Query 008018
Match_columns 581
No_of_seqs 246 out of 1931
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.6E-46 5.5E-51 405.5 28.4 379 27-541 1-406 (429)
2 3qe7_A Uracil permease; uracil 67.4 54 0.0019 34.8 13.1 120 416-538 45-200 (429)
3 1bts_A BAND 3 anion transport 23.4 57 0.0019 21.2 2.5 20 132-151 6-25 (26)
4 3dl8_C SECE; RECA-type ATPase 12.6 3.2E+02 0.011 21.1 5.1 45 494-542 13-57 (65)
5 3din_D Preprotein translocase 9.9 3.9E+02 0.013 20.6 4.7 19 494-512 13-31 (65)
6 2bpa_3 Protein (subunit of bac 7.6 2.4E+02 0.0082 19.2 2.1 23 554-576 4-26 (37)
7 3j01_B Preprotein translocase 6.6 3.8E+02 0.013 23.3 3.6 21 494-514 66-86 (116)
8 2zjs_E Preprotein translocase 6.3 4.6E+02 0.016 19.7 3.6 21 495-515 15-35 (60)
9 2dyo_B Autophagy protein 16; u 5.0 2.4E+02 0.0083 21.4 1.1 19 15-33 25-43 (57)
10 2l2t_A Receptor tyrosine-prote 4.9 7.1E+02 0.024 18.0 3.6 23 521-543 10-32 (44)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=1.6e-46 Score=405.52 Aligned_cols=379 Identities=16% Similarity=0.178 Sum_probs=286.2
Q ss_pred hhccccccccCCCchhHHHHHhHHHHHHHHHHHhhhhhhhhccCCCcccccccccCCCCCCCCCccCCCCCCccccCCCC
Q 008018 27 RVGKRFKLKERNTTFTTELRAGTATFLTMAYILAVNASIIADSGGTCTVSDCVALCSNPSVPLANCTTSDPAYRVVQPDE 106 (581)
Q Consensus 27 ~~~~~f~~~~r~~~~~~ei~aG~~tflam~yi~~vnp~il~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (581)
++|++|+++||. +++||+++|+|||++|+|++++||.++ |+|
T Consensus 1 ~~~~~~~~~~~~-~~~~~i~~GlQh~lam~~~~v~~Plil---Gl~---------------------------------- 42 (429)
T 3qe7_A 1 MTRRAIGVSERP-PLLQTIPLSLQHLFAMFGATVLVPVLF---HIN---------------------------------- 42 (429)
T ss_dssp ---CCBCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHTT---TSC----------------------------------
T ss_pred CCCcccCcccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHh---CCC----------------------------------
Confidence 468999999996 799999999999999999999999999 663
Q ss_pred cCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHhC--CccccccCcccchhhhhhhhhccCCCCchHHHHHHH
Q 008018 107 SCKFNPVNPGYQSCLEKLRKDLIVATVASSLIGCVIMGAFAN--LPLALAPGMGTNAYFAYTVVGFHGSGNVSYRSALTA 184 (581)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~li~At~l~agigtLl~gl~a~--lP~~l~pgmGl~a~~a~~vv~~~G~~~~~~~~alga 184 (581)
. .+++++|+++|++|++++| +|..+||+ ++|++... ..+ . ++|+.++++
T Consensus 43 ------------------~----~~~l~~agi~Tllq~~~~~~~lP~~~G~s---fafi~~~~--~i~-~-~g~~~~~ga 93 (429)
T 3qe7_A 43 ------------------P----ATVLLFNGIGTLLYLFICKGKIPAYLGSS---FAFISPVL--LLL-P-LGYEVALGG 93 (429)
T ss_dssp ------------------H----HHHHHHHHHHHHHHHHHTTTCCCCCEEEC---GGGHHHHH--HHG-G-GCHHHHHHH
T ss_pred ------------------H----HHHHHHHHHHHHHHHHHcCCCCCeEecCh---HHHHHHHH--HHH-h-cCHHHHHHH
Confidence 1 3799999999999999864 55555554 33322111 111 1 579999999
Q ss_pred HHHHHHHHHHHHhh--hhH-hhhhhccChhhhhhhhhhHHHHHHHHhhcccccccccccCccchhhccCCccchhccccc
