Query 008019
Match_columns 581
No_of_seqs 211 out of 389
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.5 1.1E-13 3.9E-18 134.9 13.3 102 6-115 125-229 (231)
2 1em2_A MLN64 protein; beta bar 99.1 5.5E-10 1.9E-14 108.8 12.7 100 7-115 124-226 (229)
3 2pso_A STAR-related lipid tran 99.0 8.9E-10 3E-14 109.1 11.6 99 7-115 128-228 (237)
4 3p0l_A Steroidogenic acute reg 99.0 2.6E-09 8.9E-14 103.6 10.9 98 7-113 113-213 (221)
5 1ln1_A PC-TP, phosphatidylchol 98.6 1.2E-07 4.2E-12 90.6 10.9 105 2-115 102-210 (214)
6 3fo5_A Thioesterase, adipose a 98.6 3.6E-08 1.2E-12 99.4 7.4 82 2-89 137-222 (258)
7 1jss_A Stard4, cholesterol-reg 98.5 3.1E-07 1.1E-11 89.4 11.1 95 8-113 125-222 (224)
8 3qsz_A STAR-related lipid tran 97.9 5.3E-05 1.8E-09 71.1 10.2 96 9-114 83-179 (189)
9 4eet_B Phototropin-2; LOV, blu 97.8 0.00029 1E-08 56.2 11.7 105 472-577 5-110 (115)
10 3t50_A Blue-light-activated hi 97.8 0.00027 9.2E-09 58.4 11.7 105 472-577 5-110 (128)
11 3lyx_A Sensory BOX/ggdef domai 97.8 0.00054 1.8E-08 54.3 12.9 111 464-577 6-117 (124)
12 2e3n_A Lipid-transfer protein 97.7 0.00017 5.9E-09 71.1 11.5 101 4-113 127-245 (255)
13 3ue6_A Aureochrome1; PAS/LOV d 97.7 0.00031 1.1E-08 60.8 11.5 112 465-577 35-148 (166)
14 1n9l_A PHOT-LOV1, putative blu 97.6 0.00059 2E-08 56.7 11.2 103 474-577 3-106 (109)
15 4hia_A LOV protein; PAS, HTH, 97.6 0.00049 1.7E-08 60.9 10.9 112 465-577 7-120 (176)
16 2gj3_A Nitrogen fixation regul 97.6 0.0009 3.1E-08 55.8 11.9 109 464-577 4-115 (120)
17 3luq_A Sensor protein; PAS, hi 97.5 0.00035 1.2E-08 55.8 8.3 109 465-577 3-112 (114)
18 2z6d_A Phototropin-2; PAS-fold 97.5 0.0012 4.2E-08 52.4 11.2 111 466-577 7-119 (130)
19 3p7n_A Sensor histidine kinase 97.5 0.00069 2.3E-08 64.8 11.4 112 465-577 63-176 (258)
20 3sw1_A Sensory box protein; li 97.4 0.00095 3.3E-08 57.5 10.9 113 464-577 24-138 (162)
21 1byw_A Protein (human ERG pota 97.4 0.002 6.7E-08 49.8 11.3 93 484-577 12-106 (110)
22 3d72_A Vivid PAS protein VVD; 97.3 0.002 6.7E-08 55.1 11.1 107 469-576 30-148 (149)
23 3f1p_A Endothelial PAS domain- 97.3 0.0025 8.7E-08 52.3 11.4 101 472-576 7-109 (117)
24 3mqq_A Transcriptional regulat 97.3 0.00069 2.4E-08 56.2 7.6 106 466-576 4-111 (120)
25 1d06_A Nitrogen fixation regul 97.1 0.0025 8.5E-08 53.9 9.8 89 467-557 18-111 (130)
26 2r78_A Sensor protein; sensory 97.1 0.0016 5.4E-08 54.6 8.5 90 464-556 10-100 (117)
27 2pr5_A Blue-light photorecepto 97.1 0.0047 1.6E-07 52.2 11.5 104 469-575 3-108 (132)
28 3k3c_A Protein RV1364C/MT1410; 96.9 0.0023 7.8E-08 55.4 8.1 110 464-577 16-131 (158)
29 2l0w_A Potassium voltage-gated 96.9 0.0091 3.1E-07 48.3 11.2 105 472-577 27-134 (138)
30 3kx0_X Uncharacterized protein 96.9 0.0027 9.3E-08 57.7 8.7 110 464-577 36-151 (185)
31 2v0u_A NPH1-1, LOV2; kinase, t 96.9 0.012 4.1E-07 47.9 11.7 105 472-577 10-115 (146)
32 2r55_A STAR-related lipid tran 96.8 0.062 2.1E-06 51.8 18.1 150 131-337 21-181 (231)
33 3f1p_B ARYL hydrocarbon recept 96.8 0.0045 1.5E-07 51.3 8.7 105 468-576 5-113 (121)
34 2wkq_A NPH1-1, RAS-related C3 96.8 0.009 3.1E-07 59.2 11.9 105 472-577 19-124 (332)
35 3olo_A Two-component sensor hi 96.8 0.016 5.3E-07 46.6 11.1 84 466-556 14-98 (118)
36 3b33_A Sensor protein; structu 96.6 0.009 3.1E-07 48.7 8.9 105 466-577 8-113 (115)
37 3ewk_A Sensor protein; PAS dom 96.6 0.027 9.1E-07 52.8 13.2 103 472-577 119-227 (227)
38 2vv6_A FIXL, sensor protein FI 96.5 0.016 5.5E-07 47.9 10.0 83 473-557 2-88 (119)
39 3eeh_A Putative light and redo 96.5 0.021 7.1E-07 45.2 10.1 109 465-577 11-123 (125)
40 3ewk_A Sensor protein; PAS dom 96.5 0.013 4.6E-07 54.9 10.1 92 484-576 7-98 (227)
41 3mjq_A Uncharacterized protein 96.4 0.012 4E-07 47.8 8.5 102 469-576 3-105 (126)
42 3mxq_A Sensor protein; PSI2, M 96.4 0.013 4.3E-07 53.8 9.5 109 465-577 22-143 (152)
43 3fc7_A HTR-like protein, senso 96.4 0.01 3.4E-07 48.4 7.7 104 465-577 19-123 (125)
44 3nja_A Probable ggdef family p 96.3 0.013 4.5E-07 47.1 7.8 109 466-577 8-119 (125)
45 2kdk_A ARYL hydrocarbon recept 96.2 0.025 8.5E-07 46.3 9.4 96 472-571 11-109 (121)
46 3mfx_A Sensory BOX/ggdef famil 96.1 0.024 8.3E-07 49.8 9.3 88 466-555 8-103 (129)
47 2pso_A STAR-related lipid tran 96.1 0.18 6E-06 49.5 16.2 173 153-420 48-227 (237)
48 3icy_A Sensor protein; sensory 96.0 0.019 6.6E-07 46.0 7.7 110 464-576 3-115 (118)
49 1ln1_A PC-TP, phosphatidylchol 95.8 0.22 7.6E-06 46.9 15.1 58 153-229 26-85 (214)
50 3bwl_A Sensor protein; structu 95.7 0.042 1.4E-06 45.2 8.5 85 465-554 17-104 (126)
51 1jss_A Stard4, cholesterol-reg 95.6 0.25 8.4E-06 47.6 14.9 175 154-419 42-222 (224)
52 1v9y_A Heme PAS sensor protein 95.6 0.064 2.2E-06 45.6 9.4 99 466-568 41-144 (167)
53 1ll8_A PAS kinase; PAS domain, 95.5 0.011 3.6E-07 48.6 3.9 82 473-555 7-92 (114)
54 3fo5_A Thioesterase, adipose a 95.4 0.24 8.1E-06 49.7 14.3 150 127-337 43-201 (258)
55 3qsz_A STAR-related lipid tran 95.3 0.64 2.2E-05 43.0 16.1 55 155-229 3-59 (189)
56 3p0l_A Steroidogenic acute reg 95.0 0.87 3E-05 43.5 16.3 191 135-419 13-213 (221)
57 4hi4_A Aerotaxis transducer AE 94.9 0.23 8E-06 41.5 10.7 99 466-577 6-117 (121)
58 3a0s_A Sensor protein; PAS-fol 94.7 0.37 1.3E-05 35.8 10.5 93 474-576 2-95 (96)
59 1em2_A MLN64 protein; beta bar 94.4 1.7 5.8E-05 41.6 16.9 129 154-337 41-178 (229)
60 3fg8_A Uncharacterized protein 93.7 0.078 2.7E-06 44.1 5.1 66 468-535 15-81 (118)
61 3h9w_A Diguanylate cyclase wit 93.7 0.22 7.6E-06 40.4 7.8 89 485-576 13-104 (115)
62 3vol_A Aerotaxis transducer AE 92.3 0.7 2.4E-05 44.3 10.3 114 451-577 8-134 (233)
63 2w0n_A Sensor protein DCUS; si 90.5 0.33 1.1E-05 38.5 5.0 98 465-577 15-116 (118)
64 2vlg_A Sporulation kinase A; h 89.8 0.71 2.4E-05 39.3 6.8 78 472-555 7-85 (111)
65 4f3l_A Mclock, circadian locom 89.7 1.1 3.9E-05 46.0 9.4 91 484-575 259-350 (361)
66 2jhe_A Transcription regulator 89.4 0.93 3.2E-05 40.6 7.6 90 465-567 80-170 (190)
67 4eho_A Bacteriophytochrome, PA 87.3 0.94 3.2E-05 50.5 7.4 102 472-577 526-627 (635)
68 3a0r_A Sensor protein; four he 83.0 0.96 3.3E-05 44.5 4.4 99 468-577 11-112 (349)
69 3mr0_A Sensory box histidine k 81.4 7.2 0.00025 32.9 8.9 106 467-576 11-120 (142)
70 2d4r_A Hypothetical protein TT 78.7 4.2 0.00014 34.1 6.5 55 61-116 91-146 (147)
71 2e3n_A Lipid-transfer protein 76.4 2.8 9.6E-05 40.8 5.3 59 153-229 45-106 (255)
72 3rty_A Period circadian protei 75.6 11 0.00037 38.9 9.6 89 474-566 154-248 (339)
73 2qkp_A Uncharacterized protein 73.4 9.4 0.00032 34.2 7.6 105 465-577 19-129 (151)
74 3cax_A Uncharacterized protein 68.7 15 0.00053 37.7 9.0 104 465-577 239-343 (369)
75 4f3l_B BMAL1B; BHLH, PAS, circ 64.7 23 0.00077 36.7 9.3 94 477-574 281-377 (387)
76 1nwz_A PYP, photoactive yellow 63.4 27 0.00092 31.2 8.3 97 470-571 22-120 (125)
77 1mzu_A PPR; photoactive yellow 61.1 31 0.001 31.1 8.2 97 470-571 27-125 (129)
78 4dj3_A Period circadian protei 45.1 72 0.0025 32.4 9.0 84 477-564 177-264 (317)
79 4f3l_A Mclock, circadian locom 42.4 32 0.0011 35.0 5.9 64 464-529 85-149 (361)
80 4dj2_A Period circadian protei 41.8 1.1E+02 0.0038 31.0 9.8 85 476-564 178-265 (320)
81 3gdi_A Period circadian protei 41.7 30 0.001 35.1 5.5 83 476-562 167-251 (309)
82 3tfz_A Cyclase; helix-GRIP, BE 31.5 61 0.0021 29.2 5.4 56 63-118 98-163 (172)
83 4f3l_B BMAL1B; BHLH, PAS, circ 22.0 98 0.0033 31.9 5.4 64 464-528 85-149 (387)
84 2d4r_A Hypothetical protein TT 22.0 48 0.0016 27.4 2.6 26 201-227 5-32 (147)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=134.88 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=90.3
Q ss_pred cccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--CCceEEEEEEeeeccC
Q 008019 6 PTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEP 83 (581)
Q Consensus 6 ~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--nG~SkVtwVeH~e~d~ 83 (581)
+++++++|||.++||+++.++|.|+|+.+|++. |..|+...++|+++++|||+|||++ +|.|+|||+.|+|...
T Consensus 125 ~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G 200 (231)
T 2r55_A 125 AMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSG 200 (231)
T ss_dssp TTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCS
T ss_pred cCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCC
Confidence 346899999999999999999999999999984 4455567899999999999999998 7899999999999987
Q ss_pred CCcccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019 84 WSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 115 (581)
Q Consensus 84 ~~v~~l~RpL~~Sg~afga~rw~aaLR-~~erl 115 (581)
+ +| +.++++.+..+...|++.|| +|+..
T Consensus 201 ~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 201 Y-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp S-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred C-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 6 66 68888999999999999995 88764
No 2
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.09 E-value=5.5e-10 Score=108.80 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=83.6
Q ss_pred ccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--CCceEEEEEEeeeccCC
Q 008019 7 TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPW 84 (581)
Q Consensus 7 SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--nG~SkVtwVeH~e~d~~ 84 (581)
.+++++|||.++|+++.. ++.++||-.|++. |..|+...++|++.+++|++|+|++ +|.|+|||+-|+|..-|
T Consensus 124 ~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~ 198 (229)
T 1em2_A 124 GGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR 198 (229)
T ss_dssp TTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS
T ss_pred CCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC
Confidence 578999999999999997 5669999999964 4456667899999999999999998 67899999999998875
Q ss_pred CcccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019 85 SVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 115 (581)
Q Consensus 85 ~v~~l~RpL~~Sg~afga~rw~aaLR-~~erl 115 (581)
+| +.++++.+.-+.-.++..|| +|+.+
T Consensus 199 -iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 199 -LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp -SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 67787777777777888886 77654
No 3
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.04 E-value=8.9e-10 Score=109.14 Aligned_cols=99 Identities=26% Similarity=0.372 Sum_probs=77.5
Q ss_pred ccCccCceeEEEEeeee-ecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCC
Q 008019 7 TTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWS 85 (581)
Q Consensus 7 SpLvp~Ref~fLRYc~~-le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~ 85 (581)
...+++|||.++|+.++ +++|.++||-+|++. |..|+. .++|++.+++|++|+|+++|.|+|||+-|+|.. ..
