BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008019
         (581 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
          Length = 237

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 11  PARDFWLLR-YTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG 69
           P+RDF +LR + + L  G   +   S+ + +      Q    VRA ++ S YLI PC  G
Sbjct: 132 PSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-----AQLLGGVRAVVMDSQYLIEPCGSG 186

Query: 70  GSIIHIVDHMDLE 82
            S +  +  +DL+
Sbjct: 187 KSRLTHICRIDLK 199


>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
 pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
 pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
           Rubidium
          Length = 1034

 Score = 28.9 bits (63), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)

Query: 393 QENVASMARQY----VRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQS 448
           Q +VA + ++Y     +G+ AS+    L     R G NA LRPP G+PE    AR +   
Sbjct: 55  QLSVAELEQKYQTSATKGLSASLAAELLL----RDGPNA-LRPPRGTPEYVKFARQLAGG 109

Query: 449 YRCYL 453
            +C +
Sbjct: 110 LQCLM 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,948,543
Number of Sequences: 62578
Number of extensions: 695695
Number of successful extensions: 1285
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 7
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)