Query 008019
Match_columns 581
No_of_seqs 211 out of 389
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 18:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08670 MEKHLA: MEKHLA domain 100.0 1.7E-61 3.7E-66 452.5 16.7 146 436-581 1-148 (148)
2 cd08875 START_ArGLABRA2_like C 100.0 2.9E-46 6.2E-51 371.6 12.7 110 1-113 119-229 (229)
3 smart00234 START in StAR and p 99.3 9.1E-12 2E-16 120.4 12.5 102 9-114 104-206 (206)
4 PF01852 START: START domain; 99.3 6.2E-12 1.3E-16 121.2 10.1 106 3-112 98-204 (206)
5 cd00177 START Lipid-binding ST 98.8 3E-08 6.5E-13 93.3 11.0 99 3-110 91-189 (193)
6 cd08868 START_STARD1_3_like Ch 98.5 1.4E-06 3E-11 85.7 12.1 99 8-115 107-208 (208)
7 cd08867 START_STARD4_5_6-like 98.5 1.5E-06 3.2E-11 85.4 11.6 95 8-110 106-202 (206)
8 cd08904 START_STARD6-like Lipi 98.4 8.2E-07 1.8E-11 88.2 9.7 74 7-84 103-178 (204)
9 cd08871 START_STARD10-like Lip 98.4 1.2E-06 2.7E-11 86.8 10.7 105 3-117 100-205 (222)
10 cd08909 START_STARD13-like C-t 98.4 1.2E-06 2.5E-11 87.3 9.9 76 6-88 105-181 (205)
11 PF13426 PAS_9: PAS domain; PD 98.1 3.3E-05 7.2E-10 64.1 10.0 101 474-577 1-101 (104)
12 PLN00188 enhanced disease resi 98.1 2.5E-05 5.4E-10 89.3 11.6 97 8-110 287-387 (719)
13 cd08905 START_STARD1-like Chol 98.0 4.2E-05 9.2E-10 75.8 11.7 100 5-113 103-207 (209)
14 cd08903 START_STARD5-like Lipi 98.0 4.1E-05 8.9E-10 75.9 11.5 94 9-110 107-202 (208)
15 cd08906 START_STARD3-like Chol 98.0 6.3E-05 1.4E-09 74.8 11.4 93 9-110 109-203 (209)
16 cd08869 START_RhoGAP C-termina 97.9 4.3E-05 9.2E-10 75.1 9.2 79 5-90 96-175 (197)
17 cd08907 START_STARD8-like C-te 97.9 5.4E-05 1.2E-09 75.4 9.1 74 8-87 106-180 (205)
18 cd08902 START_STARD4-like Lipi 97.7 0.00012 2.5E-09 72.9 8.8 82 6-98 103-186 (202)
19 cd08874 START_STARD9-like C-te 97.7 0.00037 8.1E-09 69.4 11.2 77 6-87 98-181 (205)
20 cd08908 START_STARD12-like C-t 97.6 0.00022 4.8E-09 71.1 8.9 76 5-88 104-180 (204)
21 PF00989 PAS: PAS fold; Inter 97.3 0.0044 9.6E-08 52.2 11.2 108 466-576 2-111 (113)
22 cd08910 START_STARD2-like Lipi 97.2 0.0023 4.9E-08 63.6 10.1 101 4-113 101-205 (207)
23 cd08877 START_2 Uncharacterize 96.9 0.0084 1.8E-07 59.4 11.5 105 5-113 100-213 (215)
24 cd08873 START_STARD14_15-like 96.9 0.004 8.6E-08 63.6 8.6 71 6-80 130-203 (235)
25 PF08448 PAS_4: PAS fold; Int 96.7 0.013 2.8E-07 49.1 9.4 103 472-578 3-105 (110)
26 cd08871 START_STARD10-like Lip 96.7 0.086 1.9E-06 52.5 16.3 66 143-229 13-80 (222)
27 cd08876 START_1 Uncharacterize 96.6 0.021 4.5E-07 55.1 10.9 92 10-110 99-191 (195)
28 PRK13557 histidine kinase; Pro 96.6 0.019 4.2E-07 62.1 11.8 112 464-576 29-142 (540)
29 cd08872 START_STARD11-like Cer 96.2 0.019 4.1E-07 58.4 8.8 96 5-109 107-220 (235)
30 cd08913 START_STARD14-like Lip 96.2 0.024 5.3E-07 58.0 9.3 76 9-90 139-216 (240)
31 cd08869 START_RhoGAP C-termina 96.2 0.51 1.1E-05 46.5 18.2 58 153-229 17-74 (197)
32 cd08914 START_STARD15-like Lip 96.1 0.022 4.8E-07 58.2 8.5 79 10-94 136-216 (236)
33 cd08870 START_STARD2_7-like Li 96.0 0.059 1.3E-06 53.4 11.0 101 4-114 105-208 (209)
34 cd08904 START_STARD6-like Lipi 95.9 0.56 1.2E-05 47.0 17.0 175 153-418 20-203 (204)
35 PRK13559 hypothetical protein; 95.5 0.1 2.3E-06 54.2 11.0 114 463-577 41-156 (361)
36 cd08911 START_STARD7-like Lipi 95.4 0.13 2.8E-06 51.0 10.7 100 4-113 100-205 (207)
37 cd08907 START_STARD8-like C-te 94.8 3.3 7.2E-05 41.8 18.5 58 152-228 24-81 (205)
38 cd08877 START_2 Uncharacterize 94.7 1.6 3.5E-05 43.2 16.1 73 134-229 4-78 (215)
39 cd08868 START_STARD1_3_like Ch 94.6 1.4 3.1E-05 43.4 15.3 58 152-229 21-81 (208)
40 TIGR00229 sensory_box PAS doma 94.5 0.69 1.5E-05 35.6 10.5 107 466-576 4-112 (124)
41 cd08876 START_1 Uncharacterize 94.3 4.1 8.9E-05 39.2 17.5 61 149-229 10-73 (195)
42 cd00177 START Lipid-binding ST 94.1 4.7 0.0001 37.7 17.1 127 155-337 15-149 (193)
43 PRK11091 aerobic respiration c 94.1 0.32 7E-06 56.5 11.0 110 465-577 155-265 (779)
44 cd00130 PAS PAS domain; PAS mo 93.7 1.4 3.1E-05 31.7 10.3 98 474-575 2-100 (103)
45 TIGR02938 nifL_nitrog nitrogen 93.6 0.3 6.6E-06 51.8 8.9 110 465-577 4-114 (494)
46 cd08874 START_STARD9-like C-te 93.4 0.57 1.2E-05 46.9 10.0 56 152-228 19-76 (205)
47 cd08909 START_STARD13-like C-t 92.9 10 0.00022 38.3 17.9 56 155-229 27-82 (205)
48 cd08906 START_STARD3-like Chol 92.5 6.2 0.00014 39.4 15.9 72 136-229 8-82 (209)
49 cd08908 START_STARD12-like C-t 92.0 8.7 0.00019 38.6 16.2 55 156-229 28-82 (204)
50 PRK13558 bacterio-opsin activa 92.0 1.2 2.7E-05 50.8 11.5 109 468-577 151-261 (665)
51 cd08910 START_STARD2-like Lipi 91.9 9.3 0.0002 38.0 16.2 59 152-229 22-82 (207)
52 PRK13560 hypothetical protein; 91.9 1.1 2.4E-05 51.2 11.0 110 466-577 205-316 (807)
53 cd08870 START_STARD2_7-like Li 91.6 13 0.00029 36.7 17.0 59 154-229 21-83 (209)
54 TIGR02040 PpsR-CrtJ transcript 91.6 0.99 2.1E-05 48.9 9.7 94 467-565 254-349 (442)
55 TIGR02040 PpsR-CrtJ transcript 91.3 1.3 2.9E-05 47.9 10.4 85 465-551 133-218 (442)
56 PF13188 PAS_8: PAS domain; PD 91.0 0.37 8.1E-06 37.9 4.4 41 466-512 2-43 (64)
57 cd08903 START_STARD5-like Lipi 90.6 18 0.0004 35.9 16.8 57 153-229 20-80 (208)
58 PF01852 START: START domain; 90.3 14 0.00031 35.4 15.6 149 137-337 2-157 (206)
59 smart00234 START in StAR and p 89.7 5.7 0.00012 38.4 12.2 131 154-338 18-158 (206)
60 cd08875 START_ArGLABRA2_like C 89.6 15 0.00032 37.8 15.4 164 133-337 3-181 (229)
61 PRK09776 putative diguanylate 87.3 2.8 6.1E-05 50.2 10.1 108 464-574 282-391 (1092)
62 PRK11359 cyclic-di-GMP phospho 87.3 3.8 8.3E-05 47.3 10.8 102 473-577 145-247 (799)
63 cd08913 START_STARD14-like Lip 86.8 6.6 0.00014 40.5 11.0 56 152-229 56-113 (240)
64 PRK11073 glnL nitrogen regulat 86.5 2.3 5E-05 43.8 7.7 90 468-563 10-100 (348)
65 PRK10060 RNase II stability mo 85.8 4.6 9.9E-05 46.8 10.4 88 466-555 112-201 (663)
66 PF08447 PAS_3: PAS fold; Int 83.9 6.9 0.00015 32.0 8.0 82 489-572 2-88 (91)
67 cd08873 START_STARD14_15-like 82.3 2 4.4E-05 44.1 5.0 54 153-228 53-108 (235)
68 cd08905 START_STARD1-like Chol 80.5 65 0.0014 32.1 15.9 72 136-229 8-82 (209)
69 PRK11360 sensory histidine kin 80.5 16 0.00034 39.8 11.4 107 466-577 263-370 (607)
70 cd08911 START_STARD7-like Lipi 80.2 12 0.00025 37.3 9.4 59 152-229 18-78 (207)
71 cd08914 START_STARD15-like Lip 76.5 4.1 8.9E-05 41.9 5.0 56 152-229 53-110 (236)
72 PF13596 PAS_10: PAS domain; P 74.3 12 0.00025 32.3 6.7 97 473-577 8-104 (106)
73 PRK09776 putative diguanylate 73.9 21 0.00045 43.0 10.9 107 467-577 538-650 (1092)
74 cd08864 SRPBCC_DUF3074 DUF3074 73.1 14 0.0003 37.2 7.7 78 5-88 100-184 (208)
75 cd08872 START_STARD11-like Cer 72.6 13 0.00028 37.9 7.6 65 146-228 17-84 (235)
76 smart00091 PAS PAS domain. PAS 72.6 13 0.00029 24.5 5.4 53 468-522 4-57 (67)
77 cd08867 START_STARD4_5_6-like 70.5 1.1E+02 0.0024 30.0 17.9 68 135-228 8-79 (206)
78 PRK11359 cyclic-di-GMP phospho 68.4 23 0.0005 41.0 9.3 99 470-572 18-120 (799)
79 PRK13560 hypothetical protein; 66.3 50 0.0011 37.9 11.4 109 465-577 332-461 (807)
80 TIGR02966 phoR_proteo phosphat 65.5 19 0.00042 35.9 7.0 49 465-515 6-55 (333)
81 PRK11006 phoR phosphate regulo 64.2 15 0.00033 39.5 6.4 49 465-515 98-147 (430)
82 cd08902 START_STARD4-like Lipi 58.8 2.1E+02 0.0046 29.1 18.3 59 151-229 19-79 (202)
83 PRK10820 DNA-binding transcrip 57.1 60 0.0013 36.8 9.8 101 465-576 80-183 (520)
84 cd07821 PYR_PYL_RCAR_like Pyra 45.5 58 0.0013 28.4 5.9 46 60-109 90-135 (140)
85 PLN00188 enhanced disease resi 42.7 1.5E+02 0.0032 35.5 10.0 99 204-337 233-341 (719)
86 COG2202 AtoS FOG: PAS/PAC doma 41.8 2E+02 0.0044 23.9 9.5 77 472-550 120-198 (232)
87 KOG2761 START domain-containin 41.3 1.1E+02 0.0024 31.4 7.7 56 4-64 108-163 (219)
88 cd08866 SRPBCC_11 Ligand-bindi 39.2 76 0.0016 28.4 5.8 48 62-113 94-143 (144)
89 PF10604 Polyketide_cyc2: Poly 34.0 1.2E+02 0.0025 26.5 6.0 20 61-81 89-108 (139)
90 PRK11086 sensory histidine kin 32.7 2.5E+02 0.0055 30.6 9.6 95 468-577 224-322 (542)
91 COG1415 Uncharacterized conser 31.8 1.9E+02 0.0041 31.8 8.0 124 421-557 7-161 (373)
92 cd07813 COQ10p_like Coenzyme Q 29.3 1.3E+02 0.0028 27.0 5.5 51 60-114 86-137 (138)
93 TIGR02938 nifL_nitrog nitrogen 25.8 1.2E+02 0.0027 32.0 5.6 40 467-508 132-172 (494)
94 KOG2761 START domain-containin 24.8 41 0.00089 34.5 1.6 59 151-229 25-86 (219)
95 cd07818 SRPBCC_1 Ligand-bindin 24.8 1.2E+02 0.0025 27.4 4.5 32 62-94 98-129 (150)
96 KOG2200 Tumour suppressor prot 24.4 23 0.0005 40.9 -0.2 63 11-85 577-639 (674)
97 cd07822 SRPBCC_4 Ligand-bindin 24.1 1.4E+02 0.0031 25.9 4.8 50 61-113 91-141 (141)
98 cd08865 SRPBCC_10 Ligand-bindi 22.4 1.6E+02 0.0035 25.4 4.8 46 61-109 89-134 (140)
99 cd08861 OtcD1_ARO-CYC_like N-t 21.5 1.6E+02 0.0034 26.2 4.6 21 62-82 91-111 (142)
100 cd08865 SRPBCC_10 Ligand-bindi 20.9 62 0.0013 28.1 1.8 27 201-228 2-30 (140)
101 COG0339 Dcp Zn-dependent oligo 20.3 63 0.0014 38.2 2.1 45 526-571 362-410 (683)
102 cd08866 SRPBCC_11 Ligand-bindi 20.1 76 0.0016 28.4 2.2 27 201-228 2-30 (144)
103 PF08410 DUF1737: Domain of un 20.1 2.1E+02 0.0045 23.3 4.4 39 521-560 15-53 (54)
No 1
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.7e-61 Score=452.52 Aligned_cols=146 Identities=41% Similarity=0.625 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--CChhHHHHHHhcCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccc
Q 008019 436 PEAHTLARWICQSYRCYLGAELLKC--EGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEK 513 (581)
Q Consensus 436 pe~~~l~~~i~~SY~~~~G~~L~~~--~~~~~~~~~L~~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~ 513 (581)
||++.|+++|++||+++||++|++. .+.++.+++||+||||||||++|+||+|||||++||+||||+|+||++|||||
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~ 80 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRL 80 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhh
Confidence 7999999999999999999999993 45679999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeeccceeC
Q 008019 514 IFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 581 (581)
Q Consensus 514 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~W~~l 581 (581)
||||++|+||+++|++|++|||+++|+||||||+||||+||+|+||||+|++|+++||||||.||+||
T Consensus 81 sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 81 SAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred ccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 2
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.9e-46 Score=371.56 Aligned_cols=110 Identities=34% Similarity=0.541 Sum_probs=104.0
Q ss_pred CcccccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeee
Q 008019 1 MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 80 (581)
Q Consensus 1 ~qm~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e 80 (581)
+|||+||||||+|||||||||||++||+|||||||+|+.+. .++.++|+||||+|||||||||+|||||||||||+|
T Consensus 119 ael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~---~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e 195 (229)
T cd08875 119 AELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT---APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVE 195 (229)
T ss_pred hhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc---CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEe
Confidence 59999999999999999999999999999999999998763 334457899999999999999999999999999999
Q ss_pred ccCCCcccccccccchhHHHHHHHHHHHH-Hhhh
Q 008019 81 LEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLR 113 (581)
Q Consensus 81 ~d~~~v~~l~RpL~~Sg~afga~rw~aaL-R~~e 113 (581)
||++.+|.+||+++.||+||||+||+++| ||||
T Consensus 196 ~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 196 VDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred ccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 8997
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.34 E-value=9.1e-12 Score=120.43 Aligned_cols=102 Identities=37% Similarity=0.529 Sum_probs=91.0
Q ss_pred CccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCccc
Q 008019 9 LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 88 (581)
Q Consensus 9 Lvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v~~ 88 (581)
++++|||.++|+++++++|.|+|+..|++.. ..|+...++|++.++||++|+++++|.|+|||+.|+|..-+-.+-
T Consensus 104 p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~ 179 (206)
T smart00234 104 PVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHW 179 (206)
T ss_pred cCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccce
Confidence 4667999999999999999999999999753 334456899999999999999999999999999999999997788
Q ss_pred ccccccchhHHHHHHHHHHHHH-hhhc
Q 008019 89 VLRPLYESSTLIAQKTTMAALR-HLRQ 114 (581)
Q Consensus 89 l~RpL~~Sg~afga~rw~aaLR-~~er 114 (581)
+.+.++.++.....+++.++|+ +|++
T Consensus 180 lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 180 LVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred eehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999994 7763
No 4
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.32 E-value=6.2e-12 Score=121.21 Aligned_cols=106 Identities=31% Similarity=0.456 Sum_probs=92.3
Q ss_pred ccccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeecc
Q 008019 3 LYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLE 82 (581)
Q Consensus 3 m~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d 82 (581)
+..++|+.| |||.++|++++.++|.++|+.+|++.....+. ...++|+..++||++|++.++|.|+||+|-|+|..