T Consensus 128 p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~ 201 (237)
T 2pso_A 128 MAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GH 201 (237)
T ss_dssp SSSCCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SS
T ss_pred CCCcCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CC
Confidence 34589999999999985 789999999999974 334555 899999999999999999999999999999988 56
Q ss_pred cccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019 86 VPEVLRPLYESSTLIAQKTTMAALR-HLRQI 115 (581)
Q Consensus 86 v~~l~RpL~~Sg~afga~rw~aaLR-~~erl 115 (581)
+|.-+..++.. ..-..+..|| +++.+
T Consensus 202 iP~~ln~~~~~----~~~~~l~~LR~~~~~~ 228 (237)
T 2pso_A 202 SPEWYSKGFGH----LCAAEVARIRNSFQPL 228 (237)
T ss_dssp CTTTTTTHHHH----HHHHHHHHHHHTTSCC
T ss_pred chHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 88665443322 2223566775 55554
No 4
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=98.95 E-value=2.6e-09 Score=103.63 Aligned_cols=98 Identities=22% Similarity=0.360 Sum_probs=81.8
Q ss_pred ccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCC--ceEEEEEEeeeccCC
Q 008019 7 TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG--GSIIHIVDHMDLEPW 84 (581)
Q Consensus 7 SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG--~SkVtwVeH~e~d~~ 84 (581)
.+++++|||.++||.++. +|.++|+-+|++. |..|+...|+|++.+++|++|+|+++| .|+|||+-|+|..-+
T Consensus 113 ~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~ 187 (221)
T 3p0l_A 113 GNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW 187 (221)
T ss_dssp -CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS
T ss_pred CCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC
Confidence 458999999999999985 6899999999863 445556789999999999999999988 999999999998876
Q ss_pred CcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 85 SVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 85 ~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
+| +.+++..+.-+.--++..|| +|+
T Consensus 188 -iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 188 -LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp -CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 45666666667778888995 776
No 5
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.64 E-value=1.2e-07 Score=90.55 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=79.2
Q ss_pred cccccccCccCceeEEEEeeeeec-CC--eEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEe
Q 008019 2 QLYAPTTLAPARDFWLLRYTSVLE-DG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDH 78 (581)
Q Consensus 2 qm~~~SpLvp~Ref~fLRYc~~le-~G--~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH 78 (581)
++.+|.|+ ..|||.++|+++.++ +| .|+|+-.|++. |..|+...++|++.+++|++|++.++|.|+||++-|
T Consensus 102 ~~~~p~p~-~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~ 176 (214)
T 1ln1_A 102 EVKYPFPM-SNRDYVYLRQRRDLDMEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYF 176 (214)
T ss_dssp EECCCTTS-CCEEEEEEEEEEEECSTTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEE
T ss_pred EEEcCCCC-CCceEEEEEEEEecccCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEE
Confidence 34567776 999999999999885 66 49999999974 334555689999999999999999999999999999
Q ss_pred eeccCCCcccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019 79 MDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 115 (581)
Q Consensus 79 ~e~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~erl 115 (581)
+|.. ..+|.-+ ++....-+...++..|| +|+..
T Consensus 177 ~Dp~-G~iP~~l---~n~~~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 177 DNPG-GQIPSWL---INWAAKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp ECCS-SCCCHHH---HHHHHHTHHHHHHHHHHHHHHTC
T ss_pred ECCC-CcccHHH---HHHHHHHHhHHHHHHHHHHHHhc
Confidence 9987 5677443 33333334555666664 56543
No 6
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.63 E-value=3.6e-08 Score=99.40 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=67.5
Q ss_pred ccccccc--CccCceeEEEEeeee-ecCCe-EEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEE
Q 008019 2 QLYAPTT--LAPARDFWLLRYTSV-LEDGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVD 77 (581)
Q Consensus 2 qm~~~Sp--Lvp~Ref~fLRYc~~-le~G~-wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVe 77 (581)
|+..|+| ++++|||..|||.+. ..+|. ++|+-+|++. |..|+...|+|++.+|+||+|+|+++|.|+|+++-
T Consensus 137 ~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~ 212 (258)
T 3fo5_A 137 HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYN 212 (258)
T ss_dssp EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEE
T ss_pred EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEE
Confidence 3446665 799999999999987 45775 9999999984 44666778999999999999999999999999999
Q ss_pred eeeccCCCcccc
Q 008019 78 HMDLEPWSVPEV 89 (581)
Q Consensus 78 H~e~d~~~v~~l 89 (581)
|++- ..+|-.
T Consensus 213 q~dp--G~lP~~ 222 (258)
T 3fo5_A 213 QATP--GVLNYV 222 (258)
T ss_dssp SCCG--GGHHHH
T ss_pred eeCC--CCCCce
Confidence 9873 445543
No 7
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.55 E-value=3.1e-07 Score=89.40 Aligned_cols=95 Identities=25% Similarity=0.416 Sum_probs=77.7
Q ss_pred cCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCC--ceEEEEEEeeeccCCC
Q 008019 8 TLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG--GSIIHIVDHMDLEPWS 85 (581)
Q Consensus 8 pLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG--~SkVtwVeH~e~d~~~ 85 (581)
|++.+|||.++|+.+..++| ++|+-+|++.. ..+ +.++|++.+++|++|+|+++| .|+|||+-|+|..-|
T Consensus 125 ~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~- 196 (224)
T 1jss_A 125 NIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM- 196 (224)
T ss_dssp TTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-
T ss_pred CCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-
Confidence 46999999999999999877 78889998732 222 379999999999999999875 899999999998765
Q ss_pred cccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 86 VPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 86 v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
+| +.+++..+.-+...++..|| +|+
T Consensus 197 iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 197 IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 55 46777766777888888886 665
No 8
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=97.88 E-value=5.3e-05 Score=71.07 Aligned_cols=96 Identities=23% Similarity=0.206 Sum_probs=68.1
Q ss_pred CccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecCCCceEEEEEEeeeccCCCccc
Q 008019 9 LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 88 (581)
Q Consensus 9 Lvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~nG~SkVtwVeH~e~d~~~v~~ 88 (581)
.+..|||.++|+.+..++|...|+=.+ . .+..|+...++|++.+++|++|++ .+|.|+||++-|+|..- .+|.
T Consensus 83 p~~~RD~v~~~~~~~~~~g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~ 155 (189)
T 3qsz_A 83 PVSNRDGVYHFTYEKAGDGAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS 155 (189)
T ss_dssp SCCCEEEEEEEEEEECTTSCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH
T ss_pred CcCCcceEEEEEEEECCCCeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH
Confidence 478999999999999888876555333 2 234455668999999999999999 99999999999999773 4554
Q ss_pred ccccccchhHHHHHHHHHHHHH-hhhc
Q 008019 89 VLRPLYESSTLIAQKTTMAALR-HLRQ 114 (581)
Q Consensus 89 l~RpL~~Sg~afga~rw~aaLR-~~er 114 (581)
-+-.. ...-+.-.++..|| +|+.
T Consensus 156 ~lvn~---~~~~~~~~~l~~L~k~~~~ 179 (189)
T 3qsz_A 156 WLANQ---TVVETPFGTLKALRSHLRQ 179 (189)
T ss_dssp HHHHH---TTTHHHHHHHHHHHHHHTC
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhhh
Confidence 33222 22223335566664 5554
No 9
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.78 E-value=0.00029 Score=56.17 Aligned_cols=105 Identities=7% Similarity=-0.010 Sum_probs=76.6
Q ss_pred cCCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 008019 472 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grr 550 (581)
+.|.+|+..+.+ ++-.+.|+|+++.++|+++.+++.+.+...-..+..++.....+.++.+.|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 84 (115)
T 4eet_B 5 FIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKK 84 (115)
T ss_dssp CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCE
Confidence 467888777653 2779999999999999999999999997666655555555555666666554333333446788988
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 551 ISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 551 f~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 85 FWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 8774 4666778999998887777654
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.77 E-value=0.00027 Score=58.42 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=79.4
Q ss_pred cCCCeeeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 008019 472 HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~~-dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grr 550 (581)
+.|.+|+..+.+. +-.++|+|.++.+||+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 84 (128)
T 3t50_A 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEA 84 (128)
T ss_dssp CCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCE
Confidence 4788888887654 779999999999999999999999997766655555555556666666665444444556788988
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 551 ISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 551 f~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 85 FWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 8875 4566678899998888777754
No 11
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.76 E-value=0.00054 Score=54.26 Aligned_cols=111 Identities=9% Similarity=-0.064 Sum_probs=84.2
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
+..++.+++ .|.+|+..+. +-.+.|.|+++.++|+++-+++.+.+...-..+..++.....+.++.+.|-.....-.
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~--~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDL--QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEET--TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHhhcCceEEEECC--CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 456677775 7888888774 5589999999999999999999999988555566666666667777777765444444
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 84 ~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 84 MLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred EEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 567788877774 4666778999999888777754
No 12
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=97.73 E-value=0.00017 Score=71.13 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=70.3
Q ss_pred cccccCccCceeEEEEeeeee----cC--CeEEEEEeecCCCCCCCCCCCCCCcceeee---cCCceeEeecCC------
Q 008019 4 YAPTTLAPARDFWLLRYTSVL----ED--GSLVVCERSLNNTQNGPSMPQAPHFVRAEM---LPSGYLIRPCEG------ 68 (581)
Q Consensus 4 ~~~SpLvp~Ref~fLRYc~~l----e~--G~wvV~DvSld~~~~~~~~~~~~~~~r~~~---lPSGcLIq~~~n------ 68 (581)
..|.|+ ..|||.++|++++. ++ +.++|+..|++. +..|+...++|++. +.+|++|++..+
T Consensus 127 ~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~----~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~ 201 (255)
T 2e3n_A 127 KRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH----DSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISR 201 (255)
T ss_dssp CCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCC----TTSCCCSSSEECEEEEEEEEEEEEC---CCCCCCG
T ss_pred ecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCC----CCCCCCCCCEEEEEEeeeeeeeEeccCCCCccccc
Confidence 345664 89999999999988 33 599999999974 23455568899995 679999998733
Q ss_pred --CceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHHH-hhh
Q 008019 69 --GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 113 (581)
Q Consensus 69 --G~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaLR-~~e 113 (581)
+.|+||++-|+|..- .+|.- +++.....+.-..+..|| +++
T Consensus 202 ~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 202 DNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp GGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHH
Confidence 579999999999774 46642 333333445555666664 454
No 13
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.70 E-value=0.00031 Score=60.76 Aligned_cols=112 Identities=6% Similarity=-0.064 Sum_probs=83.9
Q ss_pred HHHHHHh-cCCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 465 SILKTLW-HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 465 ~~~~~L~-~ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
..++.++ +.|.+|+..+.+ +|-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-.....-.
T Consensus 35 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 35 YSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp CHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 4556666 489999888763 36789999999999999999999999977666565555555566666666654444444
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 115 ~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 115 NYRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EEcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 567889998885 4556678899999888877755
No 14
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.59 E-value=0.00059 Score=56.71 Aligned_cols=103 Identities=6% Similarity=0.003 Sum_probs=69.9
Q ss_pred CCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEE
Q 008019 474 SDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPIS 552 (581)
Q Consensus 474 p~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ 552 (581)
+++|+-.+.. +|-.++|+|.++.+|++|+-+|+.+-+.+.-..+...++..+.+.++.++|-.....-....+.|+.|+
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~ 82 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFW 82 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEE
Confidence 5566666644 567899999999999999999999987655443333333333444444444332223345679999998
Q ss_pred EeeeEEeEeecCCCceEEEEEeecc
Q 008019 553 YERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 553 ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++- .+=-+.|++|+..+...++.+
T Consensus 83 ~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 83 NLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEE-EEEEEECCCCCEEEEEEEEEe
Confidence 865 455678999998887766644
No 15
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.56 E-value=0.00049 Score=60.93 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=82.7
Q ss_pred HHHHHHhc-CCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 465 SILKTLWH-HSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
..++.+++ .|.+|+..+.+ +|=.++|.|+++.+||+++-+++.+.+...-..+..+......+.++.+.|-.....-.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 34566674 88988888765 34789999999999999999999999977666666656566666677766654443344
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 87 ~~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 87 NYRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp EECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EEcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 567899998875 3455677899998887776654
No 16
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.56 E-value=0.0009 Score=55.83 Aligned_cols=109 Identities=14% Similarity=-0.013 Sum_probs=74.5
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe-
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG- 541 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G- 541 (581)
+..++.+++ +|++|+..+. +=.+.|.|+++.++|+|+-+|+.+.+...-..+..+....+.+.++.++|- .+.|
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~e 79 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDL--KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKK--PWSGV 79 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTC--CEEEE
T ss_pred HHHHHHHHHhCCCeEEEECC--CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCC--CEEEE
Confidence 355667774 8999988764 568999999999999999999999875543333333333334444555443 2223
Q ss_pred -eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 542 -ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 542 -vRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
....+.|+.++++- .+=.+.|++|...+.-.++.+
T Consensus 80 ~~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 80 LVNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 34578999988754 445577999998887666644
No 17
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.51 E-value=0.00035 Score=55.84 Aligned_cols=109 Identities=7% Similarity=-0.047 Sum_probs=75.7
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
+.++.+++ .|.+|+..+ .+=.+.|+|+++.++|+++-+++.+.+...-. +..++.....+.++.+.+-.....-..