Q 008018 185 VFMEGLIFLFISAI--GFR-SKLAKLVPKPVRISSSAGIGLFLAFIGLQNNQGIGLIGYSSSTLVTLGACPRSARAALAP 261 (581)
Q Consensus 185 v~laGii~lllg~~--~l~-~~l~~~iP~~V~~gi~aGIGL~Ia~iGL~~~~G~Giiv~~~~t~~~lg~~p~~~~~~~~~ 261 (581)
++++|+++++++++ |+| +|++|++||.|.+.+.+.||+.++.+++++..+ . .. . +
T Consensus 94 vi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~--~--~~--~----~------------ 151 (429)
T 3qe7_A 94 FIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGL--L--PA--E----G------------ 151 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTS--S--CB--T----T------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccc--c--CC--C----C------------
Confidence 99999999999998 776 799999999998888888888888777765411 0 00 0 0
Q ss_pred hhhccCCCcccCCCCCccCccccccCCCChhHHHHHHHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHhcCcccc
Q 008018 262 VVTAANGTASLIPGGTVSGDILCLRDRMESPTFWLGVVGFVIIAYCLVKNIKG-----AMIYGVVFVTVVSWFRNTKVTA 336 (581)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~llglvgl~iiivl~~~~v~g-----aiLigIi~gtila~~~G~~v~~ 336 (581)
+..+.+..+++++++++++++. |+.|+ ++|+|++++|++++++|. .|
T Consensus 152 -------------------------~~~~~~~~~la~~tl~iii~~~-~~~kg~~~~~aiLigivvg~~~a~~~G~--~d 203 (429)
T 3qe7_A 152 -------------------------QTPDSKTIIISITTLAVTVLGS-VLFRGFLAIIPILIGVLVGYALSFAMGI--VD 203 (429)
T ss_dssp -------------------------BCCCHHHHHHHHHHHHHHHHHH-HSSSTTTTTHHHHHHHHHHHHHHHHHHH--TT
T ss_pred -------------------------ccccHHHHHHHHHHHHHHHHHH-HHhcccchhhHHHHHHHHHHHHHHHhcC--CC
Confidence 0123456678889988776664 45555 899999999999999986 56
Q ss_pred CCCCCcCCccccccccceeccccchhhcccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHhhhccccCCCC-CccCcC
Q 008018 337 FPDTDAGNSAHKYFKKVVDVHVIESTAGALSFKSMGKGYFWEAVVTFLYVDILDTTGTLYSMARFAGFTDQNG-DFEGQY 415 (581)
Q Consensus 337 ~p~~~vg~~~~~~~~~~~~lP~~~~~~~~fd~~~i~~~~~~~~i~~~~lV~~~etiGtl~ava~~ag~~d~~g-~~~~~~ 415 (581)
++. +++ ++|+++|++. .++||++. +..++++++++++|++|+..++++++ |++. ++++.|
T Consensus 204 ~~~--v~~------a~~~~lP~~~--~P~f~~~~------i~~i~~i~lV~~~Eslg~~~av~~~~---g~~~~~~~~~~ 264 (429)
T 3qe7_A 204 TTP--IIN------AHWFALPTLY--TPRFEWFA------ILTILPAALVVIAEHVGHLVVTANIV---KKDLLRDPGLH 264 (429)
T ss_dssp SSH--HHH------SCSSCCCCCC--CCCCCHHH------HHHHTHHHHHHHHHHHHHHHHHHHHH---TSCTCCCCCHH
T ss_pred ccc--ccc------cccccccCCC--CCcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCCCCCcc
Confidence 543 222 2578888864 44677654 34567888999999999999999875 4555 578999
Q ss_pred hhhhhhhHHHHHhhhcCCCccccchhhhhhhh-cccccchhHHHHHHHHHHHHH---HHHHHhhcChHHHHHH-HHHHHH
Q 008018 416 FAFMSDAMSIVVGALLGTSPVTTFIESSTGIR-EGGRTGLTALTVAGYFFLALF---FTPLLASIPAWAVGPP-LILVGV 490 (581)
Q Consensus 416 ~~LiadGlanivgglfG~~PvTsf~eSaa~v~-aGarTglsavv~g~~fll~lf---l~Pli~~IP~aalaga-LIlvG~ 490 (581)
|++++||++|+++++||++|+|+|+||++.++ .|.|||.+.+.+|+++++..+ +.++++.||.+++|++ ++++|.
