=51.65  Aligned_cols=28  Identities=29%  Similarity=0.655  Sum_probs=18.8

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      |||+|++-||     +|+|...++|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            4677776555     777777777777777664

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.1e-05  Score=48.51  Aligned_cols=32  Identities=34%  Similarity=0.629  Sum_probs=28.9

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcCCCccccccccccccccccc
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYV  150 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~~p~~~~~~~~~~~~~kpy~  150 (581)
                      |...|+.|||.|.....|.+|...|.             ++|||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs-------------~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC-------------CCCCCC
Confidence            45789999999999999999999998             888873

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=7.8e-05  Score=44.04  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=14.4

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |++|++|+|.|.+++.|+.|+|.
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CCccchhhhHhcchhHHHHHhhc
Confidence            45666666666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00011  Score=46.54  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCCccc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKW  184 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gekp~  184 (581)
                      +...|+.|       +|+|.+...|.+|...|.+||||
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCC
Confidence            34567777       77777777777777777777776

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00015  Score=44.82  Aligned_cols=27  Identities=26%  Similarity=0.752  Sum_probs=25.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +|||.|++|+..|.++.-+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00014  Score=44.94  Aligned_cols=28  Identities=36%  Similarity=0.768  Sum_probs=16.4

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      |||.|.+.||     +|+|.+.+.|++|++.++
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhC
Confidence            4566666555     666666666666665544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00032  Score=42.20  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=23.4

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4689999999999999999999997

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00021  Score=43.47  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.1

Q ss_pred             ccCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       149 y~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      |.|++|       ++.....+.|++|++.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            788888       888888888999999998874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00036  Score=46.59  Aligned_cols=28  Identities=43%  Similarity=0.915  Sum_probs=24.3

Q ss_pred             hCCCceeec-CCCccCChhHHHHHHhhhh
Q 008017          206 CGTREYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       206 ~gekpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +|-|||.|. |+|.|-.++++.+|...|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~   29 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCT   29 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhh
Confidence            367899999 9999999999999987775

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00037  Score=43.06  Aligned_cols=25  Identities=24%  Similarity=0.551  Sum_probs=18.3

Q ss_pred             Cceeec---CCCccCChhHHHHHHhhhh
Q 008017          209 REYKCD---CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       209 kpy~C~---Cgk~F~~~~~L~~H~~~h~  233 (581)
                      |||.|.   |+|+|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            577775   7777777777777777654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00037  Score=43.07  Aligned_cols=24  Identities=33%  Similarity=0.707  Sum_probs=11.8

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      |||.|. |..+|.+++.+..|.+.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCcccchHHHHhhccccceEeeecc
Confidence            444454 555555555444454444

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.62  E-value=0.00063  Score=39.69  Aligned_cols=24  Identities=29%  Similarity=0.778  Sum_probs=22.7

Q ss_pred             cccCCCCCccCChHHHHHHHhhcC
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |+|..|.++|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00076  Score=40.97  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=23.9

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +|.|++|+......+-|++|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999998

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00045  Score=41.53  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=18.2

Q ss_pred             ccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          149 YVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       149 y~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      ++|.+|       +|+|...+.|++|...|++|
T Consensus         3 hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            456666       77777777777777777664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0008  Score=40.31  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=24.7

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||+|..|...-...+.|.+|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            78999999999999999999999995

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00056  Score=41.31  Aligned_cols=27  Identities=15%  Similarity=0.298  Sum_probs=14.2

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHG  180 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~g  180 (581)
                      +||+|..|       .++-...+.|..|++.|+|
T Consensus         2 rpfkcqlc-------sy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQIC-------PYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeeec-------ccccCCchheEEeeecccC
Confidence            45555555       5555555555555555554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.00078  Score=39.90  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             cCCCCCccCCCCCCcccCchhhhhhhhcccCCc
Q 008017          150 VCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEK  182 (581)
Q Consensus       150 ~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~gek  182 (581)
                      +|+.|       .+.|.++..|+.|-+.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            57777       888888888888888888875

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0012  Score=43.93  Aligned_cols=26  Identities=23%  Similarity=0.552  Sum_probs=23.6

Q ss_pred             CCCccccCCCCCccCChHHHHHHHhh
Q 008017          104 ATNRFLCEICNKGFQRDQNLQLHRRG  129 (581)
Q Consensus       104 ~~k~f~C~~Cgk~F~~~s~L~~H~r~  129 (581)
                      +.|||.|.+|+|.|-++.++.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            57899999999999999999999753