T Consensus 3 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFD--REMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEE--TTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEc--CCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE
Confidence 45667774 799988876 56789999999999999999999998876555 444455556666666644333222134
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 80 ~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 80 VRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 56778877764 3445678999999888777654
No 18
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.48 E-value=0.0012 Score=52.42 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=77.9
Q ss_pred HHHHHhc-CCCeeeecC-CCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 466 ILKTLWH-HSDAVLCCS-LKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 466 ~~~~L~~-ap~avl~h~-~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
.++.+++ .|.+|+..+ ...+-.+.|.|+++.++|+++-+++.+.+...-..+.........+.++...|-.....=..
T Consensus 7 ~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T 2z6d_A 7 ELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLN 86 (130)
T ss_dssp CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEE
Confidence 3456664 788888777 23567899999999999999999999988766655555455455555556555433322234
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 87 ~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 87 YKKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp ECTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 5677887777 44666778999998888777654
No 19
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.47 E-value=0.00069 Score=64.84 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHHHHHh-cCCCeeeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 465 SILKTLW-HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 465 ~~~~~L~-~ap~avl~h~~~~-dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
..++.++ +.|.+|+..+.+. |=.++|.|+++.++|+++-+|+.+.+...-..+...+.....+.++.+.|-.....-.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 142 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEIL 142 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 5567777 4899999887754 6789999999999999999999999987766666655555566666666654444445
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+.|+.|+++- .+-.+.|++|...|...++.+
T Consensus 143 ~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 143 NYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 5688999998854 555678999999888777654
No 20
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.44 E-value=0.00095 Score=57.54 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=82.6
Q ss_pred hHHHHHHhc-CCCeeeecCCCCC-ceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 008019 464 ESILKTLWH-HSDAVLCCSLKAL-PVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 541 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~d-PvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 541 (581)
+..++.+++ .|.+|+..+.+.+ ..++|+|+++.++|+++-+++.+.+...-..+..+......+.++...|-.....-
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 456677774 7888888775432 29999999999999999999999988766666555555566666666665443333
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 542 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 542 vRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 104 ~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 104 RNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 4457788888774 4556677899998887777654
No 21
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.41 E-value=0.002 Score=49.77 Aligned_cols=93 Identities=8% Similarity=-0.048 Sum_probs=63.2
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEe
Q 008019 484 ALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKV 561 (581)
Q Consensus 484 ~dPvF~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v 561 (581)
++-.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....-....+.|+.++++- .+-.+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLV-DVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEE-EEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEE-EEEEe
Confidence 467899999999999999999999988 555544444333334444555555433323234577888887743 44567
Q ss_pred ecCCCceEEEEEeecc
Q 008019 562 LNEEENAHCICFMFIN 577 (581)
Q Consensus 562 ~D~~g~~~GqAa~F~~ 577 (581)
.|++|...|...++.+
T Consensus 91 ~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KNEDGAVIMFILNFEV 106 (110)
T ss_dssp ECTTCCEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEEe
Confidence 7888988887766654
No 22
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.30 E-value=0.002 Score=55.06 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=72.2
Q ss_pred HHhcCCCeeeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCccc-----------hhHHhhhhHHHHHhccc
Q 008019 469 TLWHHSDAVLCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSG-----------RKTLCSEFPQIMQQGFM 536 (581)
Q Consensus 469 ~L~~ap~avl~h~~-~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~-----------r~er~~lL~~v~~qG~~ 536 (581)
.+++++.+|+..+. ..+=.++|+|+++.+||+++-+|+.+.+...-..+.. ..+....+.+..++|-.
T Consensus 30 ~~~~~~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 30 GPVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp CSCCTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred HhhcCCccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 44566777777653 2466899999999999999999999998765544431 33333344445555443
Q ss_pred cCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 537 CLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 537 ~~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
....-....+.|+.++++- .+--+.|++|...|...++.
T Consensus 110 ~~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp EEEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred eEEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 3323334578899988753 45567799999888776664
No 23
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.29 E-value=0.0025 Score=52.33 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCc
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iSs~Grr 550 (581)
++++.|+-++. |=.++|.|.+..++++|+-+|+.+.+...-..|.+++.-.+.+.++.+.|-.... =.| +.+.|+.
T Consensus 7 ~~~~~i~~~d~--~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~ 83 (117)
T 3f1p_A 7 DSKTFLSEHSM--DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSG-QYRMLAKHGGY 83 (117)
T ss_dssp GGGEEEEEECT--TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECC-CEEEECTTSSE
T ss_pred CCccEEEEECC--CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeee-EEEEEecCCCE
Confidence 35677777654 6689999999999999999999999887777788888888888888887765444 344 4788988
Q ss_pred EEEeeeEEeEeecC-CCceEEEEEeec
Q 008019 551 ISYERAVAWKVLNE-EENAHCICFMFI 576 (581)
Q Consensus 551 f~ie~a~vW~v~D~-~g~~~GqAa~F~ 576 (581)
++++- .+--+.|+ +|...+.-.++.
T Consensus 84 ~w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 84 VWLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEE-eeEEEECCCCCCceEEEEEee
Confidence 88864 44456677 788777655543
No 24
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=97.27 E-value=0.00069 Score=56.23 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=67.5
Q ss_pred HHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccch-hHHhhhhHHHHHhccccCCCeeE
Q 008019 466 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGR-KTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 466 ~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r-~er~~lL~~v~~qG~~~~y~GvR 543 (581)
.++.+++ +|.+|+. + .+=.+.|+|+++.+||+++-+++.+.+...-.++... +.....+.+..++|-.....-..
T Consensus 4 ~~~~~~~~~~~~i~~-~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp CHHHHHHHCSSEEEE-E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred hHHHHHhcCCceEEE-e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 3567774 8998863 3 3678999999999999999999999987655443222 22233333444444322222234
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
..+.|+.|+++- ....++.+|...|.-.+|.
T Consensus 81 ~~~dG~~~~~~~--~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 81 KRAGGELFWCHV--TGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp ECTTSCEEEEEE--EEEESSTTSTTSSEEEEEE
T ss_pred EeCCCCEEEEEE--EEEECCCCCCceeEEEEEE
Confidence 578999998863 3455577665555555553
No 25
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=97.13 E-value=0.0025 Score=53.86 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred HHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC-C---e
Q 008019 467 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ-S---G 541 (581)
Q Consensus 467 ~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~---G 541 (581)
++.+++ +|++|+..+. +=.+.|.|+++.+||+|+-+|+.+.+...-.++..++.....+.+..+.|-.... . -
T Consensus 18 ~~~l~~~~~d~i~~~d~--~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 95 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT--DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVV 95 (130)
T ss_dssp HHHHHTTCSSEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEE
T ss_pred HHHHHhhCcCeEEEECC--CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEE
Confidence 456674 8999988764 5579999999999999999999999876655555555555666666666543211 1 1
Q ss_pred eEEccCCCcEEEeeeE
Q 008019 542 ICLSSMGRPISYERAV 557 (581)
Q Consensus 542 vRiSs~Grrf~ie~a~ 557 (581)
..+.+.|+.|.++-.+
T Consensus 96 ~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 96 SGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEE
Confidence 3468999999987543
No 26
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=97.13 E-value=0.0016 Score=54.61 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=61.2
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
++.++.+|+ +|++|+..+. +=.+.|.|+++.+|++|+-+|+.+.+...-.++..+......+..+.+.+. ..+.-.
T Consensus 10 e~~~~~l~e~~~d~i~~~d~--~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 86 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDA--EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LREERT 86 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHHhcCCceEEEECC--CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEEEEE
Confidence 466788885 8999988775 458999999999999999999999976543333222222234444443332 223334
Q ss_pred EEccCCCcEEEeee
Q 008019 543 CLSSMGRPISYERA 556 (581)
Q Consensus 543 RiSs~Grrf~ie~a 556 (581)
.+.+.|+.++++-.
T Consensus 87 ~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 87 VWTRNGDQLTVELS 100 (117)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEecCCCEEEEEEE
Confidence 56899999887653
No 27
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=97.12 E-value=0.0047 Score=52.23 Aligned_cols=104 Identities=9% Similarity=-0.054 Sum_probs=63.9
Q ss_pred HHh-cCCCeeeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEcc
Q 008019 469 TLW-HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSS 546 (581)
Q Consensus 469 ~L~-~ap~avl~h~~~~-dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs 546 (581)
.++ ++|++|+..+.+. |=.+.|.|+++.+||+|+-+|+.+.+...-..+....+....+.+..++|-...+.-....+
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 445 4789998887653 55899999999999999999999987654433333333233444455554332222234678
Q ss_pred CCCcEEEeeeEEeEeecCCCceEEEEEee
Q 008019 547 MGRPISYERAVAWKVLNEEENAHCICFMF 575 (581)
Q Consensus 547 ~Grrf~ie~a~vW~v~D~~g~~~GqAa~F 575 (581)
.|+.|+++-.+. .+.|++ ..+...++
T Consensus 83 dG~~~~~~~~~~-~~~~~~--~~~~~~~~ 108 (132)
T 2pr5_A 83 DGTMFWNELNID-PMEIED--KTYFVGIQ 108 (132)
T ss_dssp TSCEEEEEEEEE-EEEETT--EEEEEEEE
T ss_pred CCCeeeeEEEEE-eccCCC--eeEEEEEE
Confidence 999998864332 344554 44444444
No 28
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.95 E-value=0.0023 Score=55.36 Aligned_cols=110 Identities=7% Similarity=-0.008 Sum_probs=77.7
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
++.++.+++ .|.+|+..+ ..+-.+.|.|+++.++|+++ ++.+.+..--.++..++.....+.++.+.|-.......
T Consensus 16 ~~~~~~~~~~~~~~i~~~d-~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLE-GPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEE-TTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEE-CCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 456677774 899888776 24668999999999999999 88888876666666666667788888887765443334
Q ss_pred EE--ccC---CCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CL--SSM---GRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 Ri--Ss~---Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 93 ~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 93 RLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 33 322 444444 33455677999999998877754
No 29
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.93 E-value=0.0091 Score=48.26 Aligned_cols=105 Identities=8% Similarity=-0.023 Sum_probs=69.1
Q ss_pred cCCCeeeecCCCC-CceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeEEccCC
Q 008019 472 HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMG 548 (581)
Q Consensus 472 ~ap~avl~h~~~~-dPvF~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~G 548 (581)
+.|.+|+..+.+. +=.+.|.|+++.++|+++-+++.+.+ .+.-..+..+......+.++...|-.....=....+.|
T Consensus 27 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 106 (138)
T 2l0w_A 27 GQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDG 106 (138)
T ss_dssp TTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTS
T ss_pred cCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCC
Confidence 3788888877532 56899999999999999999999988 55544444433333444444444432222222346778
Q ss_pred CcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 549 RPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 549 rrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+.++++- .+-.+.|++|...|...+|.+
T Consensus 107 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 107 SCFLCLV-DVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp CEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 8877643 444567888988887766654
No 30
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.92 E-value=0.0027 Score=57.67 Aligned_cols=110 Identities=7% Similarity=0.001 Sum_probs=79.9
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
++.++.+++ .|++|+..+. .|-.+.|+|+++.++|+++ ++.+.+..--.++..++.....+.++.+.|-......+
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 112 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEG-PDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 112 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEET-TTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEC-CCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccce
Confidence 466777885 8999888762 4678999999999999999 89998877666666665566788888888866554445
Q ss_pred EEccC-----CCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSM-----GRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~-----Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++... |+..+++ ..+-.+.|++|...|...++.|
T Consensus 113 ~~~~~~~~~gg~~~~~~-~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 113 RLQTDYDGSGVEERYFD-FVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEC--------CCEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEeeccCCCCccEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 55221 5555553 4555678999999998877754
No 31
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.90 E-value=0.012 Score=47.85 Aligned_cols=105 Identities=6% Similarity=-0.009 Sum_probs=74.0
Q ss_pred cCCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 008019 472 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grr 550 (581)
..|.+|+..+.. ++-.+.|+|+++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+.