T Consensus 98 ~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~---~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~ 173 (206)
T PF01852_consen 98 SPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN---SKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPK 173 (206)
T ss_dssp -CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT----TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESS
T ss_pred ccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccc---ccCcceeeeeeEeEEEEEccCCCceEEEEEEECCC
Confidence 345678888 99999999999999999999999986433221 45789999999999999999999999999999999
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHH-hh
Q 008019 83 PWSVPEVLRPLYESSTLIAQKTTMAALR-HL 112 (581)
Q Consensus 83 ~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~ 112 (581)
-+..+-+.+.++.+...-..+.+.++|| |+
T Consensus 174 G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 174 GWIPSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 9988899999999999888999998885 44
No 5
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.81 E-value=3e-08 Score=93.28 Aligned_cols=99 Identities=29% Similarity=0.464 Sum_probs=79.0
Q ss_pred ccccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeecc
Q 008019 3 LYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLE 82 (581)
Q Consensus 3 m~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d 82 (581)
+..|.| +++|||.++|++.+.++|.++++-.|++.. ..|....++|++++++|++|+++++|.|+||++-|+|..
T Consensus 91 ~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~ 165 (193)
T cd00177 91 TKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPK 165 (193)
T ss_pred eeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCC
Confidence 456777 999999999999999999999999999863 223334789999999999999999999999999999988
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHH
Q 008019 83 PWSVPEVLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 83 ~~~v~~l~RpL~~Sg~afga~rw~aaLR 110 (581)
-+. | ..++.+...-+...++..++
T Consensus 166 g~i-P---~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 166 GSI-P---KSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCc-c---HHHHHhhhhhccHHHHHHHH
Confidence 654 3 35555555555555555554
No 6
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.48 E-value=1.4e-06 Score=85.67 Aligned_cols=99 Identities=25% Similarity=0.423 Sum_probs=80.5
Q ss_pred cCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCC--CceEEEEEEeeeccCCC
Q 008019 8 TLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEG--GGSIIHIVDHMDLEPWS 85 (581)
Q Consensus 8 pLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~n--G~SkVtwVeH~e~d~~~ 85 (581)
++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..+++|++|+|+++ +.|+|+|+-|+|..-+
T Consensus 107 ~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~- 180 (208)
T cd08868 107 GLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW- 180 (208)
T ss_pred CcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-
Confidence 578999999999999866 779999999763 33455668999999999999999987 6899999999998755
Q ss_pred cccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019 86 VPEVLRPLYESSTLIAQKTTMAALR-HLRQI 115 (581)
Q Consensus 86 v~~l~RpL~~Sg~afga~rw~aaLR-~~erl 115 (581)
+|. -++++.+.-+.-.++..|| +|+.|
T Consensus 181 iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 181 LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 553 3466777778888999995 88754
No 7
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.45 E-value=1.5e-06 Score=85.38 Aligned_cols=95 Identities=28% Similarity=0.397 Sum_probs=76.6
Q ss_pred cCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--CCceEEEEEEeeeccCCC
Q 008019 8 TLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWS 85 (581)
Q Consensus 8 pLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--nG~SkVtwVeH~e~d~~~ 85 (581)
++|.+|||..+||+++.++|.++++-.|++. |..|+...++|+++.++|++|+|.+ ++.|+|||+-|+|..- .
T Consensus 106 ~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~ 180 (206)
T cd08867 106 GLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-M 180 (206)
T ss_pred CccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-C
Confidence 4699999999999999999999999999864 2345566899999999999999986 5789999999999874 4
Q ss_pred cccccccccchhHHHHHHHHHHHHH
Q 008019 86 VPEVLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 86 v~~l~RpL~~Sg~afga~rw~aaLR 110 (581)
+| +-++++.++=+.--|+..||
T Consensus 181 iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 181 IP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred Cc---HHHHHhhhhhhHHHHHHHHH
Confidence 55 35565555555566777775
No 8
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.45 E-value=8.2e-07 Score=88.23 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=65.1
Q ss_pred ccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCC--ceEEEEEEeeeccCC
Q 008019 7 TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG--GSIIHIVDHMDLEPW 84 (581)
Q Consensus 7 SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG--~SkVtwVeH~e~d~~ 84 (581)
-++|-+|||..+||.++.++|.++|+..|++- |..|+...|+|++..|+||+|+|.+++ +|+++|+-++|+.-|
T Consensus 103 ~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 103 MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 46899999999999999999999999999863 446667789999999999999999874 899999999887744
No 9
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.44 E-value=1.2e-06 Score=86.85 Aligned_cols=105 Identities=26% Similarity=0.340 Sum_probs=83.5
Q ss_pred ccccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeecc
Q 008019 3 LYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLE 82 (581)
Q Consensus 3 m~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d 82 (581)
+.+|-| +..|||.++|..+..+ |..+|+..|++. +..|....++|+....+|++|++++++.|+||++-|+|..
T Consensus 100 ~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~ 173 (222)
T cd08871 100 AKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPK 173 (222)
T ss_pred eECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCC
Confidence 345666 8999999999998776 888999999874 3345556899999999999999999999999999999987
Q ss_pred CCCcccccccccchhHHHHHHHHHHHHH-hhhcccc
Q 008019 83 PWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQISQ 117 (581)
Q Consensus 83 ~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~erla~ 117 (581)
-+ +|. -+++....-+...++..|| .|++...
T Consensus 174 G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 174 GS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred CC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 65 552 3555555566778888885 7777544
No 10
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.41 E-value=1.2e-06 Score=87.27 Aligned_cols=76 Identities=34% Similarity=0.494 Sum_probs=63.0
Q ss_pred cccCccCceeEEEEeeee-ecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCC
Q 008019 6 PTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 84 (581)
Q Consensus 6 ~SpLvp~Ref~fLRYc~~-le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~ 84 (581)
|-|+ |.|||+.+|+.++ +++|..+|+.+|++.... |+ ..++|+..+-+||+|+|+++|.|+||++-|+|..-+
T Consensus 105 ~~P~-~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~----p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 105 MAPH-PSRDFVVLRSWRTDLPKGACSLVSVSVEHEEA----PL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred CCCC-CCCEEEEEEEEEEeCCCCcEEEEEecCCCCcC----CC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 3454 9999999999765 579999999999986432 22 378999999999999999999999999999987544
Q ss_pred Cccc
Q 008019 85 SVPE 88 (581)
Q Consensus 85 ~v~~ 88 (581)
+|.
T Consensus 179 -~P~ 181 (205)
T cd08909 179 -SPE 181 (205)
T ss_pred -ChH
Confidence 553
No 11
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=98.07 E-value=3.3e-05 Score=64.08 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=83.1
Q ss_pred CCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEE
Q 008019 474 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 553 (581)
Q Consensus 474 p~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~i 553 (581)
|.+|+.++. +=.+.|+|.+++++|+++-+|+.+.+...-..+..+++..+.+.++.++|-...+.=.-..+.|+++++
T Consensus 1 p~~i~i~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 78 (104)
T PF13426_consen 1 PDGIFILDP--DGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWV 78 (104)
T ss_dssp -SEEEEEET--TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEE
T ss_pred CEEEEEECC--cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEE
Confidence 677777776 678999999999999999999999999888887777788888888888777677677777899999887
Q ss_pred eeeEEeEeecCCCceEEEEEeecc
Q 008019 554 ERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 554 e~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+-.+.|++|+..+..+++.|
T Consensus 79 -~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 79 -EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp -EEEEEEEEETTSSEEEEEEEEEE
T ss_pred -EEEEEEEECCCCCEEEEEEEEEE
Confidence 56888999999999998888765
No 12
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.05 E-value=2.5e-05 Score=89.27 Aligned_cols=97 Identities=29% Similarity=0.456 Sum_probs=74.5
Q ss_pred cCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--C--CceEEEEEEeeeccC
Q 008019 8 TLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--G--GGSIIHIVDHMDLEP 83 (581)
Q Consensus 8 pLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--n--G~SkVtwVeH~e~d~ 83 (581)
..+-+|||+++||-+..+||+++|+=+|+.- |.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+|+.-
T Consensus 287 ~~ispRDFV~~Rywrr~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkG 362 (719)
T PLN00188 287 MFVWPRDLCYVRYWRRNDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKG 362 (719)
T ss_pred CccCcceeEEEEEEEEcCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCc
Confidence 5677899999999999999999999999874 4455667899999999999999964 3 379999999999999
Q ss_pred CCcccccccccchhHHHHHHHHHHHHH
Q 008019 84 WSVPEVLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 84 ~~v~~l~RpL~~Sg~afga~rw~aaLR 110 (581)
|.. -|+|-..-...+.-=.=+|+||
T Consensus 363 W~~--~y~~s~~~~~~l~mL~~VAgLr 387 (719)
T PLN00188 363 WGV--GYIPSFQQHCLLQMLNSVAGLR 387 (719)
T ss_pred ccc--ccCccccccchHHHHHHHHHHH
Confidence 975 3344433333333333344454
No 13
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.04 E-value=4.2e-05 Score=75.84 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=75.4
Q ss_pred cccc--CccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCC--CceEEEEEEeee
Q 008019 5 APTT--LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEG--GGSIIHIVDHMD 80 (581)
Q Consensus 5 ~~Sp--Lvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~n--G~SkVtwVeH~e 80 (581)
+|.| +|..|||..+|+.++.+++. +++..|.+. +..|+...++|++..++|++|+|+++ |.|+|+|+-|+|
T Consensus 103 ~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~D 177 (209)
T cd08905 103 AETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSID 177 (209)
T ss_pred ccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeec
Confidence 4544 79999999999999886554 566677543 33556678999999999999999988 999999999999
Q ss_pred ccCCCcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 81 LEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 81 ~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
..-+ +|. .|++..++=+.--++..|| +++
T Consensus 178 pkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 178 LKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred CCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 8766 663 4555555556666777774 443
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.04 E-value=4.1e-05 Score=75.89 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=71.4
Q ss_pred CccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--CCceEEEEEEeeeccCCCc
Q 008019 9 LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSV 86 (581)
Q Consensus 9 Lvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--nG~SkVtwVeH~e~d~~~v 86 (581)
++.+|||..+|+.++.+||.++|.-.|... |..|+.+.|+|+++.|+|++|.+.+ ++.|+|+|+-|+|.. ..+
T Consensus 107 ~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~i 181 (208)
T cd08903 107 IISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYL 181 (208)
T ss_pred CcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCc
Confidence 699999999999999999998877777653 4456667899999999999999995 458999999888875 346
Q ss_pred ccccccccchhHHHHHHHHHHHHH
Q 008019 87 PEVLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 87 ~~l~RpL~~Sg~afga~rw~aaLR 110 (581)
| +.++++.++=+..-++..||
T Consensus 182 P---~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 182 P---QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred C---HHHHHHHhhHHHHHHHHHHH
Confidence 6 34554333334445556664
No 15
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.97 E-value=6.3e-05 Score=74.82 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=72.0
Q ss_pred CccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeec--CCCceEEEEEEeeeccCCCc
Q 008019 9 LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPC--EGGGSIIHIVDHMDLEPWSV 86 (581)
Q Consensus 9 Lvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~--~nG~SkVtwVeH~e~d~~~v 86 (581)
.+..|||-.+|+.++.+++ ++++-.|++. +..|+...++|++..++|++|++. .+|.|+|||+-|+|..- .+
T Consensus 109 pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~----~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~l 182 (209)
T cd08906 109 VVSPRDFVNVRRIERRRDR-YVSAGISTTH----SHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RL 182 (209)
T ss_pred CCCCCceEEEEEEEecCCc-EEEEEEEEec----CCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CC
Confidence 5899999999999998888 5777788864 235566789999999999999985 57799999999998765 46
Q ss_pred ccccccccchhHHHHHHHHHHHHH
Q 008019 87 PEVLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 87 ~~l~RpL~~Sg~afga~rw~aaLR 110 (581)
| +.+++..+.=..--++..||
T Consensus 183 P---~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 183 P---RYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred C---HHHHHHHHHHHHHHHHHHHH
Confidence 5 35565555445555666664
No 16
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=97.92 E-value=4.3e-05 Score=75.10 Aligned_cols=79 Identities=35% Similarity=0.539 Sum_probs=62.6
Q ss_pred ccccCccCceeEEEEeeee-ecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccC
Q 008019 5 APTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEP 83 (581)
Q Consensus 5 ~~SpLvp~Ref~fLRYc~~-le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~ 83 (581)
.|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .++|++.+++|++|+|.++|.|+||++-|+|..-
T Consensus 96 ~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G 169 (197)
T cd08869 96 SMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG 169 (197)
T ss_pred CCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC
Confidence 3445 69999999998875 67889999999986321 1222 7899999999999999999999999999998643
Q ss_pred CCccccc
Q 008019 84 WSVPEVL 90 (581)
Q Consensus 84 ~~v~~l~ 90 (581)
.+|.-|
T Consensus 170 -~iP~wl 175 (197)
T cd08869 170 -RSPEWY 175 (197)
T ss_pred -CCCcee
Confidence 466433
No 17
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.88 E-value=5.4e-05 Score=75.40 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=61.3
Q ss_pred cCccCceeEEEEeee-eecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCc
Q 008019 8 TLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 86 (581)
Q Consensus 8 pLvp~Ref~fLRYc~-~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v 86 (581)
+..|+|||.+||.-+ .++.|.-+|+.+|++-.. .|+... +|+--+-|||||+|++.|.|+||-+-|+|..-+ .