T Consensus 265 r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~ 344 (429)
T 3qe7_A 265 RSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGV 344 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997765 588999988777777654332 4569999999999999 468888
Q ss_pred HHHHHh-----hccccccccchhhHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 008018 491 LMMRSV-----VEIEWDDMRQAIPAFLTLIL-M-----PLTYSIAYGLIGGICTYIVLHIWD 541 (581)
Q Consensus 491 ~m~~~l-----~~I~~~~~~e~ipaf~tiv~-~-----plt~sI~~GI~~G~i~yvil~l~~ 541 (581)
+...++ +++|+++++|.+..-+.+.+ + |+..=..+|+++|.++.+++|++.
T Consensus 345 i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~~~~gi~~~~~~ai~ln~~l 406 (429)
T 3qe7_A 345 IGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIF 406 (429)
T ss_dssp HHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhccCcHHHHHHHHHHHHHHh
Confidence 876554 55678776676554433322 1 111113579999999999999887
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=67.37 E-value=54 Score=34.82 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=64.9
Q ss_pred hhhhhhhHHHHHhhhcCCC--cc----c-cchhhhhhhhcccccch----hHH-HHHHHHHHH-HHHH-----HHHhhcC
Q 008018 416 FAFMSDAMSIVVGALLGTS--PV----T-TFIESSTGIREGGRTGL----TAL-TVAGYFFLA-LFFT-----PLLASIP 477 (581)
Q Consensus 416 ~~LiadGlanivgglfG~~--Pv----T-sf~eSaa~v~aGarTgl----sav-v~g~~fll~-lfl~-----Pli~~IP 477 (581)
..+++-|+++++=+++++. |. + +|+--...+. + -|+ .++ +.|+++++. +++. -+...+|
T Consensus 45 ~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~--~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~P 121 (429)
T 3qe7_A 45 TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--P-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFP 121 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHG--G-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHH--h-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 5688888888888777543 33 1 2221111111 1 233 333 344444332 2322 4889999
Q ss_pred hHHHHHHHHHHHHHHHHH-hhcc-------ccccccchhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 008018 478 AWAVGPPLILVGVLMMRS-VVEI-------EWDDMRQAIPAFLTLILMPLT----------YSIAYGLIGGICTYIVLH 538 (581)
Q Consensus 478 ~aalagaLIlvG~~m~~~-l~~I-------~~~~~~e~ipaf~tiv~~plt----------~sI~~GI~~G~i~yvil~ 538 (581)
..++|+.+.++|...... ++.. ++.+..+...++++++.+.+. +++..|+..|.+.+..+.