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0017  Score=39.19  Aligned_cols=27  Identities=30%  Similarity=0.642  Sum_probs=25.6

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      ++||+|..|...-+..+.|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            579999999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0015  Score=39.08  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=15.8

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h  232 (581)
                      |||+|. |...-...++|.+|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            566666 666666666666666665

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.10  E-value=0.0019  Score=37.66  Aligned_cols=24  Identities=13%  Similarity=0.005  Sum_probs=22.7

Q ss_pred             ccCCcccccccChhHHHHHHhhcc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~   88 (581)
                      |+|..|.+.|..++.|.+|.|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999885

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.04  E-value=0.0017  Score=39.27  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=16.5

Q ss_pred             Cceeec---CCCccCChhHHHHHHhhh
Q 008017          209 REYKCD---CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       209 kpy~C~---Cgk~F~~~~~L~~H~~~h  232 (581)
                      .||+|.   |++.|...+.|+||.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            367774   777777777777777665

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.88  E-value=0.0019  Score=39.03  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=23.0

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhc
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H  130 (581)
                      .||+|..  |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4799977  999999999999999887

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0021  Score=38.99  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=22.1

Q ss_pred             ccccCCCCCccCChHHHHHHHhhc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      ||.|..|...|.++.+|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999999753

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0028  Score=38.53  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=17.2

Q ss_pred             ccccccccCCccCChhHHHHHHhh-hC
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSKI-CG  207 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~~-~g  207 (581)
                      +||+|..|....+..++|..|++. |+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            466677776666666677666666 54

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0037  Score=38.06  Aligned_cols=24  Identities=33%  Similarity=0.600  Sum_probs=17.1

Q ss_pred             ccccccccCCccCChhHHHHHHhh
Q 008017          182 KKWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       182 kp~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |||.|..|..+.+..++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            467777777777777777777776

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.66  E-value=0.0034  Score=41.48  Aligned_cols=27  Identities=26%  Similarity=0.587  Sum_probs=25.2

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .+.|+|.+|+|.|.+-..|=-|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999999996

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0035  Score=37.94  Aligned_cols=28  Identities=11%  Similarity=-0.022  Sum_probs=25.9

Q ss_pred             CCCccCCcccccccChhHHHHHHhhccC
Q 008017           62 NPGINFSLFNFIFFQFWGLIDFVLFESD   89 (581)
Q Consensus        62 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~   89 (581)
                      +..|.|..|...|.++..|+.||-.|++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            4579999999999999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.62  E-value=0.0018  Score=39.33  Aligned_cols=30  Identities=27%  Similarity=0.592  Sum_probs=24.8

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      |||.|.+-||     .|.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788888777     88888888888888888875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.0038  Score=36.91  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=22.1

Q ss_pred             ccCCCCCccCChHHHHHHHhhcC
Q 008017          109 LCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       109 ~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .|+.|.|.|.++..|+.|.|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999998

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0029  Score=38.34  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=10.4

Q ss_pred             ccccccCCccCChhHHHHHHhh
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |.|..|...|+.+.+|..||+.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            4444444444444444444443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0039  Score=40.90  Aligned_cols=28  Identities=21%  Similarity=0.675  Sum_probs=24.3

Q ss_pred             CCCceeec---CCCccCChhHHHHHHhhhhh
Q 008017          207 GTREYKCD---CGKLFSRRDSFITHRAFCDV  234 (581)
Q Consensus       207 gekpy~C~---Cgk~F~~~~~L~~H~~~h~~  234 (581)
                      .+|||.|.   |+.+|.+.+.|..|++.|..
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~m   33 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhee
Confidence            47899995   99999999999999998863

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.47  E-value=0.0031  Score=39.17  Aligned_cols=23  Identities=13%  Similarity=0.450  Sum_probs=11.0

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      ||.|.+|++.|++++-|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            34444455555555444444433

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.003  Score=39.24  Aligned_cols=30  Identities=30%  Similarity=0.581  Sum_probs=23.0

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhh-hcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHF-SRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~-~~H~ge  181 (581)
                      |||.|.+.||     .|+|...+.-.+|. |+|..|
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccCC
Confidence            5788888766     88888888888886 677543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.95  E-value=0.0062  Score=37.80  Aligned_cols=24  Identities=38%  Similarity=0.822  Sum_probs=21.4