T Consensus 106 ~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~-~ 179 (205)
T cd08907 106 APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR-S 179 (205)
T ss_pred CCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC-C
Confidence 568999999999864 467889999999998643 233334 999999999999999999999999999987644 4
Q ss_pred c
Q 008019 87 P 87 (581)
Q Consensus 87 ~ 87 (581)
|
T Consensus 180 P 180 (205)
T cd08907 180 P 180 (205)
T ss_pred c
Confidence 4
No 18
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=97.74 E-value=0.00012 Score=72.88 Aligned_cols=82 Identities=23% Similarity=0.391 Sum_probs=64.4
Q ss_pred cccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCC--ceEEEEEEeeeccC
Q 008019 6 PTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG--GSIIHIVDHMDLEP 83 (581)
Q Consensus 6 ~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG--~SkVtwVeH~e~d~ 83 (581)
+-+++.+|||.-+||+++.+||. +.|=+|++.- ..|+ .|+|++..|+||+++|.+|| .|+.||+-++|+.-
T Consensus 103 ~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG 175 (202)
T cd08902 103 LLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRG 175 (202)
T ss_pred CcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeecccccEEEEEECCCCCCceEEEEEEEecCCC
Confidence 44689999999999999999998 7777887642 2232 89999999999999999998 57778999988875
Q ss_pred CCcccccccccchhH
Q 008019 84 WSVPEVLRPLYESST 98 (581)
Q Consensus 84 ~~v~~l~RpL~~Sg~ 98 (581)
| +| +-++++.+
T Consensus 176 ~-LP---qsiIdq~~ 186 (202)
T cd08902 176 M-LP---QSAVDTAM 186 (202)
T ss_pred C-cc---HHHHHHHh
Confidence 5 44 34554433
No 19
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.66 E-value=0.00037 Score=69.43 Aligned_cols=77 Identities=30% Similarity=0.424 Sum_probs=59.3
Q ss_pred cccC-c--cCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCC-CcceeeecCCceeEeec---CCCceEEEEEEe
Q 008019 6 PTTL-A--PARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAP-HFVRAEMLPSGYLIRPC---EGGGSIIHIVDH 78 (581)
Q Consensus 6 ~SpL-v--p~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~-~~~r~~~lPSGcLIq~~---~nG~SkVtwVeH 78 (581)
++|+ + +.|||..+|-....+++. +|.=.|++. |..|+.. .++|.+.+++|++|+|+ ++|.|+||.+-|
T Consensus 98 ~~Pwp~~~~~RDfV~l~~~~~~~~~~-vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q 172 (205)
T cd08874 98 ETPLCLLKQPRDFCCLQVEAKEGELS-VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQ 172 (205)
T ss_pred cCCCCCCCCCCeEEEEEEEEECCCcE-EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEE
Confidence 4454 4 899999999554544444 466677764 3345454 79999999999999999 999999999999
Q ss_pred eeccCCCcc
Q 008019 79 MDLEPWSVP 87 (581)
Q Consensus 79 ~e~d~~~v~ 87 (581)
+|.--..+|
T Consensus 173 ~DPggg~iP 181 (205)
T cd08874 173 VALCGPDVP 181 (205)
T ss_pred ECCCCCCCC
Confidence 998755677
No 20
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.63 E-value=0.00022 Score=71.13 Aligned_cols=76 Identities=33% Similarity=0.517 Sum_probs=61.5
Q ss_pred ccccCccCceeEEEEeee-eecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccC
Q 008019 5 APTTLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEP 83 (581)
Q Consensus 5 ~~SpLvp~Ref~fLRYc~-~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~ 83 (581)
.|-| +|.|||.++|-.+ +.++|..+|+-.|++-. ..|. .++|++.+-+|++|+|+++|.|+||.+-|+|-.-
T Consensus 104 ~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~----~~P~--~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG 176 (204)
T cd08908 104 SMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHD----RAPV--AGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRG 176 (204)
T ss_pred CCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcc----cCCc--CceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCC
Confidence 5667 7999999997665 47899999999998753 2232 2689999999999999999999999999998542
Q ss_pred CCccc
Q 008019 84 WSVPE 88 (581)
Q Consensus 84 ~~v~~ 88 (581)
.+|.
T Consensus 177 -~iP~ 180 (204)
T cd08908 177 -HMPE 180 (204)
T ss_pred -CCcH
Confidence 4663
No 21
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=97.26 E-value=0.0044 Score=52.17 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=81.1
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
.++.+. ++|.+|+.-+ .+=.+.|.|+++.+||+++-+++.+-+.-.-..+.++.+....+.+...++--..-.=+++
T Consensus 2 ~~~~i~~~~~~~i~~~d--~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T PF00989_consen 2 RYRAILENSPDGIFVID--EDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRF 79 (113)
T ss_dssp HHHHHHHCSSSEEEEEE--TTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEE
T ss_pred HHHHHHhcCCceEEEEe--CcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEE
Confidence 346666 4899988888 6789999999999999999999999888877777766677777778777776555445555
Q ss_pred cc-CCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 545 SS-MGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 545 Ss-~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
.. .|+.+.++ ..+=.+.|.+|+..|.-.+|.
T Consensus 80 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 80 RLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 55 88888774 244455688888877776664
No 22
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.19 E-value=0.0023 Score=63.60 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=75.4
Q ss_pred cccccCccCceeEEEEeeee-ecCC--eEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeee
Q 008019 4 YAPTTLAPARDFWLLRYTSV-LEDG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 80 (581)
Q Consensus 4 ~~~SpLvp~Ref~fLRYc~~-le~G--~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e 80 (581)
-.|-| +..|||.++|-... -.+| .|+|+..|.+- |..|....++|+++.-+|++|++..++.|+|+++-|.|
T Consensus 101 k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~D 175 (207)
T cd08910 101 KYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDN 175 (207)
T ss_pred EcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeC
Confidence 35667 89999999964443 3344 68888887653 34455568999999999999999988999999999998
Q ss_pred ccCCCcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 81 LEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 81 ~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
-. ..+|. -+++.-..-+...|+..|| .|+
T Consensus 176 Pg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 176 PG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred CC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 53 35652 3565566667788888885 665
No 23
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.95 E-value=0.0084 Score=59.36 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=72.5
Q ss_pred ccccCccCceeEEE-Eeeeee-cCCeEEEEEeecCCCCC-----CCCCCCCC-CcceeeecCCceeEeecCCCceEEEEE
Q 008019 5 APTTLAPARDFWLL-RYTSVL-EDGSLVVCERSLNNTQN-----GPSMPQAP-HFVRAEMLPSGYLIRPCEGGGSIIHIV 76 (581)
Q Consensus 5 ~~SpLvp~Ref~fL-RYc~~l-e~G~wvV~DvSld~~~~-----~~~~~~~~-~~~r~~~lPSGcLIq~~~nG~SkVtwV 76 (581)
+|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|... .++|.+...+|++|+|+++|.|+|+++
T Consensus 100 ~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~ 178 (215)
T cd08877 100 LPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFV 178 (215)
T ss_pred CceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEE
Confidence 3445 888999975 556667 89999999999985321 11134445 789999999999999999999999999
Q ss_pred EeeeccCCCcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 77 DHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 77 eH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
-|+|-.-+-+|.= |++...--..+..+..|| .|+
T Consensus 179 ~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 179 ANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred EEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 9976333327743 333333334445555553 443
No 24
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.87 E-value=0.004 Score=63.56 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=57.7
Q ss_pred ccc-CccCceeEEEEeeeee-cC-CeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeee
Q 008019 6 PTT-LAPARDFWLLRYTSVL-ED-GSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 80 (581)
Q Consensus 6 ~Sp-Lvp~Ref~fLRYc~~l-e~-G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e 80 (581)
++| -+.+|||.++|+.++. ++ +..+|.=.|+.- +..|+.+.|+|++.+=.|++|++.++|.|+||.+-|+|
T Consensus 130 p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 130 PSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 444 3789999999999984 44 338887777652 23556678999999999999999999999999999986
No 25
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.73 E-value=0.013 Score=49.07 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=80.6
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 551 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf 551 (581)
+.|++|+.-+ +|=.+.|+|+++.++|+.+-+++++.+...-..+..+++.+..+.++.+.|-.....-+... .|+..
T Consensus 3 ~~p~~i~v~D--~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
T PF08448_consen 3 SSPDGIFVID--PDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEER 79 (110)
T ss_dssp HCSSEEEEEE--TTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEE
T ss_pred CCCceeEEEC--CCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcE
Confidence 3677777764 47789999999999999999999999999878888999999999999999865553333333 56655
Q ss_pred EEeeeEEeEeecCCCceEEEEEeeccc
Q 008019 552 SYERAVAWKVLNEEENAHCICFMFINW 578 (581)
Q Consensus 552 ~ie~a~vW~v~D~~g~~~GqAa~F~~W 578 (581)
++ +..+=-+.|++|+..|...++.|-
T Consensus 80 ~~-~~~~~Pi~~~~g~~~g~~~~~~Di 105 (110)
T PF08448_consen 80 WF-EVSISPIFDEDGEVVGVLVIIRDI 105 (110)
T ss_dssp EE-EEEEEEEECTTTCEEEEEEEEEEE
T ss_pred EE-EEEEEEeEcCCCCEEEEEEEEEEC
Confidence 55 445566679999999988887664
No 26
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.67 E-value=0.086 Score=52.48 Aligned_cols=66 Identities=21% Similarity=0.455 Sum_probs=46.0
Q ss_pred HHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--
Q 008019 143 RGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE-- 220 (581)
Q Consensus 143 ~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd-- 220 (581)
..|..-+ ...++|..... .++|+|..++.. ++.+...++...++.+||+.+|++|.|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~-----------------~~~~~~~k~~~~~~~~s~e~~~~~l~D~~ 71 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPE-----------------NSSIKMIKVSAIFPDVPAETLYDVLHDPE 71 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCC-----------------CCceEEEEEEEEeCCCCHHHHHHHHHChh
Confidence 3444433 23568996643 457999988874 123445566666657999999999997
Q ss_pred hchhhhhcc
Q 008019 221 HRSEWADSS 229 (581)
Q Consensus 221 ~RseWd~l~ 229 (581)
.|.+||...
T Consensus 72 ~r~~Wd~~~ 80 (222)
T cd08871 72 YRKTWDSNM 80 (222)
T ss_pred hhhhhhhhh
Confidence 999999864
No 27
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.58 E-value=0.021 Score=55.06 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=64.1
Q ss_pred ccCceeEEEEeeeee-cCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCccc
Q 008019 10 APARDFWLLRYTSVL-EDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 88 (581)
Q Consensus 10 vp~Ref~fLRYc~~l-e~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v~~ 88 (581)
+..|||.+.|..... ++|..+|.=.|.+.. .|....++|++.+.+|+.|++.++|.|+|+++-|++..-+-..-
T Consensus 99 vs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~ 173 (195)
T cd08876 99 VKDRDMVLRSTTEQDADDGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGW 173 (195)
T ss_pred cCCceEEEEEEEEEcCCCCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHH
Confidence 678999987654433 367777766665532 22234789999999999999999999999999999987543333
Q ss_pred ccccccchhHHHHHHHHHHHHH
Q 008019 89 VLRPLYESSTLIAQKTTMAALR 110 (581)
Q Consensus 89 l~RpL~~Sg~afga~rw~aaLR 110 (581)
+.+.+. -=+....+.+||
T Consensus 174 lv~~~~----~~~~~~~l~~l~ 191 (195)
T cd08876 174 LANAFA----KDAPYNTLENLR 191 (195)
T ss_pred HHHHHH----HHHHHHHHHHHH
Confidence 333332 224556777774
No 28
>PRK13557 histidine kinase; Provisional
Probab=96.57 E-value=0.019 Score=62.08 Aligned_cols=112 Identities=10% Similarity=-0.001 Sum_probs=80.2
Q ss_pred hHHHHHHhc-CCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 008019 464 ESILKTLWH-HSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 541 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 541 (581)
+..++.+.+ .|.+|+-.+.. .|-.+.|+|+++.++|+|+.+|+.+.+...-..+...++....+.+....|-.....-
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEI 108 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEE
Confidence 355666664 78888877754 4778999999999999999999999998766655555555555555555554333333
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 542 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 542 vRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
.+..+.|+.++++ ..+-.+.|++|...|...+..