T Consensus 122 pvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G 200 (429)
T 3qe7_A 122 PAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMG 200 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 989999988999887632 2221 122223444555555443322 267777777776665543
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=23.43 E-value=57 Score=21.25 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhCCcc
Q 008018 132 TVASSLIGCVIMGAFANLPL 151 (581)
Q Consensus 132 t~l~agigtLl~gl~a~lP~ 151 (581)
+++++++++++.++++.-|+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 56788899999999999886
No 4
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=12.60 E-value=3.2e+02 Score=21.09 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008018 494 RSVVEIEWDDMRQAIPAFLTLILMPLTYSIAYGLIGGICTYIVLHIWDW 542 (581)
Q Consensus 494 ~~l~~I~~~~~~e~ipaf~tiv~~plt~sI~~GI~~G~i~yvil~l~~~ 542 (581)
.++|++.|-+++|..-....++. +.+..++.++.+=+++.++..+
T Consensus 13 ~ElkKV~WPtr~e~~~~T~vViv----~v~i~~~~i~~vD~~~~~~~~~ 57 (65)
T 3dl8_C 13 DELKRVVWPSRELVVKATISVII----FSLAIGVYLWILDLTFTKIISF 57 (65)
T ss_dssp ---------------CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999887755443332 2334444444444444433333
No 5
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=9.85 E-value=3.9e+02 Score=20.60 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=14.0
Q ss_pred HHhhccccccccchhhHHH
Q 008018 494 RSVVEIEWDDMRQAIPAFL 512 (581)
Q Consensus 494 ~~l~~I~~~~~~e~ipaf~ 512 (581)
.+++++.|-+++|..-..+
T Consensus 13 ~ElkKV~WPtr~e~~~~T~ 31 (65)
T 3din_D 13 AEAKKISWPSRKELLTSFG 31 (65)
T ss_dssp HHHHHHHHHHCCCCCTTHH
T ss_pred HHHhcccCcCHHHHHhHHH
Confidence 5778999988888665443
No 6
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=7.63 E-value=2.4e+02 Score=19.19 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=16.5
Q ss_pred ecCCCCCCCCcccccccCCCCCc
Q 008018 554 KKKSSGVSGAPQQIREGDGNGKA 576 (581)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~ 576 (581)
|++|..-.|.||.+|.-.|.-|-
T Consensus 4 kkrsgarpgrpqplrgtkgkrkg 26 (37)
T 2bpa_3 4 KKRSGARPGRPQPLRGTKGKRKG 26 (37)
T ss_dssp CCCCCCCCSCCCCBCCSCCSSCC
T ss_pred cccCCCCCCCCcccccccccccc
Confidence 44555567999999987776654
No 7
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=6.60 E-value=3.8e+02 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHhhccccccccchhhHHHHH
Q 008018 494 RSVVEIEWDDMRQAIPAFLTL 514 (581)
Q Consensus 494 ~~l~~I~~~~~~e~ipaf~ti 514 (581)
.++|++.|-+++|..-....+
T Consensus 66 ~ElkKV~WPtr~E~~~~T~vV 86 (116)
T 3j01_B 66 TEVRKVIWPTRQETLHTTLIV 86 (116)
T ss_dssp HHHHHHHTTTTTSCHHHHHHH
T ss_pred HHhheeeCcCHHHHHhHHHHH
Confidence 467889999999977654433
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=6.31 E-value=4.6e+02 Score=19.74 Aligned_cols=21 Identities=10% Similarity=0.414 Sum_probs=15.1
Q ss_pred HhhccccccccchhhHHHHHH
Q 008018 495 SVVEIEWDDMRQAIPAFLTLI 515 (581)
Q Consensus 495 ~l~~I~~~~~~e~ipaf~tiv 515 (581)
++|++.|-+++|..-....++
T Consensus 15 ElkKV~WPtr~e~~~~t~vVi 35 (60)
T 2zjs_E 15 ELARVTWPTREQVVEGTQAIL 35 (60)
T ss_dssp CCCCCCCSCSSSHHHHHHHHH
T ss_pred HHhhccCcCHHHHHHHHHHHH
Confidence 568889999999776544333
No 9
>2dyo_B Autophagy protein 16; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_B
Probab=5.00 E-value=2.4e+02 Score=21.35 Aligned_cols=19 Identities=5% Similarity=-0.017 Sum_probs=15.3
Q ss_pred hhhhhHHHHhhhhhccccc
Q 008018 15 PLTRLNALVASSRVGKRFK 33 (581)
Q Consensus 15 ~~~~~~~~~~~~~~~~~f~ 33 (581)
-+..++++..|+..|+.|.
T Consensus 25 D~~lLdRL~qRD~vE~rF~ 43 (57)
T 2dyo_B 25 DDLLIRRLTDRNDKEAHLN 43 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568899999998888775
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.89 E-value=7.1e+02 Score=18.03 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008018 521 YSIAYGLIGGICTYIVLHIWDWG 543 (581)
Q Consensus 521 ~sI~~GI~~G~i~yvil~l~~~~ 543 (581)
.+|+.|+..|++.-+++-+..|+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHHHHHH
Confidence 45788888888776665544433
Done!