T Consensus 10 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 89 (146)
T 2v0u_A 10 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 89 (146)
T ss_dssp GSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcE
Confidence 367777777652 2568999999999999999999999988766656555555555556666554433333445677887
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 551 ISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 551 f~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++++ ..+-.+.|++|...|...++.+
T Consensus 90 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 90 FWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 7764 3555677889998887766643
No 32
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.84 E-value=0.062 Score=51.75 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCC
Q 008019 131 PAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVP 210 (581)
Q Consensus 131 sa~l~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvp 210 (581)
.+...++++..+..|-.-+.. ..+|..... .++|+|..+... + .+ |-+ .++...+ ++|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~~--~~gv~v~~~~~~----~--------~~---~~~--~k~~~~v-~~~ 78 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICRE--GNGVSVSWRPSV----E--------FP---GNL--YRGEGIV-YGT 78 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEEC--CSSEEEEEEECS----S--------SS---SEE--EEEEEEE-SSC
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEEe--CCCEEEEEEccC----C--------CC---CcE--EEEEEEE-CCC
Confidence 346999999999988876643 478997753 567999888763 1 12 333 4566666 799
Q ss_pred hhHHHHHH--hh--hchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccC
Q 008019 211 PAILLRFL--RE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDM 286 (581)
Q Consensus 211 p~~lf~FL--Rd--~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~ 286 (581)
|+.||++| .| .|.+||..... .+.+..|. .. ..|++.-. .+.-..-
T Consensus 79 ~~~v~~~l~~~d~~~r~~Wd~~~~~-----------------------~~vle~i~----~~--~~i~~~~~-~~~~~~~ 128 (231)
T 2r55_A 79 LEEVWDCVKPAVGGLRVKWDENVTG-----------------------FEIIQSIT----DT--LCVSRTST-PSAAMKL 128 (231)
T ss_dssp HHHHHHHHCC--CCSHHHHCTTCSE-----------------------EEEEEECS----SS--EEEEEEEC-CCBTTTT
T ss_pred HHHHHHHHHhhCcchhhhhccccce-----------------------eEEEEEcC----CC--EEEEEEEe-ccccCCc
Confidence 99999999 75 99999976321 33444442 11 23344211 0110112
Q ss_pred CCCCceEEEeeccCCCCCCCCceeE-EEEeeccCCC----CCC--CccccCCcEEecC
Q 008019 287 IMPSDIFLLQLCSGVDENAVGNCAE-LVFAPIDASF----SDD--APIIPSGFRIIPL 337 (581)
Q Consensus 287 ~~~~~~liLQe~s~~De~a~G~~s~-vVyAPVD~~d----s~~--vpLLPSGF~IlPd 337 (581)
+-+||..+|.-+ ..++ .| ++ ++.-.||-+. +.. +.++|+||.|-|.
T Consensus 129 v~~RDfv~~r~~-~~~~--~g--~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 129 ISPRDFVDLVLV-KRYE--DG--TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp BCCEEEEEEEEE-EECT--TS--CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred cCCCeEEEEEEE-EEcC--CC--EEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 456788888775 3442 23 45 4577777542 222 2378899999986
No 33
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.83 E-value=0.0045 Score=51.26 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=71.6
Q ss_pred HHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHH-hccccCCCeeE-E
Q 008019 468 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQ-QGFMCLQSGIC-L 544 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~-qG~~~~y~GvR-i 544 (581)
+.|. ++|+.|..++. |=.|+|.|.++.++++|+-+|+.+.+...-..|.+++.-.+.+.++.+ .|-...+ =.| .
T Consensus 5 ~ll~e~~~d~i~~~d~--~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNI--EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV-MFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECT--TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEE-EEEEE
T ss_pred cceecCCCceEEEECC--CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccE-EEEEE
Confidence 3444 47888888764 668999999999999999999999987666667777766666666653 3322221 223 4
Q ss_pred ccCCCcEEEeeeEEeEeecC-CCceEEEEEeec
Q 008019 545 SSMGRPISYERAVAWKVLNE-EENAHCICFMFI 576 (581)
Q Consensus 545 Ss~Grrf~ie~a~vW~v~D~-~g~~~GqAa~F~ 576 (581)
.+.|+.++++- .+--+.|+ +|...+...++.
T Consensus 82 ~~dG~~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 82 SKNQEWLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp CTTSCEEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred ecCCCEEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 78898888863 33445676 677777655543
No 34
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.78 E-value=0.009 Score=59.19 Aligned_cols=105 Identities=6% Similarity=-0.008 Sum_probs=78.3
Q ss_pred cCCCeeeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 008019 472 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~-~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grr 550 (581)
+.|++|+..+.. ++=.++|+|+++.+|++|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|+.
T Consensus 19 ~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 98 (332)
T 2wkq_A 19 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 98 (332)
T ss_dssp GCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCE
Confidence 578888887652 2678999999999999999999999988765555555555555566666654333333456788999
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 551 ISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 551 f~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
++++ ..+-.+.|++|...|...++.+
T Consensus 99 ~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 99 FWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 8885 4666788999999998877754
No 35
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.75 E-value=0.016 Score=46.57 Aligned_cols=84 Identities=21% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
.++.++ ++|++|+..+. +=.+.|.|+++.+||+++-+++.+++...-.++...+. ++.+.+.+. ..+.-...
T Consensus 14 ~~~~~~~~~~~~i~~~d~--~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~~ 86 (118)
T 3olo_A 14 FAHYLINNAVEASFCLGD--NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRYR 86 (118)
T ss_dssp HHHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEEE
T ss_pred HHHHHHhcCCceEEEECC--CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEEE
Confidence 345566 48999988874 56899999999999999999999998765543332222 444444443 23344456
Q ss_pred ccCCCcEEEeee
Q 008019 545 SSMGRPISYERA 556 (581)
Q Consensus 545 Ss~Grrf~ie~a 556 (581)
.+.|+.++++-.
T Consensus 87 ~~~g~~~~~~~~ 98 (118)
T 3olo_A 87 SQSGRIFLVEMS 98 (118)
T ss_dssp CTTCCEEEEEEE
T ss_pred ccCCCEEEEEEE
Confidence 789998887643
No 36
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.009 Score=48.66 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=67.1
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 544 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 544 (581)
+.+.++ +.|.+|+..+.+ =.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-+++
T Consensus 8 l~~~il~~~~~~i~~~D~~--g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 8 LPSAILNNMVTATLILDDG--LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHHCSSEEEEECTT--CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred cHHHHHhhcCceEEEECCC--CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 445566 489999988764 47999999999999999999999876544433221 2334556666553211112333
Q ss_pred ccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 545 SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 545 Ss~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
.+.|+.+.++ ..+-.+.| +|. .|.-++|.+
T Consensus 84 ~~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 84 VVDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp EETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred ecCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 3568776653 45556667 776 566666643
No 37
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.60 E-value=0.027 Score=52.85 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=72.7
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCC--
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGR-- 549 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Gr-- 549 (581)
+++.+|+..+ .+-.++|.|+++.+|++|+-+|+.+.+.+.-..+...++..+.+.+..+.|-.....=....+.|+
T Consensus 119 ~~~~~i~~~d--~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~ 196 (227)
T 3ewk_A 119 ANSEMILLTD--RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAP 196 (227)
T ss_dssp TCCSEEEEEC--TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSS
T ss_pred cCcCeEEEEc--CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcC
Confidence 5788887765 567899999999999999999999998766555544444455555555555433333345667776
Q ss_pred ----cEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 550 ----PISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 550 ----rf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
.|+++- .+=-+.|++|...|--.++.+
T Consensus 197 ~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 197 HDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp SCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred cccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 666643 455678999999888777653
No 38
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=96.54 E-value=0.016 Score=47.85 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=59.9
Q ss_pred CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC-Ce---eEEccCC
Q 008019 473 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ-SG---ICLSSMG 548 (581)
Q Consensus 473 ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G---vRiSs~G 548 (581)
+|++|+..+ .+=.+.|.|+++.+||+|+-+|+.+.+...-.++..+......+.+..+.|-.... .+ ....+.|
T Consensus 2 ~~d~i~~~d--~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 79 (119)
T 2vv6_A 2 IPDAMIVID--GHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp CCCEEEEEE--TTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CcceEEEEC--CCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCC
Confidence 577887766 35689999999999999999999999877655555555555666676666543211 11 2357999
Q ss_pred CcEEEeeeE
Q 008019 549 RPISYERAV 557 (581)
Q Consensus 549 rrf~ie~a~ 557 (581)
+.|.++-.+
T Consensus 80 ~~~~~~~~~ 88 (119)
T 2vv6_A 80 TTFPMHLSI 88 (119)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999987544
No 39
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=96.50 E-value=0.021 Score=45.23 Aligned_cols=109 Identities=9% Similarity=-0.007 Sum_probs=70.7
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc--ccccCccchhHHhhhhHHHHHhccccCCCe
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL--EKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 541 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~G 541 (581)
..++.+++ +|.+|+..+.+. =.+.|.|.++.++|+++-+++.+.+. .....+.+++.-...+.++. .|-... .-
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~-~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~e 87 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTADL-SEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD-VE 87 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETTS-SCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-EE
T ss_pred HHHHHHHhcCCceEEEEEcCC-CcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-EE
Confidence 45566664 888888777641 37899999999999999999998873 33344555554445555533 332221 12
Q ss_pred eEE-ccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 542 ICL-SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 542 vRi-Ss~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+|+ .+.|+.++++- .+-.+.|++|...+...++.+
T Consensus 88 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 88 CRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp EEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 333 45677766643 445577888988887766643
No 40
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.46 E-value=0.013 Score=54.92 Aligned_cols=92 Identities=7% Similarity=-0.077 Sum_probs=67.1
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 008019 484 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 563 (581)
Q Consensus 484 ~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D 563 (581)
.+=.++|+|+++.+||+|+.+|+.+.+.+.-..+...++..+.+.+....|-.....-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 456799999999999999999999998776555444444444444555566554444456789999999854 4556779
Q ss_pred CCCceEEEEEeec
Q 008019 564 EEENAHCICFMFI 576 (581)
Q Consensus 564 ~~g~~~GqAa~F~ 576 (581)
++|...|...++.
T Consensus 86 ~~g~~~~~~~~~~ 98 (227)
T 3ewk_A 86 NAGKPRQYISIRR 98 (227)
T ss_dssp SSSCEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
Confidence 9999888766654
No 41
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=96.45 E-value=0.012 Score=47.76 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=70.9
Q ss_pred HHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 008019 469 TLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 547 (581)
Q Consensus 469 ~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~ 547 (581)
.++ ..|++|+..+. +=.++|+|.++.++|+++-+++.+.+..--..+..++.....+.++.+.+.. .+.-....+.
T Consensus 3 ~l~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (126)
T 3mjq_A 3 NFLETIEDMILIINR--EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKE 79 (126)
T ss_dssp TTGGGCSSEEEEEET--TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTT
T ss_pred hHHhhCCceEEEEeC--CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccC
Confidence 344 47888888775 5689999999999999999999999887767777777777788888776654 2222234678
Q ss_pred CCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 548 GRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 548 Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
|+.++++- .+..+.+ ++ ..|...++.
T Consensus 80 g~~~~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 80 GTSIPAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp SCEEEEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred CCEEEEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 88887753 3333333 22 344444443
No 42
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=96.44 E-value=0.013 Score=53.79 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=76.9
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc------
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC------ 537 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~------ 537 (581)
..++.+++ .|++|+.-+. |=.++|.|+++.++++++-+|+++-+..--.++ .++.-.+.+.+|.+.|--.
T Consensus 22 ~~l~~il~~~~~gi~v~D~--~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~ 98 (152)
T 3mxq_A 22 LLLSELLDQLSFALCIVRN--DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQ 98 (152)
T ss_dssp HHHHHHHHHHCCEEEEEET--TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCS
T ss_pred HHHHHHHhcCCCCEEEEcC--CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeeccc
Confidence 34455664 7888887764 778999999999999999999999888766666 5555566678888876321
Q ss_pred ------CCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 538 ------LQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 538 ------~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+-.+++.|++ ++-+.+++-|.|++|.+.|.++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 99 KPHLLPFKSSRPVSGEEEQ-MYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SSCSSCC----------CC-EEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ccccccccccCCCCCCCcE-EEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 1112234555654 45578999999999999999988755
No 43
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=96.38 E-value=0.01 Score=48.41 Aligned_cols=104 Identities=11% Similarity=0.080 Sum_probs=61.3
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
..++.+++ .|++|+..+. +-.+.|.|+++.++|+++-+++.+.+..--.++...+.......++.+.|-.. ..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 92 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTT--NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----RS 92 (125)
T ss_dssp -------CCSCCEEEEEET--TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----EE
T ss_pred HHHHHHHhcCCCeEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----Ee
Confidence 44566774 7999988875 56999999999999999999999999877774444444444446666666322 22
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
....| ..+++ ..+-.+ .++|...|...++.+
T Consensus 93 ~~~~~-~~~~~-~~~~p~-~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 93 EDAVG-GRHYH-NQYIPV-DSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEET-TEEEE-EEEEES-STTTTTTEEEEEEEE
T ss_pred EcCCC-cEEEE-EEEEeE-ecCCCeEEEEEEEec
Confidence 22331 33333 222223 344555666555543
No 44
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=96.29 E-value=0.013 Score=47.06 Aligned_cols=109 Identities=9% Similarity=-0.081 Sum_probs=70.0
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcC--ccccccCccchhHHhhhhHHHHHhccccCCCee
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDI--TLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 542 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~l--psr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 542 (581)
.++.+. .+|.+|...+. +-.++|.|.++.++|+++-+++.+. .......|.+++.-...+.++.+.|-.....--
T Consensus 8 ~l~~~~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~ 85 (125)
T 3nja_A 8 LLHTAESDAGIGSWVLHM--ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYR 85 (125)
T ss_dssp ---------CCEEEEEET--TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred HHHHHHHhCCeeEEEEEc--CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344555 47888877665 4567899999999999999998872 222334566777777778888877754332222
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 543 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 543 RiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
-..+.|+.++++-... -+.|++|...+...++.+
T Consensus 86 ~~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 86 IVRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp EECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred EECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 2356788777765433 567889998887766644
No 45
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=96.24 E-value=0.025 Score=46.27 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=64.9
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhc-cccCCCeeE-EccCCC
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQG-FMCLQSGIC-LSSMGR 549 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG-~~~~y~GvR-iSs~Gr 549 (581)
++|+.|+.++. +=.+.|.|+++.++|+++-+|+.+.+...-..|.+++...+.+.++.+.+ -.... =.| +.+.|+
T Consensus 11 ~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~ 87 (121)
T 2kdk_A 11 KPTEFITRFAV--NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTD-SYKFRAKDGS 87 (121)
T ss_dssp CSSEEEEEECT--TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEE-EEEEECSSSC
T ss_pred CCccEEEEECC--CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccE-EEEEEEcCCC
Confidence 57888888775 56899999999999999999999987654455666666666666666543 21111 123 478999
Q ss_pred cEEEeeeEEeEeecCCC-ceEEE
Q 008019 550 PISYERAVAWKVLNEEE-NAHCI 571 (581)
Q Consensus 550 rf~ie~a~vW~v~D~~g-~~~Gq 571 (581)
.++++- .+-.+.|++| ...+.