T Consensus 109 ~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 109 LNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 4567899999875 455668899998887766543
No 29
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=96.24 E-value=0.019 Score=58.39 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=64.2
Q ss_pred ccccCccCceeEEEEeeeeecC-------CeEEEEEeecCCCCCCCCCCCCCCcceeee---cCCceeEee------c--
Q 008019 5 APTTLAPARDFWLLRYTSVLED-------GSLVVCERSLNNTQNGPSMPQAPHFVRAEM---LPSGYLIRP------C-- 66 (581)
Q Consensus 5 ~~SpLvp~Ref~fLRYc~~le~-------G~wvV~DvSld~~~~~~~~~~~~~~~r~~~---lPSGcLIq~------~-- 66 (581)
.|=| +..|||.++|+.++.++ +.|+||-.|++- +..|+...++|++. +=.|.+|.+ +
T Consensus 107 ~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~ 181 (235)
T cd08872 107 RVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR 181 (235)
T ss_pred CCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC
Confidence 4556 58899999999999877 789999999874 33455568899886 333433333 1
Q ss_pred CCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH
Q 008019 67 EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL 109 (581)
Q Consensus 67 ~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL 109 (581)
+||.|+||++-|+|-.-+ +|. .+++.....++-.++.-|
T Consensus 182 ~~~~~~ity~~~~dPgG~-iP~---wvvn~~~k~~~P~~l~~~ 220 (235)
T cd08872 182 DNILCKITYVANVNPGGW-APA---SVLRAVYKREYPKFLKRF 220 (235)
T ss_pred CCCeEEEEEEEEeCCCCC-ccH---HHHHHHHHhhchHHHHHH
Confidence 588999999999975444 441 334333344444444444
No 30
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.19 E-value=0.024 Score=57.98 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=60.0
Q ss_pred CccCceeEEEEeeeeec-CC-eEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCc
Q 008019 9 LAPARDFWLLRYTSVLE-DG-SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 86 (581)
Q Consensus 9 Lvp~Ref~fLRYc~~le-~G-~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v 86 (581)
-+..|||-.++...+.+ +| .++|+=.|+.- |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+
T Consensus 139 pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~L 212 (240)
T cd08913 139 HGKPQDFVILASRRKPCDNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVL 212 (240)
T ss_pred CCCCCeEEEEEEEEeccCCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--Cccc
Confidence 57899999999886654 44 57777666653 33566778999999999999999999999999999998 3366
Q ss_pred cccc
Q 008019 87 PEVL 90 (581)
Q Consensus 87 ~~l~ 90 (581)
|...
T Consensus 213 P~~~ 216 (240)
T cd08913 213 PYIS 216 (240)
T ss_pred cHHH
Confidence 6443
No 31
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.17 E-value=0.51 Score=46.48 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=44.4
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhhhchhhhhcc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSS 229 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l~ 229 (581)
..++|.... ..++|+|.+|+.++ +. .+..-++.+-+ +.+|+.|++.|.|.|.+||...
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~-----------~~-----~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~~ 74 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD-----------GH-----PLRLWRASTEV-EAPPEEVLQRILRERHLWDDDL 74 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC-----------CC-----cEEEEEEEEEe-CCCHHHHHHHHHHHHhccchhh
Confidence 468998643 35689999999741 11 24555888889 7999999999999999999763
No 32
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.11 E-value=0.022 Score=58.23 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=63.5
Q ss_pred ccCceeEEEEeeeeec-CCe-EEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCcc
Q 008019 10 APARDFWLLRYTSVLE-DGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVP 87 (581)
Q Consensus 10 vp~Ref~fLRYc~~le-~G~-wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v~ 87 (581)
+..|||-++|=..+.. +|. ++|.=.|+.. +..|+...++|++.+=+|++|++.++|.|+||.+-|+| +..+|
T Consensus 136 vk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp 209 (236)
T cd08914 136 DKPKDLVVLVSRRKPLKDGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILP 209 (236)
T ss_pred CCCceEEEEEEEEecCCCCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccch
Confidence 4889999987776655 886 8888888764 34566678999999999999999999999999999995 56676
Q ss_pred ccccccc
Q 008019 88 EVLRPLY 94 (581)
Q Consensus 88 ~l~RpL~ 94 (581)
...-.+-
T Consensus 210 ~~~~n~~ 216 (236)
T cd08914 210 YFAGNLG 216 (236)
T ss_pred heEEecc
Confidence 5544443
No 33
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.04 E-value=0.059 Score=53.37 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=79.3
Q ss_pred cccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeec--CCCceEEEEEEeeec
Q 008019 4 YAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPC--EGGGSIIHIVDHMDL 81 (581)
Q Consensus 4 ~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~--~nG~SkVtwVeH~e~ 81 (581)
-+|-|+ -.|||...|=..+..+|..+|+=.|++. |..|.. .++|.+..=||++|++. .+|.++++++-|.+-
T Consensus 105 ~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp 178 (209)
T cd08870 105 KFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP 178 (209)
T ss_pred ECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC
Confidence 345555 8999999987777778999888877764 334444 78999999999999999 789999999999973
Q ss_pred cCCCcccccccccchhHHHHHHHHHHHHH-hhhc
Q 008019 82 EPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQ 114 (581)
Q Consensus 82 d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~er 114 (581)
...+| .-|++.....|...++..|| .|++
T Consensus 179 -~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 179 -DGGIP---RELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred -CCCCC---HHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 33577 35777778888889999995 6753
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.87 E-value=0.56 Score=46.97 Aligned_cols=175 Identities=17% Similarity=0.258 Sum_probs=102.5
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhccc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSI 230 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~ 230 (581)
..++|.... ..+++.|..+++.+ . .|= --++..-+ |.+|+.||+||.+ +|.+||-...
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~---~------------~gk--l~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~~~ 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRK---Y------------HGN--LYRVEGII-PESPAKLIQFMYQPEHRIKWDKSLQ 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCC---C------------Cce--EEEEEEEe-cCCHHHHHHHHhccchhhhhccccc
Confidence 348999763 33789999998752 1 121 23556667 7999999999997 9999998531
Q ss_pred chhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCcee
Q 008019 231 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 310 (581)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s 310 (581)
. .+.+-+| +...+|...+..+. . -.-+-+||.+.+|-.--.| | +.
T Consensus 80 ---------------------~--~~iie~I----d~~T~I~~~~~~~~-~--~~~vspRDfV~vr~~~r~~----~-~~ 124 (204)
T cd08904 80 ---------------------V--YKMLQRI----DSDTFICHTITQSF-A--MGSISPRDFVDLVHIKRYE----G-NM 124 (204)
T ss_pred ---------------------c--eeeEEEe----CCCcEEEEEecccc-c--CCcccCceEEEEEEEEEeC----C-CE
Confidence 1 2344444 55556666554321 1 1125567888887732223 2 12
Q ss_pred EEE-EeeccCC----CCCCC--ccccCCcEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCeeEEEe
Q 008019 311 ELV-FAPIDAS----FSDDA--PIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIA 383 (581)
Q Consensus 311 ~vV-yAPVD~~----ds~~v--pLLPSGF~IlPd~~~~dg~~~~~tldlas~le~gs~~~~~~g~~~~~~~~~gSlLTva 383 (581)
+++ +.-|+-+ .+..| -..|+||.|.|+.+ + .++|.||.-
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----------------------------~------p~~t~l~~~ 170 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----------------------------N------PAYSKLVMF 170 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----------------------------C------CCceEEEEE
Confidence 333 3333332 23333 27899999999621 0 246899999
Q ss_pred eeccccccchhhHHHHHhhhhhHHHHHHHHHHHhc
Q 008019 384 FQFAFEMHLQENVASMARQYVRGIIASVQRVALAL 418 (581)
Q Consensus 384 FQil~~s~~~~sVa~~a~~~V~~vvstVqrIk~AL 418 (581)
+|+=......-+|...+. -.++++.....|.||
T Consensus 171 ~~~DlkG~lP~~vv~~~~--~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSVIEKTM--PTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHHHHHHh--HHHHHHHHHHHHHhc
Confidence 997666544333322211 124555666666665
No 35
>PRK13559 hypothetical protein; Provisional
Probab=95.54 E-value=0.1 Score=54.20 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=78.6
Q ss_pred hhHHHHHHh-cCCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCC
Q 008019 463 NESILKTLW-HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 540 (581)
Q Consensus 463 ~~~~~~~L~-~ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 540 (581)
.+..++.++ +.|.+|+-.+.+ .+-.+.|.|.++.+||+++.+++.+.+.+.-..+....+....+.++.+.|-.....
T Consensus 41 ~~~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (361)
T PRK13559 41 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVE 120 (361)
T ss_pred hhhHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEE
Confidence 345667777 488998888865 467899999999999999999999988765444444444455556666665544334
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 541 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 541 GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
-.+..+.|+.|+++- .+=-+.|++|...|...++.+
T Consensus 121 ~~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 121 LLNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 455678888887643 222356888888776655543
No 36
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.44 E-value=0.13 Score=51.02 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=71.5
Q ss_pred cccccCccCceeEEEEeeeeec-CCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeec---CCCceEEEEEEee
Q 008019 4 YAPTTLAPARDFWLLRYTSVLE-DGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPC---EGGGSIIHIVDHM 79 (581)
Q Consensus 4 ~~~SpLvp~Ref~fLRYc~~le-~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~---~nG~SkVtwVeH~ 79 (581)
-.|-|+ -.||+.+.|-..+.+ +|.++|+-.|++. |..|....++|.....+|++|++. ++++|+|+++-|.
T Consensus 100 ~~P~P~-s~RD~V~~r~~~~~~~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~ 174 (207)
T cd08911 100 QWPKPF-ANRDYVYVRRYIIDEENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD 174 (207)
T ss_pred ECCCCC-CCccEEEEEEEEEcCCCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe
Confidence 356664 899999998876665 5677888888873 234455689999999999999999 4678999988885
Q ss_pred eccCC-CcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 80 DLEPW-SVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 80 e~d~~-~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
|+. .+|. -+++.-..-+.-.|+.-|+ .|.
T Consensus 175 --dPgG~IP~---~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 175 --NPGVNIPS---YITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred --CCCCccCH---HHHHHHHHhhccHHHHHHHHHHh
Confidence 665 5773 2344444445566777774 454
No 37
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.82 E-value=3.3 Score=41.81 Aligned_cols=58 Identities=28% Similarity=0.474 Sum_probs=43.4
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhhhchhhhhc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 228 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 228 (581)
-...||.... ..++|.|.++|..+ |-| +=--+.|+=++.+|.+.|+|.|+| |..||.-
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d-----------~~~-----l~lwk~s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD-----------GHP-----LRLWKVSTEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC-----------CCc-----eEEEEEEEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5567998653 36789999998742 334 223455666789999999999999 9999976
No 38
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.72 E-value=1.6 Score=43.22 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhH
Q 008019 134 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 213 (581)
Q Consensus 134 l~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~ 213 (581)
|++.|. +++.|...+.. .++|..... .++|+|..|..+ +|.+++-++-..+ +.|+..
T Consensus 4 ~~~~~~-~~~~~~~~l~~--~~~W~~~~~--~~~i~v~~r~~~-----------------~~~~~~~k~e~~i-~~~~~~ 60 (215)
T cd08877 4 IRQEAT-IMQENLKDLDE--SDGWTLQKE--SEGIRVYYKFEP-----------------DGSLLSLRMEGEI-DGPLFN 60 (215)
T ss_pred HHHHHH-HHHHHHhcccC--CCCcEEecc--CCCeEEEEEeCC-----------------CCCEEEEEEEEEe-cCChhH
Confidence 344443 34455556655 778997642 468999999984 2348999999999 789999
Q ss_pred HHHHHhh--hchhhhhcc
Q 008019 214 LLRFLRE--HRSEWADSS 229 (581)
Q Consensus 214 lf~FLRd--~RseWd~l~ 229 (581)
++..|+| .+.+|+-.+
T Consensus 61 ~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 61 LLALLNEVELYKTWVPFC 78 (215)
T ss_pred eEEEEehhhhHhhhcccc
Confidence 9999997 999999874
No 39
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.58 E-value=1.4 Score=43.41 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=40.9
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHh-h--hchhhhhc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLR-E--HRSEWADS 228 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLR-d--~RseWd~l 228 (581)
-.+.+|.... +..++|.|.+|..+ + .| -..++...+ ++||+.||++|- | .|.+||..
T Consensus 21 ~~~~~W~l~~-~~~~~i~i~~r~~~----~------------~~--~~~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 21 LTDPGWKLEK-NTTWGDVVYSRNVP----G------------VG--KVFRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred hcCCCceEEE-ecCCCCEEEEEEcC----C------------Cc--eEEEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 4455998653 33348999999873 1 13 235556677 899999998765 4 99999987
Q ss_pred c
Q 008019 229 S 229 (581)
Q Consensus 229 ~ 229 (581)
.
T Consensus 81 ~ 81 (208)
T cd08868 81 V 81 (208)
T ss_pred c
Confidence 4
No 40
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=94.52 E-value=0.69 Score=35.57 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=65.2
Q ss_pred HHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
.++.+++ .|..++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-.++
T Consensus 4 ~~~~~~~~~~~~~~~~d~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR00229 4 RYRAIFESSPDAIIVIDL--EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRV 81 (124)
T ss_pred HHHHHHhhCCceEEEEcC--CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeee
Confidence 3455664 6777766553 557899999999999999999988877665555554444455555555332222223343
Q ss_pred -ccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 545 -SSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 545 -Ss~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
...|+.+++.- ..-.+. ++|...+...++.
T Consensus 82 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 112 (124)
T TIGR00229 82 RRKDGSEIWVEV-SVSPIR-TNGGELGVVGIVR 112 (124)
T ss_pred EcCCCCEEEEEE-EEeehh-hCCCeeEEEEEee
Confidence 56666555432 222233 5676666665554
No 41
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.30 E-value=4.1 Score=39.19 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=45.2
Q ss_pred ccC-CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhh
Q 008019 149 LNG-FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEW 225 (581)
Q Consensus 149 v~~-s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseW 225 (581)
.++ +++-+|..... .++|+|..++.. + +.+..-+++..+ +.||+.+++++.| +|.+|
T Consensus 10 ~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w 69 (195)
T cd08876 10 GAALAPDGDWQLVKD--KDGIKVYTRDVE----G-------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQW 69 (195)
T ss_pred ccccCCCCCCEEEec--CCCeEEEEEECC----C-------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHH
Confidence 344 44545997653 468999998873 1 224556777889 7999999999997 99999
Q ss_pred hhcc
Q 008019 226 ADSS 229 (581)
Q Consensus 226 d~l~ 229 (581)
|...