Q ss_pred             ceeec-CCCccCChhHHHHHHhhhh
Q 008017          210 EYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       210 py~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      ||.|. |++.|.+++.|.+|..+-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            79999 9999999999999986544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.95  E-value=0.0074  Score=36.48  Aligned_cols=27  Identities=33%  Similarity=0.776  Sum_probs=25.0

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +..|.|..|...|+++-.|+.||..|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            456999999999999999999999997

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.85  E-value=0.0086  Score=39.47  Aligned_cols=30  Identities=10%  Similarity=-0.081  Sum_probs=26.7

Q ss_pred             CCCccCCcccccccChhHHHHHHhhccCCC
Q 008017           62 NPGINFSLFNFIFFQFWGLIDFVLFESDPD   91 (581)
Q Consensus        62 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~~   91 (581)
                      .+.|+|.+|++.|.+-..|=-||+.|..+.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            357999999999999999999999997643

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.012  Score=35.83  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||.|..|.......++|+.|+++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            68999999999999999999998754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.43  E-value=0.0071  Score=36.68  Aligned_cols=26  Identities=35%  Similarity=0.677  Sum_probs=23.7

Q ss_pred             CccccCC--CCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEI--CNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~--Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |||.|.+  |.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5799977  9999999999999998886

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.011  Score=37.93  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=23.5

Q ss_pred             cccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          148 VYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       148 py~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      .|.|.+-+|  ..-++.|..+..|..|+|.|+||
T Consensus         2 ~y~C~W~~C--~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCC--CCCCCcchhHHHHHHHHhhcCCC
Confidence            466766655  22356688899999999999886

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.93  E-value=0.017  Score=34.33  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=13.0

Q ss_pred             cccccccCCccCChhHHHHHHh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSK  204 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~  204 (581)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4556666666666666666543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.87  E-value=0.017  Score=34.37  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             ccccCCCCCccCChHHHHHHHhh
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRG  129 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~  129 (581)
                      ||+|..|||.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            69999999999999999999753

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.021  Score=34.57  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             Cceeec-CCCccCChhHHHHHHhhhh
Q 008017          209 REYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       209 kpy~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      +||+|. |..-..+.++|..|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            689999 9999999999999998765

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.23  E-value=0.023  Score=33.08  Aligned_cols=22  Identities=32%  Similarity=0.696  Sum_probs=16.4

Q ss_pred             ccccccCCccCChhHHHHHHhh
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      |.|+.|-|.|++++++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6677777777777777777766

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.90  E-value=0.024  Score=32.83  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=21.1

Q ss_pred             CccCCcccccccChhHHHHHHhh
Q 008017           64 GINFSLFNFIFFQFWGLIDFVLF   86 (581)
Q Consensus        64 ~~~C~~C~k~F~~~~~L~~H~~~   86 (581)
                      .|+|..|...|..+..|+.||-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999864

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.017  Score=35.74  Aligned_cols=24  Identities=29%  Similarity=0.641  Sum_probs=15.9

Q ss_pred             Cceeec---CCCccCChhHHHHHH-hhh
Q 008017          209 REYKCD---CGKLFSRRDSFITHR-AFC  232 (581)
Q Consensus       209 kpy~C~---Cgk~F~~~~~L~~H~-~~h  232 (581)
                      |||.|.   |.|.|...++-.+|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            567775   777777777766775 444

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.033  Score=35.26  Aligned_cols=24  Identities=38%  Similarity=0.983  Sum_probs=19.3

Q ss_pred             ceeec-CCCccCChhHHHHHHhhhh
Q 008017          210 EYKCD-CGKLFSRRDSFITHRAFCD  233 (581)
Q Consensus       210 py~C~-Cgk~F~~~~~L~~H~~~h~  233 (581)
                      .|.|. |+|.|.++..+.+|...|.
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            47888 8888888888888877664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.019  Score=37.53  Aligned_cols=30  Identities=17%  Similarity=0.503  Sum_probs=23.1

Q ss_pred             ccccccCCCCCccCCCCCCcccCchhhhhhhhccc
Q 008017          145 RKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKH  179 (581)
Q Consensus       145 ~~kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~  179 (581)
                      .+|||.|...||     +..|.....|..|.+.|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            367888887777     888888888888877764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.071  Score=31.80  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             ccccCCCCCccCChHHHHHHHhhcC
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      |-+|.+|..+...+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4579999999999999999999995

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.071  Score=30.82  Aligned_cols=20  Identities=30%  Similarity=0.850  Sum_probs=10.9