T Consensus 88 ~~~~~~-~~~~~~d~~~~~~~~~ 109 (121)
T 2kdk_A 88 FVTLKS-QWFSFTNPDTKELEYI 109 (121)
T ss_dssp EEEEEE-EEEEEECCSSSCEEEE
T ss_pred EEEEEE-EEEEEECCCCCeeeEE
Confidence 888863 2334567654 44433
No 46
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=96.12 E-value=0.024 Score=49.78 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccc------cC
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFM------CL 538 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~------~~ 538 (581)
.++.++ ..+++|+.-+. +=.++|+|+||.+||+++-+++.+.+...-.++..++.-..++.+..+.|-. ..
T Consensus 8 ~l~~i~~~~~d~i~~~D~--~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 8 TIELFIQHLTEAMILVNA--NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHTTCSSEEEEEET--TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHhcCCceEEEECC--CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 345566 48999998875 5589999999999999999999999977666666665555555554332211 00
Q ss_pred -CCeeEEccCCCcEEEee
Q 008019 539 -QSGICLSSMGRPISYER 555 (581)
Q Consensus 539 -y~GvRiSs~Grrf~ie~ 555 (581)
..-....+.|+.|.++-
T Consensus 86 ~~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 86 AQETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEE
Confidence 11123467899999864
No 47
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=96.07 E-value=0.18 Score=49.54 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=97.8
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHH-HHHHhhhchhhhhcccc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL-LRFLREHRSEWADSSID 231 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~l-f~FLRd~RseWd~l~~~ 231 (581)
..++|..... .++|+|..++..+ |.+ +-.-++..-+ +.+|+.+ +++|.| |.+||....
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~-----------~~~-----~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~~~- 106 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD-----------GNP-----LKLWKASVEV-EAPPSVVLNRVLRE-RHLWDEDFV- 106 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS-----------SCC-----CCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTTBC-
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC-----------CCC-----cEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhhhc-
Confidence 4568987643 5689999988621 112 3344667777 5666555 578888 999998642
Q ss_pred hhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCceeE
Q 008019 232 AYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAE 311 (581)
Q Consensus 232 ~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s~ 311 (581)
. .+.+-.|. ..+ .|++..-..+ -.+-+||..++.-. ..|. ..| ++
T Consensus 107 --------------------~--~~vle~id----~~~--~I~y~~~~~p---~p~~~RDfv~~r~~-r~~~-~~g--~~ 151 (237)
T 2pso_A 107 --------------------Q--WKVVETLD----RQT--EIYQYVLNSM---APHPSRDFVVLRTW-KTDL-PKG--MC 151 (237)
T ss_dssp --------------------C--CEEEEEEE----TTE--EEEEEEECCS---SSCCCEEEEEEEEE-ESCC-GGG--CE
T ss_pred --------------------e--EEEEEEcC----CCc--EEEEEEecCC---CCcCCeEEEEEEEE-EEEC-CCC--EE
Confidence 1 34444442 122 3433321111 12455788777763 2331 123 34
Q ss_pred EE-EeeccCCC-C--C--CCccccCCcEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCeeEEEeee
Q 008019 312 LV-FAPIDASF-S--D--DAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQ 385 (581)
Q Consensus 312 vV-yAPVD~~d-s--~--~vpLLPSGF~IlPd~~~~dg~~~~~tldlas~le~gs~~~~~~g~~~~~~~~~gSlLTvaFQ 385 (581)
+| .-.|+-++ | . -+..+|+||.|-|++ .++|.+|.-+|
T Consensus 152 vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~------------------------------------~~~t~vt~~~~ 195 (237)
T 2pso_A 152 TLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG------------------------------------SGKSRLTHICR 195 (237)
T ss_dssp EEEEEECCCTTCCCCSSEECCEEEEEEEEEECS------------------------------------TTCEEEEEEEE
T ss_pred EEEEEcccCCCCCCCCcEEEEEeccEEEEEECC------------------------------------CCCEEEEEEEE
Confidence 44 44555431 1 1 234678888888851 13578887777
Q ss_pred ccccccchhhHHHHHhhhhhHHHHHHHHHHHhcCC
Q 008019 386 FAFEMHLQENVASMARQYVRGIIASVQRVALALSP 420 (581)
Q Consensus 386 il~~s~~~~sVa~~a~~~V~~vvstVqrIk~AL~~ 420 (581)
+=........+ +.-+......++.+++.++..
T Consensus 196 ~Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 196 IDLKGHSPEWY---SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ECCSSSCTTTT---TTHHHHHHHHHHHHHHHTTSC
T ss_pred eCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 76665444433 222344555689999999853
No 48
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=96.05 E-value=0.019 Score=46.00 Aligned_cols=110 Identities=9% Similarity=-0.009 Sum_probs=74.9
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc--ccccCccchhHHhhhhHHHHHhccccCCC
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL--EKIFDDSGRKTLCSEFPQIMQQGFMCLQS 540 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~ 540 (581)
++.++.+.+ +|.+|...+. +-.++|.|.++.++|+++-+++.+.+. ..-..|.+|+.-.+.+.++.+.|-.....
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV--SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT--TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc--CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 455677775 7888766654 567889999999999999999877654 22345667777777777777766533322
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 541 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 541 GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
---+.+.|+..+++. ..=-+.|++|...+...++.
T Consensus 81 ~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 81 YRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 222367788777753 33346788998876655543
No 49
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=95.81 E-value=0.22 Score=46.92 Aligned_cols=58 Identities=16% Similarity=0.326 Sum_probs=43.0
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
..++|..... .++|+|..++.. + .++..-++...++++||+.|+++|.| .|.+||...
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~----~-------------~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~ 85 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDK----K-------------TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV 85 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEET----T-------------TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE
T ss_pred CCCCcEEEEE--CCCeEEEEeccC----C-------------CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 4568987754 347999888653 1 12445677777844999999999997 899999763
No 50
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=95.71 E-value=0.042 Score=45.19 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=51.0
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhh--cCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQ--DITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 541 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~--~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 541 (581)
..++.+++ +|++|+..+. |=.+.|.|+++.+||+|+-+|+. +.+..--.. +++...+.+.+....+ ...+..
T Consensus 17 ~~~~~l~e~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~e~ 91 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDA--DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKFEG 91 (126)
T ss_dssp HHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEEEE
T ss_pred HHHHHHHhhCCcEEEEEcC--CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-CcceEE
Confidence 44667774 8999988764 56899999999999999999994 443321122 2222111111111111 111223
Q ss_pred eEEccCCCcEEEe
Q 008019 542 ICLSSMGRPISYE 554 (581)
Q Consensus 542 vRiSs~Grrf~ie 554 (581)
....+.|+.++++
T Consensus 92 ~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 92 LYERRDGSTMSVE 104 (126)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEeCCCCEEEEE
Confidence 3458899999886
No 51
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=95.63 E-value=0.25 Score=47.60 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=97.5
Q ss_pred CCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcccc
Q 008019 154 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSID 231 (581)
Q Consensus 154 ~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~~ 231 (581)
..+|..... .++|+|..+... + . +|-+. ++..-+ ++||+.||++|.| .|.+||.....
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~----~--------~---~~~~~--k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~~~~ 101 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSE----E--------F---NGYLY--KAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMTS 101 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECS----S--------S---SSEEE--EEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEEE
T ss_pred CCCCEEEEE--CCCEEEEEEecc----C--------C---CceEE--EEEEEE-eCCHHHHHHHHhCcccccccccceee
Confidence 668986543 368999998653 1 1 23333 556666 7999999999998 89999976421
Q ss_pred hhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCceeE
Q 008019 232 AYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAE 311 (581)
Q Consensus 232 ~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s~ 311 (581)
.+.+.+| +..+ .|++....... -.-+-+||..++... ..+ .. +.+
T Consensus 102 -----------------------~~vle~i----d~~~--~I~y~~~~~~~-~~~v~~RDfv~~r~~-~~~--~~--~~v 146 (224)
T 1jss_A 102 -----------------------LDVLEHF----EENC--CVMRYTTAGQL-LNIISPREFVDFSYT-VGY--EE--GLL 146 (224)
T ss_dssp -----------------------EEEEEEC----STTE--EEEEEEECCBT-TTTBCCEEEEEEEEE-EEE--TT--EEE
T ss_pred -----------------------EEEEEEc----CCCe--EEEEEEccccc-CCCCCCCeEEEEEEE-EEc--CC--eEE
Confidence 3344444 2222 33332211010 011446788887763 222 12 456
Q ss_pred EEEeeccCCC--CCC--CccccCCcEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCeeEEEeeecc
Q 008019 312 LVFAPIDASF--SDD--APIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFA 387 (581)
Q Consensus 312 vVyAPVD~~d--s~~--vpLLPSGF~IlPd~~~~dg~~~~~tldlas~le~gs~~~~~~g~~~~~~~~~gSlLTvaFQil 387 (581)
++.-.||-++ +.+ +..+++||.|-|... + ..+|.+|.-+|+=
T Consensus 147 i~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~---------------------------~-------~~~t~vt~~~~~D 192 (224)
T 1jss_A 147 SCGVSVEWSETRPEFVRGYNHPCGWFCVPLKD---------------------------S-------PSQSLLTGYIQTD 192 (224)
T ss_dssp EEEEECCCCCCCTTSEECEECSEEEEEEEETT---------------------------E-------EEEEEEEEEECEE
T ss_pred EEEeeeecCCCCCCCEEEEecccEEEEEEcCC---------------------------C-------CCceEEEEEEEeC
Confidence 6666676443 222 236778888888510 0 1357788776666
Q ss_pred ccccchhhHHHHHhhhhhHHHHHHHHHHHhcC
Q 008019 388 FEMHLQENVASMARQYVRGIIASVQRVALALS 419 (581)
Q Consensus 388 ~~s~~~~sVa~~a~~~V~~vvstVqrIk~AL~ 419 (581)
........+...+ ....+..+++.++.++.
T Consensus 193 p~G~iP~~lvn~~--~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 193 LRGMIPQSAVDTA--MASTLANFYSDLRKGLR 222 (224)
T ss_dssp CCSCCCHHHHHHH--HHHHHHHHHHHHHHHTC
T ss_pred CCCCccHHHHHHH--HHHhHHHHHHHHHHHHh
Confidence 5553333333322 23445557777776653
No 52
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=95.57 E-value=0.064 Score=45.55 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=64.8
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc----CCC
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC----LQS 540 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----~y~ 540 (581)
.++.++ +.|.+|+..+ .+=.+.|.|+++.++|+++.+++.+.+...-..+..+......+..+...+... ...
T Consensus 41 ~~~~~l~~~~~~i~~~d--~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLIN--ENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 118 (167)
T ss_dssp CHHHHHHTCSSEEEEEC--TTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHHhCCCCEEEEC--CCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceE
Confidence 445666 4788888876 455899999999999999999999998877776666555556666666555331 112
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCce
Q 008019 541 GICLSSMGRPISYERAVAWKVLNEEENA 568 (581)
Q Consensus 541 GvRiSs~Grrf~ie~a~vW~v~D~~g~~ 568 (581)
-....+.|+.++++-... .+ +++|..