T Consensus 70 ~~~~ 73 (195)
T cd08876 70 MPNC 73 (195)
T ss_pred Hhhc
Confidence 9864
No 42
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.09 E-value=4.7 Score=37.73 Aligned_cols=127 Identities=21% Similarity=0.299 Sum_probs=74.2
Q ss_pred CCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcccch
Q 008019 155 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSIDA 232 (581)
Q Consensus 155 ~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~~~ 232 (581)
++|...... ++|+|..++..+ ..+...++..-+ +.|+..++++|.| .|.+||....+
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~-----------------~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~~- 73 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYED-----------------SGLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFEE- 73 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCC-----------------CCceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcceE-
Confidence 589977543 379998877641 123455667777 6899999999995 99999965321
Q ss_pred hhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCceeEE
Q 008019 233 YSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAEL 312 (581)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s~v 312 (581)
...+..+.. +..|--.+....- .+-+|+++++..+ ..++ .| .-++
T Consensus 74 ----------------------~~vl~~~~~----~~~i~~~~~~~p~-----p~~~Rdfv~~~~~-~~~~--~~-~~~~ 118 (193)
T cd00177 74 ----------------------FEVIEEIDE----HTDIIYYKTKPPW-----PVSPRDFVYLRRR-RKLD--DG-TYVI 118 (193)
T ss_pred ----------------------EEEEEEeCC----CeEEEEEEeeCCC-----ccCCccEEEEEEE-EEcC--CC-eEEE
Confidence 223333322 1233333333211 1446789998874 4452 34 3567
Q ss_pred EEeeccCC-CC---CC--CccccCCcEEecC
Q 008019 313 VFAPIDAS-FS---DD--APIIPSGFRIIPL 337 (581)
Q Consensus 313 VyAPVD~~-ds---~~--vpLLPSGF~IlPd 337 (581)
+.-+||.+ .| +. ..++++||.|-|.
T Consensus 119 ~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~ 149 (193)
T cd00177 119 VSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL 149 (193)
T ss_pred EEeecCCCCCCCCCCcEEEEEEccEEEEEEC
Confidence 77777764 11 22 2245666666664
No 43
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.06 E-value=0.32 Score=56.47 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=80.3
Q ss_pred HHHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
..++.++ +.|.+|+..+. +=.++|.|+++.++|+++.+++.+.+..--..+..+..-.....++.++|-...+.-..
T Consensus 155 ~~l~~il~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 232 (779)
T PRK11091 155 SLLRSFLDASPDLVYYRNE--DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWL 232 (779)
T ss_pred HHHHHHHhcCcceEEEECC--CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3455566 48999988775 66899999999999999999999987655555444444444556677777655555555
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..+.|+.++++ .....+.|++|...|.-.++.+
T Consensus 233 ~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 233 DYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 66788888774 4556678999999988777754
No 44
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=93.68 E-value=1.4 Score=31.75 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE-ccCCCcEE
Q 008019 474 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL-SSMGRPIS 552 (581)
Q Consensus 474 p~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-Ss~Grrf~ 552 (581)
|.+++..+. +-.+.|.|.++.++|+++..++.+.+...-..+..+......+.++.+.+-...+ -+++ ...|+..+
T Consensus 2 ~~~i~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (103)
T cd00130 2 PDGVIVLDL--DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTL-EVRLRRKDGSVIW 78 (103)
T ss_pred CceEEEECC--CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEE-EEEEEccCCCEEE
Confidence 344555443 4567899999999999999999887766555555554445555555543222111 2222 23355544
Q ss_pred EeeeEEeEeecCCCceEEEEEee
Q 008019 553 YERAVAWKVLNEEENAHCICFMF 575 (581)
Q Consensus 553 ie~a~vW~v~D~~g~~~GqAa~F 575 (581)
++ ..+-.+.+.+|...+...++
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 79 VL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EE-EEEEEEecCCCCEEEEEEEE
Confidence 43 22233445556666655444
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=93.59 E-value=0.3 Score=51.77 Aligned_cols=110 Identities=12% Similarity=-0.030 Sum_probs=70.8
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
+.++.+.+ +|++|..++. +..+.|.|.++.++|+++-+++.+.+...-..+....+....+.+....+-.....-.+
T Consensus 4 ~~~~~i~~~~~~~i~~~d~--~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDL--KANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLN 81 (494)
T ss_pred HHHHHHHHhCCceEEEECC--CCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeec
Confidence 45566674 8899888886 56799999999999999999999876443333333333233333333333222223334
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..+.|+.++.+ ..+-.+.|++|...|.-.++.+
T Consensus 82 ~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 82 RRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred cCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 56788887764 3444667888988876665543
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=93.39 E-value=0.57 Score=46.90 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=39.5
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 228 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 228 (581)
-..++|. +. ...++|+|.++... |.. . .+++. +-+ ++||+.|+++|.| +|.+||..
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~------------~~~--~-~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN------------GTY--H-GFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC------------CCc--c-eEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 5678994 43 33468999998752 211 2 34443 245 7999999999998 99999985
No 47
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.88 E-value=10 Score=38.28 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=36.7
Q ss_pred CCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhhhchhhhhcc
Q 008019 155 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSS 229 (581)
Q Consensus 155 ~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l~ 229 (581)
.+|..+.. .+++.+..+|..+ +-| +=--++++=+ +.||..++..+-+.|.+||.-.
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~d-----------~~~-----lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~~ 82 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVGD-----------GNP-----LRLWKVSVEV-EAPPSVVLNRVLRERHLWDEDF 82 (205)
T ss_pred cCCcccCC--cCCeEEEEecCCC-----------CCc-----eEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhhc
Confidence 47776633 5678888888631 222 3445678888 5666666555544799999763
No 48
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=92.53 E-value=6.2 Score=39.40 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHH
Q 008019 136 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 215 (581)
Q Consensus 136 ~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf 215 (581)
+.++-=.+.|..-+.. .++|..-. +..++|+|.+++.+ + .| .+-+.-+-+ +.||+.||
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~----~------------~~--~~fk~~~~v-~~~~~~l~ 65 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVP----F------------HG--KTFILKAFM-QCPAELVY 65 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccC----C------------CC--cEEEEEEEE-cCCHHHHH
Confidence 3344444455544433 46898532 23568999997763 1 12 444777888 79999998
Q ss_pred H-HHhh--hchhhhhcc
Q 008019 216 R-FLRE--HRSEWADSS 229 (581)
Q Consensus 216 ~-FLRd--~RseWd~l~ 229 (581)
+ .|.| .|.+||...
T Consensus 66 ~~ll~D~~~~~~W~~~~ 82 (209)
T cd08906 66 QEVILQPEKMVLWNKTV 82 (209)
T ss_pred HHHHhChhhccccCccc
Confidence 5 5676 999999763
No 49
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=92.05 E-value=8.7 Score=38.63 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=38.8
Q ss_pred CccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhhhchhhhhcc
Q 008019 156 GWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSS 229 (581)
Q Consensus 156 ~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l~ 229 (581)
+|..++ ..+.+.++.+|.. +|- -+.--++++-+ |.+|+.|...|-|-|.+||...
T Consensus 28 ~w~~~~--~~~~~el~~~k~~-----------~gs-----~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~~ 82 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS-----------EGP-----PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVDL 82 (204)
T ss_pred CCcccC--CCCcEEEEEeccC-----------CCC-----CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHHh
Confidence 677663 3567889999863 222 37778888889 6777777755555599999874
No 50
>PRK13558 bacterio-opsin activator; Provisional
Probab=91.99 E-value=1.2 Score=50.77 Aligned_cols=109 Identities=5% Similarity=-0.087 Sum_probs=77.3
Q ss_pred HHHh-cCCCeeeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEc
Q 008019 468 KTLW-HHSDAVLCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLS 545 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~-~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiS 545 (581)
+.++ ++|..|...+. ..+..+.|.|.+..+||+++-+++.+.+...-..+..+.++...+.+..+.|-.....--...
T Consensus 151 ~~~~~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 230 (665)
T PRK13558 151 ERALDEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYR 230 (665)
T ss_pred HHHHhcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 4455 47888877775 367889999999999999999999998877666666666666666666666543333333456
Q ss_pred cCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 546 SMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 546 s~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+.|..++++- .+=.+.|++|...|...++.+
T Consensus 231 ~dG~~~~~~~-~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 231 KDGSTFWNQV-DIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred CCCCEEEEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 7788777642 333567888998887766644
No 51
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=91.88 E-value=9.3 Score=38.03 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
-.+.+|..... .++|+|-.|..+ + .++.--++...++.++|+.++++|.| .|.+||...
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~ 82 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDE----Q-------------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV 82 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccC----C-------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 34467987644 457999888764 2 23446777888856999999999997 999999873
No 52
>PRK13560 hypothetical protein; Provisional
Probab=91.88 E-value=1.1 Score=51.17 Aligned_cols=110 Identities=7% Similarity=-0.056 Sum_probs=72.2
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
.++.++ +.|.+|+..+. |=.+.|.|+++.++|+++-+|+.+.+...-.++...+..+....+....|-...+.-...
T Consensus 205 ~l~~l~e~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 282 (807)
T PRK13560 205 FLQQLLDNIADPAFWKDE--DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQ 282 (807)
T ss_pred HHHHHHhhCCCeEEEEcC--CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEE
Confidence 345555 47888887764 568999999999999999999999887665544444444344444444443333444556
Q ss_pred ccCCCcEEEeee-EEeEeecCCCceEEEEEeecc
Q 008019 545 SSMGRPISYERA-VAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 545 Ss~Grrf~ie~a-~vW~v~D~~g~~~GqAa~F~~ 577 (581)
.+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 283 ~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 283 NKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred cCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 788888755321 122345788888877666543
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=91.62 E-value=13 Score=36.73 Aligned_cols=59 Identities=14% Similarity=0.340 Sum_probs=41.6
Q ss_pred CCCccccccCCC--cceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 154 DEGWSMLESDGI--DDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 154 ~~~W~~l~~~g~--~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
+++|.......+ .+|+|-.|+.+ + .++.--++...++++||+.|+++|.| .|.+||...
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~ 83 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-------------TGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV 83 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-------------CCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe
Confidence 378998754322 23777666653 2 12344666777767899999999997 999999874
No 54
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=91.56 E-value=0.99 Score=48.90 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=68.9
Q ss_pred HHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccC-HHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 467 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETT-LVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 467 ~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~-w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
++.+++ +|++|+..+.+ =.+.|+|.++.+||+++ -+++.+.+...-.. ....+...++..+.+.|....|...-.
T Consensus 254 ~~~l~e~~~d~I~v~D~~--G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDAD--GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATTLT 330 (442)
T ss_pred HHHHHHhCCceEEEEcCC--CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEEEE
Confidence 455664 89999988764 47999999999999997 57899987542222 223445677788888998888887778
Q ss_pred ccCCCcEEEeeeEEeEeecCC
Q 008019 545 SSMGRPISYERAVAWKVLNEE 565 (581)
Q Consensus 545 Ss~Grrf~ie~a~vW~v~D~~ 565 (581)
.+.|+.+.++ +-...+.++
T Consensus 331 ~~~G~~~~ve--~s~~~i~~~ 349 (442)
T TIGR02040 331 GEFGAQTEVE--ISAAWVDQG 349 (442)
T ss_pred cCCCCEEEEE--EEEEEeccC
Confidence 9999999996 333444433
No 55
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=91.31 E-value=1.3 Score=47.91 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
..++.+++ +|++|+..+. .+-.+.|.|.++.+||+++.+++++.+...-..+..++.....+.+..++|....+ =++
T Consensus 133 ~r~~~l~e~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~ 210 (442)
T TIGR02040 133 TRYRVVLEVSSDAVLLVDM-STGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RIL 210 (442)
T ss_pred HHHHHHHhhCCceEEEEEC-CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EEE
Confidence 34556664 6888887765 24589999999999999999999999877667777788778888888888875433 244
Q ss_pred EccCCCcE
Q 008019 544 LSSMGRPI 551 (581)
Q Consensus 544 iSs~Grrf 551 (581)
....|.++
T Consensus 211 ~~~~~~~~ 218 (442)
T TIGR02040 211 LRRSQKRL 218 (442)
T ss_pred EcCCCeEE
Confidence 44445444
No 56
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=91.04 E-value=0.37 Score=37.86 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=30.9
Q ss_pred HHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccc
Q 008019 466 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLE 512 (581)
Q Consensus 466 ~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr 512 (581)
.++.+++ .|.+|+-.+ + + +++|+|+++.+||+++ ..+.+..
T Consensus 2 ~~~~l~~~~~~~i~i~d-~-~-~i~~~N~~~~~l~g~~---~~~~~~~ 43 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID-G-G-RIIYVNPAFEELFGYS---LEGEDIG 43 (64)
T ss_dssp HHHHHHCCSSSEEEEEE-T-S-BEEEE-HHHHHHHCS----HTCCCHH
T ss_pred HHHHHHHcCccceEEEE-C-C-ChHHhhHHHHHHhCCC---CCCCCHH
Confidence 4677885 899999988 3 3 9999999999999998 5555543
No 57
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=90.55 E-value=18 Score=35.90 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=41.8
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh----hchhhhhc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE----HRSEWADS 228 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd----~RseWd~l 228 (581)
..++|.... + .++|+|.+|++.. . .|-+ -++-.-+ |++|+.+|++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~---~------------~~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAE---F------------AGNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCC---C------------CCcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567998764 3 3699999998742 1 1223 5566667 7999999999974 78999987
Q ss_pred c
Q 008019 229 S 229 (581)
Q Consensus 229 ~ 229 (581)
.
T Consensus 80 ~ 80 (208)
T cd08903 80 V 80 (208)
T ss_pred c
Confidence 4
No 58
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=90.34 E-value=14 Score=35.44 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHH
Q 008019 137 LSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLR 216 (581)
Q Consensus 137 LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~ 216 (581)
|+++....|..- .....++|.........++. +++... ++ +..+-..++..-+ +.++..+|.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~---~~-----------~~~~~~~k~~~~v-~~~~~~~~~ 63 (206)
T PF01852_consen 2 LAEELMQEELAL-AQEDEDGWKLYKDKKNGDVY--YKKVSP---SD-----------SCPIKMFKAEGVV-PASPEQVVE 63 (206)
T ss_dssp HHHHHHHHHHHH-HHHTCTTCEEEEEETTTCEE--EEEEEC---SS-----------STSCEEEEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHHH-hhcCCCCCeEeEccCCCeEE--EEEeCc---cc-----------cccceEEEEEEEE-cCChHHHHH
Confidence 455566666533 35677899988633333433 444321 10 1145667888888 788887777
Q ss_pred HHhhhchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEe
Q 008019 217 FLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQ 296 (581)
Q Consensus 217 FLRd~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQ 296 (581)
.|.+.+.+||....+ .+.+-.+. +++.|.....+..- -..+-+||..+++
T Consensus 64 ~~~~~~~~Wd~~~~~-----------------------~~~le~~~----~~~~i~~~~~~~~~---~~p~~~RDfv~~~ 113 (206)
T PF01852_consen 64 DLLDDREQWDKMCVE-----------------------AEVLEQID----EDTDIVYFVMKSPW---PGPVSPRDFVFLR 113 (206)
T ss_dssp HHHCGGGHHSTTEEE-----------------------EEEEEEEE----TTEEEEEEEEE-CT---TTTSSEEEEEEEE
T ss_pred HHHhhHhhcccchhh-----------------------heeeeecC----CCCeEEEEEecccC---CCCCCCcEEEEEE
Confidence 777644499987431 33443342 22445544444321 1134568888888
Q ss_pred eccCCCCCCCCceeEEEEeeccCCC-----CCCC--ccccCCcEEecC
Q 008019 297 LCSGVDENAVGNCAELVFAPIDASF-----SDDA--PIIPSGFRIIPL 337 (581)
Q Consensus 297 e~s~~De~a~G~~s~vVyAPVD~~d-----s~~v--pLLPSGF~IlPd 337 (581)
-.. .+ ..| .-.+++..||-+. +..| -+++|||.|-|.
