Query 008018
Match_columns 581
No_of_seqs 246 out of 1931
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 16:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 12.9 1.2E+02 0.0085 18.5 3.6 17 514-530 9-25 (32)
2 d1edqa1 b.1.18.2 (A:24-132) Ch 2.7 93 0.0068 25.0 -1.3 24 74-102 84-107 (109)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.4 8.8E+02 0.064 21.2 5.3 13 510-522 62-74 (248)
4 d1qu6a2 d.50.1.1 (A:91-179) ds 2.1 4.6E+02 0.034 19.1 2.2 32 9-40 10-41 (89)
5 d2bi6h1 g.3.12.1 (H:8-31) Brom 1.7 3.8E+02 0.028 15.4 0.8 11 74-84 3-13 (26)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 1.7 8.5E+02 0.062 14.0 2.4 14 317-330 2-15 (27)
7 d1cola_ f.1.1.1 (A:) Colicin A 1.5 1.5E+03 0.11 19.1 4.9 26 457-482 144-169 (197)
8 d2e74d2 f.23.12.1 (D:12-45) IS 1.4 1.1E+03 0.081 14.3 3.0 19 519-538 11-29 (34)
9 d1ju8a_ g.3.6.4 (A:) Leginsuli 1.4 7E+02 0.051 15.7 1.6 19 76-96 1-19 (37)
10 d2heyr2 g.24.1.1 (R:143-166) T 1.3 4.1E+02 0.03 15.3 0.3 6 89-94 2-7 (26)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.91 E-value=1.2e+02 Score=18.55 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008018 514 LILMPLTYSIAYGLIGG 530 (581)
Q Consensus 514 iv~~plt~sI~~GI~~G 530 (581)
++++.+.|+|+.||.+.
T Consensus 9 ivfialffgiavgiifa 25 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheee
Confidence 34445556666655543
No 2
>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N {Serratia marcescens [TaxId: 615]}
Probab=2.75 E-value=93 Score=24.97 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=16.9
Q ss_pred ccccccccCCCCCCCCCccCCCCCCcccc
Q 008018 74 TVSDCVALCSNPSVPLANCTTSDPAYRVV 102 (581)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (581)
.+.--++|||.. .||+|+|.--.|
T Consensus 84 ~y~m~V~LcN~~-----Gcs~S~~v~V~V 107 (109)
T d1edqa1 84 RYQMQVALCNAD-----GCTASDATEIVV 107 (109)
T ss_dssp EEEEEEEEEETT-----EEEECCCEEEEE
T ss_pred EEEEEEEEEcCC-----CcccccCEEEEe
Confidence 344457899987 699999764333
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.43 E-value=8.8e+02 Score=21.16 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 008018 510 AFLTLILMPLTYS 522 (581)
Q Consensus 510 af~tiv~~plt~s 522 (581)
.++++++.|+.|.
T Consensus 62 ~l~~Fvi~Pi~yT 74 (248)
T d2r6gf1 62 GMGLFVLFPLVCT 74 (248)
T ss_dssp HHHHHTHHHHHHH
T ss_pred HHHHHHHHhheeE
Confidence 3444445565554
No 4
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.08 E-value=4.6e+02 Score=19.07 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=22.7
Q ss_pred CCCCChhhhhhHHHHhhhhhccccccccCCCc
Q 008018 9 SNSNPKPLTRLNALVASSRVGKRFKLKERNTT 40 (581)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~~ 40 (581)
.-+.-+++.++|.+-++..+.-.|+..+.+..
T Consensus 10 ~~~~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~ 41 (89)
T d1qu6a2 10 GLSMGNYIGLINRIAQKKRLTVNYEQCASGVH 41 (89)
T ss_dssp CCCCCCCHHHHHHHHHHSCCEEEEEEEEECSS
T ss_pred CccccCHHHHHHHHHHhcCCCcceeeeccCCC
Confidence 33444578899999998877767777766543
No 5
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=1.74 E-value=3.8e+02 Score=15.41 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=6.9
Q ss_pred ccccccccCCC
Q 008018 74 TVSDCVALCSN 84 (581)
Q Consensus 74 ~~~~~~~~~~~ 84 (581)
+++||-+.|..
T Consensus 3 tysdcpgfckt 13 (26)
T d2bi6h1 3 TYSDCPGFCKT 13 (26)
T ss_dssp CCSSCCTTCSS
T ss_pred ccccCchHHHH
Confidence 46677776643
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.70 E-value=8.5e+02 Score=14.04 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHh
Q 008018 317 IYGVVFVTVVSWFR 330 (581)
Q Consensus 317 LigIi~gtila~~~ 330 (581)
.+|+++.|+.+.+.
T Consensus 2 vlgli~~tl~glf~ 15 (27)
T d2e74g1 2 VLGLVFATLGGLFY 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 45666666666554
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.50 E-value=1.5e+03 Score=19.10 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcChHHHH
Q 008018 457 LTVAGYFFLALFFTPLLASIPAWAVG 482 (581)
Q Consensus 457 vv~g~~fll~lfl~Pli~~IP~aala 482 (581)
.++..+|...+...++.-.+|..++|
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iG 169 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVG 169 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHH
Confidence 33333343344444444456654444
No 8
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.40 E-value=1.1e+03 Score=14.27 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008018 519 LTYSIAYGLIGGICTYIVLH 538 (581)
Q Consensus 519 lt~sI~~GI~~G~i~yvil~ 538 (581)
+||+-..|+++|.+ |.+.|
T Consensus 11 ltfgt~tg~alg~l-ypvvk 29 (34)
T d2e74d2 11 LAFGTVTGVALGAL-YPLVK 29 (34)
T ss_dssp HHHHHHHHHHHHHH-HHHHH
T ss_pred HHHhhHHHHHHhhh-hhHHh
Confidence 57888899999975 44443
No 9
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=1.38 E-value=7e+02 Score=15.67 Aligned_cols=19 Identities=42% Similarity=0.894 Sum_probs=10.3
Q ss_pred ccccccCCCCCCCCCccCCCC
Q 008018 76 SDCVALCSNPSVPLANCTTSD 96 (581)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~ 96 (581)
+||-+.||.-..| -|.++|
T Consensus 1 a~C~G~CspFemP--pc~s~d 19 (37)
T d1ju8a_ 1 ADCNGACSPFEVP--PCRSRD 19 (37)
T ss_dssp CCSCSEECSSSSS--SSSCTT
T ss_pred CCccccccccccC--CCCCCC
Confidence 3566777765444 344443
No 10
>d2heyr2 g.24.1.1 (R:143-166) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.29 E-value=4.1e+02 Score=15.29 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=3.0
Q ss_pred CCccCC
Q 008018 89 LANCTT 94 (581)
Q Consensus 89 ~~~~~~ 94 (581)
..|||-
T Consensus 2 wtnctl 7 (26)
T d2heyr2 2 WTNCTL 7 (26)
T ss_dssp CCCTTT
T ss_pred ccccee
Confidence 445553
Done!