T Consensus 119 ~~~~~~~g~~~~~~~~~~-~~-~~~g~~ 144 (167)
T 1v9y_A 119 LQLEKKDGSKIWTRFALS-KV-SAEGKV 144 (167)
T ss_dssp EEEECTTSCEEEEEEEEE-EE-EETTEE
T ss_pred EEEEcCCCcEEEEEEEEE-EE-ecCCCE
Confidence 233567788777753322 23 555654
No 53
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=95.46 E-value=0.011 Score=48.58 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHH-Hhcccc---CCCeeEEccCC
Q 008019 473 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIM-QQGFMC---LQSGICLSSMG 548 (581)
Q Consensus 473 ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~-~qG~~~---~y~GvRiSs~G 548 (581)
.+++|+..+.+ +=.+.|+|++|.+||+|+-+|+.+.+...-..+..++....+..+.. ..|... ...-....+.|
T Consensus 7 ~~~~i~~~d~~-~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 85 (114)
T 1ll8_A 7 FNKAIFTVDAK-TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSG 85 (114)
T ss_dssp TTCEEEEEETT-TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTC
T ss_pred CCceEEEEECC-CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCC
Confidence 45688877643 14799999999999999999999998766555544433333332221 122211 11112357889
Q ss_pred CcEEEee
Q 008019 549 RPISYER 555 (581)
Q Consensus 549 rrf~ie~ 555 (581)
+.|.++-
T Consensus 86 ~~~~v~~ 92 (114)
T 1ll8_A 86 EKIPVSV 92 (114)
T ss_dssp CCEEEEC
T ss_pred CEEEEEE
Confidence 9998864
No 54
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=95.42 E-value=0.24 Score=49.72 Aligned_cols=150 Identities=14% Similarity=0.232 Sum_probs=89.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecc
Q 008019 127 WGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLL 206 (581)
Q Consensus 127 ~Gr~sa~l~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL 206 (581)
+-+.+ =+.|+.-.+.+...- ...++|..... .++|+|..+.. + | .++-++.+-+
T Consensus 43 w~~~~--~~~l~~~n~~al~~l---~~~~gW~~~~~--~~gv~Vy~~~~---------------~---~-~l~~k~~~~v 96 (258)
T 3fo5_A 43 WDPSN--QVYLSYNNVSSLKML---VAKDNWVLSSE--ISQVRLYTLED---------------D---K-FLSFHMEMVV 96 (258)
T ss_dssp CCGGG--HHHHHHHHHHHHHHH---HTCSCCEEEEE--ETTEEEEEEEC---------------S---S-CEEEEEEEEE
T ss_pred cCccc--ceecccCCHHHHHhh---hccCCCEEEec--CCCeEEEEEEC---------------C---C-ceEEEEEEEE
Confidence 66666 677776666555432 35689987643 46899988542 1 2 4566888889
Q ss_pred cCCChhHHHHHHhh--hchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcc
Q 008019 207 QDVPPAILLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYRE 284 (581)
Q Consensus 207 ~pvpp~~lf~FLRd--~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~ 284 (581)
++||+.||+.|.| .|.+||..... .+++.+|... +. |.+... +...
T Consensus 97 -~~~~~~v~~~L~D~~~R~~WD~~~~~-----------------------~~vle~id~~----~i--vY~~~~--p~~~ 144 (258)
T 3fo5_A 97 -HVDAAQAFLLLSDLRQRPEWDKHYRS-----------------------VELVQQVDED----DA--IYHVTS--PALG 144 (258)
T ss_dssp -SSCHHHHHHHHHCGGGGGGTCTTCCE-----------------------EEEEEEEETT----EE--EEEEEE--CCCT
T ss_pred -eCCHHHHHHHHhCchhHhHhhhhccE-----------------------EEEEEEcCCC----eE--EEEEec--CCcc
Confidence 7999999999987 89999986321 3444444222 23 334322 1111
Q ss_pred cCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCC----CCCCC--ccccCCcEEecC
Q 008019 285 DMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDAS----FSDDA--PIIPSGFRIIPL 337 (581)
Q Consensus 285 ~~~~~~~~liLQe~s~~De~a~G~~s~vV-yAPVD~~----ds~~v--pLLPSGF~IlPd 337 (581)
..+-+||..+|.-. -.+ ...|. .++| .-.|+-+ -+.+| ..+|+||.|-|+
T Consensus 145 ~~v~~RDFV~lr~~-r~~-~~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 145 GHTKPQDFVILASR-RKP-CDNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp TCSSCEEEEEEEEE-ECC-SSTTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred CCCCCCEEEEEEEE-Eec-cCCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 23445777777663 222 13442 2443 3345432 23333 589999999996
No 55
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=95.33 E-value=0.64 Score=43.02 Aligned_cols=55 Identities=18% Similarity=0.427 Sum_probs=41.5
Q ss_pred CCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 155 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 155 ~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
++|..... .++|+|..++.. + .| +..-++...+ +.||+.+|++|.| .|.+||...
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~----~------~~-------~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~~ 59 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVE----G------SP-------LREFRGEVRL-KAAADDVVKVLRDANAFRQWMPDV 59 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCT----T------CS-------SCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTTE
T ss_pred CCCEEEEc--CCCEEEEEEeCC----C------CC-------eEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHhc
Confidence 68987643 458999998864 1 12 3345677778 6999999999997 999999764
No 56
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=94.96 E-value=0.87 Score=43.47 Aligned_cols=191 Identities=13% Similarity=0.149 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHH
Q 008019 135 RALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL 214 (581)
Q Consensus 135 ~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~l 214 (581)
.++++.-...+..-+. ..++|..... ..++|.|..++.+ + .|.+ -++...+ ++||+.|
T Consensus 13 ~~~~~~~~~~~l~~~~--~~~gW~~~~~-~~~gv~vy~~~~~----~------------~g~~--~k~~~~v-~~~~~~v 70 (221)
T 3p0l_A 13 LQQGEEAMQKALGILS--NQEGWKKESQ-QDNGDKVMSKVVP----D------------VGKV--FRLEVVV-DQPMERL 70 (221)
T ss_dssp HHHHHHHHHHHHHHHH--SCTTCEEEEE-CTTSCEEEEEECS----S------------SCEE--EEEEEEE-SSCHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCCeEeee-cCCCcEEEEEEcC----C------------CceE--EEEEEEE-cCCHHHH
Confidence 3445554444444443 3578997631 2356788888753 1 2333 3666677 8999999
Q ss_pred HHHHh-h--hchhhhhcccchhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCc
Q 008019 215 LRFLR-E--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSD 291 (581)
Q Consensus 215 f~FLR-d--~RseWd~l~~~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 291 (581)
|++|. | .|.+||..... .+.+-.+.. +. .|++.... ..--..+-+||
T Consensus 71 ~~~l~~d~~~r~~Wd~~~~~-----------------------~~vle~~~~----~t--~I~y~~~~-~~~~~~v~~RD 120 (221)
T 3p0l_A 71 YEELVERMEAMGEWNPNVKE-----------------------IKVLQKIGK----DT--FITHELAA-EAAGNLVGPRD 120 (221)
T ss_dssp HHHHTTTGGGTTTSCTTCSE-----------------------EEEEEECSS----SE--EEEEEEEC-C---CCSCCEE
T ss_pred HHHHHhccchhhhcCcchhe-----------------------EEEEEecCC----Ce--EEEEEeec-cccCCccCCce
Confidence 99995 4 99999976321 344444422 22 34443110 10011234578
Q ss_pred eEEEeeccCCCCCCCCceeEEEE-eeccCC----CCCCC--ccccCCcEEecCCCCCCCCCCCcccccccccccCCCCCC
Q 008019 292 IFLLQLCSGVDENAVGNCAELVF-APIDAS----FSDDA--PIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNK 364 (581)
Q Consensus 292 ~liLQe~s~~De~a~G~~s~vVy-APVD~~----ds~~v--pLLPSGF~IlPd~~~~dg~~~~~tldlas~le~gs~~~~ 364 (581)
..++... ..+ .| .+++. -.|+-+ .+..| .++++||.|-|++.
T Consensus 121 fv~~r~~-~~~---~~--~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------------------------- 169 (221)
T 3p0l_A 121 FVSVRCA-KRR---GS--TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAG------------------------- 169 (221)
T ss_dssp EEEEEEE-EEC---SS--CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETT-------------------------
T ss_pred EEEEEEE-EEc---CC--eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCC-------------------------
Confidence 8887763 233 12 34443 445533 12332 47889999988510
Q ss_pred CCCCCCCCCCCCCeeEEEeeeccccccchhhHHHHHhhhhhHHHHHHHHHHHhcC
Q 008019 365 ASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALS 419 (581)
Q Consensus 365 ~~g~~~~~~~~~gSlLTvaFQil~~s~~~~sVa~~a~~~V~~vvstVqrIk~AL~ 419 (581)
+ ..+|.+|.-+|+=........+...+ ....+..+++.++.++.
T Consensus 170 --~-------~~~t~vt~~~~~Dp~G~iP~~lvn~~--~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 170 --S-------PSKTKLTWLLSIDLKGWLPKSIINQV--LSQTQVDFANHLRKRLE 213 (221)
T ss_dssp --E-------EEEEEEEEEECEECCSSCCHHHHHHH--HHHHHHHHHHHHHHHTC
T ss_pred --C-------CCcEEEEEEEEecCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 0 13688888888876665444443322 12456668889988886
No 57
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=94.88 E-value=0.23 Score=41.47 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=63.5
Q ss_pred HHHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhc------------cCHHHhhcCccccccCccchhHHhhhhHHHHH
Q 008019 466 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLE------------TTLVALQDITLEKIFDDSGRKTLCSEFPQIMQ 532 (581)
Q Consensus 466 ~~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e------------~~w~el~~lpsr~sae~~~r~er~~lL~~v~~ 532 (581)
.++.++ +.|++|+..+. +=..+|.|+||.+||+ ++-+++.+.+...-..... ... ++.+
T Consensus 6 rl~~il~~~~~gviv~D~--~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~--~~~----~~~~ 77 (121)
T 4hi4_A 6 RIASALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--HQR----HLLA 77 (121)
T ss_dssp HHHHHHTTSSSEEEEEET--TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHH--HHH----HHHH
T ss_pred HHHHHHhcCCccEEEEcC--CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHH--HHH----HHHh
Confidence 345555 57999999885 5589999999999997 6677788776554432221 111 2222
Q ss_pred hccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 533 QGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 533 qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
..- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 78 ~~~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 78 NLT--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp HCS--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred CcC--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 221 122334444666553 3555677899999998888865
No 58
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=94.72 E-value=0.37 Score=35.83 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=54.8
Q ss_pred CCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEE
Q 008019 474 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 553 (581)
Q Consensus 474 p~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~i 553 (581)
|.+|+..+. +=.++|.|+++.++|+++-+++.+.+...- +.. .+....+.++.+.+... . ++.. .|...++
T Consensus 2 ~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~ 72 (96)
T 3a0s_A 2 ETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFY-KFGERYF 72 (96)
T ss_dssp CCEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEE-EETTEEE
T ss_pred CceEEEEcC--CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEE-cCCcEEE
Confidence 556666654 457899999999999999999999876554 222 22333445555544322 1 2221 2222233
Q ss_pred eeeEEeEeecCCCc-eEEEEEeec
Q 008019 554 ERAVAWKVLNEEEN-AHCICFMFI 576 (581)
Q Consensus 554 e~a~vW~v~D~~g~-~~GqAa~F~ 576 (581)
...+-.+.|++|. ..|...+|.
T Consensus 73 -~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 73 -NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EEEEEEeEcCCCCeeeEEEEEec
Confidence 2344456677654 567766664
No 59
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=94.40 E-value=1.7 Score=41.58 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=73.4
Q ss_pred CCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEEEEEeeecccCCChhHHH-HHHhh--hchhhhhccc
Q 008019 154 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL-RFLRE--HRSEWADSSI 230 (581)
Q Consensus 154 ~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL~A~tS~wL~pvpp~~lf-~FLRd--~RseWd~l~~ 230 (581)
.++|..... ..++++|..+..+ + .|.+. ++..-+ ++||+.|| ++|.| .|.+||....
T Consensus 41 ~~~W~~~~~-~~~g~~vy~~~~~----~------------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~~~ 100 (229)
T 1em2_A 41 EENWKFEKN-NEYGDTVYTIEVP----F------------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKTVT 100 (229)
T ss_dssp GGGCEEEEE-CTTCCEEEEEEET----T------------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTTEE
T ss_pred CCCCEEEEe-cCCCCEEEEEecC----C------------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccccc
Confidence 468987643 2346888777653 1 23333 555566 89999999 78775 9999998742
Q ss_pred chhhHHhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEecccccCcccCCCCCceEEEeeccCCCCCCCCcee
Q 008019 231 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 310 (581)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~~~G~~~~qe~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~a~G~~s 310 (581)
. .+.+-.+.. ... |.+.-. .+.-..-+-+||..++.-. ..+ .+ +-
T Consensus 101 ~-----------------------~~vle~~~~----~t~--I~~~~~-~p~~~~~~~~RDfv~~r~~-~~~---~~-~~ 145 (229)
T 1em2_A 101 A-----------------------CQILQRVED----NTL--ISYDVS-AGAAGGVVSPRDFVNVRRI-ERR---RD-RY 145 (229)
T ss_dssp E-----------------------EEEEEEETT----TEE--EEEEEE-CCBTTTTBCCEEEEEEEEE-EEC---SS-EE
T ss_pred e-----------------------EEEEEecCC----CeE--EEEEEe-cCcCCCCcCCCeeEEEEEE-EEc---CC-EE
Confidence 1 344444421 222 333211 0100112445788887764 333 12 34
Q ss_pred EEEEeeccCCC-C---C--CCccccCCcEEecC
Q 008019 311 ELVFAPIDASF-S---D--DAPIIPSGFRIIPL 337 (581)
Q Consensus 311 ~vVyAPVD~~d-s---~--~vpLLPSGF~IlPd 337 (581)
+++.-.|+-+. | . -+.++++||.|-|.