T Consensus 114 ~~~-~~--~~~-~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 114 SWR-KD--EDG-TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL 157 (206)
T ss_dssp EEE-EC--TTS-EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE
T ss_pred EEE-Ee--ccc-eEEEEEeeeccccccccccCcceeeeeeEeEEEEEc
Confidence 754 33 333 2456666787652 2233 289999999995
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=89.69 E-value=5.7 Score=38.40 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=73.7
Q ss_pred CCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhH-HHHHHhh--hchhhhhccc
Q 008019 154 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI-LLRFLRE--HRSEWADSSI 230 (581)
Q Consensus 154 ~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~-lf~FLRd--~RseWd~l~~ 230 (581)
.++|..... +.+++.+..+..+ + +..+-..++...+ +.+|+. +.++|.| .|.+||....
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~----~------------~~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~ 79 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP----G------------RSPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVA 79 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC----C------------CCceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcc
Confidence 568997653 2334444444442 1 1246778888899 678875 6678887 9999998742
Q ss_pred chhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCcee
Q 008019 231 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 310 (581)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s 310 (581)
+ .+.+-.+. .++.|-....+..- ..+-.||..++.-+. .| ..| +
T Consensus 80 ~-----------------------~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~--~ 123 (206)
T smart00234 80 K-----------------------AETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDG--S 123 (206)
T ss_pred c-----------------------EEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCC--c
Confidence 1 23343342 22333333222211 124457888887753 34 333 3
Q ss_pred EEE-EeeccCC----CCCCC--ccccCCcEEecCC
Q 008019 311 ELV-FAPIDAS----FSDDA--PIIPSGFRIIPLD 338 (581)
Q Consensus 311 ~vV-yAPVD~~----ds~~v--pLLPSGF~IlPd~ 338 (581)
++| ...++-+ .+..| .++++||.|-|++
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 444 3345443 12222 4899999999973
No 60
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=89.58 E-value=15 Score=37.79 Aligned_cols=164 Identities=14% Similarity=0.169 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCC-----cceEEEEccCCCccccccccccCCCCCCCceEEEEEeeeccc
Q 008019 133 ALRALSQRLSRGFNEALNGFTDEGWSMLESDGI-----DDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQ 207 (581)
Q Consensus 133 ~l~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~-----~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~ 207 (581)
.++.||..-+..|-. +.-...--|.+..+.+. |....+..+.. + +..+ +..+..+.++-..
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~----~------~~~~--~~~~eASR~~glV- 68 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG----G------SKPG--GFTTEASRACGLV- 68 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC----C------CCCC--CCeEEEEeeeEEE-
Confidence 488999999999974 34445678998766542 22211111111 1 1112 3567888889999
Q ss_pred CCChhHHHHHHhhhchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEeccccc--CCCCceEEEEEecccccCccc
Q 008019 208 DVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHT--IEHEEFLEVIKLENMAHYRED 285 (581)
Q Consensus 208 pvpp~~lf~FLRd~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g--~~~~n~vsllr~~~~~~~~~~ 285 (581)
++.|..|++.|.| +.+|..+... .+ + ....+.-|..| .+.+..+.|+..+-+.++ -
T Consensus 69 ~m~~~~lVe~lmD-~~kW~~~Fp~-iv----~--------------~a~tl~vistg~~g~~~G~lqlmyael~~pS--p 126 (229)
T cd08875 69 MMNAIKLVEILMD-VNKWSELFPG-IV----S--------------KAKTLQVISTGNGGNRNGTLQLMYAELQVPS--P 126 (229)
T ss_pred ecCHHHHHHHHhC-hhhhhhhhhh-hc----c--------------eeeEEEEeeCCCCCCCCceehhhhhhcccCc--c
Confidence 7999999999999 3456554210 01 0 01112222222 133556888887754443 4
Q ss_pred CCCCCceEEEeeccCCCCCCCCceeEEEEe-eccCC----CCCC---CccccCCcEEecC
Q 008019 286 MIMPSDIFLLQLCSGVDENAVGNCAELVFA-PIDAS----FSDD---APIIPSGFRIIPL 337 (581)
Q Consensus 286 ~~~~~~~liLQe~s~~De~a~G~~s~vVyA-PVD~~----ds~~---vpLLPSGF~IlPd 337 (581)
-+..|+...|.-|...+ .| ..+|-- .+|-. .+.. --.+||||-|-|.
T Consensus 127 LVp~Re~~fLRyc~~l~---dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 127 LVPTREFYFLRYCKQLE---DG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred cccCCeEEEEEEEEEeC---CC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 56778999999986444 44 444422 44432 1121 2389999999985
No 61
>PRK09776 putative diguanylate cyclase; Provisional
Probab=87.33 E-value=2.8 Score=50.25 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=74.5
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC-Ce
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ-SG 541 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G 541 (581)
++.++.+++ +|..|+..+. |-.+.|.|+++.+|++++-+|+.+++...-..+.+++.....+.++...+..... .-
T Consensus 282 e~r~~~l~e~~~~~i~~~d~--dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~ 359 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVGT--EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEK 359 (1092)
T ss_pred HHHHHHHHHhCCceEEEEcC--CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeee
Confidence 455667774 8999887765 6799999999999999999999999887666666666666666666554432211 22
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEe
Q 008019 542 ICLSSMGRPISYERAVAWKVLNEEENAHCICFM 574 (581)
Q Consensus 542 vRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~ 574 (581)
....+.|+.++++-... .+.|++|...|....
T Consensus 360 ~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~ 391 (1092)
T PRK09776 360 RYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQ 391 (1092)
T ss_pred EEEcCCCCEEEEEEEEE-EEECCCCCEeeehhh
Confidence 23467788777654332 345777887765443
No 62
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=87.28 E-value=3.8 Score=47.32 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=69.1
Q ss_pred CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccc-cCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 008019 473 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKI-FDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 551 (581)
Q Consensus 473 ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~s-ae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf 551 (581)
.|.+|+..+ .+-.++|.|+++.++|+++.+++.+.+...- ..+...++....+.+..+.+-.....-....+.|+.+
T Consensus 145 ~~~~i~~~d--~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 222 (799)
T PRK11359 145 LDRPVIVLD--PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKI 222 (799)
T ss_pred CCCcEEEEc--CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEE
Confidence 566666654 4678999999999999999999999865432 2233334444455555555443333344567888888
Q ss_pred EEeeeEEeEeecCCCceEEEEEeecc
Q 008019 552 SYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 552 ~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+++ ...-.+.|++|...|...++.+
T Consensus 223 ~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 223 WIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEE-eeeeeeecCCCceeEEEEEeeh
Confidence 774 4555678888988887776654
No 63
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=86.84 E-value=6.6 Score=40.45 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=41.0
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
-..++|..-.. .++|+|.++... . +++-++=+-+ ++|++.|+++|.| .|.+||...
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s--------------~-----~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED--------------K-----FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC--------------C-----ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhhc
Confidence 45678985433 478999995431 1 1334666777 8999999999997 999999763
No 64
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=86.49 E-value=2.3 Score=43.79 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=62.3
Q ss_pred HHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEcc
Q 008019 468 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSS 546 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs 546 (581)
+.+. ..|.+|+..+. +-.++|.|++|.++|+++.+++.+.|..--..+.. .+.. .+.++.+.|-...+..+++.+
T Consensus 10 ~~il~~~~~gi~~~d~--~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (348)
T PRK11073 10 GQILNSLINSILLLDD--DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNIE-LMRESLQAGQGFTDNEVTLVI 85 (348)
T ss_pred HHHHhcCcCeEEEECC--CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhHH-HHHHHHHcCCcccccceEEEE
Confidence 4445 58999888875 67999999999999999999999998765554332 2222 334555555444556788888
Q ss_pred CCCcEEEeeeEEeEeec
Q 008019 547 MGRPISYERAVAWKVLN 563 (581)
Q Consensus 547 ~Grrf~ie~a~vW~v~D 563 (581)
.|+.++++ +.+..+.
T Consensus 86 ~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 86 DGRSHILS--LTAQRLP 100 (348)
T ss_pred CCceEEEE--EEEEEcc
Confidence 99887763 3344443
No 65
>PRK10060 RNase II stability modulator; Provisional
Probab=85.79 E-value=4.6 Score=46.78 Aligned_cols=88 Identities=5% Similarity=-0.031 Sum_probs=62.5
Q ss_pred HHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 466 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 466 ~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
.++.+++ ++.+|+..+.+ =.++|+|+++.+|++|+-+|+.+.+. .+-..+.+.+...+.+.++.+.|-.....-.-
T Consensus 112 ~~~~v~~~~~~gI~i~D~~--g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 189 (663)
T PRK10060 112 FAEQVVSEANSVIVILDSR--GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWI 189 (663)
T ss_pred HHHHHHhhCCceEEEEeCC--CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEE
Confidence 4455664 78888887664 46999999999999999999999986 44445555555566677777776543333344
Q ss_pred EccCCCcEEEee
Q 008019 544 LSSMGRPISYER 555 (581)
Q Consensus 544 iSs~Grrf~ie~ 555 (581)
..+.|+++++..
T Consensus 190 ~~~~G~~~~~~~ 201 (663)
T PRK10060 190 KTRKGQRLFLFR 201 (663)
T ss_pred EeCCCCEEEEEe
Confidence 678888877543
No 66
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=83.87 E-value=6.9 Score=32.01 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=55.9
Q ss_pred EcccHHHHHhhccCHHHhhcCc----cccccCccchhHHhhhhHH-HHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 008019 489 TFANQAGLDMLETTLVALQDIT----LEKIFDDSGRKTLCSEFPQ-IMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 563 (581)
Q Consensus 489 ~YaN~aAL~l~e~~w~el~~lp----sr~sae~~~r~er~~lL~~-v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D 563 (581)
+|.|+...+||+++-+++ +.+ +..-.-|.+|+.-.+.+.+ ..+.|-.....==.+.+.|+..+++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 777 5555568888888888888 56666444433334457888888754 4445568
Q ss_pred CCCceEEEE
Q 008019 564 EEENAHCIC 572 (581)
Q Consensus 564 ~~g~~~GqA 572 (581)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999877653
No 67
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=82.33 E-value=2 Score=44.09 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=40.5
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 228 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 228 (581)
..++|..- ...++|+|.++.+. .+++-+.=+-+ ++|++.||++|.| .|.|||..
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~s-------------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQD-------------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecCC-------------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 46789854 34568999998741 24444555557 8999999999998 99999976
No 68
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=80.49 E-value=65 Score=32.08 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHH
Q 008019 136 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 215 (581)
Q Consensus 136 ~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf 215 (581)
++++.....|-.-.+ ..++|.... .+.++++|.++..+ + .| ---+.-.-+ |+|++.|+
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~W~~~~-~~~~gi~v~s~~~~----~------------~~--k~~k~e~~i-~~~~~~l~ 65 (209)
T cd08905 8 KQGEEALQKSLSILQ--DQEGWKTEI-VAENGDKVLSKVVP----D------------IG--KVFRLEVVV-DQPLDNLY 65 (209)
T ss_pred HHHHHHHHHHHHHhc--cccCCEEEE-ecCCCCEEEEEEcC----C------------CC--cEEEEEEEe-cCCHHHHH
Confidence 444444444444432 456898652 33567788886653 1 12 344566677 89999999
Q ss_pred HHHhh---hchhhhhcc
Q 008019 216 RFLRE---HRSEWADSS 229 (581)
Q Consensus 216 ~FLRd---~RseWd~l~ 229 (581)
++|.+ .+.+|+..+
T Consensus 66 ~~l~~d~e~~~~W~~~~ 82 (209)
T cd08905 66 SELVDRMEQMGEWNPNV 82 (209)
T ss_pred HHHHhchhhhceecccc
Confidence 77773 999999874
No 69
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=80.49 E-value=16 Score=39.84 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=69.2
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
..+.++ +.|.+|+..+. +-.++|.|+++.++|+++.+++.+.+...-.++.. . ....+.++.+.|-.....-+++
T Consensus 263 ~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 338 (607)
T PRK11360 263 LNELILESIADGVIAIDR--QGKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEISF 338 (607)
T ss_pred HHHHHHHhccCeEEEEcC--CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEEEE
Confidence 345556 47899988885 55789999999999999999999988776665432 2 2334445555544333334444
Q ss_pred ccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 545 SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 545 Ss~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...++...+ ...+=.+.|++|+..|...+|.+
T Consensus 339 ~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 339 PGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 444333333 23333567889998888777754
No 70
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=80.22 E-value=12 Score=37.28 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=42.1
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
.-..+|..... .++|+|-.|... + .| +.--++...+.++|++.++++|.| .|.+||...
T Consensus 18 ~~~~~W~l~~~--~~~i~Vy~r~~~----~------------s~-~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~ 78 (207)
T cd08911 18 QEPDGWEPFIE--KKDMLVWRREHP----G------------TG-LYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA 78 (207)
T ss_pred ccCCCcEEEEE--cCceEEEEeccC----C------------CC-cEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh
Confidence 34557987644 456999888774 1 12 234556555558999999999997 999999874
No 71
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=76.50 E-value=4.1 Score=41.94 Aligned_cols=56 Identities=16% Similarity=0.387 Sum_probs=44.4
Q ss_pred CCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 152 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 152 s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
...++|..- ...++|+|-++.. +.+++-+.-+-+ ++|++.+|+.|.| .|.+||...
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~~-------------------s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLEE-------------------HDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEE--EccCCEEEEEecC-------------------CCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhh
Confidence 457899854 3456899999841 125788899989 8999999999998 999999763
No 72
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=74.35 E-value=12 Score=32.30 Aligned_cols=97 Identities=11% Similarity=-0.006 Sum_probs=62.1
Q ss_pred CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEE
Q 008019 473 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPIS 552 (581)
Q Consensus 473 ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ 552 (581)
.|.+|+-.+. +=.+.|-|++|.++|... ...++-|..--..+..++.-...++++...+- ...-+.+...||.|.