Q ss_pred             ceeec-CCCccCChhHHHHHH
Q 008017          210 EYKCD-CGKLFSRRDSFITHR  229 (581)
Q Consensus       210 py~C~-Cgk~F~~~~~L~~H~  229 (581)
                      ||+|. |...|..+..|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            45555 555555555555554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.51  E-value=0.068  Score=31.01  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=21.1

Q ss_pred             cccCCCCCccCChHHHHHHHhhc
Q 008017          108 FLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       108 f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      |.|+.|-|.|.++.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            88999999999999999998763

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.07  Score=31.70  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=16.7

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.|+.|+-..+++++|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            36777777777777777777765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.077  Score=33.52  Aligned_cols=23  Identities=22%  Similarity=0.588  Sum_probs=20.0

Q ss_pred             cccccccCCccCChhHHHHHHhh
Q 008017          183 KWKCEKCSKKYAVQSDWKAHSKI  205 (581)
Q Consensus       183 p~~C~~Cgk~F~~~s~L~~H~~~  205 (581)
                      .|.|..|+|.|.++..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            47899999999999999999766

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.074  Score=36.41  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             CccccCCCCCccCChHHHHHHHhhcC
Q 008017          106 NRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       106 k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      .-|.|..|+|.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45899999999999999999998884

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.1  Score=35.68  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=14.1

Q ss_pred             ccccccCCccCChhHHHHHHhhhC
Q 008017          184 WKCEKCSKKYAVQSDWKAHSKICG  207 (581)
Q Consensus       184 ~~C~~Cgk~F~~~s~L~~H~~~~g  207 (581)
                      |.|..|+|.|.....|+.|...||
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            556666666666666666655443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.22  Score=29.48  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=21.8

Q ss_pred             ccccCCCCCccCChHHHHHHHhhc
Q 008017          107 RFLCEICNKGFQRDQNLQLHRRGH  130 (581)
Q Consensus       107 ~f~C~~Cgk~F~~~s~L~~H~r~H  130 (581)
                      .|.|+.|+-...+++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999999754

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.81  E-value=0.098  Score=32.07  Aligned_cols=30  Identities=30%  Similarity=0.608  Sum_probs=20.8

Q ss_pred             ccccCCCCCccCCCCCCcccCchhhhhhhhcccCC
Q 008017          147 KVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE  181 (581)
Q Consensus       147 kpy~C~~C~C~~~~~~k~F~~~s~L~~H~~~H~ge  181 (581)
                      |.|.|...+|     +-.|.....|..|+..|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            4566666655     77777777777777777765

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.37  Score=28.59  Aligned_cols=24  Identities=8%  Similarity=-0.200  Sum_probs=22.2

Q ss_pred             ccCCcccccccChhHHHHHHhhcc
Q 008017           65 INFSLFNFIFFQFWGLIDFVLFES   88 (581)
Q Consensus        65 ~~C~~C~k~F~~~~~L~~H~~~h~   88 (581)
                      -+|.+|.....++..|+.|-|+|-
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            479999999999999999999885

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.72  E-value=0.47  Score=29.52  Aligned_cols=24  Identities=29%  Similarity=0.682  Sum_probs=21.7

Q ss_pred             CCccccCCCCCccCChHHHHHHHh
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRR  128 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r  128 (581)
                      ..+|.|.-||..|...+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            457999999999999999999974

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.70  E-value=0.54  Score=27.59  Aligned_cols=22  Identities=32%  Similarity=0.786  Sum_probs=13.7

Q ss_pred             eeec---CCCccCChhHHHHHHhhh
Q 008017          211 YKCD---CGKLFSRRDSFITHRAFC  232 (581)
Q Consensus       211 y~C~---Cgk~F~~~~~L~~H~~~h  232 (581)
                      |.|.   |++.|.....|+.|+-.|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            5563   666666666666666544

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.70  E-value=0.43  Score=30.10  Aligned_cols=27  Identities=15%  Similarity=0.455  Sum_probs=23.3

Q ss_pred             CCccccCCCCCccCChHHHHHHHhhcC
Q 008017          105 TNRFLCEICNKGFQRDQNLQLHRRGHN  131 (581)
Q Consensus       105 ~k~f~C~~Cgk~F~~~s~L~~H~r~H~  131 (581)
                      +..|.|.+|.+.|...+++.+|..+-+
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            567999999999999999999975543