T Consensus 146 vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 178 (229)
T 1em2_A 146 LSSGIATSHSAKPPTHKYVRGENGPGGMIVLKS 178 (229)
T ss_dssp EEEEEECCCTTSCCCTTSEECEECSEEEEEEEC
T ss_pred EEEEecccCCCCCCCCCCEeeeecccEEEEEec
Confidence 66666776542 1 1 13478899999995
No 60
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=93.69 E-value=0.078 Score=44.12 Aligned_cols=66 Identities=8% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcc
Q 008019 468 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGF 535 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~ 535 (581)
+.++ ..|++|+..+ .+=.++|.|+++.++|+++.+++.+.+..--.++..+......+.++.+.|-
T Consensus 15 ~~il~~~~~~i~~~D--~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 15 ENLYFQGGLGFMALD--EDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CCSSSCTTCEEEEEC--TTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred HHHHhhCCceEEEEC--CCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 3445 4789988876 4668999999999999999999999987666655555566667777777664
No 61
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=93.66 E-value=0.22 Score=40.39 Aligned_cols=89 Identities=8% Similarity=-0.001 Sum_probs=60.7
Q ss_pred CceeEcccHHHHHhhccCHHHhhcCcc--ccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCcEEEeeeEEeEe
Q 008019 485 LPVFTFANQAGLDMLETTLVALQDITL--EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRPISYERAVAWKV 561 (581)
Q Consensus 485 dPvF~YaN~aAL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iSs~Grrf~ie~a~vW~v 561 (581)
+-.|.|.|.+..+||+++-+++.+ +. ..-..|.+|+.-.+.+.++.+.|-.... =.| +.+.|+..+++. ..--+
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~-~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~~w~~~-~~~~~ 89 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKS-VEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHYVWIRD-VVHVV 89 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCB-HHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCEEEEEE-EEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccC-HHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCEEEEEE-EEEEE
Confidence 346899999999999999999988 32 2234566677666777777777642221 233 367888777754 34445
Q ss_pred ecCCCceEEEEEeec
Q 008019 562 LNEEENAHCICFMFI 576 (581)
Q Consensus 562 ~D~~g~~~GqAa~F~ 576 (581)
.|++|+..+...+..
T Consensus 90 ~d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 90 RDDSGEVEALIGFMF 104 (115)
T ss_dssp ECTTSCEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEe
Confidence 799998877655543
No 62
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=92.33 E-value=0.7 Score=44.30 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=64.7
Q ss_pred HHhCCCCCCCCChhHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhh------------ccCHHHhhcCccccccCc
Q 008019 451 CYLGAELLKCEGNESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDML------------ETTLVALQDITLEKIFDD 517 (581)
Q Consensus 451 ~~~G~~L~~~~~~~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~------------e~~w~el~~lpsr~sae~ 517 (581)
++....|+|-......++.+++ .+.+|+.-+. +=..+|+|+++.+|| +++-+++++-+.+.-.+.
T Consensus 8 ~~~~~~~~~~~~e~~~l~~iLd~~~~~vii~D~--~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~ 85 (233)
T 3vol_A 8 HHHSSGLVPRGSHMARIKSALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN 85 (233)
T ss_dssp ----------CTHHHHHHHHHTTSSSEEEEEET--TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS
T ss_pred ccccccCCchHHHHHHHHHHHhcCCCcEEEECC--CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC
Confidence 4445567773333344555665 6999998775 669999999999999 566677777665544332
Q ss_pred cchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 518 SGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 518 ~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+. ....+++. ... .....+...|+.| ...+=-+.|++|.+.|.-..|.+
T Consensus 86 ~~--~~~~~~~~-----~~~-~~~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 86 PA--HQRHLLAN-----LTG-VHKAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp HH--HHHHHHHT-----CCS-CEEEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred HH--HHHHHHHh-----ccc-ceeEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 11 11112221 111 1223344456543 56667788999999998888765
No 63
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=90.52 E-value=0.33 Score=38.46 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=60.0
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhcc---CHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCC
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLET---TLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 540 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~---~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 540 (581)
...+.+++ .|.+|+..+. +=.+.|.|+++.++|++ +-+++.+.+...-.++.. +.++.+.|-...
T Consensus 15 ~~~~~il~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~-- 83 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDD--RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR-- 83 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBT--TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC--
T ss_pred HHHHHHHhhccccEEEECC--CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec--
Confidence 44566664 7888888774 45789999999999997 788888877654443321 445555554221
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 541 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 541 GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
...+...|+.+.+. +-.+.| +|...|...+|.+
T Consensus 84 ~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22233456544332 222335 6777776666644
No 64
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=89.80 E-value=0.71 Score=39.33 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=51.0
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCc
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRP 550 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iSs~Grr 550 (581)
.++++|+.++ .+=.|.|.|.++.++|+|+-+|+.+.+..--..|.+++.-.+.+ .+++-. ...-.| +.+.|+.
T Consensus 7 ~~~d~i~v~d--~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~---~~~~~~-~~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 7 TKTDIHAVLA--SNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF---YNEHHL-MPCTFRFIKKDHTI 80 (111)
T ss_dssp --CCEEEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH---HCSCCS-SCEEEEEECTTSCE
T ss_pred cCCCEEEEEc--CCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHH---hccCCC-ccEEEEEEcCCCCE
Confidence 3677887776 45689999999999999999999998764444566655543333 222211 111234 3688888
Q ss_pred EEEee
Q 008019 551 ISYER 555 (581)
Q Consensus 551 f~ie~ 555 (581)
++++-
T Consensus 81 ~wve~ 85 (111)
T 2vlg_A 81 VWVEA 85 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88864
No 65
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=89.68 E-value=1.1 Score=45.98 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=66.6
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 008019 484 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 563 (581)
Q Consensus 484 ~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D 563 (581)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.+++.-...+.+++++|-.....==.+.+.|.-++++- ..--+.|
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~-~~~~v~~ 337 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT-HYYITYH 337 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE-EEEEEEC
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE-EEEEEEc
Confidence 366899999999999999999999988876667777777777788888888653322224578888888753 3334456
Q ss_pred C-CCceEEEEEee
Q 008019 564 E-EENAHCICFMF 575 (581)
Q Consensus 564 ~-~g~~~GqAa~F 575 (581)
+ +|...+.-.+.
T Consensus 338 ~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 338 QWNSRPEFIVCTH 350 (361)
T ss_dssp TTTCCEEEEEEEE
T ss_pred CCCCCeeEEEEEE
Confidence 5 68776655443
No 66
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=89.43 E-value=0.93 Score=40.65 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=57.4
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
..++.+++ .|.+|+..+. +=.+.|+|++|.++|+++-+++.+.|...-.++.. +.++.+++-. ...+..
T Consensus 80 ~~l~~il~~~~~gvi~~D~--~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~ 149 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDM--KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNEH 149 (190)
T ss_dssp HHHHHHHHHCSSCEEEECT--TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEEE
T ss_pred HHHHHHHHhCCCcEEEEcC--CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcceE
Confidence 44566774 8999998875 56899999999999999999999988765554322 2334444421 122333
Q ss_pred EccCCCcEEEeeeEEeEeecCCCc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEEN 567 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~ 567 (581)
+...|+.|.++ +-.+.+++|.
T Consensus 150 ~~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 150 VVINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EEETTEEEEEE---EEEETTTTEE
T ss_pred EEECCeEEEEE---EEEEEecCCC
Confidence 44467666543 2334454554
No 67
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=87.30 E-value=0.94 Score=50.46 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=73.1
Q ss_pred cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 008019 472 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 551 (581)
Q Consensus 472 ~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf 551 (581)
.++..|+..+. +-.++|.|++..+|++++-+|..+.+...-..+..++....+++.+ .+|-.....=.-..+.|+.+
T Consensus 526 ~a~~~i~~~D~--~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l-~~g~~~~~E~~~~~~dG~~~ 602 (635)
T 4eho_A 526 ASMQPVLITDA--EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELI-DHGRGWRGEVLLRGAGNRPL 602 (635)
T ss_dssp HCSSCCEEEET--TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHH-HHCCCBCCCCEECCSSSSCE
T ss_pred hCCCcEEEECC--CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHH-HcCCcEEEEEEEEccCCcEE
Confidence 58888888765 6789999999999999999999999877666565555444555444 44532222222335778888
Q ss_pred EEeeeEEeEeecCCCceEEEEEeecc
Q 008019 552 SYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 552 ~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+++--. =-+.|++|++.|..++|.|
T Consensus 603 ~~~~~~-~pv~d~~G~v~g~v~i~~D 627 (635)
T 4eho_A 603 PLAVRA-DPVTRTEDQSLGFVLIFSD 627 (635)
T ss_dssp ECCCCE-EEECSTTSSCCEEEECCCC
T ss_pred EEEEEE-EEEECCCCCEEEEEEEEEe
Confidence 775432 2578999999999888865
No 68
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=82.95 E-value=0.96 Score=44.50 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=59.4
Q ss_pred HHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEcc
Q 008019 468 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSS 546 (581)
Q Consensus 468 ~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs 546 (581)
+.++ ..|++|+..+. +=.++|+|+++.++|+++.+++.+.+...-.++ ++....+.++.+.|--. -++.-.
T Consensus 11 ~~i~~~~~~~i~~~d~--~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~ 82 (349)
T 3a0r_A 11 ESILESLETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV---FLNFYK 82 (349)
T ss_dssp CSSGGGSSSEEEEEES--SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC---EEECCC
T ss_pred HHHHhhhcCeEEEECC--CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce---eecccc
Confidence 3455 48999988875 568999999999999999999999877654222 23334455555544210 111111
Q ss_pred -CCCcEEEeeeEEeEeecCCCce-EEEEEeecc
Q 008019 547 -MGRPISYERAVAWKVLNEEENA-HCICFMFIN 577 (581)
Q Consensus 547 -~Grrf~ie~a~vW~v~D~~g~~-~GqAa~F~~ 577 (581)
.++.|.+ .+-.+.|++|.. .|...++.+
T Consensus 83 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 83 FGERYFNI---RFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp BTTBCCEE---EEEEECCTTTTSSCEEEEEEEC
T ss_pred cCceEEEE---EEEEEEcCCCceeeEEEEEEEe
Confidence 2333332 334455666654 466666644
No 69
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=81.39 E-value=7.2 Score=32.89 Aligned_cols=106 Identities=7% Similarity=-0.076 Sum_probs=66.0
Q ss_pred HHHHh-cCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 467 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 467 ~~~L~-~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
++.+. .++..|.-.+.+ -..+|.|.+..++|+++-+++.+.. +.....|.+|+.-.+.+.++.+.|-.... =.|
T Consensus 11 l~~~~~~~~~g~w~~d~~--~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~-e~r 87 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNPK--TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV-EYR 87 (142)
T ss_dssp HHHHHHHTTCEEEEECTT--TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEE-EEE
T ss_pred HHHHHHhCCcEEEEEEcC--CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEE-EEE
Confidence 34444 367766655543 3457899999999999998876532 23334577777767777777776533221 123
Q ss_pred -EccCCCcEEEeeeEEeEeecCCCceEEEEEeec
Q 008019 544 -LSSMGRPISYERAVAWKVLNEEENAHCICFMFI 576 (581)
Q Consensus 544 -iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~ 576 (581)
+.+.|...+++. ..--+.|++|...+...++.
T Consensus 88 ~~~~~G~~~w~~~-~~~~~~d~~g~~~~~~G~~~ 120 (142)
T 3mr0_A 88 VRTRSGDFRWIQS-RGQALWNSAGEPYRMVGWIM 120 (142)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 356787766643 33346789998877655543
No 70
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=78.74 E-value=4.2 Score=34.13 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=37.1
Q ss_pred eeEeecCCCceEEEEEEeeeccCCCcccccccccchhHHHHHHHHHHHH-Hhhhccc
Q 008019 61 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLRQIS 116 (581)
Q Consensus 61 cLIq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~afga~rw~aaL-R~~erla 116 (581)
+-++|.++| |+|+|..+.+....-+..++.+++..-+-=+.++.+.+| +.+|+.+
T Consensus 91 ~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~~ 146 (147)
T 2d4r_A 91 WVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAAS 146 (147)
T ss_dssp EEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346788887 999999888876433445556665444444677888888 4777643
No 71
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=76.37 E-value=2.8 Score=40.79 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=40.6
Q ss_pred CCCCccccccCCCcceEEEEccCCCccccccccccCCCCCCCceEE-EEEeeecccCCChhHHHHHHhh--hchhhhhcc
Q 008019 153 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HRSEWADSS 229 (581)
Q Consensus 153 ~~~~W~~l~~~g~~dVrv~~r~s~~~~~~~~~~~~~g~p~~~G~VL-~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~ 229 (581)
.+++|..... .++|+|..++.+ + .|.++ .-++..-+++++|+.||++|.| .|.+||...