T Consensus 8 ~~~~i~~vD~--~~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 82 (106)
T PF13596_consen 8 MPIGIIFVDR--NLRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRWYL 82 (106)
T ss_dssp SSSEEEEEET--TSBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEEEE
T ss_pred CCCCEEEEcC--CCeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEEEE
Confidence 6778887776 668899999999999966 45567777665556566666677766664442 112333456676666
Q ss_pred EeeeEEeEeecCCCceEEEEEeecc
Q 008019 553 YERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 553 ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+ .+=-+.|++|++.|...+|.|
T Consensus 83 ~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 83 V---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp E---EEEEEE-TTS-EEEEEEEEEE
T ss_pred E---EEEEEECCCCCEEEEEEEEEe
Confidence 6 556677999999999999865
No 73
>PRK09776 putative diguanylate cyclase; Provisional
Probab=73.88 E-value=21 Score=43.00 Aligned_cols=107 Identities=11% Similarity=0.086 Sum_probs=69.2
Q ss_pred HHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCcc---chhHHhhhhHHHHHhccc-cCCCe
Q 008019 467 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDS---GRKTLCSEFPQIMQQGFM-CLQSG 541 (581)
Q Consensus 467 ~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~---~r~er~~lL~~v~~qG~~-~~y~G 541 (581)
.+.+.+ .|++|+..+. +=.++|.|+++.++++++-+|+.+.|...-.... ..+.... +.+..+.+-. .....
T Consensus 538 l~~~l~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 614 (1092)
T PRK09776 538 LHITLDSIGEAVVCTDM--AMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQD 614 (1092)
T ss_pred HHHHHhccccEEEEECC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccce
Confidence 344554 7889888776 4579999999999999999999998865433221 1112222 3332222211 11122
Q ss_pred -eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 542 -ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 542 -vRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
....+.|+++.++- .+-.+.|++|...|.-.++.|
T Consensus 615 ~~~~~~~G~~~~~~~-~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 615 VVLHCRSGGSYDVHY-SITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred EEEEeCCCcEEEEEE-EeeeeecCCCCEEEEEEEEEe
Confidence 34578899988864 566788999999887777654
No 74
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=73.10 E-value=14 Score=37.23 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=56.0
Q ss_pred ccccCccCceeEEEEe-eeeecC-CeEEEEEeecCCCCCCCCCC-CCCCcceeeecCCceeEeecCC---CceEEEEEEe
Q 008019 5 APTTLAPARDFWLLRY-TSVLED-GSLVVCERSLNNTQNGPSMP-QAPHFVRAEMLPSGYLIRPCEG---GGSIIHIVDH 78 (581)
Q Consensus 5 ~~SpLvp~Ref~fLRY-c~~le~-G~wvV~DvSld~~~~~~~~~-~~~~~~r~~~lPSGcLIq~~~n---G~SkVtwVeH 78 (581)
+|-| +.+|||..|.. +...+. ..++|+..+++.. ..| ....++|++ -=||..|+..+. +-..|+|.==
T Consensus 100 ~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~ma 173 (208)
T cd08864 100 FPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESLYENAVLGR-YASVEKISYLPDADGKSNKVEWIMA 173 (208)
T ss_pred CCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCccCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEE
Confidence 5666 88999999999 666552 5778888888642 222 334789998 789999998875 4789999983
Q ss_pred eeccCC-Cccc
Q 008019 79 MDLEPW-SVPE 88 (581)
Q Consensus 79 ~e~d~~-~v~~ 88 (581)
...|+. .+|.
T Consensus 174 T~sDpGG~IP~ 184 (208)
T cd08864 174 TRSDAGGNIPR 184 (208)
T ss_pred EeeCCCCcCcH
Confidence 344454 4764
No 75
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=72.63 E-value=13 Score=37.95 Aligned_cols=65 Identities=18% Similarity=0.363 Sum_probs=47.7
Q ss_pred hhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEE-EEEeeecccCCChhHHHHHHhh--hc
Q 008019 146 NEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HR 222 (581)
Q Consensus 146 ~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL-~A~tS~wL~pvpp~~lf~FLRd--~R 222 (581)
.-|.-+-.+++|..... .++|+|-.|...+ .|.++ .-++..-++.++++.++++|.| .|
T Consensus 17 ~~~~~~~~~~~W~l~~~--~~gikVy~r~~~~----------------sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r 78 (235)
T cd08872 17 TYALEDVGADGWQLFAE--EGEMKVYRREVEE----------------DGVVLDPLKATHAVKGVTGHEVCHYFFDPDVR 78 (235)
T ss_pred HHHHccCCCCCCEEEEe--CCceEEEEEECCC----------------CCceeeeEEEEEEECCCCHHHHHHHHhChhhH
Confidence 33445566679987653 4579999987741 12332 4678888866999999999998 99
Q ss_pred hhhhhc
Q 008019 223 SEWADS 228 (581)
Q Consensus 223 seWd~l 228 (581)
.+||..
T Consensus 79 ~~Wd~~ 84 (235)
T cd08872 79 MDWETT 84 (235)
T ss_pred HHHHhh
Confidence 999975
No 76
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=72.55 E-value=13 Score=24.53 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhH
Q 008019 468 KTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKT 522 (581)
Q Consensus 468 ~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~e 522 (581)
+.+++ .+..++.++. +-.+.|.|..+.++++++..++.+.+...-..+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (67)
T smart00091 4 RAILESLPDGIFVLDL--DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREE 57 (67)
T ss_pred HHHHhhCCceEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHH
Confidence 34453 5666666654 44678899999999999999988776655555555433
No 77
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=70.53 E-value=1.1e+02 Score=29.96 Aligned_cols=68 Identities=22% Similarity=0.459 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHH
Q 008019 135 RALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL 214 (581)
Q Consensus 135 ~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~l 214 (581)
-++.|.|..-+.. .++|.... ..++++|.+++..+ . .+ -..++..-+ |.+|+.+
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~------------~---~~--~~~k~~~~i-~~~~~~v 61 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE------------F---TG--HLYRAEGIV-DALPEKV 61 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC------------C---CC--EEEEEEEEE-cCCHHHH
Confidence 3445555555542 27899764 33689999986521 1 12 224677777 7999999
Q ss_pred HHHHhh----hchhhhhc
Q 008019 215 LRFLRE----HRSEWADS 228 (581)
Q Consensus 215 f~FLRd----~RseWd~l 228 (581)
|++|.+ .|.+||..
T Consensus 62 ~~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 62 IDVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHHhcCcccccccccc
Confidence 999986 89999965
No 78
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=68.44 E-value=23 Score=40.97 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=64.2
Q ss_pred HhcCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccC--C--CeeEEc
Q 008019 470 LWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCL--Q--SGICLS 545 (581)
Q Consensus 470 L~~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~--y--~GvRiS 545 (581)
+=+.|.+++..+. +-.++|.|+++.++|+++-+|+.+-|...-..+..+......+.++...|-... + .-....
T Consensus 18 le~~~~~i~~~d~--~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 95 (799)
T PRK11359 18 LEQNMMGAVLINE--NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEK 95 (799)
T ss_pred HHhhcCcEEEEcC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCccccccceeeEEec
Confidence 3357888888775 568999999999999999999999877665555554444444445444432211 1 112346
Q ss_pred cCCCcEEEeeeEEeEeecCCCceEEEE
Q 008019 546 SMGRPISYERAVAWKVLNEEENAHCIC 572 (581)
Q Consensus 546 s~Grrf~ie~a~vW~v~D~~g~~~GqA 572 (581)
+.|++++++-.. ..++.+|...+.+
T Consensus 96 ~dG~~~~v~~~~--~~~~~~g~~~~~~ 120 (799)
T PRK11359 96 KDGSKIWTRFAL--SKVSAEGKVYYLA 120 (799)
T ss_pred CCcCEEEEEEEe--eeeccCCceEEEE
Confidence 788888876433 4456667665543
No 79
>PRK13560 hypothetical protein; Provisional
Probab=66.35 E-value=50 Score=37.90 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=63.3
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcc-cHHHHHhhccCHHHhhcCccccccCccchhHH------------------h
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFA-NQAGLDMLETTLVALQDITLEKIFDDSGRKTL------------------C 524 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~Ya-N~aAL~l~e~~w~el~~lpsr~sae~~~r~er------------------~ 524 (581)
+.++.+++ +|.+|+..+. +-.+.|. |.++.++|+++.+++.+.+.....++ .+++. .
T Consensus 332 ~~l~~l~~~~~~~i~~~d~--~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 408 (807)
T PRK13560 332 DMLRAIIEAAPIAAIGLDA--DGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPE-LNEEFWCGDFQEWYPDGRPMAFDA 408 (807)
T ss_pred HHHHHHHHhCcccEEEEcC--CCCEEEecCHHHHHHhCCCHHHHcCCCccccChh-hhhhhhhchhhhcCCcCCcchhhh
Confidence 34566664 7888887765 4456665 67788899999999999775332211 11111 0
Q ss_pred hhhHHHHHhccccCCCeeE-EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 525 SEFPQIMQQGFMCLQSGIC-LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 525 ~lL~~v~~qG~~~~y~GvR-iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..+.+..++|-.....-++ ..+.|+.+++. ..+-.+.|++|+..|.-.++.+
T Consensus 409 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 409 CPMAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred hhHHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 0122334444432222233 34566666553 3455677999998887666543
No 80
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=65.48 E-value=19 Score=35.93 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccccc
Q 008019 465 SILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIF 515 (581)
Q Consensus 465 ~~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sa 515 (581)
+.++.++ +.|..|+-.+.+. ..+|+|+++.++|++++++..+.|...-.
T Consensus 6 ~~l~~~~~~~~~~i~~~d~~g--~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 55 (333)
T TIGR02966 6 SRFRAAAQALPDAVVVLDEEG--QIEWCNPAAERLLGLRWPDDLGQRITNLI 55 (333)
T ss_pred HHHHHHHHhCcCcEEEECCCC--cEEEEcHHHHHHhCCChHHHcCCcHHHHc
Confidence 3345666 4899998888654 59999999999999999999987765544
No 81
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=64.20 E-value=15 Score=39.46 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccccc
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIF 515 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sa 515 (581)
..++.+++ .|++|+..+ .+-.+.|.|++|.++|++++++..+.+...-.
T Consensus 98 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~ 147 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTT--EEGNIFWCNGLAQQLLGFRWPEDNGQNILNLL 147 (430)
T ss_pred HHHHHHHHhCCCeEEEEc--CCCceeHHHHHHHHHhCCCChHhCCCcHHHHh
Confidence 45677774 899999888 46789999999999999999999988765443
No 82
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=58.83 E-value=2.1e+02 Score=29.06 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhc
Q 008019 151 GFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 228 (581)
Q Consensus 151 ~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 228 (581)
--..++|..-... +||.|..++++. .+ |-|-= +---+ +.-|+.|++++.+ +|.+||..
T Consensus 19 ~~~~~~Wkl~k~~--~~~~v~~k~~~e--f~-------------gkl~R--~Egvv-~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 19 SILEEEWRVAKKS--KDVTVWRKPSEE--FG-------------GYLYK--AQGVV-EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred cccccCcEEEEeC--CCEEEEEecCCc--CC-------------CceEE--EEEEe-cCCHHHHHHHHhcccchhcccch
Confidence 3467899865433 789999998852 12 11111 11112 5778999999997 99999986
Q ss_pred c
Q 008019 229 S 229 (581)
Q Consensus 229 ~ 229 (581)
.
T Consensus 79 v 79 (202)
T cd08902 79 M 79 (202)
T ss_pred h
Confidence 3
No 83
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=57.10 E-value=60 Score=36.85 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=67.5
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
...+++++ -|+.|++.+.+. ...|.|++|.++|+++-+++.+.|-.--.... .+.++.++|-.. .....
T Consensus 80 ~~L~aIL~sm~eGVi~vD~~G--~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~ 149 (520)
T PRK10820 80 RALSALLEALPEPVLSIDMKG--KVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEH 149 (520)
T ss_pred HHHHHHHHhCCCcEEEECCCC--eeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEE
Confidence 44566675 699999999866 58999999999999998888887765444322 244556665542 22356
Q ss_pred EccCCCcEEEeeeEEeEeecCCCce--EEEEEeec
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENA--HCICFMFI 576 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~--~GqAa~F~ 576 (581)
+...|+.|.++-.-+. +.|++|.. .|.-.+|.
T Consensus 150 v~~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlr 183 (520)
T PRK10820 150 VVINGQDFLMEITPVY-LQDENDQHVLVGAVVMLR 183 (520)
T ss_pred EEECCEEEEEEEEeee-ecCCCCceeEEEEEEEec
Confidence 6677887776543332 22666664 67666664
No 84
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=45.53 E-value=58 Score=28.37 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=28.6
Q ss_pred ceeEeecCCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH
Q 008019 60 GYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL 109 (581)
Q Consensus 60 GcLIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL 109 (581)
-+-+.|.++|.|+|+|..+.+.... +..|++...+-=+-+..++.|
T Consensus 90 ~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 90 TIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred EEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHH
Confidence 3557888888899999999887755 333444433333334444444
No 85
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=42.66 E-value=1.5e+02 Score=35.47 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred ecccCCChhHHHHHHhh---hchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccc
Q 008019 204 MLLQDVPPAILLRFLRE---HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMA 280 (581)
Q Consensus 204 ~wL~pvpp~~lf~FLRd---~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~ 280 (581)
=-+ +.+|+.||++|-+ .|.|||.... .| +.+-+| +...+|.--++...-
T Consensus 233 GVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~-------------------~~----~vIE~I----D~htdI~Y~~~~~~~ 284 (719)
T PLN00188 233 GVV-EATCEEIFELVMSMDGTRFEWDCSFQ-------------------YG----SLVEEV----DGHTAILYHRLQLDW 284 (719)
T ss_pred EEe-cCCHHHHHHHHhccCcccccchhccc-------------------ce----EEEEEe----cCCeEEEEEEecccc
Confidence 344 7899999999973 9999998732 12 223333 333344433433110
Q ss_pred cCcccCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCCC----CCCC--ccccCCcEEecC
Q 008019 281 HYREDMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDASF----SDDA--PIIPSGFRIIPL 337 (581)
Q Consensus 281 ~~~~~~~~~~~~liLQe~s~~De~a~G~~s~vV-yAPVD~~d----s~~v--pLLPSGF~IlPd 337 (581)
. -.-+-+||-.++.-- --+ -. |++++ |-+|.-+. +.+| -+-|+||.|.|+
T Consensus 285 ~--~~~ispRDFV~~Ryw-rr~--eD--GsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 285 F--PMFVWPRDLCYVRYW-RRN--DD--GSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred c--cCccCcceeEEEEEE-EEc--CC--CcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 0 112445677777762 233 34 34655 55555432 2222 278999999997
No 86
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=41.84 E-value=2e+02 Score=23.88 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=50.9
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhH--HhhhhHHHHHhccccCCCeeEEccCCC
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKT--LCSEFPQIMQQGFMCLQSGICLSSMGR 549 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~e--r~~lL~~v~~qG~~~~y~GvRiSs~Gr 549 (581)
..|..++..+. +-.+.|.|+++.++++++-.+....+............ ...........+......-..+.+.|+
T Consensus 120 ~~~~~~~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 197 (232)
T COG2202 120 ASPDGIWVLDE--DGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGE 197 (232)
T ss_pred hCCceEEEEeC--CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEecCCC
Confidence 46777777776 78899999999999999988888666555544333222 222222233334445556666778888
Q ss_pred c
Q 008019 550 P 550 (581)
Q Consensus 550 r 550 (581)
+
T Consensus 198 ~ 198 (232)
T COG2202 198 R 198 (232)
T ss_pred E
Confidence 6
No 87
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=41.27 E-value=1.1e+02 Score=31.42 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=42.8
Q ss_pred cccccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEe
Q 008019 4 YAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIR 64 (581)
Q Consensus 4 ~~~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq 64 (581)
..|.|+ -.||+-++|-.-..++..-+||-.|+.. +..|+...++|..-.=||.+||
T Consensus 108 kfP~p~-~~RdYV~~Rr~~~~~~k~~~i~s~~v~h----~s~P~~~~~vRv~~~~s~~~I~ 163 (219)
T KOG2761|consen 108 KFPFPM-SNRDYVYVRRWWESDEKDYYIVSKSVQH----PSYPPLKKKVRVTVYRSGWLIR 163 (219)
T ss_pred eCCccc-CCccEEEEEEEEecCCceEEEEEecccC----CCcCCcCCcEEEEEEEEEEEEE
Confidence 445444 5699999988888877777777777753 4455555679999999999999
No 88
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.22 E-value=76 Score=28.37 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=32.7
Q ss_pred eEeecCC-CceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 62 LIRPCEG-GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 62 LIq~~~n-G~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
-+++.++ |+|+|+|--|++... .+| -++++.-+-=+.+..+.+|| +||
T Consensus 94 ~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 94 RLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888 789999988877653 344 36664444446777888884 665
No 89
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=33.96 E-value=1.2e+02 Score=26.47 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=16.9
Q ss_pred eeEeecCCCceEEEEEEeeec
Q 008019 61 YLIRPCEGGGSIIHIVDHMDL 81 (581)
Q Consensus 61 cLIq~~~nG~SkVtwVeH~e~ 81 (581)
+.++|.++| |.|+|..|++.
T Consensus 89 ~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 89 WRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp EEEEEETTT-EEEEEEEEEEE
T ss_pred EEEEEcCCC-EEEEEEEEEEE
Confidence 457888877 99999999997
No 90
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=32.73 E-value=2.5e+02 Score=30.61 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=56.6
Q ss_pred HHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHH---HhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 468 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLV---ALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~---el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
+.+. ..+++|+.-+. +=...|.|++|.++|+++-. +..+-+... -.....+.++++.|-... ...
T Consensus 224 ~~il~~~~~gIi~~D~--~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~ 292 (542)
T PRK11086 224 QAMLQSIKEGVIAVDD--RGEVTLINDEAKRLFNYKKGLEDDPLGTDVES-------WMPVSRLKEVLRTGTPRR--DEE 292 (542)
T ss_pred HHHHHHhcCcEEEECC--CCeEEEEhHHHHHHhCCCcCCcccccCCcHHH-------hCCchhHHHHHhcCCCcc--ceE
Confidence 4445 36888888775 56789999999999966521 222111111 111334566666664332 234
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+...|+.+.+... .+.| +|...|.-.+|.+
T Consensus 293 ~~~~g~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 293 ININGRLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred EEECCEEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 4556777766543 3345 7888888777754
No 91
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=31.76 E-value=1.9e+02 Score=31.84 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----------------------HHHHHHhCCCCCCCCCh----hHHHHHHhcCC
Q 008019 421 SRFGSNAGLRPPPGSPEAHTLARWIC----------------------QSYRCYLGAELLKCEGN----ESILKTLWHHS 474 (581)
Q Consensus 421 ~~~~~~~~~~~~~~~pe~~~l~~~i~----------------------~SY~~~~G~~L~~~~~~----~~~~~~L~~ap 474 (581)
+.|..+.|..+||.-+.+..|+..|+ |||-..+|+|--.+++. -.+=+.|+.-.
T Consensus 7 AdLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~d 86 (373)
T COG1415 7 ADLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPED 86 (373)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCccc
Confidence 34567788889999999999888665 45556667665333321 23334666667
Q ss_pred CeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHH----HHHhccccCC-CeeEEccCCC
Q 008019 475 DAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQ----IMQQGFMCLQ-SGICLSSMGR 549 (581)
Q Consensus 475 ~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~----v~~qG~~~~y-~GvRiSs~Gr 549 (581)
.-|.-|++|.. .+.+| -+|+..+--+.-+++.+-.+-.++.++ +.|+|| ++| .++=+|.+|+
T Consensus 87 lgi~V~GGKG~-----------~~~~t-p~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~G~ 153 (373)
T COG1415 87 LGIKVAGGKGR-----------NARKT-PDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSEDGR 153 (373)
T ss_pred CceEEecCcch-----------hhccC-hHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCCCC
Confidence 77777888731 22222 245555544555555555555555555 578999 666 4999999999
Q ss_pred cEEEeeeE
Q 008019 550 PISYERAV 557 (581)
Q Consensus 550 rf~ie~a~ 557 (581)
-.-|.|+.
T Consensus 154 w~VIQQGM 161 (373)
T COG1415 154 WAVIQQGM 161 (373)
T ss_pred EEEEEcCc
Confidence 99888865
No 92
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=29.30 E-value=1.3e+02 Score=26.96 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=34.6
Q ss_pred ceeEeecCCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH-Hhhhc
Q 008019 60 GYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLRQ 114 (581)
Q Consensus 60 GcLIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL-R~~er 114 (581)
-..++|.++|.|+|++.-|++..- .++.++++.-+.=..+..+.++ +.|++
T Consensus 86 ~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 86 EWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred EEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999762 2444444333333567777777 46664
No 93
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=25.82 E-value=1.2e+02 Score=32.04 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=30.2
Q ss_pred HHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhc
Q 008019 467 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQD 508 (581)
Q Consensus 467 ~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~ 508 (581)
++.++ +.|++|+..+. +-.+.|.|+++.+++++.-.+...
T Consensus 132 ~~~~~~~~~~~i~~~d~--~~~i~~~N~~~~~~~g~~~~~~~~ 172 (494)
T TIGR02938 132 IESVVDAAPVAFVLLDP--TGRVILDNQEYKKLATDLRVKEPA 172 (494)
T ss_pred HHHHHhcccceEEEEcC--CCCEEEechhHHHhhchhhhhHHH
Confidence 44555 47888888874 678999999999999876655443
No 94
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=24.79 E-value=41 Score=34.48 Aligned_cols=59 Identities=17% Similarity=0.373 Sum_probs=39.2
Q ss_pred CCCCCCccccccCCCcceEEEE-ccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhh
Q 008019 151 GFTDEGWSMLESDGIDDVTVHV-NSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWAD 227 (581)
Q Consensus 151 ~s~~~~W~~l~~~g~~dVrv~~-r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~ 227 (581)
+-++.+|..+-.. .+++|.. |.- ..|.. -+.|- .-+..++|..|+||+-| -|.+||+
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~-----------~~g~~----~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~ 84 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRP-----------KTGLY----EYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDD 84 (219)
T ss_pred cCcccchhhhccc--CCceEEEEccc-----------CCCCE----EEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHH
Confidence 5677899876433 3555655 222 12321 34444 33568999999999997 9999999
Q ss_pred cc
Q 008019 228 SS 229 (581)
Q Consensus 228 l~ 229 (581)
.-
T Consensus 85 ~v 86 (219)
T KOG2761|consen 85 MV 86 (219)
T ss_pred Hh
Confidence 84
No 95
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.78 E-value=1.2e+02 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.025 Sum_probs=21.2
Q ss_pred eEeecCCCceEEEEEEeeeccCCCccccccccc
Q 008019 62 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 94 (581)
Q Consensus 62 LIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~ 94 (581)
-+++. +|+|+|+|..+.++.-.....++.+++
T Consensus 98 ~~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~ 129 (150)
T cd07818 98 TLEPV-GGGTKVTWGMSGELPFPLKLMYLFLDM 129 (150)
T ss_pred EEEEc-CCceEEEEEEEecCCchHHHHHHHhhH
Confidence 35677 556999999988876544433444444
No 96
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=24.44 E-value=23 Score=40.93 Aligned_cols=63 Identities=37% Similarity=0.558 Sum_probs=49.4
Q ss_pred cCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCC
Q 008019 11 PARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWS 85 (581)
Q Consensus 11 p~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~ 85 (581)
|.|++-.+| |--|.+..|++.....+ ... +|+-++-|-|||++|+.|-|||+-+--+++.-.+
T Consensus 577 ~~~~~~ViR-------gacv~a~~svk~~~a~~----l~~-vrA~~~~~r~liep~g~g~sr~~~i~r~dlkg~~ 639 (674)
T KOG2200|consen 577 PSRDFGVIR-------GACVLAPLSVKVSMAIQ----LGG-VRATVLDSRFLIEPCGGGQSRVTHICRVDLKGRS 639 (674)
T ss_pred CCCCceeee-------eeeeecccccchhhhhh----hcc-chhhhhhhhhhccccCCcchhhhhhhhhhcccCC
Confidence 789999999 66777777776543222 122 8999999999999999999999999888886544
No 97
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.09 E-value=1.4e+02 Score=25.87 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=31.1
Q ss_pred eeEeecCCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH-Hhhh
Q 008019 61 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLR 113 (581)
Q Consensus 61 cLIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL-R~~e 113 (581)
+.+.+.++|+|+|++.....- ....++.+++...+.=+-+.++..| ++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFSG---LLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEEE---EEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 456787778899988643221 1223355556666666777788888 4665
No 98
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.39 E-value=1.6e+02 Score=25.41 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=25.1
Q ss_pred eeEeecCCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH
Q 008019 61 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL 109 (581)
Q Consensus 61 cLIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL 109 (581)
+-+++.++ +|+|+|-.+++. ..+..++.+++.....=.-+.++..|
T Consensus 89 ~~~~~~~~-~t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (140)
T cd08865 89 YTFEPVGG-GTRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENL 134 (140)
T ss_pred EEEEEcCC-ceEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44677766 599999998876 22333444444332222334444444
No 99
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=21.46 E-value=1.6e+02 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=17.9
Q ss_pred eEeecCCCceEEEEEEeeecc
Q 008019 62 LIRPCEGGGSIIHIVDHMDLE 82 (581)
Q Consensus 62 LIq~~~nG~SkVtwVeH~e~d 82 (581)
.+++.++|.|+|||.-+++..
T Consensus 91 ~~~~~~~~~t~Vt~~~~~~~~ 111 (142)
T cd08861 91 RFEPLGGGGTRVTLRHDFTLG 111 (142)
T ss_pred EEEECCCCcEEEEEEEEEEEC
Confidence 567888788999999999976
No 100
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.90 E-value=62 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.580 Sum_probs=22.0
Q ss_pred EeeecccCCChhHHHHHHhh--hchhhhhc
Q 008019 201 KASMLLQDVPPAILLRFLRE--HRSEWADS 228 (581)
Q Consensus 201 ~tS~wL~pvpp~~lf~FLRd--~RseWd~l 228 (581)
..+.-+ +.||+.||++|.| +..+|...
T Consensus 2 ~~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~ 30 (140)
T cd08865 2 EESIVI-ERPVEEVFAYLADFENAPEWDPG 30 (140)
T ss_pred ceEEEE-cCCHHHHHHHHHCccchhhhccC
Confidence 356677 7999999999998 77788654
No 101
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=20.29 E-value=63 Score=38.20 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=36.9
Q ss_pred hhHHHHHhccccCCC---eeEEcc-CCCcEEEeeeEEeEeecCCCceEEE
Q 008019 526 EFPQIMQQGFMCLQS---GICLSS-MGRPISYERAVAWKVLNEEENAHCI 571 (581)
Q Consensus 526 lL~~v~~qG~~~~y~---GvRiSs-~Grrf~ie~a~vW~v~D~~g~~~Gq 571 (581)
-|++|. +|...... |||+-. .|-+.+=.+..+|+|+|++|+..|+
T Consensus 362 ~l~~Vl-~GlF~~~~rLfGI~~~e~~~~~vwHpDVr~~~v~d~~g~~~g~ 410 (683)
T COG0339 362 PLNKVL-EGLFEVAKRLFGITFVERKDIPVWHPDVRVFEVFDENGELIGL 410 (683)
T ss_pred ChhHHH-HHHHHHHHHHcCeEEEECCCCCccCCCceEEEEEcCCCCEEEE
Confidence 355666 66655544 999988 6999999999999999999998886
No 102
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.10 E-value=76 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=23.5
Q ss_pred EeeecccCCChhHHHHHHhh--hchhhhhc
Q 008019 201 KASMLLQDVPPAILLRFLRE--HRSEWADS 228 (581)
Q Consensus 201 ~tS~wL~pvpp~~lf~FLRd--~RseWd~l 228 (581)
++++.+ +.||+.|++.|.| +..+|.-.
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~ 30 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPN 30 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcC
Confidence 468899 7999999999998 88899755
No 103
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=20.06 E-value=2.1e+02 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=32.2
Q ss_pred hHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeE
Q 008019 521 KTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWK 560 (581)
Q Consensus 521 ~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~ 560 (581)
.+-+.-+.+++.+|+ .+|.+..++-.|.....-+|+|..
T Consensus 15 ~~fc~rVt~aL~~GW-~l~GsP~~t~~~~~~~~~QAvvke 53 (54)
T PF08410_consen 15 SAFCHRVTEALNEGW-QLYGSPTYTFDGGGMICGQAVVKE 53 (54)
T ss_pred HHHHHHHHHHHHcCC-EecCCceEEECCCcEEEEEEEEec
Confidence 467777899999999 899999998888777777777754
Done!