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~----~------------~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~~ 106 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVE----E------------NGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTI 106 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCE----E------------TTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCSE
T ss_pred CCCCcEEEEe--CCCEEEEEEEcC----C------------CCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhhc
Confidence 3568987653 357999998864 1 12221 1244444546999999999997 999999763
No 72
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=75.63 E-value=11 Score=38.94 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC----CeeE-EccCC
Q 008019 474 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ----SGIC-LSSMG 548 (581)
Q Consensus 474 p~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y----~GvR-iSs~G 548 (581)
...|.-|+ .|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.+++++|-..+. .=.| +.+.|
T Consensus 154 ~~fi~r~~--~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 154 PKFAIRHT--ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp CEEEEEEE--TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred ceEEEEEC--CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 34455554 36789999999999999999999999877767788888777888888887764320 1133 47888
Q ss_pred CcEEEeeeEEeEe-ecCCC
Q 008019 549 RPISYERAVAWKV-LNEEE 566 (581)
Q Consensus 549 rrf~ie~a~vW~v-~D~~g 566 (581)
.-.+++ +-|++ .|..+
T Consensus 232 ~~vWle--t~~~~~~np~s 248 (339)
T 3rty_A 232 CYVLLE--TEWTSFVNPWS 248 (339)
T ss_dssp CEEEEE--EEEEEEECTTT
T ss_pred CEEEEE--EEEEEEECCCC
Confidence 888885 34554 56553
No 73
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=73.41 E-value=9.4 Score=34.20 Aligned_cols=105 Identities=7% Similarity=0.013 Sum_probs=65.6
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHH---HHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCC
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQA---GLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 540 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~a---AL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 540 (581)
+.++++++ .|+.|+.-+. +=.+.|.|++ |-++|+. -++.++-+-.--.+ ....+....+-++.+.|-... .
T Consensus 19 ~~l~~IL~~~~~gI~~vD~--~g~I~~~N~a~~~~~~i~g~-~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~-~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK--DDIFQYYNDSVPAAEMVFKR-TPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK-V 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET--TSBEEEECCCSCGGGCSSCC-CGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE-E
T ss_pred HHHHHHHHhCCCceEEEcC--CCeEEEEeCCCchhhhhcCC-CHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE-E
Confidence 45667774 8999888765 6789999999 9999994 47888876543333 323222233344555564332 2
Q ss_pred eeEEccC--CCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 541 GICLSSM--GRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 541 GvRiSs~--Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
=+.+... |+.+.+ ...-|.|++|.+.|.-.+|.+
T Consensus 94 ~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 94 NMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp EEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEE
Confidence 2333323 554443 334556999999998888754
No 74
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=68.73 E-value=15 Score=37.72 Aligned_cols=104 Identities=10% Similarity=0.039 Sum_probs=70.5
Q ss_pred HHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 008019 465 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 543 (581)
Q Consensus 465 ~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 543 (581)
..++.+++ .|+.|+.-+. +=+++|.|++ .++| ++-+++++-+...-.++.. ......+.++.+.|-.. ..-+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~--~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~-~~~~~~l~~~l~~g~~~-~~~~~ 312 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDK--DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS-VYVVNKILKAFKEGRKK-EATFW 312 (369)
T ss_dssp HHHHHHHHHSSSEEEEECT--TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG-HHHHHHHHHHHHHTSCS-CEEEE
T ss_pred HHHHHHHHhCCCcEEEECC--CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh-HHHHHHHHHHHHcCCce-EEEEE
Confidence 45566774 8999998876 5689999999 9999 9999999987765544332 22223344455666432 22344
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeecc
Q 008019 544 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 577 (581)
Q Consensus 544 iSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~ 577 (581)
+...|+.+.+. +--|.|++|.+.|...+|.+
T Consensus 313 ~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~D 343 (369)
T 3cax_A 313 LRLREKYVYIK---YVPLFNEKGEYIGTLEMTMD 343 (369)
T ss_dssp EEETTEEEEEE---EEEEECTTSCEEEEEEEEEE
T ss_pred EeeCCEEEEEE---EEEEECCCCCEEEEEEEEEc
Confidence 55567655543 33567999999998888865
No 75
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=64.66 E-value=23 Score=36.70 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=62.8
Q ss_pred eeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCcEEEee
Q 008019 477 VLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRPISYER 555 (581)
Q Consensus 477 vl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iSs~Grrf~ie~ 555 (581)
+.-|+ .|=.|+|.|.++.++++|+-+||++.++---.-|.+++.-.+.+.++++.|--....=.| ..+.|.-.+++-
T Consensus 281 i~~~~--~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~ 358 (387)
T 4f3l_B 281 VSRHA--IDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRS 358 (387)
T ss_dssp EEEEC--TTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEE
T ss_pred EEEEC--CCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEE
Confidence 44444 367899999999999999999999987765556777766666667776543211111133 378898888863
Q ss_pred eEEeEe-ecC-CCceEEEEEe
Q 008019 556 AVAWKV-LNE-EENAHCICFM 574 (581)
Q Consensus 556 a~vW~v-~D~-~g~~~GqAa~ 574 (581)
-|++ .|+ +|...+.-.+
T Consensus 359 --~~~~~~~~~~g~~~~ivg~ 377 (387)
T 4f3l_B 359 --RWFSFMNPWTKEVEYIVST 377 (387)
T ss_dssp --EEEEEEETTTTEEEEEEEE
T ss_pred --EEEEEECCCCCCEEEEEEE
Confidence 3444 455 5777665544
No 76
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=63.38 E-value=27 Score=31.17 Aligned_cols=97 Identities=6% Similarity=-0.049 Sum_probs=71.8
Q ss_pred Hhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 008019 470 LWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 547 (581)
Q Consensus 470 L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~ 547 (581)
+++ .|+.|+-=+ .|=...|-|+++.++.+++-++..+-+. +..++-....+=+..+.+..++|-...-.+-.++..
T Consensus 22 ~ld~l~~Gii~lD--~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~ 99 (125)
T 1nwz_A 22 QLDGLAFGAIQLD--GDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQ 99 (125)
T ss_dssp HHTTCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTT
T ss_pred HHhccCceEEEEC--CCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 454 788877654 4678999999999999999999999887 445555555554555666666999887778888999
Q ss_pred CCcEEEeeeEEeEeecCCCceEEE
Q 008019 548 GRPISYERAVAWKVLNEEENAHCI 571 (581)
Q Consensus 548 Grrf~ie~a~vW~v~D~~g~~~Gq 571 (581)
|+++.++=.. +.+++|...+.
T Consensus 100 ~~p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 100 MTPTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp SCCEEEEEEE---EECSSSSEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988875433 34666665553
No 77
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=61.08 E-value=31 Score=31.09 Aligned_cols=97 Identities=6% Similarity=-0.013 Sum_probs=71.3
Q ss_pred Hhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 008019 470 LWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 547 (581)
Q Consensus 470 L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~ 547 (581)
+++ .|+.|+-=+ .+=...|-|+++.++.+++-+++.+-+. +..++-....+=+..+.+..++|-...-.+-.++..
T Consensus 27 ~ld~l~~GiivlD--~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~ 104 (129)
T 1mzu_A 27 EFDALPVGAIQVD--GSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQ 104 (129)
T ss_dssp TGGGCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECS
T ss_pred HHhccCceEEEEC--CCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 353 788877654 4678999999999999999999999887 445555555555555666666999887778888999
Q ss_pred CCcEEEeeeEEeEeecCCCceEEE
Q 008019 548 GRPISYERAVAWKVLNEEENAHCI 571 (581)
Q Consensus 548 Grrf~ie~a~vW~v~D~~g~~~Gq 571 (581)
|+++.++=.. +.+++|...+.
T Consensus 105 ~~p~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 105 MAPVRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp SCEEEEEEEE---EECSSTTEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988775433 34666665553
No 78
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=45.14 E-value=72 Score=32.41 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=58.5
Q ss_pred eeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc--CCCeeEE-ccCCCcEEE
Q 008019 477 VLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC--LQSGICL-SSMGRPISY 553 (581)
Q Consensus 477 vl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~--~y~GvRi-Ss~Grrf~i 553 (581)
+.-|+ .|=.|+|.|.++.++++|+-+||++.+..--.-|.+++.-.+.+.++++.|-.. ...=.|+ .+.|.-.++
T Consensus 177 itrh~--~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwv 254 (317)
T 4dj3_A 177 TTTHT--PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVIL 254 (317)
T ss_dssp EEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEE
T ss_pred EEEec--CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEE
Confidence 34443 477899999999999999999999988765556777777777788888764331 1112343 677887777
Q ss_pred eeeEEeEe-ecC
Q 008019 554 ERAVAWKV-LNE 564 (581)
Q Consensus 554 e~a~vW~v-~D~ 564 (581)
+ +-|++ +|.
T Consensus 255 e--t~~~~~~np 264 (317)
T 4dj3_A 255 D--SSWSSFVNP 264 (317)
T ss_dssp E--EEEEEEECS
T ss_pred E--EEEEEEECC
Confidence 6 34554 444
No 79
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=42.37 E-value=32 Score=35.04 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=46.9
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHH
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQ 529 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~ 529 (581)
++..+.+.+ .+..|+.-+ +|-.+.|.|.+..++++|+-+||++.+..--..|.++++-...|..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~--~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIM--TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEE--TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEc--CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 444445554 455544444 4679999999999999999999999987766677777766665554
No 80
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=41.76 E-value=1.1e+02 Score=31.04 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=57.4
Q ss_pred eeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHh-ccccCCCeeEE-ccCCCcEEE
Q 008019 476 AVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQ-GFMCLQSGICL-SSMGRPISY 553 (581)
Q Consensus 476 avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~q-G~~~~y~GvRi-Ss~Grrf~i 553 (581)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++. |-.....=.|+ .+.|.-.++
T Consensus 178 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 255 (320)
T 4dj2_A 178 FTTRHT--PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTM 255 (320)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEE
T ss_pred EEEEec--CCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEE
Confidence 344454 46789999999999999999999998765555677777777777777763 43221112343 677777777
Q ss_pred eeeEEeEe-ecC
Q 008019 554 ERAVAWKV-LNE 564 (581)
Q Consensus 554 e~a~vW~v-~D~ 564 (581)
+- -|++ +|.
T Consensus 256 et--~~~~~~np 265 (320)
T 4dj2_A 256 DT--SWAGFVHP 265 (320)
T ss_dssp EC--EEEEEECT
T ss_pred EE--EEEEEECC
Confidence 53 4444 443
No 81
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=41.66 E-value=30 Score=35.06 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=58.4
Q ss_pred eeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccc-cCCCeeEE-ccCCCcEEE
Q 008019 476 AVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFM-CLQSGICL-SSMGRPISY 553 (581)
Q Consensus 476 avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~-~~y~GvRi-Ss~Grrf~i 553 (581)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++.|-. ....=.|+ .+.|.-.++
T Consensus 167 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 244 (309)
T 3gdi_A 167 FTTTHT--PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITL 244 (309)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEE
T ss_pred EEEEec--CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEE
Confidence 445555 47789999999999999999999998765555677777777778888875432 11012454 777887777
Q ss_pred eeeEEeEee
Q 008019 554 ERAVAWKVL 562 (581)
Q Consensus 554 e~a~vW~v~ 562 (581)
+ +-|+++
T Consensus 245 e--t~~~~~ 251 (309)
T 3gdi_A 245 D--TSWSSF 251 (309)
T ss_dssp E--EEEEEE
T ss_pred E--EEEEEE
Confidence 5 356553
No 82
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=31.54 E-value=61 Score=29.20 Aligned_cols=56 Identities=2% Similarity=-0.021 Sum_probs=38.3
Q ss_pred EeecCCCceEEEEEEeeeccCCCcccccccccchhHH-------H--HHHHHHHHH-Hhhhccccc
Q 008019 63 IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTL-------I--AQKTTMAAL-RHLRQISQE 118 (581)
Q Consensus 63 Iq~~~nG~SkVtwVeH~e~d~~~v~~l~RpL~~Sg~a-------f--ga~rw~aaL-R~~erla~~ 118 (581)
+++.++|+|+|+|.-+.++....+..++.++..-..+ + ..+..++.| +++|+.+.+
T Consensus 98 f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~~~~ 163 (172)
T 3tfz_A 98 AFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVRA 163 (172)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 6777778999999999999888888888877643211 1 233456666 366665443
No 83
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=22.02 E-value=98 Score=31.87 Aligned_cols=64 Identities=6% Similarity=0.090 Sum_probs=44.1
Q ss_pred hHHHHHHhc-CCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhH
Q 008019 464 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFP 528 (581)
Q Consensus 464 ~~~~~~L~~-ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~ 528 (581)
+++.+.+.+ .+.+|+.-+. .+=.+.|.|.++.++++++-+||++.+.---.-|.++++-.+.|.
T Consensus 85 ~~~~~~ll~~~~gfi~v~~~-~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~ 149 (387)
T 4f3l_B 85 DELKHLILRAADGFLFVVGC-DRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLS 149 (387)
T ss_dssp HHHHHHHHHTCCSEEEEEET-TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHS
T ss_pred HHHHHHHHhcCCCEEEEEec-CCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhc
Confidence 444455555 3444444332 225889999999999999999999998766666777766655553
No 84
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=22.00 E-value=48 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=21.4
Q ss_pred EeeecccCCChhHHHHHHhh--hchhhhh
Q 008019 201 KASMLLQDVPPAILLRFLRE--HRSEWAD 227 (581)
Q Consensus 201 ~tS~wL~pvpp~~lf~FLRd--~RseWd~ 227 (581)
..+..+ +.||+.||++|.| +..+|.-
T Consensus 5 ~~~~~i-~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 5 RAERYI-PAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEE-SSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEe-CCCHHHHHHHHhChhhhhhhcc
Confidence 467778 8999999999998 6678853
Done!